BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032978
(130 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 13 RVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXX 72
V+ V S+E W + +AN + VV+ FTA WC PS M P+F +LA +P
Sbjct: 16 EVISVHSLEQWTMQIEEANTAK---KLVVIDFTASWCGPSRIMAPVFADLAKKFPNAVFL 72
Query: 73 XXXXXXXXXXASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRI 118
A + V+AMPTFL M+EG V D++VGA EE+ ++
Sbjct: 73 KVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTAKV 118
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 13 RVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXX 72
V+ V S+E W + +AN + VV+ FTA WC P M P+F +LA +P
Sbjct: 13 EVISVHSLEQWTMQIEEANTAK---KLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFL 69
Query: 73 XXXXXXXXXXASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRI 118
A + V+AMPTFL M+EG V D++VGA EE+ ++
Sbjct: 70 KVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTAKV 115
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 3/109 (2%)
Query: 17 VDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXX 76
+ + E W+ +S+A+ G + V+ +F+A WC PS + P + EL+ YP
Sbjct: 29 ITTKERWDQKLSEASRDG---KIVLANFSARWCGPSRQIAPYYIELSENYPSLMFLVIDV 85
Query: 77 XXXXXXASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDSFVQSI 125
++ E+KA PTF +R+G VDKLVGAN E+ K+I + + S+
Sbjct: 86 DELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKITAILDSL 134
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 3/109 (2%)
Query: 17 VDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXX 76
+ + E W+ +S+A+ G + V+ +F+A WC P + P + EL+ YP
Sbjct: 29 ITTKERWDQKLSEASRDG---KIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLVIDV 85
Query: 77 XXXXXXASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDSFVQSI 125
++ E+KA PTF +R+G VDKLVGAN E+ K+I + + S+
Sbjct: 86 DELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKITAILDSL 134
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 1 MEAAAQEQQNKSRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFE 60
+E A++E Q V+ +VE+W + +AN VVV FTA WC P + P F
Sbjct: 9 LEMASEEGQ----VIACHTVETWNEQLQKANESK---TLVVVDFTASWCGPCRFIAPFFA 61
Query: 61 ELASAYPXXXXXXXXXXXXXXXASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRI 118
+LA P AS ++AMPTF+ ++EG ++DK+VGA +E++ I
Sbjct: 62 DLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTI 119
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 5/105 (4%)
Query: 11 KSRVVKVDSVESW-ETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXX 69
+ +V+ +V++W E F +Q + +VV FTA WC P + P+F ELA +P
Sbjct: 3 EGQVIACHTVDTWKEHFEKGKGSQ----KLIVVDFTASWCPPCKMIAPIFAELAKKFPNV 58
Query: 70 XXXXXXXXXXXXXASKLEVKAMPTFLLMREGAVVDKLVGANPEEI 114
A + V+AMPTF+ +++G +VDK VGA+ + +
Sbjct: 59 TFLKVDVDELKAVAEEWNVEAMPTFIFLKDGKLVDKTVGADKDGL 103
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 41/79 (51%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXXXXASKLEVKAMPTFLLMRE 99
VVV F A WC PS + P+ E+ + YP A K EV AMPT LL +
Sbjct: 27 VVVDFYATWCGPSKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKN 86
Query: 100 GAVVDKLVGANPEEIRKRI 118
G V K+VGANP I++ I
Sbjct: 87 GKEVAKVVGANPAAIKQAI 105
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 14 VVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXX 73
V+ + + ++ +++A G + V++ FTA WC P + P+F E A +P
Sbjct: 16 VIACHNKDEFDAQMTKAKEAG---KVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLK 72
Query: 74 XXXXXXXXXASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRI 118
A K V+AMPTFL +++GA DK+VGA ++++ I
Sbjct: 73 VDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTI 117
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 12 SRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXX 71
+ + K+ ++ + + Q + +V+ F A WC P M P +L AYP
Sbjct: 12 TSITKLTNLTEFRNLIKQNDK-------LVIDFYATWCGPCKMMQPHLTKLIQAYPDVRF 64
Query: 72 XXXXXXXXXXXASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRI 118
A + EV AMPTF+L ++G ++ K++GANP + K I
Sbjct: 65 VKCDVDESPDIAKECEVTAMPTFVLGKDGQLIGKIIGANPTALEKGI 111
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 14 VVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXX 73
V+ + + ++T ++ + G + V++ FTA WC P + P+F E A +P
Sbjct: 8 VIACHTKQEFDTHMANGKDTG---KLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLK 64
Query: 74 XXXXXXXXXASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDSFVQS 124
A V+AMPTFL +++G VD +VG ++I +I + + S
Sbjct: 65 VDVDELKDVAEAYNVEAMPTFLFIKDGEKVDSVVGGRKDDIHTKIVALMGS 115
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 40/79 (50%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXXXXASKLEVKAMPTFLLMRE 99
VVV F A WC P + P+ E+ + YP A K EV AMPT LL +
Sbjct: 21 VVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKN 80
Query: 100 GAVVDKLVGANPEEIRKRI 118
G V K+VGANP I++ I
Sbjct: 81 GKEVAKVVGANPAAIKQAI 99
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 40/79 (50%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXXXXASKLEVKAMPTFLLMRE 99
VVV F A WC P + P+ E+ + YP A K EV AMPT LL +
Sbjct: 27 VVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKN 86
Query: 100 GAVVDKLVGANPEEIRKRI 118
G V K+VGANP I++ I
Sbjct: 87 GKEVAKVVGANPAAIKQAI 105
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXXXXASKLEVKAMPTFLLMRE 99
VVV F+A WC PS + P F L+ Y AS+ EVK+MPTF ++
Sbjct: 34 VVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKSMPTFQFFKK 93
Query: 100 GAVVDKLVGANPEEIRKRIDSFV 122
G V + GAN E++ I+ V
Sbjct: 94 GQKVGEFSGANKEKLEATINELV 116
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXXXXASKLEVKAMPTFLLMRE 99
VVV F+A WC PS + P F L+ Y AS+ EVK+MPTF ++
Sbjct: 23 VVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDSQDVASESEVKSMPTFQFFKK 82
