Query 032973
Match_columns 130
No_of_seqs 129 out of 155
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 08:13:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032973.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032973hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00204 CP12 gene family prot 100.0 4.9E-56 1.1E-60 335.0 11.2 126 1-130 1-126 (126)
2 PF02672 CP12: CP12 domain; I 100.0 3.1E-35 6.6E-40 202.3 1.8 70 61-130 1-71 (71)
3 PLN02237 glyceraldehyde-3-phos 79.9 1.6 3.5E-05 39.4 2.8 22 109-130 421-442 (442)
4 PF05873 Mt_ATP-synt_D: ATP sy 79.0 4 8.8E-05 31.7 4.5 63 53-124 82-145 (161)
5 PF03194 LUC7: LUC7 N_terminus 43.0 71 0.0015 26.5 5.5 45 59-104 126-170 (254)
6 KOG3366 Mitochondrial F1F0-ATP 38.3 1.5E+02 0.0033 24.0 6.6 65 51-120 78-143 (172)
7 KOG0796 Spliceosome subunit [R 37.1 64 0.0014 28.4 4.6 37 60-97 126-162 (319)
8 COG3360 Uncharacterized conser 36.3 45 0.00098 23.6 2.9 28 50-77 8-35 (71)
9 PF07165 DUF1397: Protein of u 34.1 34 0.00073 27.6 2.3 63 64-126 8-84 (213)
10 PF09793 AD: Anticodon-binding 25.9 2E+02 0.0044 20.0 4.8 37 59-95 8-46 (91)
11 PF07894 DUF1669: Protein of u 24.3 99 0.0021 26.6 3.5 46 32-77 104-151 (284)
12 PF02942 Flu_B_NS1: Influenza 22.7 29 0.00063 28.8 0.1 22 108-129 96-117 (247)
13 TIGR00165 S18 ribosomal protei 21.7 1.5E+02 0.0031 20.5 3.4 30 47-76 34-63 (70)
14 PF10307 DUF2410: Hypothetical 21.5 57 0.0012 26.5 1.5 22 109-130 120-141 (197)
15 PF11464 Rbsn: Rabenosyn Rab b 20.4 2.4E+02 0.0053 17.9 4.5 35 64-102 7-41 (42)
No 1
>PLN00204 CP12 gene family protein; Provisional
Probab=100.00 E-value=4.9e-56 Score=334.98 Aligned_cols=126 Identities=70% Similarity=1.092 Sum_probs=121.7
Q ss_pred CcccccccccccccccccCCCCcccCcccccccCCCCCCCcccccccceeeecCCCCchhHHHHHHHHHHHHHHHccCCC
Q 032973 1 MATIAGVNLSTPSVFAKITDPKSKVQPSRSLWLNNPSRKRPAQFRTGRMHMQPLRAAPDRISEKVEQSIKSAEEACEGDP 80 (130)
Q Consensus 1 mati~~~~~s~p~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~Ie~aI~eAr~iC~~g~ 80 (130)
||||+||||||||+|++++++|+.+.++ +||+||++. .++|+|+|.++||+++|++|+++|+++|++||++|++|+
T Consensus 1 mat~~~~~~~~~r~~~~~~~~~~~~~~~---~l~~~~~~~-~~~~~~~~~~~~v~a~~~~L~e~Ie~aI~eArevCa~g~ 76 (126)
T PLN00204 1 MATIAGLNLSTPRVLARATDRPKAQGPV---KLNNPWKRG-SRLGSGRMQVRPVRAAPEGISEKVEKSIKEAEETCADDP 76 (126)
T ss_pred CcceecccccCchhhcccCCCcccccee---eccCccccc-ccccCCceEEEeeecCCccHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999987 999999984 467799999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhccccCCCCChHHHHhhhCCCCccccccCC
Q 032973 81 ASGECAAAWDEVEELSAAASHARERKKDSDPLEAYCKDNPETDECRTYED 130 (130)
Q Consensus 81 ~S~eCaaAWDeVEELqAeasHq~~~~~~ktalE~YCdeNPeA~ECRvYDd 130 (130)
+|++|++|||+|||||||++||+++++++|+||+||++|||++|||||||
T Consensus 77 ~S~eCaaAWDeVEELqAeasHqr~~~~~kt~lE~YCdeNPeA~ECRvYDd 126 (126)
T PLN00204 77 ASGECVAAWDEVEELSAAASHARDKKKGSDPLEEYCKDNPETDECRTYED 126 (126)
T ss_pred CCHHHHHHHHHHHHHHHHHHHccccCCCCChHHHHHHHCCCchhhhccCC
Confidence 99999999999999999999999999999999999999999999999997
No 2
>PF02672 CP12: CP12 domain; InterPro: IPR003823 This entry represents an uncharacterised domain in proteins of unknown function. This domain is found associated with CBS domains in some proteins IPR000644 from INTERPRO.; PDB: 3B1K_I 3B1J_D 3RVD_N 3QV1_I 2LJ9_A.
