Query 032977
Match_columns 130
No_of_seqs 110 out of 362
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 08:16:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032977.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032977hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00151 translationally contr 100.0 1.7E-55 3.6E-60 336.6 13.5 125 1-130 1-134 (172)
2 PF00838 TCTP: Translationally 100.0 3.2E-56 6.8E-61 339.2 8.7 126 1-130 1-130 (165)
3 KOG1727 Microtubule-binding pr 100.0 1.2E-47 2.7E-52 290.3 6.4 128 1-130 1-130 (169)
4 KOG1727 Microtubule-binding pr 75.7 1.9 4E-05 33.4 1.8 36 90-125 64-101 (169)
5 PRK00239 rpsT 30S ribosomal pr 70.0 15 0.00032 25.3 5.1 34 85-118 22-55 (88)
6 PF09230 DFF40: DNA fragmentat 66.4 9.2 0.0002 31.0 3.9 26 80-105 50-81 (230)
7 TIGR00029 S20 ribosomal protei 64.4 22 0.00048 24.4 5.0 34 85-118 22-55 (87)
8 PF01649 Ribosomal_S20p: Ribos 56.2 42 0.00091 22.8 5.2 34 85-118 21-54 (84)
9 CHL00102 rps20 ribosomal prote 54.6 42 0.00091 23.4 5.1 34 85-118 22-62 (93)
10 COG0268 RpsT Ribosomal protein 47.4 64 0.0014 22.4 5.0 34 85-118 22-55 (88)
11 PHA02937 hypothetical protein; 45.5 19 0.00041 29.9 2.5 22 84-105 56-77 (310)
12 PF07442 Ponericin: Ponericin; 44.1 35 0.00075 18.9 2.6 27 91-117 2-28 (29)
13 cd00717 URO-D Uroporphyrinogen 42.5 29 0.00064 28.3 3.3 41 64-105 187-227 (335)
14 TIGR01464 hemE uroporphyrinoge 41.3 33 0.00072 28.1 3.4 40 64-104 190-229 (338)
15 PLN00078 photosystem I reactio 40.3 25 0.00054 25.5 2.2 25 89-113 59-83 (122)
16 PF01208 URO-D: Uroporphyrinog 39.4 30 0.00064 28.1 2.8 27 79-105 206-232 (343)
17 cd03307 Mta_CmuA_like MtaA_Cmu 34.1 53 0.0011 26.7 3.5 42 63-104 180-222 (326)
18 PRK00115 hemE uroporphyrinogen 33.7 55 0.0012 27.0 3.6 41 64-105 196-236 (346)
19 PLN02433 uroporphyrinogen deca 32.5 56 0.0012 27.0 3.4 41 64-105 189-229 (345)
20 PTZ00198 60S ribosomal protein 30.7 46 0.001 24.5 2.3 19 78-97 73-92 (122)
21 PF09196 DUF1953: Domain of un 28.1 36 0.00077 22.1 1.2 12 3-14 41-52 (66)
22 cd03309 CmuC_like CmuC_like. P 27.4 98 0.0021 25.7 4.0 39 67-105 169-210 (321)
23 cd03308 CmuA_CmuC_like CmuA_Cm 26.8 72 0.0016 26.9 3.2 24 81-104 243-266 (378)
24 PRK06252 methylcobalamin:coenz 25.8 88 0.0019 25.4 3.5 41 64-104 190-231 (339)
25 PF11342 DUF3144: Protein of u 24.5 75 0.0016 21.5 2.3 29 100-128 49-77 (78)
26 PF10737 GerPC: Spore germinat 23.2 2.1E+02 0.0045 22.2 4.9 81 25-117 27-107 (176)
27 PTZ00069 60S ribosomal protein 22.1 1.9E+02 0.0042 24.4 4.8 36 63-100 167-214 (300)
28 cd07277 PX_RUN The phosphoinos 20.7 1.2E+02 0.0027 21.6 3.0 40 87-127 77-117 (118)
29 TIGR01463 mtaA_cmuA methyltran 20.0 1.6E+02 0.0034 24.0 3.9 40 65-104 191-231 (340)
No 1
>PTZ00151 translationally controlled tumor-like protein; Provisional
Probab=100.00 E-value=1.7e-55 Score=336.60 Aligned_cols=125 Identities=38% Similarity=0.635 Sum_probs=117.4
Q ss_pred CeEeeecCCCCeeeccCCCce------eeeCCEEEEEEEEEEEeCCcccccCCCCCCCCCCCCcCcccceeEeceeeecc
Q 032977 1 MLVYQDLLTGDELLSDSFPYK------EIENGILWEVEGKWVVQGAVDVDIGANPSAEGADEDEGVDDQAVKVVDIVDTF 74 (130)
Q Consensus 1 MiIykDiisgdEm~SD~y~~~------~v~~~~~yeV~~k~vt~~~~~~diG~N~SaE~~~e~eg~~~~~~~~iDiV~~~ 74 (130)
||||||||||||||||+||++ ++ +|++|||+||+|+++.++ ||+||||||++ +|++++++++|||||+||
T Consensus 1 MiIykDi~tgDEm~SDsyk~~~~~~~~~~-~~~~yEV~~k~v~~~~~d--ig~n~saee~~-~e~~d~~~~~vvDIV~~f 76 (172)
T PTZ00151 1 MKVYKDVFTGDEVCSDSYKQLDPFGNAEF-SEIAFEVKSKKVIKGNED--YGIADNSEEGD-VEGVDADVETVIDIVDAF 76 (172)
