Query 032975
Match_columns 130
No_of_seqs 89 out of 104
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 13:19:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032975.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032975hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ifp_A PF3 inovirus, major coa 22.0 20 0.00068 22.4 0.1 13 110-122 31-43 (44)
2 4g6v_B CDII; tRNAse, toxin, im 20.3 21 0.00071 26.2 -0.1 8 41-48 3-10 (111)
3 1dul_A Signal recognition part 13.1 64 0.0022 21.2 0.9 8 90-97 36-43 (69)
4 1mfq_C SRP54, signal recogniti 10.4 76 0.0026 23.3 0.6 11 87-97 81-96 (129)
5 1hq1_A Signal recognition part 10.2 80 0.0027 22.2 0.7 13 85-97 62-77 (105)
6 3qrx_B Melittin; calcium-bindi 10.1 68 0.0023 18.2 0.2 9 114-122 16-24 (26)
7 3c01_A Surface presentation of 9.7 1E+02 0.0035 19.1 1.0 11 85-95 15-25 (48)
8 3gk6_A Integron cassette prote 8.7 1.2E+02 0.0042 21.2 1.2 25 96-120 113-137 (170)
9 3bzy_A ESCU; auto cleavage pro 7.3 1.5E+02 0.0051 18.9 1.0 11 85-95 21-31 (54)
10 2vt1_A Surface presentation of 6.2 1.1E+02 0.0039 19.2 0.0 13 85-97 19-31 (52)
No 1
>1ifp_A PF3 inovirus, major coat protein assembly; virus coat protein, helical virus; 3.10A {Pseudomonas phage PF3} SCOP: h.1.4.1
Probab=22.02 E-value=20 Score=22.41 Aligned_cols=13 Identities=31% Similarity=0.649 Sum_probs=9.4
Q ss_pred hhcccchhhhhhh
Q 032975 110 SFKKSFRWIKDRC 122 (130)
Q Consensus 110 S~r~sfrWiK~k~ 122 (130)
.+--++||||..+
T Consensus 31 avvlgirwikaqf 43 (44)
T 1ifp_A 31 AVVLGIRWIKAQF 43 (44)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHhHHhHhhc
Confidence 3445899999765
No 2
>4g6v_B CDII; tRNAse, toxin, immunity; 2.64A {Burkholderia pseudomallei 1026A}
Probab=20.32 E-value=21 Score=26.19 Aligned_cols=8 Identities=50% Similarity=0.912 Sum_probs=6.7
Q ss_pred cccccccc
Q 032975 41 QDLRCYSA 48 (130)
Q Consensus 41 ~DLRsYSa 48 (130)
-|||||++
T Consensus 3 IDlrCY~t 10 (111)
T 4g6v_B 3 IDLFCYLS 10 (111)
T ss_dssp CEEEEEES
T ss_pred eeEEEEEe
Confidence 59999985
No 3
>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C
Probab=13.11 E-value=64 Score=21.24 Aligned_cols=8 Identities=50% Similarity=0.920 Sum_probs=6.8
Q ss_pred hhhhhhce
Q 032975 90 QRKKRVAS 97 (130)
Q Consensus 90 kRkkRVA~ 97 (130)
.|++|||.
T Consensus 36 SR~~RIA~ 43 (69)
T 1dul_A 36 SRKRRIAA 43 (69)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 69999984
No 4
>1mfq_C SRP54, signal recognition particle 54KDA protein; RNA-protein complex, A-minor motif, 3-helix junction, signaling protein/RNA complex; HET: CCC; 3.10A {Homo sapiens} SCOP: a.36.1.1
Probab=10.40 E-value=76 Score=23.25 Aligned_cols=11 Identities=36% Similarity=0.459 Sum_probs=9.2
Q ss_pred hhhh-----hhhhhce
Q 032975 87 PELQ-----RKKRVAS 97 (130)
Q Consensus 87 pE~k-----RkkRVA~ 97 (130)
|++= |++|||.
