BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032973
(130 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LZP9|CP122_ARATH Calvin cycle protein CP12-2, chloroplastic OS=Arabidopsis thaliana
GN=CP12-2 PE=1 SV=1
Length = 131
Score = 132 bits (333), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 76/134 (56%), Positives = 96/134 (71%), Gaps = 7/134 (5%)
Query: 1 MATIA-GVNLSTPSVFAKITDPKSKVQPSRSLWLNNPSRKRPAQFRTGRMHMQPLRAAPD 59
MATIA G+N++T VF +T V + + LNN S ++ M +QP++AAP+
Sbjct: 1 MATIATGLNIATQRVF--VTSENRPVCLAGPVHLNN-SWNLGSRTTNRMMKLQPIKAAPE 57
Query: 60 R-ISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKK--DSDPLEAYC 116
IS+ VE+SIK A+E C GDP SGEC AAWDEVEELSAAASHAR++KK SDPLE YC
Sbjct: 58 GGISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDKKKADGSDPLEEYC 117
Query: 117 KDNPETDECRTYED 130
KDNPET+ECRTY++
Sbjct: 118 KDNPETNECRTYDN 131
>sp|O22914|CP121_ARATH Calvin cycle protein CP12-1, chloroplastic OS=Arabidopsis thaliana
GN=CP12-1 PE=1 SV=1
Length = 124
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/134 (50%), Positives = 84/134 (62%), Gaps = 14/134 (10%)
Query: 1 MATIAGVNLSTPSVFAKITDPKSKVQPSRSLWLNNPSRKRPAQFRTGRM-HMQPLRAAPD 59
M TIA L+ + + + P R LN P ++ G M M ++A +
Sbjct: 1 MTTIAAAGLNVATPRVVVRPVARVLGPVR---LNYP-------WKFGSMKRMVVVKATSE 50
Query: 60 -RISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKK--DSDPLEAYC 116
ISEKVE+SI+ A+E C DP SGEC AAWDEVEELSAAASHAR++KK SDPLE YC
Sbjct: 51 GEISEKVEKSIQEAKETCADDPVSGECVAAWDEVEELSAAASHARDKKKAGGSDPLEEYC 110
Query: 117 KDNPETDECRTYED 130
DNPETDECRTY++
Sbjct: 111 NDNPETDECRTYDN 124
>sp|Q9C9K2|CP123_ARATH Calvin cycle protein CP12-3, chloroplastic OS=Arabidopsis thaliana
GN=CP12-3 PE=1 SV=1
Length = 134
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 53/74 (71%), Gaps = 2/74 (2%)
Query: 59 DRISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKK--DSDPLEAYC 116
+++SE +E+ +K A E CE + S EC AWDEVEE+S A + R + K + DPLE++C
Sbjct: 61 EKLSEMIEEKVKEATEVCEAEEMSEECRVAWDEVEEVSQARADLRIKLKLLNQDPLESFC 120
Query: 117 KDNPETDECRTYED 130
++NPETDECR YED
Sbjct: 121 QENPETDECRIYED 134
>sp|A6Q0K5|CP12_CHLRE Calvin cycle protein CP12, chloroplastic OS=Chlamydomonas
reinhardtii GN=CP12 PE=1 SV=2
Length = 107
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 67/107 (62%), Gaps = 7/107 (6%)
Query: 28 SRSLWLNNPSRKRPAQFRTGRMHMQPLRAAPDRISEKVEQSIKSAEEACEGDPASGECAA 87
++S+ ++ P+ RP R + + A D +++KV+ ++K AE+AC S +CA
Sbjct: 4 TKSVVISRPA-VRPVSTRRAVVVRASGQPAVD-LNKKVQDAVKEAEDAC-AKGTSADCAV 60
Query: 88 AWDEVEELSAAASHARERKKD----SDPLEAYCKDNPETDECRTYED 130
AWD VEELSAA SH ++ K +DPLEA+CKD P+ DECR YED
Sbjct: 61 AWDTVEELSAAVSHKKDAVKADVTLTDPLEAFCKDAPDADECRVYED 107
>sp|P12860|G3PB_SPIOL Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic
OS=Spinacia oleracea GN=GAPB PE=1 SV=1
Length = 451
Score = 37.0 bits (84), Expect = 0.035, Method: Composition-based stats.