T ss_pred CeEEEecccCCeeeccccccccccccccc-CCEEEEEeeEEEEECCcc--ccCCCCccccc-ccccccccEEEEEeeecC
Confidence 999999999999999999998 56 799999999999998765 69999999743 578999999999999999
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHhHhhhhhcHHHHHHhHHhHH---HHHHccCCCCCC
Q 032977 75 RLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGAT---KFLLSKLSDLQL 130 (130)
Q Consensus 75 ~Lqe~~~f~Kk~y~~yiK~YmK~vk~kL~e~~~e~vk~f~~~a~---k~il~nFkd~qF 130 (130)
||| +|+|||++|++|||+|||+|++||++++|+|++.|+++|+ |+||+|||||||
T Consensus 77 rLq-et~f~Kk~Y~~yiK~YmK~vk~~L~e~~pe~v~~Fk~~a~~~vK~il~~Fkd~qF 134 (172)
T PTZ00151 77 KLQ-STPFTKKEYSTYIKKYMQRIKAYLEEKNPDRVEKFKTNAQPFVKHILENFDDFEF 134 (172)
T ss_pred cce-ecCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHhcCCceE
Confidence 999 4799999999999999999999999999999999999998 889999999998
No 2
>PF00838 TCTP: Translationally controlled tumour protein; InterPro: IPR018105 Mammalian translationally controlled tumour protein (TCTP) (or P23) is a protein which has been found to be preferentially synthesised in cells during the early growth phase of some types of tumour [, ], but which is also expressed in normal cells. The physiological function of TCTP is still not known. It was first identified as a histamine-releasing factor, acting in IgE +-dependent allergic reactions. In addition, TCTP has been shown to bind to tubulin in the cytoskeleton, has a high affinity for calcium, is the binding target for the antimalarial compound artemisinin, and is induced in vitamin D-dependent apoptosis. TCTP production is thought to be controlled at the translational as well as the transcriptional level []. TCTP is a hydrophilic protein of 18 to 20 kD. TCTPs do not share significant sequence similarity with any other class of proteins. Recently, the structure of TCTP was determined and exhibited significant structural similarity to the human protein Mss4, which is a guanine nucleotide-free chaperone of the Rab protein []. Close homologues have been found in plants [], earthworm [], Caenorhabditis elegans (F52H2.11), Hydra, Saccharomyces cerevisiae (YKL056c) [] and Schizosaccharomyces pombe (SpAC1F12.02c).; PDB: 2KWB_A 2LOY_A 1TXJ_A 1H6Q_A 1H7Y_A 3P3K_A 1YZ1_C 3EBM_D 2HR9_A.
Probab=100.00 E-value=3.2e-56 Score=339.25 Aligned_cols=126 Identities=44% Similarity=0.749 Sum_probs=114.3
Q ss_pred CeEeeecCCCCeeeccCCCceeeeCCEEEEEEEEEEEe-CCcccccCCCCCCCCCCCCcCcccceeEeceeeeccccccc
Q 032977 1 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQ-GAVDVDIGANPSAEGADEDEGVDDQAVKVVDIVDTFRLQEQ 79 (130)
Q Consensus 1 MiIykDiisgdEm~SD~y~~~~v~~~~~yeV~~k~vt~-~~~~~diG~N~SaE~~~e~eg~~~~~~~~iDiV~~~~Lqe~ 79 (130)
||||||+|||||||||+||++++ +|+||||+||+|++ +.++.+||||||||+++ +++++++++|||||+||||||
T Consensus 1 MiiykDiisgdEm~SD~y~~~~~-~~~~yeV~gk~vt~~~~d~~liG~N~SaE~~~--e~~~~~~~~viDiV~~~~L~e- 76 (165)
T PF00838_consen 1 MIIYKDIISGDEMFSDSYKIELV-DDVFYEVEGKMVTRTGIDDSLIGANPSAEEGE--EGTDDSVETVIDIVDNHRLQE- 76 (165)
T ss_dssp EEEEEETTTTTEEEETTSCEEEG-CTTEEEEE--EEEEETTB-TTTSSS--SSSSS--SSSCCCECEEEHHHHHTTEEE-
T ss_pred CeEEeccCCCCEecccCcccccc-CCEEEEEEEEEEeeccccccccccCcccccCc--cCCCCccEEccceeeccccee-
Confidence 99999999999999999999666 79999999999999 56778899999999764 689999999999999999995
Q ss_pred CCCCHHHHHHHHHHHHHHHhHhhhhhcHHHHHHhHHhHH---HHHHccCCCCCC
Q 032977 80 PAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGAT---KFLLSKLSDLQL 130 (130)
Q Consensus 80 ~~f~Kk~y~~yiK~YmK~vk~kL~e~~~e~vk~f~~~a~---k~il~nFkd~qF 130 (130)
|+|||++|++|||+|||+|++||++++|+|+++|+++|+ |+||+|||||||
