Query 032978
Match_columns 130
No_of_seqs 130 out of 1075
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 08:17:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032978.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032978hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0910 Thioredoxin-like prote 99.9 2.6E-26 5.6E-31 146.4 11.2 105 13-123 43-149 (150)
2 KOG0907 Thioredoxin [Posttrans 99.9 1.4E-25 3E-30 137.8 12.2 100 19-121 6-105 (106)
3 cd02985 TRX_CDSP32 TRX family, 99.9 5.2E-25 1.1E-29 135.2 13.5 98 19-121 2-102 (103)
4 PF00085 Thioredoxin: Thioredo 99.9 5.3E-24 1.2E-28 129.8 14.1 100 15-121 2-103 (103)
5 cd02954 DIM1 Dim1 family; Dim1 99.9 1.2E-24 2.5E-29 134.7 10.6 85 20-109 2-87 (114)
6 cd02948 TRX_NDPK TRX domain, T 99.9 9.8E-24 2.1E-28 129.3 13.0 98 16-121 3-102 (102)
7 PHA02278 thioredoxin-like prot 99.9 8.1E-24 1.8E-28 129.6 12.5 93 18-117 2-100 (103)
8 PRK09381 trxA thioredoxin; Pro 99.9 3.9E-23 8.5E-28 127.8 13.7 105 11-122 2-108 (109)
9 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 1.2E-23 2.6E-28 129.1 11.2 99 13-118 2-104 (104)
10 PLN00410 U5 snRNP protein, DIM 99.9 2.7E-23 5.8E-28 133.2 12.9 107 14-125 5-123 (142)
11 KOG0908 Thioredoxin-like prote 99.9 8.9E-24 1.9E-28 144.0 11.2 110 13-127 2-111 (288)
12 cd03006 PDI_a_EFP1_N PDIa fami 99.9 2.1E-23 4.5E-28 129.7 11.9 104 10-118 7-113 (113)
13 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 2.1E-23 4.5E-28 127.4 11.3 97 13-117 2-100 (101)
14 cd02956 ybbN ybbN protein fami 99.9 5.4E-23 1.2E-27 124.4 11.9 93 22-119 2-96 (96)
15 COG3118 Thioredoxin domain-con 99.9 2.2E-23 4.7E-28 145.7 11.1 110 10-124 21-132 (304)
16 cd03065 PDI_b_Calsequestrin_N 99.9 7.6E-23 1.7E-27 128.2 12.4 103 12-122 9-119 (120)
17 cd02989 Phd_like_TxnDC9 Phosdu 99.9 9.1E-23 2E-27 127.1 12.4 92 11-109 3-94 (113)
18 cd02999 PDI_a_ERp44_like PDIa 99.9 4.9E-23 1.1E-27 125.8 10.4 91 22-118 8-100 (100)
19 cd02984 TRX_PICOT TRX domain, 99.9 1.9E-22 4.1E-27 122.1 12.1 95 19-118 1-96 (97)
20 PRK10996 thioredoxin 2; Provis 99.9 3.5E-22 7.6E-27 128.7 14.0 104 11-122 34-139 (139)
21 PTZ00051 thioredoxin; Provisio 99.9 2.6E-22 5.6E-27 121.8 12.6 97 13-116 1-97 (98)
22 cd02996 PDI_a_ERp44 PDIa famil 99.9 1.9E-22 4.2E-27 124.6 11.7 99 12-118 1-108 (108)
23 cd02963 TRX_DnaJ TRX domain, D 99.9 1.9E-22 4.2E-27 125.3 11.3 99 19-121 10-111 (111)
24 cd02986 DLP Dim1 family, Dim1- 99.9 2.6E-22 5.6E-27 123.6 11.0 97 20-121 2-110 (114)
25 cd02987 Phd_like_Phd Phosducin 99.9 5.9E-22 1.3E-26 132.0 13.5 96 9-109 59-154 (175)
26 cd02994 PDI_a_TMX PDIa family, 99.9 6.7E-22 1.5E-26 120.7 12.3 98 12-120 1-101 (101)
27 cd02957 Phd_like Phosducin (Ph 99.9 4.5E-22 9.8E-27 124.0 11.4 93 11-109 3-95 (113)
28 cd03002 PDI_a_MPD1_like PDI fa 99.9 1E-21 2.3E-26 121.2 11.4 100 13-119 1-109 (109)
