Query 032975
Match_columns 130
No_of_seqs 89 out of 104
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 08:14:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032975.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032975hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12023 DUF3511: Domain of un 100.0 3.7E-32 8E-37 177.2 1.7 47 82-128 1-47 (47)
2 PF10856 DUF2678: Protein of u 32.2 30 0.00064 26.7 1.6 9 1-9 1-9 (118)
3 PF07849 DUF1641: Protein of u 18.0 56 0.0012 20.2 0.6 9 84-92 20-28 (42)
4 PF08255 Leader_Trp: Trp-opero 16.4 38 0.00083 17.6 -0.3 6 125-130 6-11 (14)
5 cd07402 MPP_GpdQ Enterobacter 15.0 85 0.0018 23.5 1.1 32 75-106 207-239 (240)
6 PF01372 Melittin: Melittin; 13.5 71 0.0015 19.0 0.2 9 114-122 16-24 (26)
7 PF15625 CC2D2AN-C2: CC2D2A N- 11.8 1.2E+02 0.0026 23.1 1.1 17 85-101 24-40 (168)
8 PF09292 Neil1-DNA_bind: Endon 10.6 99 0.0022 19.9 0.2 10 42-51 8-17 (39)
9 PF01849 NAC: NAC domain; Int 10.3 69 0.0015 20.5 -0.6 25 81-108 31-55 (58)
10 PF15271 BBP1_N: Spindle pole 10.0 2E+02 0.0044 22.8 1.8 22 71-92 45-66 (145)
No 1
>PF12023 DUF3511: Domain of unknown function (DUF3511); InterPro: IPR021899 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 50 amino acids in length. This domain has two completely conserved residues (Y and K) that may be functionally important.
Probab=99.97 E-value=3.7e-32 Score=177.18 Aligned_cols=47 Identities=79% Similarity=1.425 Sum_probs=46.5
Q ss_pred cccCChhhhhhhhhceeeeeeeecccchhhcccchhhhhhhcccccc
Q 032975 82 WSFNDPELQRKKRVASYKVYTVEGKVKGSFKKSFRWIKDRCSRMVHG 128 (130)
Q Consensus 82 w~~~dpE~kRkkRVA~Yk~y~vEGKvK~S~r~sfrWiK~k~s~iv~G 128 (130)
|+|+|||+|||||||+||+|+||||||+|||+||||||+||++||||
T Consensus 1 w~~~dpE~kRkkRVA~Yk~y~vEGKvK~S~R~sfrWiK~k~s~iv~G 47 (47)
T PF12023_consen 1 WGFNDPEMKRKKRVASYKVYAVEGKVKGSLRKSFRWIKNKCSRIVYG 47 (47)
T ss_pred CCCCCHHHHHHHHHHhhheeeeehHHHHHHHhhhHHHHHHhhHhhcC
Confidence 89999999999999999999999999999999999999999999998
No 2
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=32.24 E-value=30 Score=26.68 Aligned_cols=9 Identities=67% Similarity=1.331 Sum_probs=8.8
Q ss_pred CCccccccc
Q 032975 1 MDDFRSRSY 9 (130)
Q Consensus 1 MEdfRSkSy 9 (130)
||||+.+.|
T Consensus 1 ~~~~~~~~~ 9 (118)
T PF10856_consen 1 MDDFTTRTY 9 (118)
T ss_pred CCccccccc
Confidence 999999999
No 3
>PF07849 DUF1641: Protein of unknown function (DUF1641); InterPro: IPR012440 Archaeal and bacterial hypothetical proteins are found in this family, with the region in question being approximately 40 residues long.
Probab=18.02 E-value=56 Score=20.20 Aligned_cols=9 Identities=44% Similarity=0.940 Sum_probs=7.6
Q ss_pred cCChhhhhh
Q 032975 84 FNDPELQRK 92 (130)
Q Consensus 84 ~~dpE~kRk 92 (130)
+.|||+||=
T Consensus 20 l~Dpdvqrg 28 (42)
T PF07849_consen 20 LRDPDVQRG 28 (42)
T ss_pred HcCHHHHHH
Confidence 499999985
No 4
>PF08255 Leader_Trp: Trp-operon Leader Peptide; InterPro: IPR013205 The tryptophan operon regulatory region of Citrobacter freundii (leader transcript) encodes a 14-residue peptide containing characteristic tandem tryptophan residues. It is about 10 nucleotides shorter than those of Escherichia coli and Salmonella typhimurium [].