T Consensus 77 t~f~Kk~y~~yiK~Y~K~i~~kL~e~~~erv~~F~~~a~~~vK~il~nfkd~qF 130 (165)
T PF00838_consen 77 TSFDKKSYKAYIKDYMKKIKEKLEENGPERVKAFKKGAQEFVKKILANFKDYQF 130 (165)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHTGGGCEE
T ss_pred ecccHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHhHHHHHHHHhhcccccc
Confidence 799999999999999999999999999999999999998 899999999998
No 3
>KOG1727 consensus Microtubule-binding protein (translationally controlled tumor protein) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=100.00 E-value=1.2e-47 Score=290.33 Aligned_cols=128 Identities=51% Similarity=0.820 Sum_probs=111.6
Q ss_pred CeEeeecCCCCeeeccCCCceeeeCCEEEEEEEEEEEeCCcc-cccCCCCCCCCCCCCcCcccceeEeceeeeccccccc
Q 032977 1 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVD-VDIGANPSAEGADEDEGVDDQAVKVVDIVDTFRLQEQ 79 (130)
Q Consensus 1 MiIykDiisgdEm~SD~y~~~~v~~~~~yeV~~k~vt~~~~~-~diG~N~SaE~~~e~eg~~~~~~~~iDiV~~~~Lqe~ 79 (130)
|+||+|+||||||+||+||+++++ ++||||+||+|||++++ .+||+|||||++.|++|+++++++|+|||+||||||+
T Consensus 1 mliy~di~t~del~sd~~~~k~i~-~l~~EvegK~vsr~~~D~~lig~NpSaE~~~edegte~~~~~~vdiV~~~rLqEq 79 (169)
T KOG1727|consen 1 MLIYKDIITGDELLSDSYPMKEVD-DLCYEVEGKMVTRTNGDDSLIGANPSAEEGAEDEGTEETVETVVDIVLNFRLQEQ 79 (169)
T ss_pred CceeeccccCchhcccchhHHHHH-hhhheeeceeccccCccchhcccCccccccccCCcchhheeeeeeeeeeeccccc
Confidence 899999999999999999999994 69999999999997554 4699999999987889999999999999999999976
Q ss_pred CCCCHHHHHHHHHHHHHHHhHhhhhhcHHHHHHhHHhHHHHHH-ccCCCCCC
Q 032977 80 PAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLL-SKLSDLQL 130 (130)
Q Consensus 80 ~~f~Kk~y~~yiK~YmK~vk~kL~e~~~e~vk~f~~~a~k~il-~nFkd~qF 130 (130)
++| |++|++|||+|||+|++||+|.+.+.++.-+++|.+.++ +|||||||
T Consensus 80 ~~~-ke~~k~yik~ymK~v~~klee~~~~~f~k~~~~a~q~~h~anFKnyqF 130 (169)
T KOG1727|consen 80 SPF-KERFKAYIKGYMKAVKAKLEEEDVDVFKKNIQGAEKIKHIANFKNYQF 130 (169)
T ss_pred chH-HHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchHHHHHHhhcccccee
Confidence 555 999999999999999999999444445555555554433 69999998
No 4
>KOG1727 consensus Microtubule-binding protein (translationally controlled tumor protein) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=75.74 E-value=1.9 Score=33.40 Aligned_cols=36 Identities=31% Similarity=0.289 Sum_probs=26.6
Q ss_pred HHHHHHHHHhHhhhhhcH--HHHHHhHHhHHHHHHccC
Q 032977 90 YMKRFIKLLTPKLSEERQ--EIFKKNIEGATKFLLSKL 125 (130)
Q Consensus 90 yiK~YmK~vk~kL~e~~~--e~vk~f~~~a~k~il~nF 125 (130)
-++.+..-+.-||+|++| +++++|+++..|.|.+++
T Consensus 64 ~~~~vdiV~~~rLqEq~~~ke~~k~yik~ymK~v~~kl 101 (169)
T KOG1727|consen 64 VETVVDIVLNFRLQEQSPFKERFKAYIKGYMKAVKAKL 101 (169)
T ss_pred eeeeeeeeeeecccccchHHHHHHHHHHHHHHHhhhhh
Confidence 344666666778888888 888888888887777654
No 5
>PRK00239 rpsT 30S ribosomal protein S20; Reviewed
Probab=70.01 E-value=15 Score=25.32 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhHhhhhhcHHHHHHhHHhHH
Q 032977 85 KQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGAT 118 (130)
Q Consensus 85 k~y~~yiK~YmK~vk~kL~e~~~e~vk~f~~~a~ 118 (130)
..|++-||.|+|++..-+++.+.+........++
T Consensus 22 ~~~kS~~kT~iKk~~~ai~~~~~~~a~~~~~~a~ 55 (88)
T PRK00239 22 KSRKSRVRTAIKKVEAAIAAGDKEAAEEALKAAQ 55 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4788999999999999998877777666666665
No 6