29 cd02965 HyaE HyaE family; HyaE 99.9 1.4E-21 3.1E-26 120.3 11.8 95 13-115 11-109 (111)
30 cd03005 PDI_a_ERp46 PDIa famil 99.9 1.5E-21 3.3E-26 119.0 11.7 96 14-118 2-102 (102)
31 PTZ00443 Thioredoxin domain-co 99.9 4.3E-21 9.3E-26 131.9 14.5 111 11-125 29-142 (224)
32 TIGR01068 thioredoxin thioredo 99.9 4.4E-21 9.5E-26 116.4 12.8 98 19-122 2-101 (101)
33 cd02962 TMX2 TMX2 family; comp 99.9 2.5E-21 5.3E-26 126.0 12.1 93 11-109 27-127 (152)
34 cd02950 TxlA TRX-like protein 99.9 3.8E-21 8.3E-26 124.2 12.8 101 21-128 11-116 (142)
35 cd02997 PDI_a_PDIR PDIa family 99.9 9.7E-21 2.1E-25 115.7 12.2 97 14-118 2-104 (104)
36 cd03001 PDI_a_P5 PDIa family, 99.9 1.3E-20 2.9E-25 115.0 12.0 98 14-118 2-102 (103)
37 TIGR01126 pdi_dom protein disu 99.9 1.4E-20 3E-25 114.5 10.9 96 19-121 2-101 (102)
38 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 2.4E-20 5.3E-25 113.9 10.5 98 13-118 1-104 (104)
39 cd02949 TRX_NTR TRX domain, no 99.8 6.8E-20 1.5E-24 111.2 12.1 91 23-119 5-97 (97)
40 cd02998 PDI_a_ERp38 PDIa famil 99.8 3.9E-20 8.4E-25 113.1 10.3 98 14-118 2-105 (105)
41 cd02975 PfPDO_like_N Pyrococcu 99.8 1.1E-19 2.4E-24 113.2 12.4 88 33-123 21-111 (113)
42 PTZ00062 glutaredoxin; Provisi 99.8 6.1E-20 1.3E-24 124.5 11.5 94 18-125 4-97 (204)
43 cd02953 DsbDgamma DsbD gamma f 99.8 3.8E-20 8.2E-25 113.5 9.3 92 21-119 2-104 (104)
44 TIGR01295 PedC_BrcD bacterioci 99.8 2.1E-19 4.6E-24 113.3 12.7 98 13-119 7-121 (122)
45 cd02988 Phd_like_VIAF Phosduci 99.8 2E-19 4.3E-24 121.3 13.3 105 8-120 78-190 (192)
46 cd02993 PDI_a_APS_reductase PD 99.8 1.4E-19 3E-24 112.0 11.4 101 13-118 2-109 (109)
47 cd02961 PDI_a_family Protein D 99.8 1.8E-19 3.9E-24 108.8 9.9 93 19-118 4-101 (101)
48 cd03000 PDI_a_TMX3 PDIa family 99.8 3.2E-19 7E-24 109.4 10.4 85 33-121 14-103 (104)
49 cd02947 TRX_family TRX family; 99.8 1.5E-18 3.2E-23 103.0 11.7 90 22-118 2-92 (93)
50 cd02992 PDI_a_QSOX PDIa family 99.8 3E-19 6.6E-24 111.4 8.7 89 13-109 2-96 (114)
51 cd02951 SoxW SoxW family; SoxW 99.8 1.5E-18 3.3E-23 109.7 11.8 89 33-124 12-121 (125)
52 KOG0190 Protein disulfide isom 99.8 6.7E-19 1.4E-23 131.4 10.1 110 10-127 23-137 (493)
53 cd02952 TRP14_like Human TRX-r 99.8 2.2E-18 4.7E-23 107.8 10.6 97 17-118 6-118 (119)
54 TIGR01130 ER_PDI_fam protein d 99.8 4E-18 8.7E-23 127.8 13.1 104 13-124 2-111 (462)
55 PTZ00102 disulphide isomerase; 99.8 4.5E-18 9.8E-23 128.4 13.3 105 11-124 31-140 (477)
56 PLN02309 5'-adenylylsulfate re 99.8 7.5E-18 1.6E-22 126.0 12.8 109 8-121 341-456 (457)
57 TIGR00424 APS_reduc 5'-adenyly 99.8 7.7E-18 1.7E-22 126.0 12.4 110 7-121 346-462 (463)
58 PTZ00102 disulphide isomerase; 99.8 1E-17 2.2E-22 126.5 12.1 107 11-124 356-467 (477)
59 TIGR00411 redox_disulf_1 small 99.7 8.3E-17 1.8E-21 94.4 10.5 78 41-122 3-82 (82)
60 PRK00293 dipZ thiol:disulfide 99.7 6.2E-17 1.3E-21 124.7 12.4 107 13-122 453-570 (571)