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 110 DPLEAYCKDNPETDECRTYE 129
DPLE +CKDNP +EC+ YE
Sbjct: 432 DPLEDFCKDNPADEECKLYE 451
>sp|P25857|G3PB_ARATH Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic
OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2
Length = 447
Score = 33.5 bits (75), Expect = 0.39, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 91 EVEELSAAASHARERKKDSDPLEAYCKDNPETDECRTYE 129
++ L A+ E DPLE +CK NP +EC+ Y+
Sbjct: 409 DLAHLVASKWPGAEAVGSGDPLEDFCKTNPADEECKVYD 447
>sp|P12859|G3PB_PEA Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum
sativum GN=GAPB PE=2 SV=2
Length = 451
Score = 32.7 bits (73), Expect = 0.61, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 110 DPLEAYCKDNPETDECRTYE 129
DPLE +C+ NP +EC+ YE
Sbjct: 432 DPLEDFCETNPADEECKVYE 451
>sp|Q5LWJ6|DNAK_RUEPO Chaperone protein DnaK OS=Ruegeria pomeroyi (strain ATCC 700808 /
DSM 15171 / DSS-3) GN=dnaK PE=3 SV=1
Length = 637
Score = 32.3 bits (72), Expect = 0.84, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 46 TGRMHMQPLRAAPDRISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARER 105
TG+ H ++A+ E +E+ +K AEE E D A E A ++ E L + + E
Sbjct: 488 TGKEHKITIQASGGLSDEDIEKMVKDAEENAEADKARKELVEARNQAESLIHSTEKSVEE 547
Query: 106 KKDS-DP 111
D DP
Sbjct: 548 HGDKVDP 554
>sp|P14180|CHS2_YEAST Chitin synthase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=CHS2 PE=1 SV=1
Length = 963
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 27 PSRSLWLNNPSRKRPAQFRTGRMHMQPLRAAPDRISEKVEQSIKSAEEA 75
PSR+ +P R+ QF H P+ AP+R + +++S K A EA
Sbjct: 61 PSRAALRYSPDRRHRTQFYRDSAHNSPV--APNRYAANLQESPKRAGEA 107
>sp|P56699|CAC1E_DIPOM Probable voltage-dependent R-type calcium channel subunit alpha-1E
OS=Diplobatis ommata PE=2 SV=1
Length = 2223
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 24 KVQPSRSLWLNNPSRKRPAQFRTGRMHMQPLR 55
+VQPS++LW +P R R ++ H PLR
Sbjct: 2113 RVQPSKALWSESPGRSRESE----SQHSTPLR 2140
>sp|Q498D1|FOXP1_RAT Forkhead box protein P1 OS=Rattus norvegicus GN=Foxp1 PE=2 SV=1
Length = 711
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 35 NPSRKRPAQFRTGRMHMQPLRAAPDRISEKVEQSIKSAEEACEGDPASGECAAAWDEVEE 94
NPS + ++G + PL AA + E SI A G+P G A+A E E
Sbjct: 586 NPSLIK--NMQSGHAYCTPLNAALQ--ASMAENSIPLYTTASMGNPTLGSLASAIRE--E 639
Query: 95 LSAAASHARERKKDSDP 111
L+ A H + DS P
Sbjct: 640 LNGAMEHTNSNESDSSP 656
>sp|Q7X2S8|CLPB_MEIRU Chaperone protein ClpB OS=Meiothermus ruber GN=clpB PE=3 SV=1
Length = 854
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 38 RKRPAQFRTGRMHMQPLRAAPDRISEKVEQSIKSAEEACEGDPAS----GECAAAWDEVE 93
RK+ A++ R MQ LRAA R+ E V I+ AE A + + A+ GE EV
Sbjct: 447 RKQQAEWEAEREIMQKLRAAQQRLDE-VRTQIEQAERAYDLNKAAPLRYGELPKLEQEVN 505
Query: 94 ELS 96
EL+
Sbjct: 506 ELA 508
>sp|A4IFD2|FOXP1_BOVIN Forkhead box protein P1 OS=Bos taurus GN=FOXP1 PE=2 SV=1
Length = 674
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 35 NPSRKRPAQFRTGRMHMQPLRAAPDRISEKVEQSIKSAEEACEGDPASGECAAAWDEVEE 94
NPS + +T + PL AA + E SI A G+P G A+A E E
Sbjct: 549 NPSLIK--NMQTSHAYCTPLNAALQ--ASMAENSIPLYTTASMGNPTLGNLASAIRE--E 602
Query: 95 LSAAASHARERKKDSDP 111
L+ A H + DS P
Sbjct: 603 LNGAMEHTNSNESDSSP 619
>sp|Q04584|ZYX_CHICK Zyxin OS=Gallus gallus GN=ZYX PE=1 SV=1
Length = 542
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 1 MATIAGVNLSTPSV------FAKITDPKSKVQPSRSLWLNNPSRKRP 41
M T +N+STPS FA + PK KV P ++ + S+ +P
Sbjct: 11 MTTTVSINISTPSFYNPQKKFAPVVAPKPKVNPFKTGGTSESSQPQP 57
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.124 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,287,458
Number of Sequences: 539616
Number of extensions: 1860454
Number of successful extensions: 4633
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 4609
Number of HSP's gapped (non-prelim): 43
length of query: 130
length of database: 191,569,459
effective HSP length: 96
effective length of query: 34
effective length of database: 139,766,323
effective search space: 4752054982
effective search space used: 4752054982
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)