BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>032973
MATIAGVNLSTPSVFAKITDPKSKVQPSRSLWLNNPSRKRPAQFRTGRMHMQPLRAAPDR
ISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKKDSDPLEAYCKDNP
ETDECRTYED

High Scoring Gene Products

Symbol, full name Information P value
CP12-2
CP12 domain-containing protein 2
protein from Arabidopsis thaliana 7.7e-32
CP12-1
AT2G47400
protein from Arabidopsis thaliana 2.2e-27
CP12-3
AT1G76560
protein from Arabidopsis thaliana 1.2e-17
CP12
Calvin cycle protein CP12, chloroplastic
protein from Chlamydomonas reinhardtii 2.0e-17

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  032973
        (130 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2096009 - symbol:CP12-2 "CP12 domain-containin...   349  7.7e-32   1
TAIR|locus:2065220 - symbol:CP12-1 "AT2G47400" species:37...   307  2.2e-27   1
TAIR|locus:2011676 - symbol:CP12-3 "AT1G76560" species:37...   215  1.2e-17   1
UNIPROTKB|A6Q0K5 - symbol:CP12 "Calvin cycle protein CP12...   213  2.0e-17   1


>TAIR|locus:2096009 [details] [associations]
            symbol:CP12-2 "CP12 domain-containing protein 2"
            species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009416 "response to light stimulus"
            evidence=IEP] [GO:0009570 "chloroplast stroma" evidence=ISS;IDA]
            [GO:0009744 "response to sucrose stimulus" evidence=IEP;RCA]
            [GO:0018316 "peptide cross-linking via L-cystine" evidence=TAS]
            [GO:0019253 "reductive pentose-phosphate cycle" evidence=TAS]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0034605 "cellular
            response to heat" evidence=IEP] [GO:0070417 "cellular response to
            cold" evidence=IEP] [GO:0071454 "cellular response to anoxia"
            evidence=IEP] [GO:0043234 "protein complex" evidence=IDA]
            [GO:0080153 "negative regulation of reductive pentose-phosphate
            cycle" evidence=IDA] [GO:0009637 "response to blue light"
            evidence=RCA] [GO:0009644 "response to high light intensity"
            evidence=RCA] [GO:0010114 "response to red light" evidence=RCA]
            [GO:0010155 "regulation of proton transport" evidence=RCA]
            [GO:0010218 "response to far red light" evidence=RCA] GO:GO:0009570
            EMBL:CP002686 GO:GO:0043234 GO:GO:0034605 GO:GO:0009744
            GO:GO:0005507 GO:GO:0009416 GO:GO:0070417 GO:GO:0016151
            eggNOG:NOG08802 HOGENOM:HOG000237802 ProtClustDB:PLN00204
            GO:GO:0080153 GO:GO:0019253 InterPro:IPR003823 Pfam:PF02672
            SMART:SM01093 EMBL:AL162507 EMBL:AY096645 EMBL:AY114023
            EMBL:AY086744 IPI:IPI00535044 PIR:T48033 RefSeq:NP_191800.1
            UniGene:At.23855 UniGene:At.48798 PDB:2LJ9 PDB:3QV1 PDB:3RVD
            PDBsum:2LJ9 PDBsum:3QV1 PDBsum:3RVD IntAct:Q9LZP9 STRING:Q9LZP9
            PRIDE:Q9LZP9 EnsemblPlants:AT3G62410.1 GeneID:825414
            KEGG:ath:AT3G62410 TAIR:At3g62410 InParanoid:Q9LZP9 OMA:NIATQRV
            PhylomeDB:Q9LZP9 BioCyc:ARA:AT3G62410-MONOMER
            BioCyc:MetaCyc:AT3G62410-MONOMER Genevestigator:Q9LZP9
            GO:GO:0071454 GO:GO:0018316 Uniprot:Q9LZP9
        Length = 131

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 77/134 (57%), Positives = 97/134 (72%)