61 TIGR02187 GlrX_arch Glutaredox 99.7 2.8E-16 6E-21 108.0 12.8 89 33-124 18-113 (215)
62 cd03007 PDI_a_ERp29_N PDIa fam 99.7 1.3E-16 2.8E-21 99.2 9.9 98 13-121 2-115 (116)
63 cd02982 PDI_b'_family Protein 99.7 1E-16 2.2E-21 97.9 8.9 86 33-121 11-102 (103)
64 cd02959 ERp19 Endoplasmic reti 99.7 5.6E-17 1.2E-21 101.6 6.9 97 22-121 7-112 (117)
65 PHA02125 thioredoxin-like prot 99.7 1.8E-15 3.9E-20 87.6 9.6 70 41-118 2-73 (75)
66 TIGR02187 GlrX_arch Glutaredox 99.7 2.9E-15 6.4E-20 102.9 11.9 77 41-120 137-214 (215)
67 KOG0190 Protein disulfide isom 99.7 3E-16 6.6E-21 117.3 7.4 104 11-123 365-474 (493)
68 PRK15412 thiol:disulfide inter 99.7 3.2E-15 6.9E-20 100.5 11.7 88 33-125 67-179 (185)
69 KOG4277 Uncharacterized conser 99.7 2.7E-16 5.8E-21 110.7 6.3 85 40-124 46-134 (468)
70 PF13098 Thioredoxin_2: Thiore 99.6 1.5E-15 3.3E-20 94.0 8.3 83 33-118 4-112 (112)
71 TIGR01130 ER_PDI_fam protein d 99.6 2.5E-15 5.4E-20 112.7 10.9 105 11-124 345-456 (462)
72 TIGR02740 TraF-like TraF-like 99.6 1.5E-14 3.2E-19 102.4 13.4 87 33-123 165-265 (271)
73 TIGR00385 dsbE periplasmic pro 99.6 6.5E-15 1.4E-19 98.0 10.9 86 33-123 62-172 (173)
74 TIGR02738 TrbB type-F conjugat 99.6 7.2E-15 1.6E-19 95.9 10.7 86 33-122 49-153 (153)
75 PRK14018 trifunctional thiored 99.6 6.7E-15 1.5E-19 111.6 11.8 86 33-121 55-172 (521)
76 cd03010 TlpA_like_DsbE TlpA-li 99.6 1E-14 2.2E-19 92.3 9.6 78 32-113 23-125 (127)
77 TIGR00412 redox_disulf_2 small 99.6 1.9E-14 4.2E-19 83.5 9.5 71 41-118 2-75 (76)
78 PRK11509 hydrogenase-1 operon 99.6 6.9E-14 1.5E-18 88.6 12.4 108 13-128 18-130 (132)
79 cd02973 TRX_GRX_like Thioredox 99.6 1.4E-14 3.1E-19 81.9 8.4 61 41-103 3-63 (67)
80 cd02955 SSP411 TRX domain, SSP 99.6 5.3E-14 1.2E-18 88.8 11.5 91 28-121 9-118 (124)
81 cd03008 TryX_like_RdCVF Trypar 99.6 2E-14 4.3E-19 93.0 9.0 71 32-105 23-128 (146)
82 PF13905 Thioredoxin_8: Thiore 99.6 2.2E-14 4.7E-19 86.3 8.6 65 34-101 1-94 (95)
83 cd03026 AhpF_NTD_C TRX-GRX-lik 99.6 6.4E-14 1.4E-18 83.6 10.5 75 33-114 11-86 (89)
84 PRK03147 thiol-disulfide oxido 99.5 1.8E-13 4E-18 90.6 11.6 86 33-121 60-171 (173)
85 KOG0912 Thiol-disulfide isomer 99.5 3E-14 6.5E-19 100.2 7.9 98 20-124 3-108 (375)
86 cd02964 TryX_like_family Trypa 99.5 6.2E-14 1.3E-18 89.4 8.2 71 32-105 15-115 (132)
87 cd02958 UAS UAS family; UAS is 99.5 4.1E-13 8.9E-18 83.6 11.6 100 21-123 4-112 (114)
88 PRK13728 conjugal transfer pro 99.5 2.7E-13 5.8E-18 90.3 11.3 84 41-125 73-174 (181)
89 cd03009 TryX_like_TryX_NRX Try 99.5 1.2E-13 2.7E-18 87.8 9.4 70 33-105 17-115 (131)
90 PLN02919 haloacid dehalogenase 99.5 1.5E-13 3.2E-18 112.2 12.0 88 33-123 419-537 (1057)
91 cd02966 TlpA_like_family TlpA- 99.5 2.9E-13 6.4E-18 82.9 9.2 73 33-108 18-116 (116)
92 KOG0191 Thioredoxin/protein di 99.5 2.2E-13 4.7E-18 100.9 10.0 100 20-125 36-137 (383)
