Query 032977
Match_columns 130
No_of_seqs 110 out of 362
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 13:22:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032977.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032977hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h6q_A TCTP, P23FYP, translati 100.0 6.9E-60 2.4E-64 358.7 11.9 126 1-130 1-130 (168)
2 1yz1_A Translationally control 100.0 1.6E-59 5.6E-64 358.6 4.2 128 1-130 3-136 (174)
3 2kwb_A TCTP, translationally-c 100.0 5E-58 1.7E-62 353.9 6.1 128 1-130 1-138 (189)
4 1txj_A Translationally control 100.0 1.1E-57 3.7E-62 347.5 6.5 124 1-130 1-133 (171)
5 3r8n_T 30S ribosomal protein S 63.2 18 0.00061 23.9 5.3 34 85-118 20-53 (85)
6 2vqe_T 30S ribosomal protein S 61.7 18 0.00062 24.9 5.3 34 85-118 27-60 (106)
7 1v0d_A DNA fragmentation facto 60.8 9.1 0.00031 31.4 4.2 28 80-107 150-183 (329)
8 1g1e_B SIN3A; four-helix bundl 37.5 25 0.00087 23.0 2.8 29 89-118 11-39 (89)
9 1e91_A Paired amphipathic heli 34.1 29 0.00098 22.5 2.6 28 90-118 9-36 (85)
10 2eja_A URO-D, UPD, uroporphyri 33.5 28 0.00097 27.1 3.0 40 65-105 190-229 (338)
11 3evy_A Putative type I restric 32.8 81 0.0028 24.0 5.4 43 86-129 12-70 (239)
12 3bbn_T Ribosomal protein S20; 32.1 44 0.0015 25.5 3.7 34 85-118 105-147 (202)
13 2czy_A Paired amphipathic heli 31.4 38 0.0013 21.5 2.8 28 90-118 6-33 (77)
14 2cr7_A Paired amphipathic heli 29.6 38 0.0013 21.6 2.6 25 92-117 14-38 (80)
15 4fqn_A Malcavernin; helical do 26.8 42 0.0014 22.8 2.5 24 88-114 15-38 (98)
16 2f05_A Paired amphipathic heli 26.8 48 0.0016 22.5 2.8 28 90-118 9-36 (105)
17 2h1e_A Chromo domain protein 1 26.7 17 0.00059 26.7 0.6 13 66-78 13-25 (177)
18 4exq_A UPD, URO-D, uroporphyri 26.2 26 0.0009 28.1 1.6 40 65-105 208-247 (368)
19 1r3s_A URO-D, uroporphyrinogen 26.1 44 0.0015 26.5 2.9 38 65-103 208-245 (367)
20 4ay7_A Methylcobalamin\: coenz 25.3 62 0.0021 25.3 3.6 40 65-104 201-241 (348)
21 1qzv_F Plant photosystem I: su 23.7 87 0.003 22.6 3.8 46 83-128 10-56 (154)
22 3cyv_A URO-D, UPD, uroporphyri 23.3 47 0.0016 26.0 2.5 38 66-104 199-236 (354)
23 4gba_A DCN1-like protein 3; E3 22.5 43 0.0015 25.7 2.1 46 68-113 43-99 (221)
24 2kfe_A Meucin-24; alpha-helix, 21.3 57 0.0019 17.0 1.8 13 92-104 4-16 (26)
25 1j93_A UROD, uroporphyrinogen 20.1 77 0.0026 24.7 3.2 40 65-105 204-243 (353)
No 1
>1h6q_A TCTP, P23FYP, translationally controlled tumor protein; tumor-associated protein, function unknown; NMR {Schizosaccharomyces pombe} SCOP: b.88.1.2 PDB: 1h7y_A
Probab=100.00 E-value=6.9e-60 Score=358.74 Aligned_cols=126 Identities=37% Similarity=0.658 Sum_probs=121.8
Q ss_pred CeEeeecCCCCeeeccCCCceeeeCCEEEEEEEEEEEe-CCcccccCCCCCCCCCCCCcCcccceeEeceeeeccccccc
Q 032977 1 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQ-GAVDVDIGANPSAEGADEDEGVDDQAVKVVDIVDTFRLQEQ 79 (130)
Q Consensus 1 MiIykDiisgdEm~SD~y~~~~v~~~~~yeV~~k~vt~-~~~~~diG~N~SaE~~~e~eg~~~~~~~~iDiV~~~~Lqe~ 79 (130)
|||||||||||||||||||++++ +|++|||+||+|+| ++++++|||||||||+ +||+++++++|||||+||||||
T Consensus 1 MiiykDiitgDEm~SDsy~~k~v-d~~~yEV~gk~v~~~~~~didiGaN~SaE~~--~eg~d~~~~~vvdiV~~~rLqe- 76 (168)