Query: 100 GAVVDKLVGANPEEIRKRIDSFV 122
G V + GAN E++ I+ V
Sbjct: 83 GQKVGEFSGANKEKLEATINELV 105
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 40/83 (48%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXXXXASKLEVKAMPTFLLMRE 99
VVV F+A WC PS + P F L+ Y AS+ EVK MPTF ++
Sbjct: 23 VVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKRMPTFQFFKK 82
Query: 100 GAVVDKLVGANPEEIRKRIDSFV 122
G V + GAN E++ I+ V
Sbjct: 83 GQKVGEFSGANKEKLEATINELV 105
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXXXXASKLEVKAMPTFLLMRE 99
VVV F+A WC P + P F L+ Y AS+ EVK+MPTF ++
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKSMPTFQFFKK 82
Query: 100 GAVVDKLVGANPEEIRKRIDSFV 122
G V + GAN E++ I+ V
Sbjct: 83 GQKVGEFSGANKEKLEATINELV 105
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 39/83 (46%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXXXXASKLEVKAMPTFLLMRE 99
VVV F+A WC P + P F L+ Y AS+ EVK MPTF ++
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFKK 82
Query: 100 GAVVDKLVGANPEEIRKRIDSFV 122
G V + GAN E++ I+ V
Sbjct: 83 GQKVGEFSGANKEKLEATINELV 105
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 39/83 (46%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXXXXASKLEVKAMPTFLLMRE 99
VVV F+A WC P + P F L+ Y AS+ EVK MPTF ++
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVNDCQDVASECEVKCMPTFQFFKK 82
Query: 100 GAVVDKLVGANPEEIRKRIDSFV 122
G V + GAN E++ I+ V
Sbjct: 83 GQKVGEFSGANKEKLEATINELV 105
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 39/83 (46%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXXXXASKLEVKAMPTFLLMRE 99
VVV F+A WC P + P F L+ Y AS+ EVK MPTF ++
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASEXEVKCMPTFQFFKK 82
Query: 100 GAVVDKLVGANPEEIRKRIDSFV 122
G V + GAN E++ I+ V
Sbjct: 83 GQKVGEFSGANKEKLEATINELV 105
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 40/83 (48%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXXXXASKLEVKAMPTFLLMRE 99
VVV F+A WC P + P F L+ Y AS+ EVK MPTF ++
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDXQDVASEXEVKCMPTFQFFKK 82
Query: 100 GAVVDKLVGANPEEIRKRIDSFV 122
G V + GAN E++ I+ V
Sbjct: 83 GQKVGEFSGANKEKLEATINELV 105
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXXXXASKLEVKAMPTFLLMRE 99
VVV F+A WC P + P F L+ Y AS+ EVK+MPTF ++
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASESEVKSMPTFQFFKK 82
Query: 100 GAVVDKLVGANPEEIRKRIDSFV 122
G V + GAN E++ I+ V
Sbjct: 83 GQKVGEFSGANKEKLEATINELV 105
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 40/81 (49%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXXXXASKLEVKAMPTFLLMRE 99
VVV F A WC PS + P+ E+ A Y A K EV +MPT + +
Sbjct: 22 VVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKG 81
Query: 100 GAVVDKLVGANPEEIRKRIDS 120
G V ++VGANP I++ I S
Sbjct: 82 GKEVTRVVGANPAAIKQAIAS 102
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXXXXASKLEVKAMPTFLLMRE 99
VVV F A WC P + + P+ EELA+ YP A + + ++PT + +
Sbjct: 26 VVVDFWAEWCAPCLILAPVIEELANDYPQVAFGKLNTEESQDIAMRYGIMSLPTIMFFKN 85
Query: 100 GAVVDKLVGANP-EEIRKRIDSFVQ 123
G +VD+++GA P EEI R+ S ++
Sbjct: 86 GELVDQILGAVPREEIEVRLKSLLE 110
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 40/81 (49%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXXXXASKLEVKAMPTFLLMRE 99
VVV F A WC PS + P+ E+ A Y A K EV +MPT + +
Sbjct: 30 VVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKG 89
Query: 100 GAVVDKLVGANPEEIRKRIDS 120
G V ++VGANP I++ I S
Sbjct: 90 GKEVTRVVGANPAAIKQAIAS 110
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXXXXASKLEVKAMPTFLLMRE 99
VVV F+A WC P+ + P F L+ Y AS+ EVKA PTF ++
Sbjct: 23 VVVDFSATWCGPAKMIKPFFHSLSEKYSNVIFLEVDVDDAQDVASEAEVKATPTFQFFKK 82
Query: 100 GAVVDKLVGANPEEIRKRIDSFV 122
G V + GAN E++ I+ V
Sbjct: 83 GQKVGEFSGANKEKLEATINELV 105
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 39/83 (46%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXXXXASKLEVKAMPTFLLMRE 99
VVV F+A WC P + P F L+ Y AS+ EVKA PTF ++
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDAQDVASEAEVKATPTFQFFKK 82
Query: 100 GAVVDKLVGANPEEIRKRIDSFV 122
G V + GAN E++ I+ V
Sbjct: 83 GQKVGEFSGANKEKLEATINELV 105
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 38 RNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX-XXASKLEVKAMPTFLL 96
+ V+V F A WC P + P+ EELA Y A++ ++++PT LL
Sbjct: 20 KPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYGIRSIPTLLL 79
Query: 97 MREGAVVDKLVGANPEE-IRKRIDSFV 122
+ G VVD+LVGA P+E +++RID +
Sbjct: 80 FKNGQVVDRLVGAQPKEALKERIDKHL 106
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXXXXASKLEVKAMPTFLLMRE 99
VVV F+A WC P + P F L+ Y AS+ EVK PTF ++
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCTPTFQFFKK 82
Query: 100 GAVVDKLVGANPEEIRKRIDSFV 122
G V + GAN E++ I+ V
Sbjct: 83 GQKVGEFSGANKEKLEATINELV 105
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 39/81 (48%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXXXXASKLEVKAMPTFLLMRE 99
VVV F A WC P + P+ E+ A Y A K EV +MPT + +
Sbjct: 22 VVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKG 81
Query: 100 GAVVDKLVGANPEEIRKRIDS 120
G V ++VGANP I++ I S
Sbjct: 82 GKEVTRVVGANPAAIKQAIAS 102
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 39/81 (48%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXXXXASKLEVKAMPTFLLMRE 99
VVV F A WC P + P+ E+ A Y A K EV +MPT + +
Sbjct: 29 VVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKG 88
Query: 100 GAVVDKLVGANPEEIRKRIDS 120
G V ++VGANP I++ I S
Sbjct: 89 GKEVTRVVGANPAAIKQAIAS 109
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 39/83 (46%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXXXXASKLEVKAMPTFLLMRE 99