93 cd03011 TlpA_like_ScsD_MtbDsbE 99.5 6.3E-13 1.4E-17 83.4 10.3 81 33-117 19-121 (123)
94 PF02114 Phosducin: Phosducin; 99.5 2.7E-13 5.8E-18 95.5 8.9 107 10-121 123-237 (265)
95 KOG1731 FAD-dependent sulfhydr 99.5 7.3E-14 1.6E-18 105.1 5.4 106 10-122 37-153 (606)
96 cd03012 TlpA_like_DipZ_like Tl 99.5 1.4E-12 3E-17 82.5 10.0 74 33-109 22-125 (126)
97 PTZ00056 glutathione peroxidas 99.5 8.8E-13 1.9E-17 89.6 9.6 91 32-125 37-181 (199)
98 COG4232 Thiol:disulfide interc 99.4 5E-13 1.1E-17 101.3 8.9 103 15-122 457-568 (569)
99 PF08534 Redoxin: Redoxin; In 99.4 2.4E-12 5.2E-17 83.1 10.3 75 33-110 27-135 (146)
100 cd02967 mauD Methylamine utili 99.4 2.4E-12 5.3E-17 79.7 8.8 69 34-105 21-111 (114)
101 TIGR02661 MauD methylamine deh 99.4 5.5E-12 1.2E-16 85.1 10.6 85 33-121 73-178 (189)
102 KOG0191 Thioredoxin/protein di 99.4 3.4E-12 7.3E-17 94.5 9.7 104 14-124 146-254 (383)
103 PLN02399 phospholipid hydroper 99.4 1.6E-11 3.4E-16 85.3 11.3 88 33-123 98-235 (236)
104 TIGR01626 ytfJ_HI0045 conserve 99.4 1.3E-11 2.8E-16 82.6 10.0 82 32-118 57-176 (184)
105 cd02960 AGR Anterior Gradient 99.3 6.3E-12 1.4E-16 79.6 7.6 85 21-109 10-99 (130)
106 PLN02412 probable glutathione 99.3 2.8E-11 6.2E-16 80.1 9.9 89 33-124 28-166 (167)
107 cd02969 PRX_like1 Peroxiredoxi 99.3 6.3E-11 1.4E-15 78.6 11.2 93 33-128 24-158 (171)
108 PF13899 Thioredoxin_7: Thiore 99.3 1.2E-11 2.7E-16 72.6 6.7 73 22-98 5-81 (82)
109 smart00594 UAS UAS domain. 99.3 1.1E-10 2.5E-15 73.5 11.0 96 20-118 13-121 (122)
110 TIGR02540 gpx7 putative glutat 99.3 9.9E-11 2.1E-15 76.4 10.5 88 32-122 20-153 (153)
111 KOG1672 ATP binding protein [P 99.3 3.8E-11 8.3E-16 79.7 8.2 93 10-109 64-156 (211)
112 TIGR02196 GlrX_YruB Glutaredox 99.3 7.6E-11 1.6E-15 67.1 8.3 69 41-119 2-74 (74)
113 PF14595 Thioredoxin_9: Thiore 99.2 1.2E-10 2.6E-15 74.0 9.0 84 33-120 40-127 (129)
114 cd00340 GSH_Peroxidase Glutath 99.2 8.3E-11 1.8E-15 76.7 8.4 81 33-117 21-151 (152)
115 PF06110 DUF953: Eukaryotic pr 99.2 2.2E-10 4.7E-15 71.5 9.0 100 17-119 2-118 (119)
116 PF11009 DUF2847: Protein of u 99.2 6.7E-10 1.4E-14 67.7 10.9 95 15-114 2-104 (105)
117 KOG0914 Thioredoxin-like prote 99.2 2.4E-11 5.2E-16 82.1 4.8 94 11-109 123-224 (265)
118 PF13728 TraF: F plasmid trans 99.2 1E-09 2.3E-14 75.4 11.7 88 25-118 113-214 (215)
119 KOG3414 Component of the U4/U6 99.2 1.1E-09 2.4E-14 68.0 10.5 103 14-121 5-119 (142)
120 cd03017 PRX_BCP Peroxiredoxin 99.1 8.1E-10 1.7E-14 70.6 9.7 82 33-117 22-138 (140)
121 PTZ00256 glutathione peroxidas 99.1 4.4E-10 9.6E-15 75.5 8.5 90 32-123 38-182 (183)
122 COG0526 TrxA Thiol-disulfide i 99.1 5.3E-10 1.1E-14 68.0 8.0 83 34-119 32-121 (127)
123 PF13192 Thioredoxin_3: Thiore 99.1 2.2E-09 4.8E-14 62.1 9.5 70 44-119 5-76 (76)
124 TIGR02200 GlrX_actino Glutared 99.1 9.1E-10 2E-14 63.4 7.8 70 41-119 2-76 (77)