Query:     1 MATIA-GVNLSTPSVFAKITDPKSKVQPSRSLWLNNPSRKRPAQFRTGRMHMQPLRAAPD 59
             MATIA G+N++T  VF  +T     V  +  + LNN S    ++     M +QP++AAP+
Sbjct:     1 MATIATGLNIATQRVF--VTSENRPVCLAGPVHLNN-SWNLGSRTTNRMMKLQPIKAAPE 57

Query:    60 R-ISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKK-D-SDPLEAYC 116
               IS+ VE+SIK A+E C GDP SGEC AAWDEVEELSAAASHAR++KK D SDPLE YC
Sbjct:    58 GGISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDKKKADGSDPLEEYC 117

Query:   117 KDNPETDECRTYED 130
             KDNPET+ECRTY++
Sbjct:   118 KDNPETNECRTYDN 131


>TAIR|locus:2065220 [details] [associations]
            symbol:CP12-1 "AT2G47400" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009416 "response to light
            stimulus" evidence=IEP] [GO:0009570 "chloroplast stroma"
            evidence=ISS;IDA] [GO:0009744 "response to sucrose stimulus"
            evidence=IEP] [GO:0034605 "cellular response to heat" evidence=IEP]
            [GO:0070417 "cellular response to cold" evidence=IEP] [GO:0071454
            "cellular response to anoxia" evidence=IEP] [GO:0009941
            "chloroplast envelope" evidence=IDA] [GO:0043234 "protein complex"
            evidence=IDA] [GO:0080153 "negative regulation of reductive
            pentose-phosphate cycle" evidence=IDA] [GO:0006007 "glucose
            catabolic process" evidence=RCA] GO:GO:0009570 GO:GO:0043234
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009744 GO:GO:0009941
            GO:GO:0005507 GO:GO:0016151 EMBL:AC002337 EMBL:AY052217
            EMBL:AY062839 EMBL:AY114595 EMBL:AY143796 IPI:IPI00519070
            IPI:IPI00546171 PIR:G84914 RefSeq:NP_566100.2 UniGene:At.20118
            UniGene:At.71629 IntAct:O22914 STRING:O22914 PaxDb:O22914
            PRIDE:O22914 ProMEX:O22914 EnsemblPlants:AT2G47400.1 GeneID:819353
            KEGG:ath:AT2G47400 TAIR:At2g47400 eggNOG:NOG08802
            HOGENOM:HOG000237802 InParanoid:O22914 OMA:EAKETCA PhylomeDB:O22914
            ProtClustDB:PLN00204 Genevestigator:O22914 GO:GO:0080153
            GO:GO:0019253 InterPro:IPR003823 Pfam:PF02672 SMART:SM01093
            Uniprot:O22914
        Length = 124

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 74/137 (54%), Positives = 92/137 (67%)

Query:     1 MATIA--GVNLSTPSVFAKITDPKSKVQ-PSRSLWLNNPSRKRPAQFRTGRM-HMQPLRA 56
             M TIA  G+N++TP V  +   P ++V  P R   LN P       ++ G M  M  ++A
Sbjct:     1 MTTIAAAGLNVATPRVVVR---PVARVLGPVR---LNYP-------WKFGSMKRMVVVKA 47

Query:    57 APD-RISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKK--DSDPLE 113
               +  ISEKVE+SI+ A+E C  DP SGEC AAWDEVEELSAAASHAR++KK   SDPLE
Sbjct:    48 TSEGEISEKVEKSIQEAKETCADDPVSGECVAAWDEVEELSAAASHARDKKKAGGSDPLE 107