>PF09230 DFF40: DNA fragmentation factor 40 kDa; InterPro: IPR015311 Apoptosis, or programmed cell death (PCD), is a common and evolutionarily conserved property of all metazoans []. In many biological processes, apoptosis is required to eliminate supernumerary or dangerous (such as pre-cancerous) cells and to promote normal development. Dysregulation of apoptosis can, therefore, contribute to the development of many major diseases including cancer, autoimmunity and neurodegenerative disorders. In most cases, proteins of the caspase family execute the genetic programme that leads to cell death. DNA fragmentation factor (DFF) is a complex of the DNase DFF40 (CAD) and its chaperone/inhibitor DFF45 (ICAD-L). In its inactive form, DFF is a heterodimer composed of a 45kDa chaperone inhibitor subunit (DFF45 or ICAD), and a 40kDa latent endonuclease subunit (DFF40 or CAD). Upon caspase-3 cleavage of DFF45, DFF40 forms active endonuclease homo-oligomers. It is activated during apoptosis to induce DNA fragmentation. DNA binding by DFF is mediated by the nuclease subunit, which can also form stable DNA complexes after release from DFF [, ]. The nuclease subunit is inhibited in DNA cleavage but not in DNA binding []. DFF45 can also be cleaved and inactivated by caspase-7 but not by caspase-6 and caspase-8. The cleaved DFF45 fragments dissociate from DFF40, allowing DFF40 to oligomerise, forming a large complex that cleaves DNA by introducing double strand breaks. Histone H1 confers DNA binding ability to DFF and stimulates the nuclease activity of DFF40 [].; GO: 0016787 hydrolase activity, 0006309 DNA fragmentation involved in apoptotic nuclear change, 0005634 nucleus, 0005737 cytoplasm; PDB: 1V0D_A.
Probab=66.39 E-value=9.2 Score=30.97 Aligned_cols=26 Identities=19% Similarity=0.475 Sum_probs=21.6
Q ss_pred CCC-CHHHHHHH-----HHHHHHHHhHhhhhh
Q 032977 80 PAF-DKKQFVTY-----MKRFIKLLTPKLSEE 105 (130)
Q Consensus 80 ~~f-~Kk~y~~y-----iK~YmK~vk~kL~e~ 105 (130)
+.| ||.+|+.| |++|++++++.|+..
T Consensus 50 ~rfktK~~yM~~~~qsRIRgY~~k~~~~~~~~ 81 (230)
T PF09230_consen 50 SRFKTKSEYMRYRCQSRIRGYFYKVKEYLSKV 81 (230)
T ss_dssp TT--BHHHHHHHHHHHHHHHHHHHHHGGGGGS
T ss_pred hhhccHHHHHhhhHHHhHHHHHHHHHHHHHhc
Confidence 356 89999876 899999999999875
No 7
>TIGR00029 S20 ribosomal protein S20. This family consists of bacterial (and chloroplast) examples of the bacteria ribosomal small subunit protein S20.
Probab=64.39 E-value=22 Score=24.43 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHhHhhhhhcHHHHHHhHHhHH
Q 032977 85 KQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGAT 118 (130)
Q Consensus 85 k~y~~yiK~YmK~vk~kL~e~~~e~vk~f~~~a~ 118 (130)
++|++-+|.++|++..-+++.+.+........++
T Consensus 22 ~~~kS~~kT~iKk~~~ai~~~d~~~a~~~l~~a~ 55 (87)
T TIGR00029 22 ASQKSKMKTIIKKVYAAIAAGDKDKAQEAFKEAA 55 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4788999999999999998877776665555555
No 8
>PF01649 Ribosomal_S20p: Ribosomal protein S20; InterPro: IPR002583 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family consists of bacterial (and chloroplast) examples of the ribosomal small subunit protein S20. Bacterial ribosomal protein S20 forms part of the 30S ribosomal subunit, and interacts with 16S rRNA.; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1I94_T 1FJG_T 4DH9_T 3KNJ_T 3TVG_W 3UYF_W 3V28_T 3KIS_t 3HUY_T 1HNX_T ....
Probab=56.22 E-value=42 Score=22.80 Aligned_cols=34 Identities=15% Similarity=0.115 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHhHhhhhhcHHHHHHhHHhHH
Q 032977 85 KQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGAT 118 (130)
Q Consensus 85 k~y~~yiK~YmK~vk~kL~e~~~e~vk~f~~~a~ 118 (130)
..+++-|+.++|++..-+++.+.+...++...+.