125 cd03014 PRX_Atyp2cys Peroxired 99.1 1.4E-09 2.9E-14 70.0 9.0 83 33-118 25-141 (143)
126 COG2143 Thioredoxin-related pr 99.1 4.2E-09 9.1E-14 67.9 10.6 84 33-119 41-146 (182)
127 cd03015 PRX_Typ2cys Peroxiredo 99.1 5.5E-09 1.2E-13 69.5 11.4 87 33-122 28-157 (173)
128 KOG2501 Thioredoxin, nucleored 99.1 7.7E-10 1.7E-14 71.7 6.7 70 33-105 32-131 (157)
129 PRK00522 tpx lipid hydroperoxi 99.0 3.4E-09 7.4E-14 70.2 10.0 74 33-109 43-150 (167)
130 cd01659 TRX_superfamily Thiore 99.0 2E-09 4.4E-14 58.5 7.3 60 41-100 1-63 (69)
131 TIGR02739 TraF type-F conjugat 99.0 9.4E-09 2E-13 72.1 12.2 95 25-125 143-251 (256)
132 PF00578 AhpC-TSA: AhpC/TSA fa 99.0 3E-09 6.6E-14 66.5 8.3 69 33-104 24-123 (124)
133 TIGR03137 AhpC peroxiredoxin. 99.0 5.7E-09 1.2E-13 70.3 9.9 86 33-121 30-155 (187)
134 PF02966 DIM1: Mitosis protein 99.0 3.1E-08 6.6E-13 62.3 11.2 103 14-122 2-117 (133)
135 KOG3425 Uncharacterized conser 98.9 6E-09 1.3E-13 64.2 7.3 78 18-99 10-104 (128)
136 PRK11200 grxA glutaredoxin 1; 98.9 1.1E-08 2.4E-13 60.3 8.3 75 41-122 3-83 (85)
137 PRK13703 conjugal pilus assemb 98.9 3.9E-08 8.4E-13 68.7 12.1 89 33-125 142-244 (248)
138 PRK10877 protein disulfide iso 98.9 9.6E-09 2.1E-13 71.4 9.1 80 33-121 106-230 (232)
139 PRK09437 bcp thioredoxin-depen 98.9 2.9E-08 6.3E-13 64.6 10.9 81 33-116 29-147 (154)
140 KOG0911 Glutaredoxin-related p 98.9 1.4E-09 3E-14 73.9 4.3 103 13-124 2-104 (227)
141 cd03018 PRX_AhpE_like Peroxire 98.9 4E-08 8.8E-13 63.4 10.4 75 33-110 26-134 (149)
142 cd02991 UAS_ETEA UAS family, E 98.9 7.9E-08 1.7E-12 60.0 10.8 97 22-123 5-114 (116)
143 KOG2603 Oligosaccharyltransfer 98.9 2.2E-08 4.8E-13 71.1 8.9 110 9-123 37-167 (331)
144 cd02970 PRX_like2 Peroxiredoxi 98.9 3.3E-08 7.2E-13 63.6 8.8 42 34-78 23-67 (149)
145 PRK10606 btuE putative glutath 98.8 3.8E-08 8.3E-13 66.1 9.3 42 32-77 23-66 (183)
146 TIGR02180 GRX_euk Glutaredoxin 98.8 2.2E-08 4.8E-13 58.5 6.6 60 41-103 1-65 (84)
147 PRK10382 alkyl hydroperoxide r 98.8 9.8E-08 2.1E-12 64.3 10.4 86 33-121 30-155 (187)
148 cd02971 PRX_family Peroxiredox 98.8 5.3E-08 1.1E-12 62.1 8.6 75 33-110 21-130 (140)
149 KOG0913 Thiol-disulfide isomer 98.8 2.7E-09 5.8E-14 72.9 2.5 101 10-121 22-125 (248)
150 cd02976 NrdH NrdH-redoxin (Nrd 98.8 6.3E-08 1.4E-12 54.7 7.7 68 41-118 2-73 (73)
151 TIGR03143 AhpF_homolog putativ 98.8 9.9E-08 2.1E-12 74.0 11.1 74 41-118 480-554 (555)
152 PF03190 Thioredox_DsbH: Prote 98.8 6E-08 1.3E-12 63.6 8.3 78 26-106 29-119 (163)
153 PRK13190 putative peroxiredoxi 98.8 1.5E-07 3.3E-12 64.2 10.1 88 33-123 26-155 (202)
154 PRK15000 peroxidase; Provision 98.8 2E-07 4.4E-12 63.4 10.5 86 33-121 33-161 (200)
155 TIGR02183 GRXA Glutaredoxin, G 98.7 1.8E-07 3.9E-12 55.3 8.3 75 41-122 2-82 (86)
156 cd02968 SCO SCO (an acronym fo 98.7 7.7E-08 1.7E-12 61.6 6.8 42 33-77 21-68 (142)
157 PRK15317 alkyl hydroperoxide r 98.7 3.3E-07 7.1E-12 70.5 11.1 77 41-121 120-197 (517)