T 1h6q_A 1 MLLYKDVISGDELVSDAYDLKEV-DDIVYEADCQMVTVKQGGDVDIGANPSAEDA--EENAEEGTETVNNLVYSFRLSP- 76 (168)
T ss_dssp CCEEECTTTTSSCEETTTCEEEC-SSSEEEEECCEEEEECCCCSTTSCCCCCCSC--SCSSCCCEEEEEHHHHHTTCEE-
T ss_pred CeEEeecCCCCEEeecCcccEee-CCEEEEEeeEEEEEccCCccccccCcccccc--ccccCCceEEeeeeeEeccccc-
Confidence 99999999999999999999999 79999999999999 9999999999999975 5689999999999999999995
Q ss_pred CCCCHHHHHHHHHHHHHHHhHhhhhhcHHHHHHhHHhHH---HHHHccCCCCCC
Q 032977 80 PAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGAT---KFLLSKLSDLQL 130 (130)
Q Consensus 80 ~~f~Kk~y~~yiK~YmK~vk~kL~e~~~e~vk~f~~~a~---k~il~nFkd~qF 130 (130)
|+|||++|++|||+|||+|++||++++|+|+++|+++|+ |+||+|||||||
T Consensus 77 t~fdKk~y~~yiK~YmK~v~~kLee~~pe~v~~Fk~~a~~~vK~il~~fkd~qF 130 (168)
T 1h6q_A 77 TSFDKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGFVKKILANFKDYDF 130 (168)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHHHTTTTTTCC
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhhCcCccE
Confidence 799999999999999999999999999999999999998 889999999998
No 2
>1yz1_A Translationally controlled tumor protein; unknown function; 2.00A {Homo sapiens} SCOP: b.88.1.2 PDB: 2hr9_A 3ebm_A
Probab=100.00 E-value=1.6e-59 Score=358.56 Aligned_cols=128 Identities=40% Similarity=0.685 Sum_probs=100.5
Q ss_pred CeEeeecCCCCeeeccCCCceeeeCCEEEEEEEEEEEeCCcccc---cCCCCCCCCCCCCcCcccceeEeceeeeccccc
Q 032977 1 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVD---IGANPSAEGADEDEGVDDQAVKVVDIVDTFRLQ 77 (130)
Q Consensus 1 MiIykDiisgdEm~SD~y~~~~v~~~~~yeV~~k~vt~~~~~~d---iG~N~SaE~~~e~eg~~~~~~~~iDiV~~~~Lq 77 (130)
|||||||||||||||||||++++.+|++|||+||+|+|++++++ |||||||||+ ++||+++++++|||||+|||||
T Consensus 3 MiiykDiitgDEm~SDsy~~~~~~dg~~yEV~gk~v~~~~g~idd~liGaN~SaE~~-~~eg~d~~~~~~vdiV~~~rLq 81 (174)
T 1yz1_A 3 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGP-EGEGTESTVITGVDIVMNHHLQ 81 (174)
T ss_dssp CEEEEETTTCCEEEETTSEEEEEGGGTEEEEECCBCCC-----------------------------CCCBHHHHHTTCE
T ss_pred eEEEeecCCCCEEeecCcccEEccCCEEEEEeeEEEEecCCCccccccccCcccccc-cccccCcceEEcceeEeecccc
Confidence 99999999999999999999999889999999999999999887 9999999975 3578999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhHhhhhhcHHHHHHhHHhHH---HHHHccCCCCCC
Q 032977 78 EQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGAT---KFLLSKLSDLQL 130 (130)
Q Consensus 78 e~~~f~Kk~y~~yiK~YmK~vk~kL~e~~~e~vk~f~~~a~---k~il~nFkd~qF 130 (130)
| |+|||++|++|||+|||+|++||++++|+|+++|+++|+ |+||+|||||||
T Consensus 82 e-t~fdKk~y~~yiK~YmK~v~~kLee~~pe~v~~Fk~~a~~~vK~il~~fkd~qF 136 (174)
T 1yz1_A 82 E-TSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILANFKNYQF 136 (174)
T ss_dssp E-ECCCHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHTGGGCEE
T ss_pred c-cCcCHHHHHHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHHHhhCcCccE
Confidence 5 799999999999999999999999999999999999998 889999999998
No 3
>2kwb_A TCTP, translationally-controlled tumor protein homolog; structural genomics, northeast structural genomics consortiu PSI-2; NMR {Caenorhabditis elegans} PDB: 2loy_A