Probab=100.00 E-value=3.1e-35 Score=202.25 Aligned_cols=70 Identities=59% Similarity=1.060 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHccC-CCCCHHHHHHHHHHHHHHHHHHhccccCCCCChHHHHhhhCCCCccccccCC
Q 032973 61 ISEKVEQSIKSAEEACEG-DPASGECAAAWDEVEELSAAASHARERKKDSDPLEAYCKDNPETDECRTYED 130 (130)
Q Consensus 61 L~e~Ie~aI~eAr~iC~~-g~~S~eCaaAWDeVEELqAeasHq~~~~~~ktalE~YCdeNPeA~ECRvYDd 130 (130)
|+++|+++|++||++|++ |.+|++|++|||+|||||++++||+.+++++|+||+||++||+++|||||||
T Consensus 1 l~e~Ie~~i~eA~~~c~~~g~~s~ec~~AWdeVEELqa~~~h~~~~~~~~~~lE~yC~~nPea~EcrvYdd 71 (71)
T PF02672_consen 1 LEEKIEKAIEEAREACAEGGANSAECRHAWDEVEELQAEASHQRQEKKDKTPLELYCDENPEADECRVYDD 71 (71)
T ss_dssp -------------------------------------------------TTCHHHHHHHSTTSTTTTTS--
T ss_pred ChHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHccccCCCCCHHHHHHHHCCCcHHhhhccC
Confidence 689999999999999997 7999999999999999999999999999999999999999999999999997
No 3
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=79.94 E-value=1.6 Score=39.40 Aligned_cols=22 Identities=50% Similarity=1.239 Sum_probs=19.8
Q ss_pred CChHHHHhhhCCCCccccccCC
Q 032973 109 SDPLEAYCKDNPETDECRTYED 130 (130)
Q Consensus 109 ktalE~YCdeNPeA~ECRvYDd 130 (130)
.++++.||+.||+++||++||.
T Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~ 442 (442)
T PLN02237 421 GDPLEDFCKTNPADEECKVYDA 442 (442)
T ss_pred ccchhhhhhcCccccccccccC
Confidence 4588999999999999999984
No 4
>PF05873 Mt_ATP-synt_D: ATP synthase D chain, mitochondrial (ATP5H); InterPro: IPR008689 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit D from the F0 complex in F-ATPases found in mitochondria. The D subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit D in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2CLY_E 2WSS_U.
Probab=79.02 E-value=4 Score=31.70 Aligned_cols=63 Identities=17% Similarity=0.290 Sum_probs=32.0
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHhccccCC-CCChHHHHhhhCCCCcc
Q 032973 53 PLRAAPDRISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKK-DSDPLEAYCKDNPETDE 124 (130)
Q Consensus 53 ~~~~~~~~L~e~Ie~aI~eAr~iC~~g~~S~eCaaAWDeVEELqAeasHq~~~~~-~ktalE~YCdeNPeA~E 124 (130)
|.+.....|+..-.++++++.+... ..=.++++|+.+..+...-.+ +....|.||+.+||...