158 cd03023 DsbA_Com1_like DsbA fa 98.7 4.1E-07 8.9E-12 58.6 9.7 40 33-75 4-43 (154)
159 PRK11657 dsbG disulfide isomer 98.7 2.6E-07 5.7E-12 65.0 9.4 83 33-119 116-249 (251)
160 KOG3170 Conserved phosducin-li 98.7 3.9E-07 8.4E-12 61.2 9.6 108 6-121 85-200 (240)
161 cd03020 DsbA_DsbC_DsbG DsbA fa 98.7 1.4E-07 3.1E-12 63.9 7.8 76 33-118 76-197 (197)
162 PF00462 Glutaredoxin: Glutare 98.6 3.2E-07 6.9E-12 50.5 7.5 55 41-102 1-59 (60)
163 cd03016 PRX_1cys Peroxiredoxin 98.6 1.2E-06 2.6E-11 59.8 10.6 82 41-122 30-154 (203)
164 PRK13599 putative peroxiredoxi 98.6 1.1E-06 2.4E-11 60.5 10.4 87 33-121 27-155 (215)
165 PF01216 Calsequestrin: Calseq 98.6 2.9E-06 6.4E-11 61.4 12.7 104 11-123 33-145 (383)
166 KOG3171 Conserved phosducin-li 98.6 2.7E-07 5.8E-12 62.6 7.0 106 11-121 137-250 (273)
167 PRK13189 peroxiredoxin; Provis 98.6 1.1E-06 2.4E-11 60.7 10.2 88 33-122 34-163 (222)
168 PRK13191 putative peroxiredoxi 98.6 1.4E-06 2.9E-11 60.1 10.2 86 33-121 32-160 (215)
169 TIGR03140 AhpF alkyl hydropero 98.6 1.4E-06 3E-11 67.1 11.2 77 41-121 121-198 (515)
170 PF13848 Thioredoxin_6: Thiore 98.5 7.2E-06 1.6E-10 54.4 13.1 102 11-120 76-184 (184)
171 TIGR02194 GlrX_NrdH Glutaredox 98.5 6.7E-07 1.4E-11 51.0 7.0 67 42-117 2-71 (72)
172 PTZ00137 2-Cys peroxiredoxin; 98.5 2.8E-06 6E-11 60.1 10.8 86 33-121 97-224 (261)
173 PRK10329 glutaredoxin-like pro 98.5 2.6E-06 5.7E-11 49.8 8.9 73 41-123 3-78 (81)
174 PF07449 HyaE: Hydrogenase-1 e 98.5 3.6E-06 7.7E-11 51.6 9.1 90 11-109 8-101 (107)
175 PHA03050 glutaredoxin; Provisi 98.4 1.4E-06 3.1E-11 53.7 6.8 62 41-104 15-81 (108)
176 cd03019 DsbA_DsbA DsbA family, 98.4 4.2E-06 9.2E-11 55.4 9.5 39 33-74 14-53 (178)
177 PTZ00253 tryparedoxin peroxida 98.4 6.3E-06 1.4E-10 56.0 10.5 86 33-121 35-163 (199)
178 PF13462 Thioredoxin_4: Thiore 98.4 7.1E-06 1.5E-10 53.4 10.4 80 33-120 11-162 (162)
179 cd02983 P5_C P5 family, C-term 98.4 2.2E-05 4.8E-10 50.0 11.8 107 13-126 3-119 (130)
180 PF05768 DUF836: Glutaredoxin- 98.4 8.3E-06 1.8E-10 47.6 8.8 77 41-119 2-81 (81)
181 TIGR02190 GlrX-dom Glutaredoxi 98.4 3.5E-06 7.5E-11 48.9 7.1 57 41-104 10-69 (79)
182 PRK10954 periplasmic protein d 98.4 7E-06 1.5E-10 56.1 9.5 40 33-75 36-79 (207)
183 cd03419 GRX_GRXh_1_2_like Glut 98.3 3.1E-06 6.7E-11 49.1 6.7 58 41-103 2-64 (82)
184 TIGR02189 GlrX-like_plant Glut 98.3 1.5E-06 3.2E-11 52.8 5.2 57 41-104 10-73 (99)
185 cd02066 GRX_family Glutaredoxi 98.3 5.2E-06 1.1E-10 46.4 6.8 57 41-104 2-62 (72)
186 TIGR03143 AhpF_homolog putativ 98.3 1.3E-05 2.9E-10 62.2 11.0 103 20-127 354-459 (555)
187 cd03029 GRX_hybridPRX5 Glutare 98.3 1.3E-05 2.8E-10 45.6 8.3 66 41-118 3-71 (72)
188 TIGR02181 GRX_bact Glutaredoxi 98.3 3.3E-06 7.1E-11 48.9 5.8 56 42-104 2-61 (79)
189 cd03027 GRX_DEP Glutaredoxin ( 98.3 8.8E-06 1.9E-10 46.4 7.3 57 41-104 3-63 (73)