T Consensus 81 P~ii~~~~SRk~RIA~ 96 (129)
T 1mfq_C 81 AKVFSKQPGRIQRVAR 96 (129)
T ss_dssp HHHHHHCTHHHHHHHH
T ss_pred cccccCChHHHHHHHc
Confidence 8775 9999985
No 5
>1hq1_A Signal recognition particle protein; protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.52A {Escherichia coli} SCOP: a.36.1.1 PDB: 3lqx_A* 2pxb_A 2pxd_A 2pxe_A 2pxf_A 2pxk_A 2pxl_A 2pxp_A 2pxq_A 2pxt_A 2pxu_A 2pxv_A
Probab=10.24 E-value=80 Score=22.19 Aligned_cols=13 Identities=46% Similarity=0.930 Sum_probs=9.2
Q ss_pred CChhh---hhhhhhce
Q 032975 85 NDPEL---QRKKRVAS 97 (130)
Q Consensus 85 ~dpE~---kRkkRVA~ 97 (130)
.+|++ .||+|||.
T Consensus 62 ~~P~ii~~SR~~RIA~ 77 (105)
T 1hq1_A 62 AKPEIIKGSRKRRIAA 77 (105)
T ss_dssp HCGGGCCHHHHHHHHH
T ss_pred hChhhcCHHHHHHHHc
Confidence 44554 69999984
No 6
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=10.14 E-value=68 Score=18.18 Aligned_cols=9 Identities=33% Similarity=0.752 Sum_probs=6.6
Q ss_pred cchhhhhhh
Q 032975 114 SFRWIKDRC 122 (130)
Q Consensus 114 sfrWiK~k~ 122 (130)
-+.|||+|-
T Consensus 16 liSWiK~kr 24 (26)
T 3qrx_B 16 LISWIKRKR 24 (26)
T ss_pred HHHHHHHHh
Confidence 367999874
No 7
>3c01_A Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=9.70 E-value=1e+02 Score=19.14 Aligned_cols=11 Identities=36% Similarity=0.776 Sum_probs=8.5
Q ss_pred CChhhhhhhhh
Q 032975 85 NDPELQRKKRV 95 (130)
Q Consensus 85 ~dpE~kRkkRV 95 (130)
.|||+|-++|=
T Consensus 15 GdP~iK~~~R~ 25 (48)
T 3c01_A 15 GNPEVKSKRRE 25 (48)
T ss_pred CCHHHHHHHHH
Confidence 79999877653
No 8
>3gk6_A Integron cassette protein VCH_CASS2; novel, oyster PO HOLE, USA, structural genomics, PSI-2; HET: MSE PE4; 1.80A {Vibrio cholerae}
Probab=8.73 E-value=1.2e+02 Score=21.25 Aligned_cols=25 Identities=8% Similarity=0.241 Sum_probs=20.4
Q ss_pred ceeeeeeeecccchhhcccchhhhh
Q 032975 96 ASYKVYTVEGKVKGSFKKSFRWIKD 120 (130)
Q Consensus 96 A~Yk~y~vEGKvK~S~r~sfrWiK~ 120 (130)
..|-||..+|.+-..|.+.++||=.
T Consensus 113 g~YAVF~~~G~~p~~i~~~w~~I~~ 137 (170)
T 3gk6_A 113 GKYVTFSATGEMPQVVIDLWNEVWN 137 (170)
T ss_dssp EEEEEEEEESSTTHHHHHHHHHHHH
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHH
Confidence 4699999999998788888877644
No 9
>3bzy_A ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3bzl_A 3bzv_A 3bzx_A 3bzo_A 3bzz_A 3c03_B 3c00_A
Probab=7.33 E-value=1.5e+02 Score=18.89 Aligned_cols=11 Identities=27% Similarity=0.718 Sum_probs=8.5
Q ss_pred CChhhhhhhhh
Q 032975 85 NDPELQRKKRV 95 (130)
Q Consensus 85 ~dpE~kRkkRV 95 (130)
.|||+|-++|=
T Consensus 21 GdP~iK~r~R~ 31 (54)
T 3bzy_A 21 GNPEIKGERRR 31 (54)
T ss_pred CCHHHHHHHHH
Confidence 79999877653
No 10
>2vt1_A Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=6.23 E-value=1.1e+02 Score=19.25 Aligned_cols=13 Identities=15% Similarity=0.192 Sum_probs=0.0
Q ss_pred CChhhhhhhhhce
Q 032975 85 NDPELQRKKRVAS 97 (130)
Q Consensus 85 ~dpE~kRkkRVA~ 97 (130)
.|||+|-++|=..
T Consensus 19 GdP~iK~~~R~~~ 31 (52)
T 2vt1_A 19 GHFETKSRRRELH 31 (52)
T ss_dssp -------------
T ss_pred CCHHHHHHHHHHH
Confidence 7899997766443
Done!