T Consensus 21 r~~kS~~rT~iKk~~~ai~~~~~~~a~~~l~~a~ 54 (84)
T PF01649_consen 21 RSRKSRVRTAIKKFREAIEAGDKEEAKELLRKAY 54 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 4688889999999999888877776666665555
No 9
>CHL00102 rps20 ribosomal protein S20
Probab=54.61 E-value=42 Score=23.40 Aligned_cols=34 Identities=15% Similarity=0.298 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHhHhhhh-------hcHHHHHHhHHhHH
Q 032977 85 KQFVTYMKRFIKLLTPKLSE-------ERQEIFKKNIEGAT 118 (130)
Q Consensus 85 k~y~~yiK~YmK~vk~kL~e-------~~~e~vk~f~~~a~ 118 (130)
+++++-+|.+||++..-++. .+.+....+...++
T Consensus 22 ~~~kS~~rT~iKk~~~ai~~~~~~~~~~d~~~a~~~l~~a~ 62 (93)
T CHL00102 22 KAYKSSVKTLIKKYLKNLEDYKTSPNSNNKKKVQETLSSVY 62 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHH
Confidence 47788888888888888876 55666666666665
No 10
>COG0268 RpsT Ribosomal protein S20 [Translation, ribosomal structure and biogenesis]
Probab=47.40 E-value=64 Score=22.40 Aligned_cols=34 Identities=18% Similarity=0.193 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHhHhhhhhcHHHHHHhHHhHH
Q 032977 85 KQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGAT 118 (130)
Q Consensus 85 k~y~~yiK~YmK~vk~kL~e~~~e~vk~f~~~a~ 118 (130)
+++++-++.|+|++..-++..+.|...+....++
T Consensus 22 ~~~kS~~rT~iKk~~~ai~~gd~~~A~~~l~~a~ 55 (88)
T COG0268 22 KSRKSALRTAIKKVEAAIEAGDKEAAKAALKEAQ 55 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4788889999999988888766666666666655
No 11
>PHA02937 hypothetical protein; Provisional
Probab=45.50 E-value=19 Score=29.90 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhHhhhhh
Q 032977 84 KKQFVTYMKRFIKLLTPKLSEE 105 (130)
Q Consensus 84 Kk~y~~yiK~YmK~vk~kL~e~ 105 (130)
=+.-+.+|+.||+.++++|++.
T Consensus 56 v~~vk~li~~Y~~~lrd~~ked 77 (310)
T PHA02937 56 VNYVKNLIRVYMKDLRDYLKED 77 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4456778999999999999986
No 12
>PF07442 Ponericin: Ponericin; InterPro: IPR010002 This family contains a number of ponericin peptides (approximately 30 residues long) from the venom of the predatory ant Pachycondyla goeldii (Ponerine ant). These peptides exhibit antibacterial and insecticidal properties, and may adopt an amphipathic alpha-helical structure in polar environments such as cell membranes [].; GO: 0005576 extracellular region
Probab=44.08 E-value=35 Score=18.91 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=21.9
Q ss_pred HHHHHHHHhHhhhhhcHHHHHHhHHhH
Q 032977 91 MKRFIKLLTPKLSEERQEIFKKNIEGA 117 (130)
Q Consensus 91 iK~YmK~vk~kL~e~~~e~vk~f~~~a 117 (130)
.|+++|+-.+-|+...|--+++-+++|
T Consensus 2 ~kdw~k~~~~wlkkkgpgi~kaal~aa 28 (29)
T PF07442_consen 2 WKDWLKKAGEWLKKKGPGILKAALKAA 28 (29)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHhc
Confidence 488999999999988888877776654
No 13
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=42.50 E-value=29 Score=28.29 Aligned_cols=41 Identities=12% Similarity=0.229 Sum_probs=30.9
Q ss_pred eeEeceeeecccccccCCCCHHHHHHHHHHHHHHHhHhhhhh
Q 032977 64 AVKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEE 105 (130)
Q Consensus 64 ~~~~iDiV~~~~Lqe~~~f~Kk~y~~yiK~YmK~vk~kL~e~ 105 (130)
.+.|.|++.-+.-. ..-++.+.|..|++.|+|+|.+.+++.