VVV F+A W PS + P F L+ Y AS+ EVK MPTF ++
Sbjct: 23 VVVDFSATWSGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFKK 82
Query: 100 GAVVDKLVGANPEEIRKRIDSFV 122
G V + GAN E++ I+ V
Sbjct: 83 GQKVGEFSGANKEKLEATINELV 105
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 12 SRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXX 71
V+ +DS +W+ +++ + P+ VV FTA WC P + PLFE L++ Y
Sbjct: 2 GSVIVIDSKAAWDAQLAKGKEEHKPI---VVDFTATWCGPCKMIAPLFETLSNDYAGKVI 58
Query: 72 -XXXXXXXXXXXASKLEVKAMPTFLLMREGAVVDKLVGANPEEIR 115
A + AMPTF + ++G D LVGA+ ++++
Sbjct: 59 FLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLK 103
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 32 NQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXXXXASKLEVKAM 91
N+G R +VV F A WC P + P E LA P A+K V AM
Sbjct: 17 NKG---RLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEEAAAKYSVTAM 73
Query: 92 PTFLLMREGAVVDKLVGANPEEIRKRI 118
PTF+ +++G VD+ GAN ++R+ I
Sbjct: 74 PTFVFIKDGKEVDRFSGANETKLRETI 100
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 41 VVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXXXXASKLEVKAMPTFLLMREG 100
VV F A WC P + + P+ EELA YP A++ V ++PT + ++G
Sbjct: 20 VVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGVMSLPTVIFFKDG 79
Query: 101 AVVDKLVGANP-EEIRKRIDSFV 122
VD+++GA P EEI RI + +
Sbjct: 80 EPVDEIIGAVPREEIEIRIKNLL 102
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 12 SRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXX 71
V+ +DS +W+ +++ + P+ VV FTA WC P + PLFE L++ Y
Sbjct: 2 GSVIVIDSKAAWDAQLAKGKEEHKPI---VVAFTATWCGPCKMIAPLFETLSNDYAGKVI 58
Query: 72 -XXXXXXXXXXXASKLEVKAMPTFLLMREGAVVDKLVGANPEEIR 115
A + AMPTF + ++G D LVGA+ ++++
Sbjct: 59 FLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLK 103
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 20 VESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXX 79
V+ E F Q N G + VV+ F A WC P + P EEL+ +
Sbjct: 5 VKDQEDFTKQLNEAGNKL--VVIDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDVDEC 62
Query: 80 XXXASKLEVKAMPTFLLMREGAVVDKLVGANPEEI 114
A ++ MPTFL M+ G +D L GAN +++
Sbjct: 63 EDIAQDNQIACMPTFLFMKNGQKLDSLSGANYDKL 97
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 12 SRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXX 71
S+++++ E+ + Q N + VVV F A WC P + PLF+EL+ Y
Sbjct: 4 SKLIELKQDGDLESLLEQHKN-----KLVVVDFFATWCGPCKTIAPLFKELSEKYD-AIF 57
Query: 72 XXXXXXXXXXXASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDSFV 122
A K + AMPTF+ ++ G V +VGA+ ++ I F+
Sbjct: 58 VKVDVDKLEETARKYNISAMPTFIAIKNGEKVGDVVGASIAKVEDMIKKFI 108
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXXXXASKLEVKAMPTFLLMRE 99
V+V F A WC P + P +EE + Y K + +MPTF + +
Sbjct: 29 VIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKN 88
Query: 100 GAVVDKLVGANPEEIRKRIDSF 121
G+ VD L+GAN +++ I+ +
Sbjct: 89 GSSVDTLLGANDSALKQLIEKY 110
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 12 SRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXX 71
S ++++ E+ + Q N + VVV F A WC P + PLF+EL+ Y
Sbjct: 13 SELIELKQDGDLESLLEQHKN-----KLVVVDFFATWCGPCKTIAPLFKELSEKYD-AIF 66
Query: 72 XXXXXXXXXXXASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDSFV 122
A K + AMPTF+ ++ G V +VGA+ ++ I F+
Sbjct: 67 VKVDVDKLEETARKYNISAMPTFIAIKNGEKVGDVVGASIAKVEDMIKKFI 117
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 14 VVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXX 73
VV V SVE + +S+ V FTA+WC P + E++A +P
Sbjct: 21 VVDVYSVEQFRNIMSEDIL-------TVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAK 73
Query: 74 XXXXXXXXXASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDSFVQS 124
SK V +PTF++ R G ++ ++GANP +R+++ ++
Sbjct: 74 VDADNNSEIVSKCRVLQLPTFIIARSGKMLGHVIGANPGMLRQKLRDIIKD 124
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELAS--AYPXXXXXXXXXXXXXXXASKLEVKAMPTFLLM 97
VV+ F A WC P + P+FE+++ A A ++ ++AMPTF+
Sbjct: 36 VVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRAMPTFVFF 95
Query: 98 REGAVVDKLVGANPEEIRKRI 118
+ G +D +VGA+P +++ I
Sbjct: 96 KNGQKIDTVVGADPSKLQAAI 116
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 41 VVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX-XXASKLEVKAMPTFLLMRE 99
+V F A WC P + P+ EELA+ Y A+K EV ++PT ++ ++
Sbjct: 24 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 83
Query: 100 GAVVDKLVGANPEE 113
G VDK+VG P+E
Sbjct: 84 GQPVDKVVGFQPKE 97
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXXXXASKLEVKAMPTFLLMRE 99
+VVHF A W MN + ELA P + K E+ ++PTFL +
Sbjct: 35 LVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKN 94
Query: 100 GAVVDKLVGANPEEIRKRID------SFVQSIRVYV 129
+D+L GA+ E+ K++ SF+ S +V V
Sbjct: 95 SQKIDRLDGAHAPELTKKVQRHASSGSFLPSAKVKV 130
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 41 VVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX-XXASKLEVKAMPTFLLMRE 99
+V F A WC S + P+ EELA+ Y A+K EV ++PT ++ ++
Sbjct: 24 LVDFWATWCGTSKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 83
Query: 100 GAVVDKLVGANPEE 113
G VDK+VG P+E
Sbjct: 84 GQPVDKVVGFQPKE 97
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEEL-ASAYPXXXXXXXXXXXXXXXASKLEVKAMPTFLLMR 98
VVV F A WC P + P E++ A + A + EV A+PT L M+
Sbjct: 34 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMK 93
Query: 99 EGAVVDKLVGANPEEIRKRIDSFVQSI 125
G VVDK VG E+ ++++F++ +
Sbjct: 94 NGDVVDKFVGIKDED---QLEAFLKKL 117
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXXXXASKLEVKAMPTFLLMRE 99
+VVHF A W MN + ELA P + K E+ ++PTFL +
Sbjct: 41 LVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKN 100
Query: 100 GAVVDKLVGANPEEIRKRIDSFVQS 124
+D+L GA+ E+ K++ S