Probab=100.00 E-value=5e-58 Score=353.86 Aligned_cols=128 Identities=34% Similarity=0.581 Sum_probs=122.5
Q ss_pred CeEeeecCCCCeeeccCCCceeeeCCEEEEEEEEEEEeCCcccc-cCCCCCCCCCCCCcCcccceeEeceeeeccccccc
Q 032977 1 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVD-IGANPSAEGADEDEGVDDQAVKVVDIVDTFRLQEQ 79 (130)
Q Consensus 1 MiIykDiisgdEm~SD~y~~~~v~~~~~yeV~~k~vt~~~~~~d-iG~N~SaE~~~e~eg~~~~~~~~iDiV~~~~Lqe~ 79 (130)
|||||||||||||||||||++++ +|++|||+||+|+|++++++ |||||||||++++||+++++++|||||+||||||
T Consensus 1 MiIYkDiitgDEmfSDsy~~k~v-d~~~yEV~gK~v~~~~gdidl~GaN~SaE~~~~~eg~d~~~~~vvDIV~n~rLqe- 78 (189)
T 2kwb_A 1 MLIYKDIFTDDELSSDSFPMKLV-DDLVYEFKGKHVVRKEGEIVLAGSNPSAEEGAEDDGSDEHVERGIDIVLNHKLVE- 78 (189)
T ss_dssp CEEEEESSCTTTCEEECCCCEEE-TTTEEEEECCEECCBTTBCCCCCCSCCCSSCCSSCCCGGGCSSEEHHHHTTTEEE-
T ss_pred CeEEeecCCCCEEeecCccCEee-CCEEEEEeeEEEEECCccccccccCccccccccccccCCccEEcceeEEecceee-
Confidence 99999999999999999999999 79999999999999999998 9999999985567899999999999999999995
Q ss_pred CCC--CHHHHHHHHHHHHHHHhHhhhhhcHHH--HHHhHHhHH---HHHHc--cCCCCCC
Q 032977 80 PAF--DKKQFVTYMKRFIKLLTPKLSEERQEI--FKKNIEGAT---KFLLS--KLSDLQL 130 (130)
Q Consensus 80 ~~f--~Kk~y~~yiK~YmK~vk~kL~e~~~e~--vk~f~~~a~---k~il~--nFkd~qF 130 (130)
|+| ||++|++|||+|||+|++||++++|+| +++|+++|+ |+||+ |||||||
T Consensus 79 t~f~~dKk~y~~yiK~YmK~v~~kLee~~pe~e~v~~Fk~~a~~~vK~iL~k~~Fkd~qF 138 (189)
T 2kwb_A 79 MNCYEDASMFKAYIKKFMKNVIDHMEKNNRDKADVDAFKKKIQGWVVSLLAKDRFKNLAF 138 (189)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCHHHHTTCEE
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHhccccccCccE
Confidence 799 999999999999999999999999988 999999998 88999 9999998
No 4
>1txj_A Translationally controlled tumour-associated protein (TCTP) from plasmodium knowlesi,...; structural genomics consortium, SGC; 2.00A {Plasmodium knowlesi} SCOP: b.88.1.2 PDB: 3p3k_A
Probab=100.00 E-value=1.1e-57 Score=347.54 Aligned_cols=124 Identities=30% Similarity=0.551 Sum_probs=105.2
Q ss_pred CeEeeecCCCCeeeccCC----Cce--eeeCCEEEEEEEEEEEeCCcccccCCCCCCCCCCCCcCcccceeEeceeeecc
Q 032977 1 MLVYQDLLTGDELLSDSF----PYK--EIENGILWEVEGKWVVQGAVDVDIGANPSAEGADEDEGVDDQAVKVVDIVDTF 74 (130)
Q Consensus 1 MiIykDiisgdEm~SD~y----~~~--~v~~~~~yeV~~k~vt~~~~~~diG~N~SaE~~~e~eg~~~~~~~~iDiV~~~ 74 (130)
|||||||||||||||||| |++ ++ +|++|||+||+|+|++++++|||||||||+ +||++ +++|||||+||
T Consensus 1 MiIykDiitgDEm~SDsy~~~~~~k~~e~-~~~~yEV~gk~v~~~~~~idiGaN~saE~~--~e~~d--~~~vvdIV~~~ 75 (171)
T 1txj_A 1 MKVYKDVFTNDEVCSDSYNQEDPFGIADF-REIAFEVKSNKRIKGNDDYGIADNSEEAVD--GMGAD--VEQVIDIVDSF 75 (171)
T ss_dssp CEEEEETTTCCEEEETTSCCBCGGGCGGG-TTTEEEEECCEEESCC----------------CCCCS--SCEEEHHHHHH
T ss_pred CeEEeecCcCCEEEeccccccCCcccccc-CCEEEEEEeEEEEECCCcccccCCcccccc--ccCcc--eeecceEEEec
Confidence 999999999999999999 999 88 689999999999999999999999999975 45776 89999999999
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHhHhhhhhcHHHHHHhHHhHH---HHHHccCCCCCC
Q 032977 75 RLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGAT---KFLLSKLSDLQL 130 (130)
Q Consensus 75 ~Lqe~~~f~Kk~y~~yiK~YmK~vk~kL~e~~~e~vk~f~~~a~---k~il~nFkd~qF 130 (130)