Query:   114 AYCKDNPETDECRTYED 130
              YC DNPETDECRTY++
Sbjct:   108 EYCNDNPETDECRTYDN 124


>TAIR|locus:2011676 [details] [associations]
            symbol:CP12-3 "AT1G76560" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009416 "response to light
            stimulus" evidence=IEP] [GO:0034605 "cellular response to heat"
            evidence=IEP] [GO:0070417 "cellular response to cold" evidence=IEP]
            [GO:0071454 "cellular response to anoxia" evidence=IEP] [GO:0043234
            "protein complex" evidence=IDA] [GO:0080153 "negative regulation of
            reductive pentose-phosphate cycle" evidence=IDA] EMBL:CP002684
            GO:GO:0009507 GO:GO:0043234 GO:GO:0034605 GO:GO:0005507
            GO:GO:0016151 EMBL:AC015450 HOGENOM:HOG000237802 GO:GO:0080153
            GO:GO:0019253 InterPro:IPR003823 Pfam:PF02672 SMART:SM01093
            GO:GO:0071454 EMBL:BT004753 EMBL:AK227842 EMBL:AY085359
            IPI:IPI00532105 PIR:F96793 RefSeq:NP_565134.1 UniGene:At.34641
            UniGene:At.67210 STRING:Q9C9K2 PRIDE:Q9C9K2
            EnsemblPlants:AT1G76560.1 GeneID:843989 KEGG:ath:AT1G76560
            TAIR:At1g76560 eggNOG:NOG305841 InParanoid:Q9C9K2 OMA:KEATEVC
            PhylomeDB:Q9C9K2 ProtClustDB:CLSN2689235 Genevestigator:Q9C9K2
            Uniprot:Q9C9K2
        Length = 134

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 38/74 (51%), Positives = 53/74 (71%)

Query:    59 DRISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKK--DSDPLEAYC 116
             +++SE +E+ +K A E CE +  S EC  AWDEVEE+S A +  R + K  + DPLE++C
Sbjct:    61 EKLSEMIEEKVKEATEVCEAEEMSEECRVAWDEVEEVSQARADLRIKLKLLNQDPLESFC 120

Query:   117 KDNPETDECRTYED 130
             ++NPETDECR YED
Sbjct:   121 QENPETDECRIYED 134


>UNIPROTKB|A6Q0K5 [details] [associations]
            symbol:CP12 "Calvin cycle protein CP12, chloroplastic"
            species:3055 "Chlamydomonas reinhardtii" [GO:0005507 "copper ion
            binding" evidence=IDA] [GO:0009507 "chloroplast" evidence=ISS]
            [GO:0016151 "nickel cation binding" evidence=IDA] [GO:0043234
            "protein complex" evidence=ISS] [GO:0080153 "negative regulation of
            reductive pentose-phosphate cycle" evidence=ISS] GO:GO:0009507
            GO:GO:0043234 GO:GO:0005507 GO:GO:0016151 eggNOG:NOG08802
            OMA:EAKETCA GO:GO:0080153 GO:GO:0019253 InterPro:IPR003823
            Pfam:PF02672 SMART:SM01093 EMBL:DS496128 EMBL:AM748786
            RefSeq:XP_001694345.1 UniGene:Cre.2336 PDB:2DDN PDBsum:2DDN
            DisProt:DP00359 STRING:A6Q0K5 GeneID:5719874
            KEGG:cre:CHLREDRAFT_148487 ProtClustDB:CLSN2921937 Uniprot:A6Q0K5
        Length = 107

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 47/107 (43%), Positives = 68/107 (63%)

Query:    28 SRSLWLNNPSRKRPAQFRTGRMHMQPLRAAPDRISEKVEQSIKSAEEACEGDPASGECAA 87
             ++S+ ++ P+  RP   R   +     + A D +++KV+ ++K AE+AC     S +CA 
Sbjct:     4 TKSVVISRPA-VRPVSTRRAVVVRASGQPAVD-LNKKVQDAVKEAEDAC-AKGTSADCAV 60

Query:    88 AWDEVEELSAAASHARER-KKD---SDPLEAYCKDNPETDECRTYED 130
             AWD VEELSAA SH ++  K D   +DPLEA+CKD P+ DECR YED
Sbjct:    61 AWDTVEELSAAVSHKKDAVKADVTLTDPLEAFCKDAPDADECRVYED 107


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.309   0.124   0.363    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      130       130   0.00091  102 3  11 23  0.48    31
                                                     29  0.42    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  598 (64 KB)
  Total size of DFA:  145 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.39u 0.12s 17.51t   Elapsed:  00:00:00
  Total cpu time:  17.39u 0.12s 17.51t   Elapsed:  00:00:00
  Start:  Fri May 10 09:02:37 2013   End:  Fri May 10 09:02:37 2013

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