Sbjct: 101 SQKIDRLDGAHAPELTKKVQRHASS 125
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 41 VVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX-XXASKLEVKAMPTFLLMRE 99
+V F A WC + P+ EELA+ Y A+K EV ++PT ++ ++
Sbjct: 23 LVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 82
Query: 100 GAVVDKLVGANPEE 113
G VDK+VG P+E
Sbjct: 83 GQPVDKVVGFQPKE 96
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 41 VVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX-XXASKLEVKAMPTFLLMRE 99
+V F A WC + P+ EELA+ Y A+K EV ++PT ++ ++
Sbjct: 24 LVDFWATWCGTCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 83
Query: 100 GAVVDKLVGANPEE 113
G VDK+VG P+E
Sbjct: 84 GQPVDKVVGFQPKE 97
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXXXXASKLEVKAMPTFLLMRE 99
VVV F+A WC P + P F L+ Y A K ++ +PT LL +
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDAQDVAPKYGIRGIPTLLLFKN 82
Query: 100 GAVVDKLVGA-NPEEIRKRIDS 120
G V VGA + ++++ +D+
Sbjct: 83 GEVAATKVGALSKGQLKEFLDA 104
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 41 VVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX-XXASKLEVKAMPTFLLMRE 99
+V F A C P + P+ EELA+ Y A+K EV ++PT ++ ++
Sbjct: 23 LVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 82
Query: 100 GAVVDKLVGANPEE 113
G VDK+VG P+E
Sbjct: 83 GQPVDKVVGFQPKE 96
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX-XXASKLEVKAMPTFLLMR 98
V+V F A WC P + P+ EE+A Y A + V ++PT +L +
Sbjct: 22 VLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPKTAXRYRVXSIPTVILFK 81
Query: 99 EGAVVDKLVGANPE 112
+G V+ LVGA P+
Sbjct: 82 DGQPVEVLVGAQPK 95
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX-XXASKLEVKAMPTFLLMR 98
V+V F A WC P + P+ EE+A Y A + V ++PT +L +
Sbjct: 21 VLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPKTAXRYRVXSIPTVILFK 80
Query: 99 EGAVVDKLVGANPE 112
+G V+ LVGA P+
Sbjct: 81 DGQPVEVLVGAQPK 94
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX-XXASKLEVKAMPTFLLMR 98
V+V F A WC P + P E+ + + +V+++PT +L+R
Sbjct: 23 VLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQVRSIPTLMLVR 82
Query: 99 EGAVVDKLVGANPEEIRKRIDSFVQS 124
+G V+DK VGA P + ++ ++V+S
Sbjct: 83 DGKVIDKKVGALP---KSQLKAWVES 105
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 38 RNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX-XXASKLEVKAMPTFLL 96
+ V+V F A WC P M P+ EE A A+ S+ + ++PT +L
Sbjct: 18 KPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLIL 77
Query: 97 MREGAVVDKLVGANPEE 113
+ G V +L+G P+E
Sbjct: 78 FKGGEPVKQLIGYQPKE 94
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 38 RNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX-XXASKLEVKAMPTFLL 96
+ V+V F A WC P M P+ EE A A+ S+ + ++PT +L
Sbjct: 18 KPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLIL 77
Query: 97 MREGAVVDKLVGANPEE 113
+ G V +L+G P+E
Sbjct: 78 FKGGRPVKQLIGYQPKE 94
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX-XXASKLEVKAMPTFLLMR 98
V+V F A WC P M P+ EE A A+ S+ + ++PT +L +
Sbjct: 20 VLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFK 79
Query: 99 EGAVVDKLVGANPEE 113
G V +L+G P+E
Sbjct: 80 GGEPVKQLIGYQPKE 94
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX-XXASKLEVKAMPTFLLMR 98
V+V F A WC P M P+ EE A A+ S+ + ++PT +L +
Sbjct: 20 VLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFK 79
Query: 99 EGAVVDKLVGANPEE 113
G V +L+G P+E
Sbjct: 80 GGRPVKQLIGYQPKE 94
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 41 VVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXX-XXXXXXXASKLEVKAMPTFLLMRE 99
+V F A WC P ++P+ EELA + A++ V+++PT +L R
Sbjct: 54 LVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLFRR 113
Query: 100 GAVVDKLVGANPEEI-RKRIDSFVQS 124
GA V VGA+P + +R+ +++
Sbjct: 114 GAPVATWVGASPRRVLEERLRPYLEG 139
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 21 ESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX 80
+S++T V +A+ ++V F A WC PS + P+ +E+A Y
Sbjct: 10 DSFDTDVLKADGA------ILVDFWAEWCGPSKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 81 -XXASKLEVKAMPTFLLMREGAVVDKLVGA 109
A K ++ +PT LL + G V VGA
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 13/110 (11%)
Query: 22 SWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX- 80
SW+ FV ++ PV +V F A WC PS + P+ +ELA Y
Sbjct: 9 SWKEFVLESE---VPV---MVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDEAP 62
Query: 81 XXASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDSFVQSIRVYVA 130
A++ ++++PT L + G + ++GA P+ + SI Y++
Sbjct: 63 GIATQYNIRSIPTVLFFKNGERKESIIGAVPKS------TLTDSIEKYLS 106
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXX-XXXASKLEVKAMPTFLLMR 98
V+ F A WC PS + P+ EEL A K V ++PT L+++
Sbjct: 20 VLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLK 79
Query: 99 EGAVVDKLVGANPEE 113
+G VV+ VG P+E
Sbjct: 80 DGEVVETSVGFKPKE 94
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Query: 4 AAQEQQNKSRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELA 63
+ KS +KV S+ T V +N + V+V F A WC PS + P+ EE+A
Sbjct: 1 GSMTDSEKSATIKVTDA-SFATDVLSSN------KPVLVDFWATWCGPSKMVAPVLEEIA 53
Query: 64 SAYPXXXXXXXXXXXXX-XXASKLEVKAMPTFLLMREGAVVDKLVGA 109
+ A +V ++PT +L ++G V ++VGA
Sbjct: 54 TERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGA 100
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 21 ESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX 80
ES++T V +A+ ++V F A WC P + P+ +E+A Y
Sbjct: 10 ESFDTDVLKADGA------ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 81 -XXASKLEVKAMPTFLLMREGAVVDKLVGA 109
A K ++ +PT LL + G V VGA
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 21 ESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX 80
+S+ET V +A+ ++V F A WC P + P+ +E+A Y