T Consensus 82 p~d~~~~~i~~~e~~~~~~~~~~~~---------~s~~~i~~l~keL~~i~~~~P~e~mT~dd~~~a~Pe~~~ 145 (161)
T PF05873_consen 82 PVDKQTKEIDAQEKEAIKEAKEFEA---------ESKKRIAELEKELANIESARPFEQMTVDDYAAAFPEIAL 145 (161)
T ss_dssp ---TTTTHHHHHHHHHHHCHHHHHH---------HHHHHHHHHHHHHHHHT----------------------
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHcCCChHhCCHHHHHHhCccccc
Confidence 4455556788888888888888775 556889999999999976544 77889999999998654
No 5
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=43.05 E-value=71 Score=26.47 Aligned_cols=45 Identities=29% Similarity=0.386 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHhccc
Q 032973 59 DRISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARE 104 (130)
Q Consensus 59 ~~L~e~Ie~aI~eAr~iC~~g~~S~eCaaAWDeVEELqAeasHq~~ 104 (130)
..|+++|.+.+++|.+....| .-.++-....+||+|+++..-...
T Consensus 126 ~~l~~~I~~ll~~aE~LGeeG-~VdeA~~~~~~~e~Lk~ek~~le~ 170 (254)
T PF03194_consen 126 DELDEKIGELLKEAEELGEEG-DVDEAQKLMEEVEKLKEEKEELEK 170 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 369999999999999998766 345666889999999888765433
No 6
>KOG3366 consensus Mitochondrial F1F0-ATP synthase, subunit d/ATP7 [Energy production and conversion]
Probab=38.31 E-value=1.5e+02 Score=24.03 Aligned_cols=65 Identities=15% Similarity=0.220 Sum_probs=44.2
Q ss_pred eecCCCCchhHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHhcccc-CCCCChHHHHhhhCC
Q 032973 51 MQPLRAAPDRISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARER-KKDSDPLEAYCKDNP 120 (130)
Q Consensus 51 ~~~~~~~~~~L~e~Ie~aI~eAr~iC~~g~~S~eCaaAWDeVEELqAeasHq~~~-~~~ktalE~YCdeNP 120 (130)
+.|+....+..-++|....+.+-.-|.+ --..-=++++||+.+..|-+.- +-+....|.||+-+|
T Consensus 78 lk~v~~~~~ky~~~vda~~k~~~~~~ke-----~~~~s~~~iq~l~k~le~v~~~~P~demT~ed~~ea~P 143 (172)
T KOG3366|consen 78 LKPVPVDEDKYLKEVDAEEKAAVKEIKE-----YESLSKKRIQELEKELEKVKSARPFDEMTMEDLNEAFP 143 (172)
T ss_pred ccccCCCHHHHHHHhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCcccccHHHHHHhCc
Confidence 3566666666666676666666555531 0111226789999999998654 347888999999999
No 7
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=37.08 E-value=64 Score=28.39 Aligned_cols=37 Identities=38% Similarity=0.445 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Q 032973 60 RISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSA 97 (130)
Q Consensus 60 ~L~e~Ie~aI~eAr~iC~~g~~S~eCaaAWDeVEELqA 97 (130)
.|+++|.+-|++|.++...| +-.+|-.+-++||+|.+
T Consensus 126 ~l~e~I~~~l~~~E~LG~eG-~Veeaq~~~~e~E~lk~ 162 (319)
T KOG0796|consen 126 ELEEKIGKLLEKAEELGEEG-NVEEAQKAMKEVEELKA 162 (319)
T ss_pred HHHHHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHH
Confidence 58899999999999999766 45677788999999987
No 8
>COG3360 Uncharacterized conserved protein [Function unknown]
Probab=36.31 E-value=45 Score=23.61 Aligned_cols=28 Identities=14% Similarity=0.379 Sum_probs=24.6
Q ss_pred eeecCCCCchhHHHHHHHHHHHHHHHcc
Q 032973 50 HMQPLRAAPDRISEKVEQSIKSAEEACE 77 (130)
Q Consensus 50 ~~~~~~~~~~~L~e~Ie~aI~eAr~iC~ 77 (130)
.+..+..+|+++++.|+.+|..|+.+-.
T Consensus 8 ~IelvGtSp~S~d~Ai~~Ai~RA~~t~~ 35 (71)
T COG3360 8 KIELVGTSPTSIDAAIANAIARAADTLD 35 (71)
T ss_pred EEEEEecCCccHHHHHHHHHHHHHhhhh
Confidence 4578899999999999999999998765
No 9
>PF07165 DUF1397: Protein of unknown function (DUF1397); InterPro: IPR009832 This entry consists of several insect specific 27 kDa Haemolymph glycoprotein precursors. The function of this family is unknown [].
