Query 032975
Match_columns 130
No_of_seqs 89 out of 104
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 13:19:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032975.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032975hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xmwa2 b.1.1.4 (A:113-178) CD 19.4 11 0.00078 23.8 -0.0 23 99-121 3-25 (66)
2 d1hd7a_ d.151.1.1 (A:) DNA rep 9.0 37 0.0027 21.8 0.3 28 94-125 20-48 (275)
3 d1zs4a1 a.35.1.9 (A:4-81) Regu 8.5 36 0.0026 22.0 0.0 18 81-98 56-74 (78)
4 d1qb2a_ a.36.1.1 (A:) SRP54M { 6.8 54 0.0039 21.2 0.3 7 91-97 77-83 (107)
5 d1xiwb_ b.1.1.4 (B:) CD3 delta 5.9 51 0.0037 20.9 -0.3 23 99-121 4-26 (74)
6 d1dula_ a.36.1.1 (A:) Signal s 5.7 61 0.0045 19.9 0.1 8 90-97 36-43 (69)
7 d1tdha3 g.39.1.8 (A:247-290) E 5.6 74 0.0054 18.5 0.4 12 42-53 13-24 (44)
8 d1hq1a_ a.36.1.1 (A:) Signal s 4.3 88 0.0064 20.1 0.1 8 90-97 70-77 (104)
9 d2ffha2 a.36.1.1 (A:319-418) S 4.2 90 0.0066 20.0 0.1 8 90-97 65-72 (100)
10 d1io0a_ c.10.1.1 (A:) Tropomod 4.1 1.1E+02 0.0081 19.0 0.5 9 87-95 158-166 (166)
No 1
>d1xmwa2 b.1.1.4 (A:113-178) CD3 epsilon chain ectodomain fragment {Sheep (Ovis aries) [TaxId: 9940]}
Probab=19.40 E-value=11 Score=23.79 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=20.2
Q ss_pred eeeeeecccchhhcccchhhhhh
Q 032975 99 KVYTVEGKVKGSFKKSFRWIKDR 121 (130)
Q Consensus 99 k~y~vEGKvK~S~r~sfrWiK~k 121 (130)
+|+..|+||--+--.++.|||+.
T Consensus 3 ~v~e~edkV~L~Cn~sI~w~k~~ 25 (66)
T d1xmwa2 3 EVLEAEDKVILKCNSSITLLQGT 25 (66)
T ss_dssp EEEEETTEEEEECSSSCEEEEEC
T ss_pred ceEecCceEEEEccCeEEEccCc
Confidence 68899999988888899999985
No 2
>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.03 E-value=37 Score=21.81 Aligned_cols=28 Identities=25% Similarity=0.762 Sum_probs=15.3
Q ss_pred hhceeeeeeeecccchhhcc-cchhhhhhhccc
Q 032975 94 RVASYKVYTVEGKVKGSFKK-SFRWIKDRCSRM 125 (130)
Q Consensus 94 RVA~Yk~y~vEGKvK~S~r~-sfrWiK~k~s~i 125 (130)
||++||| .| ++..+++ -+.||+..=-+|
T Consensus 20 ki~S~Nv---nG-lr~~~~~~~~~~i~~~~pDI 48 (275)
T d1hd7a_ 20 KICSWNV---DG-LRAWIKKKGLDWVKEEAPDI 48 (275)
T ss_dssp EEEEEEC---SS-HHHHHHTTHHHHHHHHCCSE
T ss_pred EEEEEEe---cc-HHhhhhccHHHHHHhCCCCE
Confidence 6888887 33 2223333 357887654443
No 3
>d1zs4a1 a.35.1.9 (A:4-81) Regulatory protein cII {Bacteriophage lambda [TaxId: 10710]}
Probab=8.48 E-value=36 Score=21.98 Aligned_cols=18 Identities=28% Similarity=0.649 Sum_probs=14.6
Q ss_pred ccccCChhhhhh-hhhcee
Q 032975 81 SWSFNDPELQRK-KRVASY 98 (130)
Q Consensus 81 sw~~~dpE~kRk-kRVA~Y 98 (130)
-|+..|.||-|- ||||.|
T Consensus 56 E~GV~D~ema~Lak~vA~~ 74 (78)
T d1zs4a1 56 EWGVVDDDMARLARQVAAI 74 (78)
T ss_dssp TTCCCHHHHHHHHHHHHHH
T ss_pred HhccCcHHHHHHHHHHHHH
Confidence 588899999886 788865
No 4
>d1qb2a_ a.36.1.1 (A:) SRP54M {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.83 E-value=54 Score=21.17 Aligned_cols=7 Identities=57% Similarity=0.686 Sum_probs=6.2
Q ss_pred hhhhhce
Q 032975 91 RKKRVAS 97 (130)
Q Consensus 91 RkkRVA~ 97 (130)
|++|||.