Sbjct: 10 DSFETDVLKADGA------ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 81 -XXASKLEVKAMPTFLLMREGAVVDKLVGA 109
A K ++ +PT LL + G V VGA
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 21 ESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX 80
+S++T V +A+ ++V F A WC P + P+ EE+A Y
Sbjct: 10 DSFDTDVLKADGA------ILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQN 63
Query: 81 -XXASKLEVKAMPTFLLMREGAVVDKLVGA 109
A K ++ +PT LL + G V VGA
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXX-XXXASKLEVKAMPTFLLMR 98
V+ F A WC PS + P+ EEL A K V ++PT L+++
Sbjct: 20 VLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLK 79
Query: 99 EGAVVDKLVGANPEEIRKRI 118
+G VV+ VG P+E + +
Sbjct: 80 DGEVVETSVGFKPKEALQEL 99
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXX-XXXASKLEVKAMPTFLLMR 98
VV+ F A WC P ++P EL++ + A + + +MPTF+ ++
Sbjct: 23 VVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLK 82
Query: 99 EGAVVDKLVGANPEEIRKRI 118
G V++ GAN + + I
Sbjct: 83 NGVKVEEFAGANAKRLEDVI 102
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 21 ESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX 80
+S++T V +A+ ++V F A WC P+ + P+ +E+A Y
Sbjct: 30 DSFDTDVLKADGA------ILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQN 83
Query: 81 -XXASKLEVKAMPTFLLMREGAVVDKLVGA 109
A K ++ +PT LL + G V VGA
Sbjct: 84 PGTAPKYGIRGIPTLLLFKNGEVAATKVGA 113
>pdb|1GH2|A Chain A, Crystal Structure Of The Catalytic Domain Of A New Human
Thioredoxin-Like Protein
Length = 107
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 35/85 (41%)
Query: 34 GCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXXXXASKLEVKAMPT 93
G R VV FT C P + + P F +++ YP A+ + A PT
Sbjct: 18 GAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPT 77
Query: 94 FLLMREGAVVDKLVGANPEEIRKRI 118
F R +D+ GA+ + ++I
Sbjct: 78 FQFFRNKVRIDQYQGADAVGLEEKI 102
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 21 ESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX 80
+S++T V +A+ ++V F A WC P + P+ +E+A Y
Sbjct: 20 DSFDTDVLKADGA------ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 73
Query: 81 -XXASKLEVKAMPTFLLMREGAVVDKLVGA 109
A K ++ +PT LL + G V VGA
Sbjct: 74 PGTAPKYGIRGIPTLLLFKNGEVAATKVGA 103
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXX-XXXASKLEVKAMPTFLLMR 98
VV+ F A WC P ++P EL++ + A + + +MPTF+ ++
Sbjct: 28 VVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLK 87
Query: 99 EGAVVDKLVGANPEEIRKRI 118
G V++ GAN + + I
Sbjct: 88 NGVKVEEFAGANAKRLEDVI 107
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 21 ESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX 80
+S++T V +A+ ++V F A WC P + P+ +E+A Y
Sbjct: 10 DSFDTDVLKADGA------ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 81 -XXASKLEVKAMPTFLLMREGAVVDKLVGA 109
A K ++ +PT LL + G V VGA
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGDVAATKVGA 93
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 21 ESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX 80
+S++T V +A+ ++V F A WC P + P+ +E+A Y
Sbjct: 10 DSFDTDVLKADGA------ILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQN 63
Query: 81 -XXASKLEVKAMPTFLLMREGAVVDKLVGA 109
A K ++ +PT LL + G V VGA
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 21 ESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX 80
+S++T V +A+ ++V F A WC P + P+ +E+A Y
Sbjct: 10 DSFDTDVLKADGA------ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 81 -XXASKLEVKAMPTFLLMREGAVVDKLVGA 109
A K ++ +PT LL + G V VGA
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 21 ESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX 80
+S++T V +A+ ++V F A WC P + P+ +E+A Y
Sbjct: 10 DSFDTDVLKADGA------ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 81 -XXASKLEVKAMPTFLLMREGAVVDKLVGA 109
A K ++ +PT LL + G V VGA
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 21 ESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX 80
+S++T V +A+ ++V F A WC P + P+ +E+A Y
Sbjct: 10 DSFDTDVLKADGA------ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 81 -XXASKLEVKAMPTFLLMREGAVVDKLVGA 109
A K ++ +PT LL + G V VGA
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 21 ESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX 80
+S++T V +A+ ++V F A WC P + P+ +E+A Y
Sbjct: 10 DSFDTDVLKADGA------ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 81 -XXASKLEVKAMPTFLLMREGAVVDKLVGA 109
A K ++++PT LL + G V VGA
Sbjct: 64 PGTAPKYGIRSIPTLLLFKNGEVAATKVGA 93
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 21 ESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX 80
+S++T V +A+ ++V F A WC P + P+ +E+A Y
Sbjct: 10 DSFDTDVLKADGA------ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 81 -XXASKLEVKAMPTFLLMREGAVVDKLVGA 109
A K ++ +PT LL + G V VGA
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 21 ESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX 80
+S++T V +A+ ++V F A WC P + P+ +E+A Y
Sbjct: 10 DSFDTDVLKADGA------ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 81 -XXASKLEVKAMPTFLLMREGAVVDKLVGA 109
A K ++ +PT LL + G V VGA
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 21 ESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX 80
+S++T V +A+ ++V F A WC P + P+ +E+A Y
Sbjct: 10 DSFDTDVLKADGA------ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 81 -XXASKLEVKAMPTFLLMREGAVVDKLVGA 109
A K ++ +PT LL + G V VGA
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 21 ESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX 80
+S++T V +A+ ++V F A WC P + P+ +E+A Y
Sbjct: 10 DSFDTDVLKADGA------ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 81 -XXASKLEVKAMPTFLLMREGAVVDKLVGA 109