T Consensus 187 ieaGad~i~i~d~~-~~~lsp~~f~ef~~P~~k~i~~~i~~~ 227 (335)
T cd00717 187 IEAGAQAVQIFDSW-AGALSPEDFEEFVLPYLKRIIEEVKKR 227 (335)
T ss_pred HHhCCCEEEEeCcc-cccCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677877544333 235699999999999999999998764
No 14
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=41.25 E-value=33 Score=28.07 Aligned_cols=40 Identities=13% Similarity=0.232 Sum_probs=30.3
Q ss_pred eeEeceeeecccccccCCCCHHHHHHHHHHHHHHHhHhhhh
Q 032977 64 AVKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSE 104 (130)
Q Consensus 64 ~~~~iDiV~~~~Lqe~~~f~Kk~y~~yiK~YmK~vk~kL~e 104 (130)
.+.|.|++.-+.-. ...++.+.|..|++.|+|+|.+.+++
T Consensus 190 ~eaGad~i~i~d~~-~~~lsp~~f~ef~~p~~k~i~~~i~~ 229 (338)
T TIGR01464 190 VKAGAQAVQIFDSW-AGALSPEDFEEFVLPYLKKIIEEVKA 229 (338)
T ss_pred HHcCCCEEEEECCc-cccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35677776544433 23569999999999999999998875
No 15
>PLN00078 photosystem I reaction center subunit N (PsaN); Provisional
Probab=40.29 E-value=25 Score=25.50 Aligned_cols=25 Identities=8% Similarity=0.223 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhHhhhhhcHHHHHHh
Q 032977 89 TYMKRFIKLLTPKLSEERQEIFKKN 113 (130)
Q Consensus 89 ~yiK~YmK~vk~kL~e~~~e~vk~f 113 (130)
..|+.|+|+-.+.-+++..||...+
T Consensus 59 ~liq~llkkSeeNKakndkERLDdY 83 (122)
T PLN00078 59 ALLQEYLKKSEENKEKNDKERLDDY 83 (122)
T ss_pred HHHHHHHHHhHHhHHHhHHHHHHHH
Confidence 4566666666555555555554444
No 16
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=39.37 E-value=30 Score=28.12 Aligned_cols=27 Identities=11% Similarity=0.316 Sum_probs=22.4
Q ss_pred cCCCCHHHHHHHHHHHHHHHhHhhhhh
Q 032977 79 QPAFDKKQFVTYMKRFIKLLTPKLSEE 105 (130)
Q Consensus 79 ~~~f~Kk~y~~yiK~YmK~vk~kL~e~ 105 (130)
..-++.+.|..|++.|+|+|.+.+.+.
T Consensus 206 ~~~isp~~f~e~~~P~~k~i~~~i~~~ 232 (343)
T PF01208_consen 206 GSLISPEMFEEFILPYLKKIIDAIKEA 232 (343)
T ss_dssp GGGS-HHHHHHHTHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 345599999999999999999999864
No 17
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=34.11 E-value=53 Score=26.73 Aligned_cols=42 Identities=12% Similarity=0.123 Sum_probs=29.9
Q ss_pred ceeEeceeeeccccccc-CCCCHHHHHHHHHHHHHHHhHhhhh
Q 032977 63 QAVKVVDIVDTFRLQEQ-PAFDKKQFVTYMKRFIKLLTPKLSE 104 (130)
Q Consensus 63 ~~~~~iDiV~~~~Lqe~-~~f~Kk~y~~yiK~YmK~vk~kL~e 104 (130)
..+.|+|+|.=+.-..+ .-++.+.|..|+..|+|+|.+.+++
T Consensus 180 ~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~ 222 (326)
T cd03307 180 QLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHG 222 (326)
T ss_pred HHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhc
Confidence 34567787644433212 2338999999999999999998875
No 18
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=33.72 E-value=55 Score=27.00 Aligned_cols=41 Identities=15% Similarity=0.246 Sum_probs=31.0
Q ss_pred eeEeceeeecccccccCCCCHHHHHHHHHHHHHHHhHhhhhh
Q 032977 64 AVKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEE 105 (130)
Q Consensus 64 ~~~~iDiV~~~~Lqe~~~f~Kk~y~~yiK~YmK~vk~kL~e~ 105 (130)
.+.|+|++.-+.-. ..-++.+.|..|++.|+|+|...+++.
T Consensus 196 ~eaGad~i~i~d~~-~~~lsp~~f~ef~~P~~k~i~~~i~~~ 236 (346)
T PRK00115 196 IEAGAQAVQIFDSW-AGALSPADYREFVLPYMKRIVAELKRE 236 (346)
T ss_pred HHcCCCEEEEecCc-cccCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678877544333 235699999999999999999998764
No 19
>PLN02433 uroporphyrinogen decarboxylase
Probab=32.49 E-value=56 Score=27.04 Aligned_cols=41 Identities=10% Similarity=0.200 Sum_probs=30.2
Q ss_pred eeEeceeeecccccccCCCCHHHHHHHHHHHHHHHhHhhhhh
Q 032977 64 AVKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEE 105 (130)
Q Consensus 64 ~~~~iDiV~~~~Lqe~~~f~Kk~y~~yiK~YmK~vk~kL~e~ 105 (130)
.+.|++++.=+.-. ...++.+.|..|...|+|+|.+++++.