Probab=34.07 E-value=34 Score=27.60 Aligned_cols=63 Identities=21% Similarity=0.404 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHccC--CCCC--HHHHHHHHHH----------HHHHHHHHhccccCCCCChHHHHhhhCCCCcccc
Q 032973 64 KVEQSIKSAEEACEG--DPAS--GECAAAWDEV----------EELSAAASHARERKKDSDPLEAYCKDNPETDECR 126 (130)
Q Consensus 64 ~Ie~aI~eAr~iC~~--g~~S--~eCaaAWDeV----------EELqAeasHq~~~~~~ktalE~YCdeNPeA~ECR 126 (130)
.+++..+..|+.|.. |.+. .+=..||..+ .+|+++..-..-..--.+=|..||..-|++.+|.
T Consensus 8 ~~~~~~~~~~~kC~~~~g~~~~~~~i~~a~~~~~~C~~~~vd~~~l~~eie~~~p~g~ld~vF~KyC~k~~~~~~C~ 84 (213)
T PF07165_consen 8 SLEEIKKMLREKCKKNGGSDAAYEEIEEAAQQLPECLSGLVDLTQLQQEIEEAKPTGDLDEVFNKYCPKRPQAKECF 84 (213)
T ss_pred hHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHcCccccHHHHHHHHhHhhHHHHHHH
Confidence 677778888888985 3222 2455666554 5678887766522223678999999999988884
No 10
>PF09793 AD: Anticodon-binding domain; InterPro: IPR019181 Sm and Sm-like proteins of the Lsm (like Sm) domain family are generally involved in essential RNA-processing tasks []. All the LSM proteins are evolutionarily conserved in eukaryotes with an N-terminal Lsm domain to bind nucleic acids, followed by an as yet uncharacterised C-terminal region, some of which have a C-terminal methyltransferase domain. This entry represents the central region of approximately 100 residues, which is conserved from plants to humans and is frequently found in association with Lsm domain-containing proteins.
Probab=25.86 E-value=2e+02 Score=19.96 Aligned_cols=37 Identities=16% Similarity=0.329 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHHHHHccC-C-CCCHHHHHHHHHHHHH
Q 032973 59 DRISEKVEQSIKSAEEACEG-D-PASGECAAAWDEVEEL 95 (130)
Q Consensus 59 ~~L~e~Ie~aI~eAr~iC~~-g-~~S~eCaaAWDeVEEL 95 (130)
+.|+++++++|++++..... | ..|.+.....|.+-..
T Consensus 8 ~~l~~r~~~ai~~~~~~~~~~~~~vs~egQ~lF~~l~Kt 46 (91)
T PF09793_consen 8 ERLQKRLRKAIEEAKRKLSSIGPGVSPEGQKLFDALSKT 46 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHhh
Confidence 46999999999999999885 4 6889998888877644
No 11
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=24.32 E-value=99 Score=26.64 Aligned_cols=46 Identities=22% Similarity=0.211 Sum_probs=33.2
Q ss_pred ccCCCCCCCcccccccce--eeecCCCCchhHHHHHHHHHHHHHHHcc
Q 032973 32 WLNNPSRKRPAQFRTGRM--HMQPLRAAPDRISEKVEQSIKSAEEACE 77 (130)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~L~e~Ie~aI~eAr~iC~ 77 (130)
-|--.|.-.....|..|+ .+.|......+|.|.|.+-|++|+++=+
T Consensus 104 ~LdLGWP~~~~~~g~Tr~~vy~qPp~~~~p~IKE~vR~~I~~A~kVIA 151 (284)
T PF07894_consen 104 PLDLGWPETPSYKGVTRATVYFQPPKDGQPHIKEVVRRMIQQAQKVIA 151 (284)
T ss_pred CCCCCCCCCCcccCCceEEEEeCCCCCCCCCHHHHHHHHHHHhcceeE
Confidence 366677664544566666 4466554445899999999999999877
No 12
>PF02942 Flu_B_NS1: Influenza B non-structural protein (NS1); InterPro: IPR004208 A specific region of the Influenza B virus NS1 protein, which includes part of its effector domain, blocks the covalent linkage of mouse ISG15 to its target proteins both in vitro and in infected cells. Of the several hundred proteins induced by interferon (IFN) alpha/beta, the ubiquitin-like ISG15 protein is one of the most predominant. Influenza A virus employs a different strategy: its NS1 protein does not bind the ISG15 protein, but little or no ISG15 protein is produced during infection [].; PDB: 3RT3_C 3R66_A 3SDL_A 1XEQ_A.