|||| |+|||++|++|||+|||+|++||++++|+|+++|+++|+ |+||+|||||||
T Consensus 76 rL~e-t~f~Kk~y~~yiK~YmK~i~~kLee~~pe~v~~Fk~~a~~~vK~il~~fkd~qF 133 (171)
T 1txj_A 76 QLTS-TSLSKKEYSVYIKNYMQKILKYLEEKKPDRVDVFKTKAQPLIKHILTNFDDFEF 133 (171)
T ss_dssp TCEE-ECCCHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHTGGGCEE
T ss_pred ceee-cCCCHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhhCcCccE
Confidence 9995 799999999999999999999999999999999999998 889999999998
No 5
>3r8n_T 30S ribosomal protein S20; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_T 3fih_T* 3j18_T* 2wwl_T 3oar_T 3oaq_T 3ofb_T 3ofa_T 3ofp_T 3ofx_T 3ofy_T 3ofo_T 3r8o_T 4a2i_T 4gd1_T 4gd2_T 2qal_T* 1p6g_T 1p87_T 2aw7_T ...
Probab=63.16 E-value=18 Score=23.87 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHhHhhhhhcHHHHHHhHHhHH
Q 032977 85 KQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGAT 118 (130)
Q Consensus 85 k~y~~yiK~YmK~vk~kL~e~~~e~vk~f~~~a~ 118 (130)
++|++-++.++|++..-++..+.+........++
T Consensus 20 ~~~kS~~rT~iKk~~~Ai~~gd~~~A~~~l~~a~ 53 (85)
T 3r8n_T 20 ASRRSMMRTFIKKVYAAIEAGDKAAAQKAFNEMQ 53 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4788999999999999888777666655555554
No 6
>2vqe_T 30S ribosomal protein S20; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.7.6.1 PDB: 1gix_W* 1hnw_T* 1hnx_T* 1hnz_T* 1hr0_T 1j5e_T 1jgo_W* 1jgp_W* 1jgq_W* 1ml5_W* 1yl4_W 2b64_T* 2b9m_T* 2b9o_T* 2f4v_T* 2ow8_u* 2qnh_u* 2uxb_T* 1fjg_T* 2uxd_T* ...
Probab=61.74 E-value=18 Score=24.89 Aligned_cols=34 Identities=21% Similarity=0.060 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHhHhhhhhcHHHHHHhHHhHH
Q 032977 85 KQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGAT 118 (130)
Q Consensus 85 k~y~~yiK~YmK~vk~kL~e~~~e~vk~f~~~a~ 118 (130)
++|++-+|.|+|++..-++..+.+........++
T Consensus 27 ka~kS~~rT~iKkv~~Ai~~gdk~~A~~~l~~a~ 60 (106)
T 2vqe_T 27 KAKKSAIKTLSKKAVQLAQEGKAEEALKIMRKAE 60 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4789999999999999998877776666555555
No 7
>1v0d_A DNA fragmentation factor 40 kDa subunit; hydrolase, nuclease, caspase-activated DNAse; HET: DNA; 2.6A {Mus musculus} SCOP: d.4.1.7 PDB: 1f2r_C 1c9f_A 1ibx_A*
Probab=60.76 E-value=9.1 Score=31.36 Aligned_cols=28 Identities=14% Similarity=0.450 Sum_probs=23.5
Q ss_pred CCC-CHHHHHHH-----HHHHHHHHhHhhhhhcH
Q 032977 80 PAF-DKKQFVTY-----MKRFIKLLTPKLSEERQ 107 (130)
Q Consensus 80 ~~f-~Kk~y~~y-----iK~YmK~vk~kL~e~~~ 107 (130)
+.| ||.+|+.| |++|++++++.|+..+|
T Consensus 150 ~~f~tKe~yM~~~~q~RIRgY~~k~~~~~~~~~~ 183 (329)
T 1v0d_A 150 SRFRNKSGYLRYSCESRIRGYLREVSAYTSMVDE 183 (329)
T ss_dssp TTCCBHHHHHHHHHHHHHHHHHHHHHTTGGGSCT
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 577 99999876 99999999999986433
No 8
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=37.52 E-value=25 Score=23.01 Aligned_cols=29 Identities=10% Similarity=0.254 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhHhhhhhcHHHHHHhHHhHH
Q 032977 89 TYMKRFIKLLTPKLSEERQEIFKKNIEGAT 118 (130)
Q Consensus 89 ~yiK~YmK~vk~kL~e~~~e~vk~f~~~a~ 118 (130)
..-..|+++||.+.+. .|+..+.|..-+.