A K ++ +PT LL + G V VGA
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 21 ESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX 80
+S++T V +A+ ++V F A WC P + P+ +E+A Y
Sbjct: 10 DSFDTDVLKADGA------ILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 81 -XXASKLEVKAMPTFLLMREGAVVDKLVGA 109
A K ++ +PT LL + G V VGA
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 22 SWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX- 80
SW+ FV ++ V+V F A WC P + P+ +ELA Y
Sbjct: 9 SWKEFVLESEVP------VMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAP 62
Query: 81 XXASKLEVKAMPTFLLMREGAVVDKLVGANPE 112
A++ ++++PT L + G + ++GA P+
Sbjct: 63 GIATQYNIRSIPTVLFFKNGERKESIIGAVPK 94
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 21 ESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX 80
+S++T V +A+ ++V F A WC P + P+ +E+A Y
Sbjct: 10 DSFDTDVLKADGA------ILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNIDQN 63
Query: 81 -XXASKLEVKAMPTFLLMREGAVVDKLVGA 109
A K ++ +PT LL + G V VGA
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 22 SWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX- 80
SW+ FV ++ V+V F A WC P + P+ +ELA Y
Sbjct: 8 SWKEFVLESEVP------VMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAP 61
Query: 81 XXASKLEVKAMPTFLLMREGAVVDKLVGANPE 112
A++ ++++PT L + G + ++GA P+
Sbjct: 62 GIATQYNIRSIPTVLFFKNGERKESIIGAVPK 93
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 41 VVHFTAIWCMPSVAMNPLFEELASAYPXXXX-XXXXXXXXXXXASKLEVKAMPTFLLMRE 99
V+ F A WC P + P+F E A+ +++ ++++PT L R
Sbjct: 59 VIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIXLYRN 118
Query: 100 GAVVDKLVGANPE 112
G +D L GA P+
Sbjct: 119 GKXIDXLNGAVPK 131
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX-XXASKLEVKAMPTFLLMR 98
V+V F A WC P + P+ EE+A+ A +V ++PT +L +
Sbjct: 33 VLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFK 92
Query: 99 EGAVVDKLVGA 109
+G V ++VGA
Sbjct: 93 DGQPVKRIVGA 103
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 21 ESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX 80
+S++T V +A+ ++V F A WC P + P+ +E+A Y
Sbjct: 11 DSFDTDVLKADGA------ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 64
Query: 81 -XXASKLEVKAMPTFLLMREGAVVDKLVGA 109
A K ++ PT LL + G V VGA
Sbjct: 65 PGTAPKYGIRGTPTLLLFKNGEVAATKVGA 94
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 11 KSRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXX 70
KS +KV S+ T V +N + V+V F A WC P + P+ EE+A+
Sbjct: 6 KSATIKVTDA-SFATDVLSSN------KPVLVDFWATWCGPCKMVAPVLEEIATERATDL 58
Query: 71 XXXXXXXXXX-XXASKLEVKAMPTFLLMREGAVVDKLVGA 109
A +V ++PT +L ++G V ++VGA
Sbjct: 59 TVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGA 98
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 21 ESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX 80
+S++T V +A+ ++V F A WC P + P+ +E+A Y
Sbjct: 10 DSFDTDVLKADGA------ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 81 -XXASKLEVKAMPTFLLMREGAVVDKLVGA 109
A K ++ +PT LL + G V VGA
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAACKVGA 93
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 21 ESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX 80
+S++T V +A+ ++V F A WC P + P+ +++A Y
Sbjct: 10 DSFDTDVLKADGA------ILVDFWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNIDQN 63
Query: 81 -XXASKLEVKAMPTFLLMREGAVVDKLVGA 109
A K ++ +PT LL + G V VGA
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXX-XXXASKLEVKAMPTFLLMR 98
V+ F A WC P + P+ EEL A K V ++PT L+++
Sbjct: 20 VLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLK 79
Query: 99 EGAVVDKLVGANPEEIRKRI 118
+G VV+ VG P+E + +
Sbjct: 80 DGEVVETSVGFKPKEALQEL 99
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX-XXASKLEVKAMPTFLLMR 98
V+V F A WC P + P+ +E+A Y AS+ ++++PT ++ +
Sbjct: 22 VLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFK 81
Query: 99 EGAVVDKLVGANPEEIRKRIDSFVQSIRVYV 129
G + ++GA P+ + VQ++ Y+
Sbjct: 82 GGKKCETIIGAVPKA------TIVQTVEKYL 106
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXXXXA-SKLEVKAMPTFLLMR 98
+++ FT WC P M P FEE+AS ++L ++ +P+ L
Sbjct: 20 IIIMFTGSWCQPCKKMKPTFEEMASQMEGDIRFAYMDAEDAEKTMAELNIRTLPSLALFV 79
Query: 99 EGAVVDKLVGA-NPEEIRKRIDS 120
+G + + G N ++R I++
Sbjct: 80 DGMIREVFSGTMNKSDLRYWINN 102
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Query: 25 TFVSQANNQGCPVRN---VVVHFTAIWCMPSVAMNPLFEELASAYPXXXX-XXXXXXXXX 80
T V N +RN V+V A WC P P+++++A Y
Sbjct: 6 TLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQ 65
Query: 81 XXASKLEVKAMPTFLLMREGAVVDKLVGANPEE 113
A K V +PT L+ G +VD LVGA E+
Sbjct: 66 KIADKYSVLNIPTTLIFVNGQLVDSLVGAVDED 98
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 38 RNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX-XXASKLEVKAMPTFLL 96
+ V+V F A WC P + P E +A+ Y A+K V ++PT +
Sbjct: 24 KPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLNV 83
Query: 97 MREGAVVDKLVGANPE-EIRKRIDSFV 122
+ G V +VGA P+ I + ++ F+
Sbjct: 84 YQGGEVAKTIVGAKPKAAIVRDLEDFI 110
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 21 ESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX 80
+S++T V +A+ ++V F A WC + + P+ +E+A Y
Sbjct: 10 DSFDTDVLKADGA------ILVDFWAEWCACAKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 81 -XXASKLEVKAMPTFLLMREGAVVDKLVGA 109
A K ++ +PT LL + G V VGA
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 21 ESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX 80
+S++T V +A+ ++V F A WC P + + +E+A Y
Sbjct: 10 DSFDTDVLKADGA------ILVDFWAEWCGPCKLIASILDEIADEYQGKLTVAKLNIDQN 63
Query: 81 -XXASKLEVKAMPTFLLMREGAVVDKLVGA 109
A K ++ +PT LL + G V VGA