Probab=22.73 E-value=29 Score=28.84 Aligned_cols=22 Identities=27% Similarity=0.679 Sum_probs=3.1
Q ss_pred CCChHHHHhhhCCCCccccccC
Q 032973 108 DSDPLEAYCKDNPETDECRTYE 129 (130)
Q Consensus 108 ~ktalE~YCdeNPeA~ECRvYD 129 (130)
.-.-||-||-.||..-.|--||
T Consensus 96 giegfepyc~knps~s~~pn~~ 117 (247)
T PF02942_consen 96 GIEGFEPYCVKNPSNSNCPNCI 117 (247)
T ss_dssp TGGGG-----------------
T ss_pred CcccCcchhccCCccCCCCCCc
Confidence 3457999999999999998775
No 13
>TIGR00165 S18 ribosomal protein S18. This ribosomal small subunit protein is found in all eubacteria so far, as well as in chloroplasts. YER050C from Saccharomyces cerevisiae and a related protein from Caenorhabditis elegans appear to be homologous and may represent mitochondrial forms. The trusted cutoff is set high enough that these two candidate S18 proteins are not categorized automatically.
Probab=21.73 E-value=1.5e+02 Score=20.54 Aligned_cols=30 Identities=13% Similarity=0.313 Sum_probs=23.2
Q ss_pred cceeeecCCCCchhHHHHHHHHHHHHHHHc
Q 032973 47 GRMHMQPLRAAPDRISEKVEQSIKSAEEAC 76 (130)
Q Consensus 47 ~~~~~~~~~~~~~~L~e~Ie~aI~eAr~iC 76 (130)
|++.-+-+......-|.+|.++|+.||.+.
T Consensus 34 GkIlpRriTgl~~k~Qr~l~~aIKrAR~~~ 63 (70)
T TIGR00165 34 GKILPRRITGTSAKYQRRLARAIKRARYLA 63 (70)
T ss_pred CeEcCCccCCcCHHHHHHHHHHHHHHHHHh
Confidence 565445566666678999999999999875
No 14
>PF10307 DUF2410: Hypothetical protein (DUF2410); InterPro: IPR018812 This entry represents a family of proteins conserved in fungi whose function is not known. There are two characteristic sequence motifs, GGWW and TGR.
Probab=21.48 E-value=57 Score=26.53 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=18.6
Q ss_pred CChHHHHhhhCCCCccccccCC
Q 032973 109 SDPLEAYCKDNPETDECRTYED 130 (130)
Q Consensus 109 ktalE~YCdeNPeA~ECRvYDd 130 (130)
+.-|..+-+-|+.+.|.+||||
T Consensus 120 ~~~l~~ll~~Y~~~~eI~IYeD 141 (197)
T PF10307_consen 120 QAFLEDLLHTYKNAEEIRIYED 141 (197)
T ss_pred HHHHHHHHHhcCCCCEEEEEcC
Confidence 3457788888999999999997
No 15
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=20.35 E-value=2.4e+02 Score=17.89 Aligned_cols=35 Identities=26% Similarity=0.250 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHhc
Q 032973 64 KVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHA 102 (130)
Q Consensus 64 ~Ie~aI~eAr~iC~~g~~S~eCaaAWDeVEELqAeasHq 102 (130)
-|+.-|++|+..+- -.|...-=.-+.||+.+...|
T Consensus 7 ~I~~~I~qAk~~~r----~dEV~~L~~NL~EL~~e~~~q 41 (42)
T PF11464_consen 7 IIESYIKQAKAARR----FDEVATLEENLRELQDEIDEQ 41 (42)
T ss_dssp HHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC----cHHHHHHHHHHHHHHHHHHhc
Confidence 46777999998774 445555555566666665544
Done!