BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032975
         (130 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q24574|UBPE_DROME Ubiquitin carboxyl-terminal hydrolase 64E OS=Drosophila melanogaster
            GN=Ubp64E PE=1 SV=2
          Length = 1556

 Score = 33.1 bits (74), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 13/121 (10%)

Query: 8    SYRGGGGDGRMQIENYSNGPTTTGPSSYGI--NSMQDLRCY---SASYAAASVTVP---P 59
            ++RGGG     Q+ + S+ P  + P       ++M  +  Y   + SYAAA V  P   P
Sbjct: 1121 AHRGGGDS---QVSSTSHSPQLSSPEDEAASHDAMMRVHAYCNGNGSYAAADVVDPLLLP 1177

Query: 60   LNNSNDFKLKKGKSTS--GSTSKSWSFNDPELQRKKRVASYKVYTVEGKVKGSFKKSFRW 117
             + ++ F   K +     G+ S S   +D E Q +K   +YK+        G+FKK    
Sbjct: 1178 TSTNHFFYATKVECVDVVGTGSSSGHQSDEEAQLRKPTRAYKLLVGTHMRMGAFKKHIEQ 1237

Query: 118  I 118
            +
Sbjct: 1238 L 1238


>sp|Q61W58|HSP90_CAEBR Heat shock protein 90 OS=Caenorhabditis briggsae GN=daf-21 PE=3
           SV=1
          Length = 706

 Score = 30.8 bits (68), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 46  YSASYAAASVTVPPLNNSNDFKLKKGKSTSGSTSKSWSFNDPELQRKKRVASY 98
           YSA   A  V V   NN +D    + +S++G +     +NDPEL R  ++  Y
Sbjct: 127 YSAFLVADKVVVTSKNNDDDSY--QWESSAGGSFVVRPYNDPELTRGTKITMY 177


>sp|P42680|TEC_HUMAN Tyrosine-protein kinase Tec OS=Homo sapiens GN=TEC PE=1 SV=2
          Length = 631

 Score = 30.4 bits (67), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 9/119 (7%)

Query: 9   YRGGGGDGRMQIENYSNGPTTTGPSSY------GINSMQDLRCYSASYAAASVTVPPLNN 62
           Y   GG+G     +Y    TTT P  Y         S+ ++  Y    AA  VT   L  
Sbjct: 286 YTKFGGEGSSGFRHYHIKETTTSPKKYYLAEKHAFGSIPEIIEYHKHNAAGLVT--RLRY 343

Query: 63  SNDFKLKKGKSTSGSTSKSWSFNDPELQRKKRVASYKVYTVE-GKVKGSFKKSFRWIKD 120
               K K   +T+G + + W  N  EL   + + S     V  GK +  +K + + I++
Sbjct: 344 PVSVKGKNAPTTAGFSYEKWEINPSELTFMRELGSGLFGVVRLGKWRAQYKVAIKAIRE 402


>sp|Q80Y19|RHGBA_MOUSE Rho GTPase-activating protein 11A OS=Mus musculus GN=Arhgap11a PE=1
           SV=2
          Length = 987

 Score = 29.3 bits (64), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 14/24 (58%), Positives = 16/24 (66%)

Query: 88  ELQRKKRVASYKVYTVEGKVKGSF 111
           EL+R KR+AS KVY VE    G F
Sbjct: 396 ELRRSKRIASKKVYRVESGKAGCF 419


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.129    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,071,105
Number of Sequences: 539616
Number of extensions: 1975278
Number of successful extensions: 4056
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 4041
Number of HSP's gapped (non-prelim): 34
length of query: 130
length of database: 191,569,459
effective HSP length: 96
effective length of query: 34
effective length of database: 139,766,323
effective search space: 4752054982
effective search space used: 4752054982
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)