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
pdb|3D6I|B Chain B, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
Length = 112
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELAS--AYPXXXXXXXXXXXXXXXASKLEVKAMPTFLLM 97
+V++F W P A+ +FE +++ + + E+ A+P F+++
Sbjct: 24 IVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISAVPYFIII 83
Query: 98 REGAVVDKLVGANPEE 113
+G ++ +L GA+P+E
Sbjct: 84 HKGTILKELSGADPKE 99
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 21 ESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX 80
+S++T V +A+ ++V F A WC + P+ +E+A Y
Sbjct: 10 DSFDTDVLKADGA------ILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 81 -XXASKLEVKAMPTFLLMREGAVVDKLVGA 109
A K ++ +PT LL + G V VGA
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 21 ESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX 80
+S++T V +A+ ++V F A WC+ + P+ +E+A Y
Sbjct: 10 DSFDTDVLKADGA------ILVDFWAEWCVWCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 81 -XXASKLEVKAMPTFLLMREGAVVDKLVGA 109
A K ++ +PT LL + G V VGA
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 21 ESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX 80
+S++T + +A+ ++V F A WC P + P+ +E+A Y
Sbjct: 10 DSFDTDLVKADGA------ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 81 -XXASKLEVKAMPTFLLMREGAVVDKLVGA 109
A K + +PT LL + G V VGA
Sbjct: 64 PGTAPKYIERGIPTLLLFKNGEVAATKVGA 93
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAY----PXXXXXXXXXXXXXXXASKLEVKAMPTFL 95
V++ F A WC P +E++AS P ASK +V PT
Sbjct: 37 VLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTIK 96
Query: 96 LMREGAVVDKLVGANPEEIRKRI 118
++++G VD EEI ++
Sbjct: 97 ILKKGQAVDYDGSRTQEEIVAKV 119
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 21 ESWETFVSQANNQGCPVRNVVVHFTAIWC-MPSVAMNPLFEELASAYPXXXXXXXXXXXX 79
+S++T V +A+ ++V F A WC P + P+ +E+A Y
Sbjct: 10 DSFDTDVLKADGA------ILVDFWAEWCGRPCKMIAPILDEIADEYQGKLTVAKLNIDQ 63
Query: 80 X-XXASKLEVKAMPTFLLMREGAVVDKLVGA 109
A K ++ +PT LL + G V VGA
Sbjct: 64 NPGTAPKYGIRGIPTLLLFKNGEVAATKVGA 94
>pdb|3EMX|A Chain A, Crystal Structure Of Thioredoxin From Aeropyrum Pernix
pdb|3EMX|B Chain B, Crystal Structure Of Thioredoxin From Aeropyrum Pernix
Length = 135
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 84 SKLEVKAMPTFLLMREGAVVDKLVGANPEEIR 115
+K V+ PT + +EG +VDKLVGA P ++
Sbjct: 86 NKAGVEGTPTLVFYKEGRIVDKLVGATPWSLK 117
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 33.5 bits (75), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXXXXASKLEVKAMPT-FLLMR 98
V+V F A WC P + + +A A A V ++P F + +
Sbjct: 26 VLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGNAADAYGVSSIPALFFVKK 85
Query: 99 EG---AVVDKLVGANPEEIRKRIDSF 121
EG +D+ VGA+ I+ I+ F
Sbjct: 86 EGNEIKTLDQFVGADVSRIKADIEKF 111
>pdb|3CXG|A Chain A, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
pdb|3CXG|B Chain B, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
Length = 133
Score = 32.0 bits (71), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 5/86 (5%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXXXXASKLEVKAMPT----FL 95
+V+ F A+WC P + F+ + Y + +KA+PT F
Sbjct: 43 IVIKFGAVWCKPCNKIKEYFKNQLNYY-YVTLVDIDVDIHPKLNDQHNIKALPTFEFYFN 101
Query: 96 LMREGAVVDKLVGANPEEIRKRIDSF 121
L E +V + GAN +I K +
Sbjct: 102 LNNEWVLVHTVEGANQNDIEKAFQKY 127
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 32.0 bits (71), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXX-XXASKLEVKAMPTFLLMR 98
++V F A WC P M P F+ A+ A + ++ +P F+L
Sbjct: 67 LLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFILFH 126
Query: 99 EGAVVDKLVGANP 111
+G + + GA P
Sbjct: 127 KGRELARAAGARP 139
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 38 RNVVVHFTAIWCMPSVAMNPLFEELASAYPXX-XXXXXXXXXXXXXASKLEVKAMPTFLL 96
+ +V F A WC P + P+ +ELA Y A ++++P+ L
Sbjct: 39 KPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRSIPSILF 98
Query: 97 MREGAVVDKLVGANPE-EIRKRIDSFV 122
+ + GA P+ +K ID F+
Sbjct: 99 IPMEGKPEMAQGAMPKASFKKAIDEFL 125
>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn
Length = 287
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXX-XXXXXXASKLEVKAMPTFLLMR 98
V+ +F + + + P+ E LA+ Y A++ ++A+PT L +
Sbjct: 29 VLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTVYLFQ 88
Query: 99 EGAVVDKLVGANPEE-IRKRID 119
G VD G PEE IR +D
Sbjct: 89 NGQPVDGFQGPQPEEAIRALLD 110
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXX-XXXXXXASKLEVKAMPTFLLMR 98
V+ +F + + + P+ E LA+ Y A++ ++A+PT L +
Sbjct: 29 VLFYFWSERSQHCLQLTPVLESLAAQYHGQFILAKLDCDAEQXIAAQFGLRAIPTVYLFQ 88
Query: 99 EGAVVDKLVGANPEE-IRKRIDSFV 122
G VD G PEE IR +D +
Sbjct: 89 NGQPVDGFQGPQPEEAIRALLDKVL 113
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Query: 39 NVVVHFTAIWCMPSVAMNPLFEELASAY----PXXXXXXXXXXXXXXXASKLEVKAMPTF 94
V++ F A WC P +E++A+ P AS+ +V PT
Sbjct: 34 TVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPTI 93
Query: 95 LLMREGAVVDKLVGANPEEIRKRI 118
++++G VD EEI ++
Sbjct: 94 KILKKGQAVDYEGSRTQEEIVAKV 117
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic
Fungal Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic
Fungal Protein Disulfide Isomerase
Length = 121
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 37 VRNVVVHFTAIWCMPSVAMNPLFEELASAY 66
++V++ F A WC A+ P +EEL + Y
Sbjct: 25 TKDVLIEFYAPWCGHCKALAPKYEELGALY 54
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 4/74 (5%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASA-YPXXXXXXXXXXXXXXX---ASKLEVKAMPTFL 95
+ F A WC + P +EEL+ +P SK V+ PT L
Sbjct: 26 TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTLL 85
Query: 96 LMREGAVVDKLVGA 109
L R G V + G
Sbjct: 86 LFRGGKKVSEHSGG 99