T Consensus 77 R~~RIA~ 83 (107)
T d1qb2a_ 77 RIQRVAR 83 (107)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999984
No 5
>d1xiwb_ b.1.1.4 (B:) CD3 delta chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.85 E-value=51 Score=20.88 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=18.7
Q ss_pred eeeeeecccchhhcccchhhhhh
Q 032975 99 KVYTVEGKVKGSFKKSFRWIKDR 121 (130)
Q Consensus 99 k~y~vEGKvK~S~r~sfrWiK~k 121 (130)
.|...||+|--+--.+|.|+|+.
T Consensus 4 ~v~e~e~~V~L~Cn~si~W~k~~ 26 (74)
T d1xiwb_ 4 PIEELEDRVFVNCNTSITWVEGT 26 (74)
T ss_dssp CEEEETTEEEEECSSCEEEEEEC
T ss_pred eeeecCCeEEEEccCeeEEecCC
Confidence 35677888887778899999986
No 6
>d1dula_ a.36.1.1 (A:) Signal sequence binding protein Ffh {Escherichia coli [TaxId: 562]}
Probab=5.74 E-value=61 Score=19.93 Aligned_cols=8 Identities=50% Similarity=0.920 Sum_probs=6.5
Q ss_pred hhhhhhce
Q 032975 90 QRKKRVAS 97 (130)
Q Consensus 90 kRkkRVA~ 97 (130)
-|++|||.
T Consensus 36 SR~~RIA~ 43 (69)
T d1dula_ 36 SRKRRIAA 43 (69)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHc
Confidence 59999984
No 7
>d1tdha3 g.39.1.8 (A:247-290) Endonuclease VIII-like 1 (NEIL1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.56 E-value=74 Score=18.47 Aligned_cols=12 Identities=33% Similarity=0.567 Sum_probs=7.8
Q ss_pred cccccccccccc
Q 032975 42 DLRCYSASYAAA 53 (130)
Q Consensus 42 DLRsYSaSYA~s 53 (130)
=||||+..--.+
T Consensus 13 WLqCY~~pgM~s 24 (44)
T d1tdha3 13 WLRCYGMPGMSS 24 (44)
T ss_dssp HCSSTTCTTCEE
T ss_pred HHHHHcCCchhh
Confidence 389998654333
No 8
>d1hq1a_ a.36.1.1 (A:) Signal sequence binding protein Ffh {Escherichia coli [TaxId: 562]}
Probab=4.32 E-value=88 Score=20.14 Aligned_cols=8 Identities=50% Similarity=0.920 Sum_probs=6.6
Q ss_pred hhhhhhce
Q 032975 90 QRKKRVAS 97 (130)
Q Consensus 90 kRkkRVA~ 97 (130)
.|++|||.
T Consensus 70 SR~~RIA~ 77 (104)
T d1hq1a_ 70 SRKRRIAA 77 (104)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHc
Confidence 68999984
No 9
>d2ffha2 a.36.1.1 (A:319-418) Signal sequence binding protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=4.21 E-value=90 Score=19.98 Aligned_cols=8 Identities=50% Similarity=0.879 Sum_probs=6.7
Q ss_pred hhhhhhce
Q 032975 90 QRKKRVAS 97 (130)
Q Consensus 90 kRkkRVA~ 97 (130)
.|++|||.
T Consensus 65 sR~~RIA~ 72 (100)
T d2ffha2 65 SRRKRIAK 72 (100)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 69999985
No 10
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=4.13 E-value=1.1e+02 Score=19.00 Aligned_cols=9 Identities=44% Similarity=0.792 Sum_probs=5.4
Q ss_pred hhhhhhhhh
Q 032975 87 PELQRKKRV 95 (130)
Q Consensus 87 pE~kRkkRV 95 (130)
.+++|++||
T Consensus 158 ~~l~r~~r~ 166 (166)
T d1io0a_ 158 NDLVRKRRL 166 (166)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHhcC
Confidence 456666665
Done!