190 cd03418 GRX_GRXb_1_3_like Glut 98.2 9.4E-06 2E-10 46.3 7.1 57 41-104 2-63 (75)
191 cd03072 PDI_b'_ERp44 PDIb' fam 98.1 4.7E-05 1E-09 47.1 9.1 98 16-123 3-109 (111)
192 COG0695 GrxC Glutaredoxin and 98.1 4.2E-05 9.1E-10 44.6 7.7 54 41-101 3-62 (80)
193 TIGR00365 monothiol glutaredox 98.1 5.1E-05 1.1E-09 45.8 7.8 51 47-104 25-79 (97)
194 cd02981 PDI_b_family Protein D 98.0 0.00017 3.6E-09 43.1 9.4 92 15-120 2-96 (97)
195 COG1225 Bcp Peroxiredoxin [Pos 97.9 0.00016 3.4E-09 47.4 8.9 91 28-121 24-155 (157)
196 PRK10638 glutaredoxin 3; Provi 97.9 7.5E-05 1.6E-09 43.6 6.8 57 41-104 4-64 (83)
197 PRK10824 glutaredoxin-4; Provi 97.9 7.1E-05 1.5E-09 46.6 6.4 51 47-104 28-82 (115)
198 cd02972 DsbA_family DsbA famil 97.8 0.0001 2.2E-09 43.4 6.5 58 41-98 1-91 (98)
199 PF00837 T4_deiodinase: Iodoth 97.8 0.00014 3E-09 50.5 7.8 111 4-121 74-236 (237)
200 cd03028 GRX_PICOT_like Glutare 97.8 0.00019 4.2E-09 42.6 7.1 50 47-103 21-74 (90)
201 cd03073 PDI_b'_ERp72_ERp57 PDI 97.8 0.00039 8.4E-09 43.0 8.5 74 48-121 29-110 (111)
202 KOG1752 Glutaredoxin and relat 97.6 0.00032 7E-09 42.9 6.1 58 41-104 16-79 (104)
203 PRK12759 bifunctional gluaredo 97.5 0.00043 9.3E-09 52.1 6.9 57 41-104 4-72 (410)
204 PTZ00062 glutaredoxin; Provisi 97.5 0.0013 2.9E-08 45.0 8.1 51 47-104 126-180 (204)
205 COG1651 DsbG Protein-disulfide 97.3 0.0023 5E-08 44.6 8.2 39 34-75 84-122 (244)
206 PF01323 DSBA: DSBA-like thior 97.3 0.0055 1.2E-07 40.9 9.8 33 41-73 2-34 (193)
207 PF13743 Thioredoxin_5: Thiore 97.2 0.0036 7.8E-08 41.8 7.7 32 43-74 2-34 (176)
208 cd03067 PDI_b_PDIR_N PDIb fami 97.0 0.017 3.7E-07 35.0 8.5 97 15-119 4-109 (112)
209 cd03066 PDI_b_Calsequestrin_mi 96.9 0.033 7.1E-07 33.7 9.3 94 14-121 2-100 (102)
210 cd03031 GRX_GRX_like Glutaredo 96.8 0.01 2.2E-07 38.6 7.2 57 41-104 2-72 (147)
211 cd02978 KaiB_like KaiB-like fa 96.6 0.01 2.2E-07 33.8 5.4 57 41-97 4-62 (72)
212 PF13848 Thioredoxin_6: Thiore 96.6 0.028 6.1E-07 37.1 8.4 65 54-122 7-75 (184)
213 cd02974 AhpF_NTD_N Alkyl hydro 96.5 0.073 1.6E-06 31.9 10.5 84 21-121 8-93 (94)
214 PF07912 ERp29_N: ERp29, N-ter 96.5 0.098 2.1E-06 32.9 11.1 100 12-121 4-118 (126)
215 COG1331 Highly conserved prote 96.4 0.017 3.6E-07 45.8 7.1 79 19-104 32-123 (667)
216 KOG2640 Thioredoxin [Function 96.2 0.0021 4.6E-08 46.2 1.2 87 33-123 75-163 (319)
217 cd03069 PDI_b_ERp57 PDIb famil 96.1 0.14 3E-06 31.1 9.1 93 14-121 2-103 (104)
218 TIGR02654 circ_KaiB circadian 96.0 0.028 6E-07 33.2 5.1 68 41-109 6-75 (87)
219 PRK09301 circadian clock prote 96.0 0.026 5.7E-07 34.3 5.1 78 34-115 5-86 (103)
220 KOG2792 Putative cytochrome C 96.0 0.056 1.2E-06 38.2 7.4 96 26-124 131-277 (280)
221 COG4545 Glutaredoxin-related p 96.0 0.024 5.1E-07 32.4 4.5 55 43-103 6-76 (85)
222 cd03013 PRX5_like Peroxiredoxi 95.9 0.028 6.1E-07 36.7 5.4 42 33-77 28-74 (155)