T Consensus 11 ~~A~~YvnkVK~rF~~-~p~~Y~~FL~IL~ 39 (89)
T 1g1e_B 11 NHAINYVNKIKNRFQG-QPDIYKAFLEILH 39 (89)
T ss_dssp HHHHHHHHHHHHHTTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcc-ChHHHHHHHHHHH
Confidence 4567899999999987 6887777755443
No 9
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=34.06 E-value=29 Score=22.52 Aligned_cols=28 Identities=11% Similarity=0.287 Sum_probs=21.6
Q ss_pred HHHHHHHHHhHhhhhhcHHHHHHhHHhHH
Q 032977 90 YMKRFIKLLTPKLSEERQEIFKKNIEGAT 118 (130)
Q Consensus 90 yiK~YmK~vk~kL~e~~~e~vk~f~~~a~ 118 (130)
.-..|+++||.+.+. .|+..+.|..-+.
T Consensus 9 ~A~~yv~kVK~rF~~-~p~~Y~~FL~il~ 36 (85)
T 1e91_A 9 NAISYVNKIKTRFLD-HPEIYRSFLEILH 36 (85)
T ss_dssp HHHHHHHHHHHHTSS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-ChHHHHHHHHHHH
Confidence 456899999999987 6888777765443
No 10
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus}
Probab=33.54 E-value=28 Score=27.11 Aligned_cols=40 Identities=15% Similarity=0.276 Sum_probs=28.9
Q ss_pred eEeceeeecccccccCCCCHHHHHHHHHHHHHHHhHhhhhh
Q 032977 65 VKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEE 105 (130)
Q Consensus 65 ~~~iDiV~~~~Lqe~~~f~Kk~y~~yiK~YmK~vk~kL~e~ 105 (130)
+.|.|+|.-+.-. .+.++.+.|..|++.|+|+|.+.+++.
T Consensus 190 ~aGad~i~i~d~~-~~~lsp~~f~ef~~p~~k~i~~~i~~~ 229 (338)
T 2eja_A 190 KAGADVVQIFDSW-VNNLSLEDYGEYVYPYVNYLISELKDF 229 (338)
T ss_dssp HTTCSEEEEEETT-GGGSCHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HhCCCEEEEecCc-cccCCHHHHHHHhHHHHHHHHHHHhhc
Confidence 3456666544333 224589999999999999999999753
No 11
>3evy_A Putative type I restriction enzyme R protein; structural genomics, unknown function, PSI-2, protein structure initiative; 1.95A {Bacteroides fragilis nctc 9343}
Probab=32.83 E-value=81 Score=24.03 Aligned_cols=43 Identities=5% Similarity=0.073 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhHhhhhh--cHH---------HHHHhHHhHH-----HHHHccCCCCC
Q 032977 86 QFVTYMKRFIKLLTPKLSEE--RQE---------IFKKNIEGAT-----KFLLSKLSDLQ 129 (130)
Q Consensus 86 ~y~~yiK~YmK~vk~kL~e~--~~e---------~vk~f~~~a~-----k~il~nFkd~q 129 (130)
+|..|+++|.+++. +|.+. .|+ .-+.|.+.+. ..+|..|.+|.
