Query 032973
Match_columns 130
No_of_seqs 129 out of 155
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 13:17:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032973.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032973hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lj9_A CP12 domain-containing 100.0 1.6E-37 5.5E-42 225.5 2.2 86 45-130 11-99 (99)
2 3qv1_G CP12 protein; rossman f 100.0 9.9E-37 3.4E-41 215.0 2.1 74 57-130 6-82 (82)
3 3b1j_C CP12; alpha/beta fold, 99.4 1.6E-13 5.6E-18 78.6 2.2 24 107-130 2-25 (26)
4 2cly_B ATP synthase D chain, m 73.4 5.8 0.0002 29.8 5.1 63 52-123 80-143 (160)
5 2d2i_A Glyceraldehyde 3-phosph 67.1 2.7 9.3E-05 35.5 2.3 40 89-128 320-359 (380)
6 2cc6_A VNG1446H, dodecin; flav 23.8 37 0.0012 22.5 1.7 26 51-76 6-31 (68)
7 2ux9_A Dodecin; flavoprotein; 23.7 37 0.0013 22.6 1.7 27 50-76 7-33 (69)
8 2yiz_A Dodecin; flavoprotein, 23.2 40 0.0014 22.4 1.8 27 50-76 7-33 (69)
9 2vxa_A Dodecin; flavoprotein, 22.4 40 0.0014 22.6 1.7 27 50-76 8-34 (72)
10 3onr_A Protein transport prote 21.7 42 0.0014 22.5 1.7 26 51-76 8-33 (72)
11 1z0k_B FYVE-finger-containing 20.1 1.9E+02 0.0064 19.3 4.6 36 64-103 31-66 (69)
No 1
>2lj9_A CP12 domain-containing protein 2; helix, protein binding, intrinsically disordered protein; NMR {Arabidopsis thaliana}
Probab=100.00 E-value=1.6e-37 Score=225.48 Aligned_cols=86 Identities=67% Similarity=1.102 Sum_probs=21.6
Q ss_pred cccceeeecCCCCch-hHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHhccccCCC--CChHHHHhhhCCC
Q 032973 45 RTGRMHMQPLRAAPD-RISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKKD--SDPLEAYCKDNPE 121 (130)
Q Consensus 45 ~~~~~~~~~~~~~~~-~L~e~Ie~aI~eAr~iC~~g~~S~eCaaAWDeVEELqAeasHq~~~~~~--ktalE~YCdeNPe 121 (130)
.+|++...++++++. +|+++|+++|++||++|++|++|++|++|||+||||||+++||+.++++ +|+||+||++|||
T Consensus 11 ~~~~~~~~~~~~p~~~~L~e~Ie~ai~eAr~~Ca~g~~S~eCa~AWd~VEELqAeashqr~~~~~~~~t~lE~yCdeNPe 90 (99)
T 2lj9_A 11 SSGLVPRGSHMAAPEGGISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDKKKADGSDPLEEYCKDNPE 90 (99)
T ss_dssp -------------------------------------------------------------------CCHHHHHHHHCTT
T ss_pred ccCccCccccCCCchHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhChhccccCCCChHHHHHHHCCC
Confidence 456666666666555 6999999999999999999999999999999999999999999999887 9999999999999
Q ss_pred CccccccCC
Q 032973 122 TDECRTYED 130 (130)
Q Consensus 122 A~ECRvYDd 130 (130)
++|||||||
T Consensus 91 a~ECrvYDd 99 (99)
T 2lj9_A 91 TNECRTYDN 99 (99)
T ss_dssp TTSTTTSCC
T ss_pred chHHhhccC
Confidence 999999997
No 2
>3qv1_G CP12 protein; rossman fold, calvin cycle, NAD, chloroplast, oxidoreductase binding complex; HET: NAD; 2.00A {Arabidopsis thaliana} PDB: 3rvd_I*
Probab=100.00 E-value=9.9e-37 Score=215.00 Aligned_cols=74 Identities=76% Similarity=1.270 Sum_probs=20.7
Q ss_pred Cch-hHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHhccccCC--CCChHHHHhhhCCCCccccccCC
Q 032973 57 APD-RISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKK--DSDPLEAYCKDNPETDECRTYED 130 (130)
Q Consensus 57 ~~~-~L~e~Ie~aI~eAr~iC~~g~~S~eCaaAWDeVEELqAeasHq~~~~~--~ktalE~YCdeNPeA~ECRvYDd 130 (130)
+|+ +|+++|+++|++||++|++|.+|++|++|||+|||||||++|||.+++ ++|+||+||++||+++|||||||
T Consensus 6 ~~~~~l~e~Ie~~I~~Ar~ic~~~~~S~eCa~AWdeVEELqaeash~~~~~~a~~~t~lE~yC~~nPea~ECr~Ydd 82 (82)