T Consensus 189 ieaGa~~i~i~d~~-~~~lsp~~f~ef~~P~~k~i~~~i~~~ 229 (345)
T PLN02433 189 IDAGAQVVQIFDSW-AGHLSPVDFEEFSKPYLEKIVDEVKAR 229 (345)
T ss_pred HHcCCCEEEEecCc-cccCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667766433333 235699999999999999999999763
No 20
>PTZ00198 60S ribosomal protein L22; Provisional
Probab=30.68 E-value=46 Score=24.49 Aligned_cols=19 Identities=26% Similarity=0.742 Sum_probs=13.7
Q ss_pred ccCCCCHHHHHHHH-HHHHHH
Q 032977 78 EQPAFDKKQFVTYM-KRFIKL 97 (130)
Q Consensus 78 e~~~f~Kk~y~~yi-K~YmK~ 97 (130)
.+.+|+| -|.+|| |.|+|+
T Consensus 73 s~~~FSK-RYLKYLTKKyLKK 92 (122)
T PTZ00198 73 TTIPFSK-RYLKYLTKKYLKK 92 (122)
T ss_pred ecccccH-HHHHHHHHHHHhh
Confidence 3578988 777776 777774
No 21
>PF09196 DUF1953: Domain of unknown function (DUF1953); InterPro: IPR015279 This domain is found in the Archaeal protein maltooligosyl trehalose synthase produced by Sulfolobus spp. Its function has not, as yet, been defined. ; PDB: 3HJE_A 1IV8_A.
Probab=28.11 E-value=36 Score=22.15 Aligned_cols=12 Identities=42% Similarity=1.007 Sum_probs=10.2
Q ss_pred EeeecCCCCeee
Q 032977 3 VYQDLLTGDELL 14 (130)
Q Consensus 3 IykDiisgdEm~ 14 (130)
+|.|++||.|+-
T Consensus 41 ~ytdv~t~e~i~ 52 (66)
T PF09196_consen 41 IYTDVITGEEIK 52 (66)
T ss_dssp EEEETTTTEEEE
T ss_pred EEEeeecChhee
Confidence 799999998864
No 22
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=27.35 E-value=98 Score=25.73 Aligned_cols=39 Identities=10% Similarity=0.066 Sum_probs=29.1
Q ss_pred eceeeecccc---cccCCCCHHHHHHHHHHHHHHHhHhhhhh
Q 032977 67 VVDIVDTFRL---QEQPAFDKKQFVTYMKRFIKLLTPKLSEE 105 (130)
Q Consensus 67 ~iDiV~~~~L---qe~~~f~Kk~y~~yiK~YmK~vk~kL~e~ 105 (130)
|+|+|.=|.- |...-++.+.|..|+..|+|+|.+.+++.
T Consensus 169 Gad~I~i~Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~ 210 (321)
T cd03309 169 EPDLLVYHDDLGSQKGSFISPATFREFILPRMQRIFDFLRSN 210 (321)
T ss_pred CCCEEEEeCCCccccCCccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 6777765542 21223599999999999999999999753
No 23
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=26.82 E-value=72 Score=26.87 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHHHHHHHhHhhhh
Q 032977 81 AFDKKQFVTYMKRFIKLLTPKLSE 104 (130)
Q Consensus 81 ~f~Kk~y~~yiK~YmK~vk~kL~e 104 (130)
..+.+.|..|++.|+|+|.+.+++
T Consensus 243 ~lsp~~f~ef~~P~~k~i~~~i~~ 266 (378)
T cd03308 243 FLRPKQFEKFYWPSFKKVVEGLAA 266 (378)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHh
Confidence 448999999999999999999875
No 24
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=25.79 E-value=88 Score=25.44 Aligned_cols=41 Identities=7% Similarity=0.139 Sum_probs=29.4
Q ss_pred eeEeceeeeccccc-ccCCCCHHHHHHHHHHHHHHHhHhhhh
Q 032977 64 AVKVVDIVDTFRLQ-EQPAFDKKQFVTYMKRFIKLLTPKLSE 104 (130)
Q Consensus 64 ~~~~iDiV~~~~Lq-e~~~f~Kk~y~~yiK~YmK~vk~kL~e 104 (130)
.+.|+|+|.=+.-. ....++.+.|..|+..|+|+|.+.+++
T Consensus 190 ~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~ 231 (339)
T PRK06252 190 LEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKG 231 (339)
T ss_pred HHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhcc
Confidence 45677776433322 122459999999999999999998875
No 25
>PF11342 DUF3144: Protein of unknown function (DUF3144); InterPro: IPR021490 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=24.47 E-value=75 Score=21.48 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=22.7
Q ss_pred HhhhhhcHHHHHHhHHhHHHHHHccCCCC
Q 032977 100 PKLSEERQEIFKKNIEGATKFLLSKLSDL 128 (130)
Q Consensus 100 ~kL~e~~~e~vk~f~~~a~k~il~nFkd~ 128 (130)
+-|...+.+-+.-|...+.+.+..|++||
T Consensus 49 ~~~~~~ke~~i~~f~~qy~~mL~~nlddy 77 (78)
T PF11342_consen 49 ADMAAEKEEAIDYFTEQYRKMLEENLDDY 77 (78)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35566677778888888888888899887
No 26
>PF10737 GerPC: Spore germination protein GerPC; InterPro: IPR019673 GerPC is required for the formation of functionally normal spores. The gerP locus encodes a number of proteins which are thought to be involved in the establishment of normal spore coat structure and/or permeability, which allows the access of germinants to their receptor [].