T Consensus 12 ~y~e~~~~f~~av~-~L~~~~p~p~~i~~l~~e~~k~~Fvk~F~e~~r~~~~L~~Ydef~ 70 (239)
T 3evy_A 12 PYEKLVERFNEMAA-EFLSYFPTVKSVGNLESELDKRRFVILFRAMLRLRNEVKGYNEFD 70 (239)
T ss_dssp HHHHHHHHHHHHHH-HHHHHCCSHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHTTSTTCC
T ss_pred CHHHHHHHHHHHHH-HHHHhCCChhhcccCCCHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 68889999988776 44432 233 2346666665 45888999885
No 12
>3bbn_T Ribosomal protein S20; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=32.13 E-value=44 Score=25.53 Aligned_cols=34 Identities=18% Similarity=0.056 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHhHhhhh---------hcHHHHHHhHHhHH
Q 032977 85 KQFVTYMKRFIKLLTPKLSE---------ERQEIFKKNIEGAT 118 (130)
Q Consensus 85 k~y~~yiK~YmK~vk~kL~e---------~~~e~vk~f~~~a~ 118 (130)
+.|++-+|.++|++..-++. .+.+........++
T Consensus 105 ka~KS~vRTaIKKv~~AIea~~~~~~~~~gDke~A~~al~~A~ 147 (202)
T 3bbn_T 105 KSKKSEARTRMKKVLEALEGLKKKTDAQADEIVTVEKLIGEAY 147 (202)
T ss_dssp HHHHTHHHHHHHHHHHHHHTTCCCCCCSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCcCCHHHHHHHHHHHH
Confidence 47888999999999988875 33344555445544
No 13
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=31.45 E-value=38 Score=21.48 Aligned_cols=28 Identities=4% Similarity=0.092 Sum_probs=20.8
Q ss_pred HHHHHHHHHhHhhhhhcHHHHHHhHHhHH
Q 032977 90 YMKRFIKLLTPKLSEERQEIFKKNIEGAT 118 (130)
Q Consensus 90 yiK~YmK~vk~kL~e~~~e~vk~f~~~a~ 118 (130)
.-..|+++||.+++. +|+..+.|..-+.
T Consensus 6 dA~~yl~~VK~~F~~-~p~~Y~~FL~im~ 33 (77)
T 2czy_A 6 DALTYLDQVKIRFGS-DPATYNGFLEIMK 33 (77)
T ss_dssp HHHHHHHHHHHHTTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc-ChHHHHHHHHHHH
Confidence 346799999999985 6888777765443
No 14
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=29.56 E-value=38 Score=21.64 Aligned_cols=25 Identities=4% Similarity=0.147 Sum_probs=18.3
Q ss_pred HHHHHHHhHhhhhhcHHHHHHhHHhH
Q 032977 92 KRFIKLLTPKLSEERQEIFKKNIEGA 117 (130)
Q Consensus 92 K~YmK~vk~kL~e~~~e~vk~f~~~a 117 (130)
..|+++||.+++. .|+..+.|..-+
T Consensus 14 ~~yl~~VK~rF~~-~p~~Y~~FL~im 38 (80)
T 2cr7_A 14 LTYLDQVKIRFGS-DPATYNGFLEIM 38 (80)
T ss_dssp HHHHHHHHHHTSS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc-ChHHHHHHHHHH
Confidence 4688889998875 577777776544
No 15
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=26.84 E-value=42 Score=22.81 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhHhhhhhcHHHHHHhH
Q 032977 88 VTYMKRFIKLLTPKLSEERQEIFKKNI 114 (130)
Q Consensus 88 ~~yiK~YmK~vk~kL~e~~~e~vk~f~ 114 (130)
..-+++||..++.+|. |.++..|.
T Consensus 15 ~e~lqdYM~~L~~~L~---~~ElqqFA 38 (98)
T 4fqn_A 15 TELLQDYMLTLRTKLS---SQEIQQFA 38 (98)
T ss_dssp HHHHHHHHHHHTTTSC---HHHHHHHH
T ss_pred HHHHHHHHHHHHhhcC---hHHHHHHH
Confidence 4568999999999994 44444443
No 16
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=26.81 E-value=48 Score=22.47 Aligned_cols=28 Identities=11% Similarity=0.287 Sum_probs=21.3
Q ss_pred HHHHHHHHHhHhhhhhcHHHHHHhHHhHH
Q 032977 90 YMKRFIKLLTPKLSEERQEIFKKNIEGAT 118 (130)
Q Consensus 90 yiK~YmK~vk~kL~e~~~e~vk~f~~~a~ 118 (130)
.-..|+++||.+.+. .|+..+.|..-+.