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 4/74 (5%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASA-YPXXXXXXXXXXXXXXX---ASKLEVKAMPTFL 95
+ F A WC + P +EEL+ +P SK V+ PT L
Sbjct: 19 TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTLL 78
Query: 96 LMREGAVVDKLVGA 109
L R G V + G
Sbjct: 79 LFRGGKKVSEHSGG 92
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 4/74 (5%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASA-YPXXXXXXXXXXXXXXX---ASKLEVKAMPTFL 95
+ F A WC + P +EEL+ +P SK V+ PT L
Sbjct: 24 TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTLL 83
Query: 96 LMREGAVVDKLVGA 109
L R G V + G
Sbjct: 84 LFRGGKKVSEHSGG 97
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 21/104 (20%)
Query: 21 ESWETFVSQANNQGCPVRNVVVHFTAIWCMP--------------SVAMNPLFEELASAY 66
+S++T V +A+ ++V F A WC P + P+ +E+A Y
Sbjct: 11 DSFDTDVLKADGA------ILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEY 64
Query: 67 PXXXXXXXXXXXXX-XXASKLEVKAMPTFLLMREGAVVDKLVGA 109
A K ++ +PT LL + G V VGA
Sbjct: 65 QGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGA 108
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 38 RNVVVHFTAIWCMPSVAMNPLFEELASAY 66
+ +V F A WC P + P+ EEL+ Y
Sbjct: 52 KPAIVDFYADWCGPCKMVAPILEELSKEY 80
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 38 RNVVVHFTAIWCMPSVAMNPLFEELASAY 66
+ +V F A WC P + P+ EEL+ Y
Sbjct: 52 KPAIVDFYADWCGPCKMVAPILEELSKEY 80
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain
Of Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 36 PVRNVVVHFTAIWCMPSVAMNPLFEELASAY 66
P ++V++ F A WC + P++ L Y
Sbjct: 24 PKKDVLIEFYAPWCGHCKQLEPIYTSLGKKY 54
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 40 VVVHFTAIWCMPSVAMNPLFEELASAY 66
V+V+F A WC P M+PL A+ Y
Sbjct: 28 VLVYFWASWCGPCQLMSPLINLAANTY 54
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 13/99 (13%)
Query: 41 VVHFTAIWCMPSVAMNPLFEE----LASAYPXXXX---XXXXXXXXXXXASKLEVKAMPT 93
+V+F A WC S ++P+FEE + +P A + + PT
Sbjct: 26 LVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPT 85
Query: 94 FLLMREGAVV------DKLVGANPEEIRKRIDSFVQSIR 126
L R G + V A + IR++ +Q IR
Sbjct: 86 LKLFRNGXXXKREYRGQRSVKALADYIRQQKSDPIQEIR 124
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 38 RNVVVHFTAIWCMPSVAMNPLFEELASAY 66
+NV V F A WC + P++++L Y
Sbjct: 26 KNVFVEFYAPWCGHCKQLAPIWDKLGETY 54
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 38 RNVVVHFTAIWCMPSVAMNPLFEELASAY 66
+NV V F A WC + P++++L Y
Sbjct: 268 KNVFVEFYAPWCGHCKQLAPIWDKLGETY 296
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 36 PVRNVVVHFTAIWCMPSVAMNPLFEELASAY 66
P ++V+V + A WC + P ++ELA Y
Sbjct: 375 PKKDVLVLYYAPWCGHCKRLAPTYQELADTY 405
>pdb|3ERW|A Chain A, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|B Chain B, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|C Chain C, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|D Chain D, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|E Chain E, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|F Chain F, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|G Chain G, Crystal Structure Of Stoa From Bacillus Subtilis
Length = 145
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 32 NQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYP 67
N+G + ++HF WC P P F+ A+P
Sbjct: 32 NKG---QKTILHFWTSWCPPCKKELPQFQSFYDAHP 64
>pdb|1VGZ|A Chain A, Crystal Structure Of
4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthase
pdb|1VGZ|B Chain B, Crystal Structure Of
4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthase
Length = 241
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 39 NVVVHFTAIWCMPSVAMNPLFEELASA 65
N++VH A C+PS A+ L E+ +A
Sbjct: 106 NILVHDAARCCLPSEALARLIEQAGNA 132
>pdb|1VGW|A Chain A, Crystal Structure Of
4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthase
pdb|1VGW|B Chain B, Crystal Structure Of
4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthase
pdb|1VGW|C Chain C, Crystal Structure Of
4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthase
pdb|1VGW|D Chain D, Crystal Structure Of
4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthase
pdb|1VGW|E Chain E, Crystal Structure Of
4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthase
pdb|1VGW|F Chain F, Crystal Structure Of
4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthase
Length = 231
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 39 NVVVHFTAIWCMPSVAMNPLFEELASA 65
N++VH A C+PS A+ L E+ +A
Sbjct: 106 NILVHDAARCCLPSEALARLIEQAGNA 132
>pdb|4EX4|A Chain A, The Structure Of Glcb From Mycobacterium Leprae
pdb|4EX4|B Chain B, The Structure Of Glcb From Mycobacterium Leprae
Length = 735
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 85 KLEVKAMPTFLLMREGAVVDKLV--------GANPEEIRKRIDSFVQSIRVYV 129
+++V A+ L + A VD+L+ PEEIR+ +D+ QSI YV
Sbjct: 566 QVDVAAVQQELTGQRRATVDQLLTIPLAKKLAWAPEEIREEVDNDCQSILGYV 618
>pdb|3KMW|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Mgatp)
pdb|3REP|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Mnatp)
Length = 271
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 9 QNKSRVVKVDSVESWETFVSQANNQGCPVRNVVVH 43
Q VVKV V W T S+ N+ CP + H
Sbjct: 32 QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSH 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.128 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,843,414
Number of Sequences: 62578
Number of extensions: 77034
Number of successful extensions: 387
Number of sequences better than 100.0: 131
Number of HSP's better than 100.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 186
Number of HSP's gapped (non-prelim): 131
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)