Probab=23.19 E-value=2.1e+02 Score=22.25 Aligned_cols=81 Identities=17% Similarity=0.133 Sum_probs=43.8
Q ss_pred CCEEEEEEEEEEEeCCcccccCCCCCCCCCCCCcCcccceeEeceeeecccccccCCCCHHHHHHHHHHHHHHHhHhhhh
Q 032977 25 NGILWEVEGKWVVQGAVDVDIGANPSAEGADEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSE 104 (130)
Q Consensus 25 ~~~~yeV~~k~vt~~~~~~diG~N~SaE~~~e~eg~~~~~~~~iDiV~~~~Lqe~~~f~Kk~y~~yiK~YmK~vk~kL~e 104 (130)
+-+=|.++-=.|.+=+|.+.||-|||..+ ..++-++.+-....+ .-..........+-...|-.+|++
T Consensus 27 ekiEYkFdqLKVe~LeGTLNIGl~p~~~~-----~i~d~~v~~~~~~~~-------~~~~~~~~~~~~~i~~~v~~yL~~ 94 (176)
T PF10737_consen 27 EKIEYKFDQLKVETLEGTLNIGLNPSDGQ-----SIEDFAVNQESPSIP-------PPEQEQSPQLYQNIQQEVHQYLEE 94 (176)
T ss_pred eheeeehhhheeecccceeeeccCCCCcc-----hHhHhhcCCcCCCCC-------CcccccchHHHHHHHHHHHHHHHH
Confidence 34567777667777788899999995321 122211111111110 011223334445566677777777
Q ss_pred hcHHHHHHhHHhH
Q 032977 105 ERQEIFKKNIEGA 117 (130)
Q Consensus 105 ~~~e~vk~f~~~a 117 (130)
+-|++...+.+..
T Consensus 95 e~p~~l~~~e~~~ 107 (176)
T PF10737_consen 95 EAPQRLEQLEQQY 107 (176)
T ss_pred HHHHHHHHHHHHh
Confidence 7777776665554
No 27
>PTZ00069 60S ribosomal protein L5; Provisional
Probab=22.13 E-value=1.9e+02 Score=24.36 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=23.4
Q ss_pred ceeEeceeeecccccccCCCC------------HHHHHHHHHHHHHHHhH
Q 032977 63 QAVKVVDIVDTFRLQEQPAFD------------KKQFVTYMKRFIKLLTP 100 (130)
Q Consensus 63 ~~~~~iDiV~~~~Lqe~~~f~------------Kk~y~~yiK~YmK~vk~ 100 (130)
.+..|+||-++..-- +.++ .-.+-.||-.||+.|++
T Consensus 167 a~DgGl~IPhs~~rf--pg~d~e~~~~dAe~hR~rI~G~HVa~Ym~~Lke 214 (300)
T PTZ00069 167 AVDGGLHIPHSPNRF--PGYSKEKDSYDAEVHRDRIFGKHVAEYMKQLKE 214 (300)
T ss_pred ccccCcccCCCCCcC--CCCCccccccChHHHHhhhcchhHHHHHHHhhh
Confidence 346678888876432 2443 23566788999988774
No 28
>cd07277 PX_RUN The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized proteins containing an N-terminal RUN domain and a C-terminal PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. The RUN domain is found in GTPases in the Rap and Rab families and may play a role in Ras-like signaling pathways.
Probab=20.72 E-value=1.2e+02 Score=21.58 Aligned_cols=40 Identities=15% Similarity=0.148 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhHhhhhhcHHHHHHhHHhHH-HHHHccCCC
Q 032977 87 FVTYMKRFIKLLTPKLSEERQEIFKKNIEGAT-KFLLSKLSD 127 (130)
Q Consensus 87 y~~yiK~YmK~vk~kL~e~~~e~vk~f~~~a~-k~il~nFkd 127 (130)
=+..|-.|++.|..++.++.|+ +..+.+... -.+++=|+|
T Consensus 77 Rr~~Le~yL~~ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 117 (118)
T cd07277 77 RRKRLQVYLRRVVNTLIQTSPE-LTACPSKETLIKLLPFFGD 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHhCch-hhcCCCHHHHHHHhhhhcC
Confidence 3457888899999999988885 444444443 345565554
No 29
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=20.03 E-value=1.6e+02 Score=24.01 Aligned_cols=40 Identities=10% Similarity=0.143 Sum_probs=27.6
Q ss_pred eEeceeeeccc-ccccCCCCHHHHHHHHHHHHHHHhHhhhh
Q 032977 65 VKVVDIVDTFR-LQEQPAFDKKQFVTYMKRFIKLLTPKLSE 104 (130)
Q Consensus 65 ~~~iDiV~~~~-Lqe~~~f~Kk~y~~yiK~YmK~vk~kL~e 104 (130)
..|.|++.=+- ....+.++.+.|..|++.|+|+|.+.+++
T Consensus 191 ~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~ 231 (340)
T TIGR01463 191 EAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYIKE 231 (340)
T ss_pred HcCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHHHHh
Confidence 45666543222 22122459999999999999999998864
Done!