T Consensus 9 dA~~YvnkVK~rF~d-~p~vY~~FL~IL~ 36 (105)
T 2f05_A 9 NAISYVNKIKTRFLD-HPEIYRSFLEILH 36 (105)
T ss_dssp HHHHHHHHHHHHTTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc-ChHHHHHHHHHHH
Confidence 456899999999987 7887777765443
No 17
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=26.68 E-value=17 Score=26.73 Aligned_cols=13 Identities=38% Similarity=0.493 Sum_probs=11.1
Q ss_pred Eeceeeecccccc
Q 032977 66 KVVDIVDTFRLQE 78 (130)
Q Consensus 66 ~~iDiV~~~~Lqe 78 (130)
-+||.|++|||.+
T Consensus 13 ~~id~v~~hr~~~ 25 (177)
T 2h1e_A 13 HGIDIVINHRLKT 25 (177)
T ss_dssp CCEEEEEEEEECT
T ss_pred CcceeeecCCccc
Confidence 3599999999974
No 18
>4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis}
Probab=26.21 E-value=26 Score=28.13 Aligned_cols=40 Identities=15% Similarity=0.200 Sum_probs=28.6
Q ss_pred eEeceeeecccccccCCCCHHHHHHHHHHHHHHHhHhhhhh
Q 032977 65 VKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEE 105 (130)
Q Consensus 65 ~~~iDiV~~~~Lqe~~~f~Kk~y~~yiK~YmK~vk~kL~e~ 105 (130)
+.|+|+|.=|.-. ...++.+.|..|++.|+|+|.+.+++.
T Consensus 208 ~aGad~i~ifDs~-~~~Lsp~~f~ef~~Py~k~i~~~l~~~ 247 (368)
T 4exq_A 208 EAGAQAVMIFDTW-GGALADGAYQRFSLDYIRRVVAQLKRE 247 (368)
T ss_dssp HHTCSEEEEEETT-GGGSCTTHHHHHTHHHHHHHHHTSCCE
T ss_pred HhCCCEEEEeCCc-cccCCHHHHHHHhHHHHHHHHHHHHHh
Confidence 4455655433323 235689999999999999999999763
No 19
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A*
Probab=26.06 E-value=44 Score=26.46 Aligned_cols=38 Identities=11% Similarity=0.229 Sum_probs=27.9
Q ss_pred eEeceeeecccccccCCCCHHHHHHHHHHHHHHHhHhhh
Q 032977 65 VKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLS 103 (130)
Q Consensus 65 ~~~iDiV~~~~Lqe~~~f~Kk~y~~yiK~YmK~vk~kL~ 103 (130)
..|+|+|.=+.-. ...++.+.|..|++.|+|+|.+.++
T Consensus 208 ~aGad~i~i~D~~-~~~lsp~~f~ef~~p~~k~i~~~i~ 245 (367)
T 1r3s_A 208 VAGAQALQLFESH-AGHLGPQLFNKFALPYIRDVAKQVK 245 (367)
T ss_dssp HTTCSEEEEEETT-GGGSCHHHHHHHTHHHHHHHHHHHH
T ss_pred HhCCCEEEEecCc-cccCCHHHHHHHhHHHHHHHHHHHh
Confidence 3456665433333 2356999999999999999999987
No 20
>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A
Probab=25.25 E-value=62 Score=25.33 Aligned_cols=40 Identities=8% Similarity=0.164 Sum_probs=28.5
Q ss_pred eEeceeeeccccccc-CCCCHHHHHHHHHHHHHHHhHhhhh
Q 032977 65 VKVVDIVDTFRLQEQ-PAFDKKQFVTYMKRFIKLLTPKLSE 104 (130)
Q Consensus 65 ~~~iDiV~~~~Lqe~-~~f~Kk~y~~yiK~YmK~vk~kL~e 104 (130)
+.|.|+|.=+--... .-++.+.|..|++.|+|+|.+.+..