T 3qv1_G 6 APEGGISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDKKKADGSDPLEEYCKDNPETNECRTYDN 82 (82)
T ss_dssp --------------------------------------------------------CHHHHHHHHCTTSTTTCCCCC
T ss_pred CcchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHcccccccCCCChHHHHHHHCCCchHhhhcCC
Confidence 444 499999999999999999999999999999999999999999999998 89999999999999999999997
No 3
>3b1j_C CP12; alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_C*
Probab=99.37 E-value=1.6e-13 Score=78.55 Aligned_cols=24 Identities=33% Similarity=0.858 Sum_probs=21.4
Q ss_pred CCCChHHHHhhhCCCCccccccCC
Q 032973 107 KDSDPLEAYCKDNPETDECRTYED 130 (130)
Q Consensus 107 ~~ktalE~YCdeNPeA~ECRvYDd 130 (130)
+++++||.||++||+++||||||+
T Consensus 2 ~~~t~lE~yC~enPea~Ecr~yd~ 25 (26)
T 3b1j_C 2 ETEPFFGDYCSENPDAAECLIYDD 25 (26)
T ss_dssp --CTTHHHHHHHCTTSTTTCCCCC
T ss_pred CcccHHHHHHHHCCCcHHHHhhcc
Confidence 579999999999999999999996
No 4
>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.53.1.1 PDB: 2wss_U*
Probab=73.44 E-value=5.8 Score=29.80 Aligned_cols=63 Identities=17% Similarity=0.200 Sum_probs=33.6
Q ss_pred ecCCCCchhHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHhccccCC-CCChHHHHhhhCCCCc
Q 032973 52 QPLRAAPDRISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKK-DSDPLEAYCKDNPETD 123 (130)
Q Consensus 52 ~~~~~~~~~L~e~Ie~aI~eAr~iC~~g~~S~eCaaAWDeVEELqAeasHq~~~~~-~ktalE~YCdeNPeA~ 123 (130)
.|++.....|+.+-.+++++|.+.-. ..=.++++|+.+..+.+.-.+ +.-..|.||+.+||..
T Consensus 80 ~~~d~~~~~i~a~e~~~~~~a~~~~~---------~s~~ri~~lekeL~~i~~~~P~~~mT~dd~~~a~Pe~~ 143 (160)
T 2cly_B 80 IPEDKYTAQVDAEEKEDVKSCAEFLT---------QSKTRIQEYEKELEKMRNIIPFDQMTIEDLNEVFPETK 143 (160)
T ss_dssp CCCCCCTTHHHHHHHHHHHTHHHHHH---------HHHHHHHHHHHHHHHHTC--------------------
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHcCCChHhCCHHHHHHhCchhc
Confidence 35555555788888888888888775 455788999999999876544 7788999999999864
No 5
>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A
Probab=67.07 E-value=2.7 Score=35.51 Aligned_cols=40 Identities=8% Similarity=0.057 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHhccccCCCCChHHHHhhhCCCCcccccc
Q 032973 89 WDEVEELSAAASHARERKKDSDPLEAYCKDNPETDECRTY 128 (130)
Q Consensus 89 WDeVEELqAeasHq~~~~~~ktalE~YCdeNPeA~ECRvY 128 (130)
|.--..+-.-+.|...+...-+++|.||..||+..||++|
T Consensus 320 ~gys~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (380)
T 2d2i_A 320 WGYSQRVVDLAELAARKSGRLGLVQTLLISSQDSLPLTGG 359 (380)
T ss_dssp HHHHHHHHHHHHHHHTTCC---------------------
T ss_pred cchHhHHHHHHHHHHhhcccccccccccccCccccccccc
Confidence 5444444333444432224578999999999999999998
No 6
>2cc6_A VNG1446H, dodecin; flavoprotein, flavin, flavin-like ligands; HET: LUM; 1.27A {Halobacterium salinarum} SCOP: d.230.2.1 PDB: 2cc7_A* 2cc8_A* 2cc9_A 2ccb_A* 2ccc_A* 2cif_A* 2cjc_A* 1mog_A* 2vx9_A* 2cie_A* 2vkf_A* 2vkg_A*
Probab=23.83 E-value=37 Score=22.53 Aligned_cols=26 Identities=12% Similarity=0.234 Sum_probs=21.8
Q ss_pred eecCCCCchhHHHHHHHHHHHHHHHc
Q 032973 51 MQPLRAAPDRISEKVEQSIKSAEEAC 76 (130)
Q Consensus 51 ~~~~~~~~~~L~e~Ie~aI~eAr~iC 76 (130)
+.-+..+++++++-|+.+|+.|.++=
T Consensus 6 iElvGsS~~S~edAi~nAi~~AskTl 31 (68)
T 2cc6_A 6 VLLTGTSEESFTAAADDAIDRAEDTL 31 (68)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCHHHHHHHHHHHHHhcc
Confidence 45677788899999999999998764
No 7
>2ux9_A Dodecin; flavoprotein; HET: FMN COA; 1.4A {Thermus thermophilus} SCOP: d.230.2.1 PDB: 2cz8_A* 2deg_A 2deh_A 2dev_A 2v21_A* 2v18_A* 2vyx_A* 2v19_A*
Probab=23.69 E-value=37 Score=22.57 Aligned_cols=27 Identities=4% Similarity=0.235 Sum_probs=22.6
Q ss_pred eeecCCCCchhHHHHHHHHHHHHHHHc
Q 032973 50 HMQPLRAAPDRISEKVEQSIKSAEEAC 76 (130)
Q Consensus 50 ~~~~~~~~~~~L~e~Ie~aI~eAr~iC 76 (130)
.+.-+...++++++-|+.+|+.|.++=
T Consensus 7 viElvGsS~~S~edAi~nAi~~AskTl 33 (69)
T 2ux9_A 7 KVELVGTSEEGLEAAIQAALARARKTL 33 (69)
T ss_dssp EEEEEEEESSCHHHHHHHHHHHHHHHC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhcc
Confidence 346778888999999999999998754
No 8
>2yiz_A Dodecin; flavoprotein, flavin binding protein, protein-engineering, P storage protein; HET: COA FMN GOL; 1.70A {Mycobacterium tuberculosis} PDB: 3oqt_A 2yj0_A*
Probab=23.17 E-value=40 Score=22.40 Aligned_cols=27 Identities=11% Similarity=0.332 Sum_probs=22.6
Q ss_pred eeecCCCCchhHHHHHHHHHHHHHHHc
Q 032973 50 HMQPLRAAPDRISEKVEQSIKSAEEAC 76 (130)
Q Consensus 50 ~~~~~~~~~~~L~e~Ie~aI~eAr~iC 76 (130)
.+.-+...++++++-|+.+|+.|.++=
T Consensus 7 viElvGsS~~S~edAi~nAi~~AskTl 33 (69)
T 2yiz_A 7 VIEIVGTSPDGVDAAIQGGLARAAQTM 33 (69)
T ss_dssp EEEEEEEETTCHHHHHHHHHHHHHHHC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhcc
Confidence 346778888999999999999998754
No 9
>2vxa_A Dodecin; flavoprotein, flavin, riboflavin, lumichrome, archaea; HET: RBF; 2.60A {Halorhodospira halophila}
Probab=22.45 E-value=40 Score=22.56 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=22.8
Q ss_pred eeecCCCCchhHHHHHHHHHHHHHHHc
Q 032973 50 HMQPLRAAPDRISEKVEQSIKSAEEAC 76 (130)
Q Consensus 50 ~~~~~~~~~~~L~e~Ie~aI~eAr~iC 76 (130)
.+.-+...++++++-|+.+|+.|.++=
T Consensus 8 viElvGsS~~S~edAi~nAi~~AskTl 34 (72)
T 2vxa_A 8 IVELTGSSPNGIEEAVNNAIARAGETL 34 (72)
T ss_dssp EEEEEEEESSCHHHHHHHHHHHHHHHC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhhc
Confidence 346788888999999999999998764
No 10
>3onr_A Protein transport protein SECE2; calcium dodecin, calcium binding protein, dodecamer, imuuno antigen, metal binding protein; 1.80A {Mycobacterium tuberculosis}
Probab=21.71 E-value=42 Score=22.47 Aligned_cols=26 Identities=8% Similarity=0.326 Sum_probs=22.1
Q ss_pred eecCCCCchhHHHHHHHHHHHHHHHc
Q 032973 51 MQPLRAAPDRISEKVEQSIKSAEEAC 76 (130)
Q Consensus 51 ~~~~~~~~~~L~e~Ie~aI~eAr~iC 76 (130)
+.-+..+++++++-|+.+|+.|.++=
T Consensus 8 iElvGsS~~S~edAi~nAi~~AskTl 33 (72)
T 3onr_A 8 IDIIGTSPTSWEQAAAEAVQRARDSV 33 (72)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCHHHHHHHHHHHHHhcc
Confidence 46677888899999999999998764
No 11
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=20.14 E-value=1.9e+02 Score=19.25 Aligned_cols=36 Identities=14% Similarity=0.216 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHhcc
Q 032973 64 KVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHAR 103 (130)
Q Consensus 64 ~Ie~aI~eAr~iC~~g~~S~eCaaAWDeVEELqAeasHq~ 103 (130)
.|+.-|++|+..+- -.|.+--=.-+.||+.+..++.
T Consensus 31 ~I~~yI~qAk~~~r----~DEV~tLe~NLrEL~~ei~~~q 66 (69)
T 1z0k_B 31 NITSFIRQAKAAGR----MDEVRTLQENLRQLQDEYDQQQ 66 (69)
T ss_dssp HHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC----cHHHHHHHHHHHHHHHHHHHHh
Confidence 36677999999885 5566666667778888877665
Done!