Probab=16.45 E-value=38 Score=17.58 Aligned_cols=6 Identities=67% Similarity=2.295 Sum_probs=4.3
Q ss_pred cccccC
Q 032975 125 MVHGWW 130 (130)
Q Consensus 125 iv~G~w 130 (130)
+.+|||
T Consensus 6 ~L~~WW 11 (14)
T PF08255_consen 6 SLHGWW 11 (14)
T ss_pred EEeeEE
Confidence 467887
No 5
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=15.05 E-value=85 Score=23.51 Aligned_cols=32 Identities=13% Similarity=0.221 Sum_probs=25.2
Q ss_pred CCCCccccccCChhhhhhhhhceeeeeee-ecc
Q 032975 75 SGSTSKSWSFNDPELQRKKRVASYKVYTV-EGK 106 (130)
Q Consensus 75 ~~~~s~sw~~~dpE~kRkkRVA~Yk~y~v-EGK 106 (130)
.++.+-.|...+|+..|--+.+.|+.|.+ |++
T Consensus 207 ~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (240)
T cd07402 207 APSTCHQFAPDLDDFALDALAPGYRALSLHEDG 239 (240)
T ss_pred cCcceeeecCCCCcccccccCCCCcEEEEecCC
Confidence 34445566678899999999999999998 654
No 6
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=13.47 E-value=71 Score=18.95 Aligned_cols=9 Identities=33% Similarity=0.844 Sum_probs=6.8
Q ss_pred cchhhhhhh
Q 032975 114 SFRWIKDRC 122 (130)
Q Consensus 114 sfrWiK~k~ 122 (130)
-+.|||+|-
T Consensus 16 lISWIK~kr 24 (26)
T PF01372_consen 16 LISWIKNKR 24 (26)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 367999874
No 7
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=11.79 E-value=1.2e+02 Score=23.07 Aligned_cols=17 Identities=29% Similarity=0.515 Sum_probs=14.9
Q ss_pred CChhhhhhhhhceeeee
Q 032975 85 NDPELQRKKRVASYKVY 101 (130)
Q Consensus 85 ~dpE~kRkkRVA~Yk~y 101 (130)
.-.|.+||++|.+++.|
T Consensus 24 p~~E~~RR~~~~~~~~~ 40 (168)
T PF15625_consen 24 PRAEQNRRQRVQKTRYY 40 (168)
T ss_pred ChhHhhhHHHhhheeEE
Confidence 34799999999999988
No 8
>PF09292 Neil1-DNA_bind: Endonuclease VIII-like 1, DNA bind; InterPro: IPR015371 This domain is predominantly found in Endonuclease VIII-like 1 proteins and adopts a glucocorticoid receptor-like fold. Structural analysis reveals a zincless finger motif that is required for glycosylase activity []. ; PDB: 1TDH_A.
Probab=10.63 E-value=99 Score=19.87 Aligned_cols=10 Identities=40% Similarity=0.587 Sum_probs=5.1
Q ss_pred cccccccccc
Q 032975 42 DLRCYSASYA 51 (130)
Q Consensus 42 DLRsYSaSYA 51 (130)
=||||++.--
T Consensus 8 WLqCY~v~gM 17 (39)
T PF09292_consen 8 WLQCYSVPGM 17 (39)
T ss_dssp H-SSTT-TT-
T ss_pred HHHHhccccc
Confidence 3899996543
No 9
>PF01849 NAC: NAC domain; InterPro: IPR002715 Nascent polypeptide-associated complex (NAC) is among the first ribosome-associated entities to bind the nascent polypeptide after peptide bond formation. The nascent polypeptide-associated complex (NAC) of yeast functions in the targeting process of ribosomes to the ER membrane []. NAC may prevent binding of ribosome nascent chains (RNCs) without a signal sequence to yeast membranes.; PDB: 3MCE_D 3MCB_A 3LKX_B 1TR8_B.
Probab=10.26 E-value=69 Score=20.54 Aligned_cols=25 Identities=32% Similarity=0.640 Sum_probs=20.5
Q ss_pred ccccCChhhhhhhhhceeeeeeeecccc
Q 032975 81 SWSFNDPELQRKKRVASYKVYTVEGKVK 108 (130)
Q Consensus 81 sw~~~dpE~kRkkRVA~Yk~y~vEGKvK 108 (130)
.+-|++|+++ ....-+.|.|-|..+
T Consensus 31 ~~~~~~P~V~---~~~~~~tyvV~G~~~ 55 (58)
T PF01849_consen 31 VFVFNNPEVQ---KSPGSNTYVVFGEAE 55 (58)
T ss_dssp EEEEESEEEE---EETTCCEEEEESEEE
T ss_pred EEEEcCCeEE---EcCCCCEEEEEeeeE
Confidence 4568999999 677789999998765
No 10
>PF15271 BBP1_N: Spindle pole body component BBP1, Mps2-binding protein
Probab=10.03 E-value=2e+02 Score=22.83 Aligned_cols=22 Identities=41% Similarity=0.465 Sum_probs=16.5
Q ss_pred CcccCCCCccccccCChhhhhh
Q 032975 71 GKSTSGSTSKSWSFNDPELQRK 92 (130)
Q Consensus 71 gKS~~~~~s~sw~~~dpE~kRk 92 (130)
+.....+.+.||+.-||++-+|
T Consensus 45 ~~~~~rsRSnSwsg~D~~Fy~k 66 (145)
T PF15271_consen 45 SSERSRSRSNSWSGLDSSFYRK 66 (145)
T ss_pred cccccccCCCCCCCCChhHHHH
Confidence 4445557778998889998876
Done!