T Consensus 201 ~aGad~i~i~D~~a~~~~lsp~~f~~f~~p~~k~i~~~~~~ 241 (348)
T 4ay7_A 201 EAGADVIAIADPVASPDLMSPDSFRQFLKSRLQKFASSVNS 241 (348)
T ss_dssp HHTCSEEEEECGGGSTTTSCHHHHHHHHHHHHHHHHHHSSS
T ss_pred hcCCCcceeeccccccccCCHHHHHHHhhHHHHHHHhhccC
Confidence 456666654443312 1369999999999999999988754
No 21
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Probab=23.74 E-value=87 Score=22.57 Aligned_cols=46 Identities=13% Similarity=-0.001 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHHHHhHhhhhhcHHHHHHhHHhHH-HHHHccCCCC
Q 032977 83 DKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGAT-KFLLSKLSDL 128 (130)
Q Consensus 83 ~Kk~y~~yiK~YmK~vk~kL~e~~~e~vk~f~~~a~-k~il~nFkd~ 128 (130)
+-+.|.+-+|.=+|+|..+|+...|..-....=.++ ..-..+|+.|
T Consensus 10 eS~AFaKRlk~sVKKLE~RLkKYepgSpPALALqqqIeKTK~RFdkY 56 (154)
T 1qzv_F 10 XXXXXXXXEKQALKKLQASLKLYADDSAPALAIKATMEXXXXXXXXX 56 (154)
T ss_pred cchhhHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhcccccc
Confidence 345888999999999999998754433222222222 4444566655
No 22
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri}
Probab=23.26 E-value=47 Score=26.02 Aligned_cols=38 Identities=8% Similarity=0.123 Sum_probs=27.0
Q ss_pred EeceeeecccccccCCCCHHHHHHHHHHHHHHHhHhhhh
Q 032977 66 KVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSE 104 (130)
Q Consensus 66 ~~iDiV~~~~Lqe~~~f~Kk~y~~yiK~YmK~vk~kL~e 104 (130)
.|.|+|.=+.-. ...++.+.|..|++.|+|+|.+.+++
T Consensus 199 aGad~i~i~d~~-~~~lsp~~f~ef~~p~~k~i~~~i~~ 236 (354)
T 3cyv_A 199 AGAQAVMIFDTW-GGVLTGRDYQQFSLYYMHKIVDGLLR 236 (354)
T ss_dssp TTCSEEEEECTT-GGGSCHHHHHHHTHHHHHHHHHHSCS
T ss_pred hCCCEEEEeCCc-cccCCHHHHHHHhHHHHHHHHHHHHH
Confidence 345554323222 23568999999999999999998874
No 23
>4gba_A DCN1-like protein 3; E3 ligase, ligase-peptide complex; HET: AME; 2.40A {Homo sapiens}
Probab=22.46 E-value=43 Score=25.65 Aligned_cols=46 Identities=17% Similarity=0.348 Sum_probs=29.9
Q ss_pred ceeeecccccccC--CCCHHHHHHHHHHH----HHHHhHhhhh-----hcHHHHHHh
Q 032977 68 VDIVDTFRLQEQP--AFDKKQFVTYMKRF----IKLLTPKLSE-----ERQEIFKKN 113 (130)
Q Consensus 68 iDiV~~~~Lqe~~--~f~Kk~y~~yiK~Y----mK~vk~kL~e-----~~~e~vk~f 113 (130)
+=+|++++|+.++ .|||+.|..-++.+ +.+++.+|.. .+|+.|+.|
T Consensus 43 ~~LvLAw~l~A~~mg~ftr~eF~~G~~~l~~dsi~~lk~~l~~L~~~l~d~~~Fk~~ 99 (221)
T 4gba_A 43 RVLLLAWKFQAATMCKFTRKEFFDGCKAISADSIDGICARFPSLLTEAKQEDKFKDL 99 (221)
T ss_dssp HHHHHHHHTTCCSTTCEEHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHhCCCccCcCcHHHHHHHHHHhCcCCHHHHHHHHHHHHHHccCHHHHHHH
Confidence 4478888886433 47999999987776 3444444432 467776654
No 24
>2kfe_A Meucin-24; alpha-helix, antimicrobial protein; NMR {Synthetic}
Probab=21.31 E-value=57 Score=17.00 Aligned_cols=13 Identities=38% Similarity=0.562 Sum_probs=8.6
Q ss_pred HHHHHHHhHhhhh
Q 032977 92 KRFIKLLTPKLSE 104 (130)
Q Consensus 92 K~YmK~vk~kL~e 104 (130)
|..|.+||++|.+
T Consensus 4 kei~~kiK~kl~~ 16 (26)
T 2kfe_A 4 REFMSNLKEKLSG 16 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 4567777777754
No 25
>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1
Probab=20.10 E-value=77 Score=24.72 Aligned_cols=40 Identities=10% Similarity=0.145 Sum_probs=28.2
Q ss_pred eEeceeeecccccccCCCCHHHHHHHHHHHHHHHhHhhhhh
Q 032977 65 VKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEE 105 (130)
Q Consensus 65 ~~~iDiV~~~~Lqe~~~f~Kk~y~~yiK~YmK~vk~kL~e~ 105 (130)
..|+|+|.-+.-. ...++.+.|..|.+.|+|+|.+.+++.
T Consensus 204 ~aGad~iqi~D~~-~~~lsp~~f~ef~~p~~~~i~~~i~~~ 243 (353)
T 1j93_A 204 DSGAQAVQIFDSW-ATELSPVDFEEFSLPYLKQIVDSVKLT 243 (353)
T ss_dssp HTTCSEEEEECGG-GGGSCHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HhCCCEEEEeCcc-cccCCHHHHHHHhHHHHHHHHHHHHHh
Confidence 3456655433222 124689999999999999999988753
Done!