223 cd03074 PDI_b'_Calsequestrin_C 95.9 0.2 4.4E-06 30.8 9.9 98 20-122 8-120 (120)
224 TIGR02742 TrbC_Ftype type-F co 95.9 0.15 3.2E-06 32.5 8.3 72 20-101 11-82 (130)
225 COG1999 Uncharacterized protei 95.8 0.32 6.9E-06 33.4 10.4 95 27-124 60-206 (207)
226 PRK15317 alkyl hydroperoxide r 95.8 0.26 5.7E-06 38.3 11.0 90 21-127 8-99 (517)
227 KOG2507 Ubiquitin regulatory p 95.7 0.26 5.7E-06 37.3 10.2 97 22-122 7-111 (506)
228 cd02977 ArsC_family Arsenate R 95.6 0.013 2.8E-07 35.6 2.8 33 42-79 2-34 (105)
229 TIGR03140 AhpF alkyl hydropero 95.6 0.36 7.8E-06 37.5 11.1 91 21-127 8-100 (515)
230 PF06764 DUF1223: Protein of u 95.4 0.38 8.2E-06 33.0 9.5 79 41-124 2-100 (202)
231 COG2761 FrnE Predicted dithiol 95.3 0.55 1.2E-05 32.7 10.1 43 81-127 175-218 (225)
232 PF09673 TrbC_Ftype: Type-F co 95.3 0.34 7.4E-06 30.0 8.3 72 19-99 9-80 (113)
233 COG3634 AhpF Alkyl hydroperoxi 95.2 0.17 3.6E-06 37.8 7.7 80 33-119 115-195 (520)
234 cd03040 GST_N_mPGES2 GST_N fam 95.1 0.24 5.2E-06 27.9 6.8 73 41-122 2-76 (77)
235 COG0386 BtuE Glutathione perox 95.1 0.54 1.2E-05 30.8 8.9 88 32-123 23-161 (162)
236 TIGR01617 arsC_related transcr 94.9 0.062 1.3E-06 33.4 4.2 34 42-80 2-35 (117)
237 PF06491 Disulph_isomer: Disul 94.9 0.21 4.5E-06 31.7 6.4 107 7-122 11-132 (136)
238 cd03036 ArsC_like Arsenate Red 94.8 0.042 9.1E-07 33.9 3.2 34 42-80 2-35 (111)
239 COG5429 Uncharacterized secret 94.7 0.2 4.4E-06 35.0 6.6 82 41-125 45-144 (261)
240 PRK01655 spxA transcriptional 94.6 0.07 1.5E-06 33.9 4.0 33 41-78 2-34 (131)
241 cd03035 ArsC_Yffb Arsenate Red 94.4 0.053 1.2E-06 33.1 3.0 34 42-80 2-35 (105)
242 cd03068 PDI_b_ERp72 PDIb famil 94.2 0.75 1.6E-05 28.1 10.3 71 14-97 2-73 (107)
243 COG0450 AhpC Peroxiredoxin [Po 94.1 0.59 1.3E-05 31.8 7.7 86 33-121 32-160 (194)
244 PF07689 KaiB: KaiB domain; I 93.8 0.021 4.6E-07 33.4 0.4 53 44-96 3-57 (82)
245 cd03060 GST_N_Omega_like GST_N 93.7 0.21 4.6E-06 27.7 4.4 56 43-102 3-59 (71)
246 cd03041 GST_N_2GST_N GST_N fam 93.6 0.74 1.6E-05 26.0 8.3 70 41-120 2-75 (77)
247 cd03032 ArsC_Spx Arsenate Redu 93.5 0.17 3.7E-06 31.3 4.1 34 41-79 2-35 (115)
248 PRK12559 transcriptional regul 93.5 0.13 2.8E-06 32.7 3.7 33 41-78 2-34 (131)
249 PF04592 SelP_N: Selenoprotein 93.5 1.7 3.7E-05 30.5 9.2 46 27-77 21-71 (238)
250 PHA03075 glutaredoxin-like pro 92.9 0.17 3.6E-06 31.5 3.3 27 41-67 5-31 (123)
251 cd00570 GST_N_family Glutathio 92.9 0.27 5.8E-06 26.3 4.0 51 43-96 3-55 (71)
252 cd03051 GST_N_GTT2_like GST_N 92.5 0.47 1E-05 26.1 4.7 51 43-96 3-57 (74)
253 PF06053 DUF929: Domain of unk 92.5 0.8 1.7E-05 32.4 6.6 56 33-97 57-112 (249)
254 PF06953 ArsD: Arsenical resis 92.4 1.3 2.8E-05 28.0 6.9 65 56-124 30-104 (123)
255 PRK13344 spxA transcriptional 91.6 0.32 7E-06 30.9 3.6 33 41-78 2-34 (132)
256 PF02630 SCO1-SenC: SCO1/SenC; 91.6 1 2.2E-05 29.9 6.2 43 32-77 50-97 (174)
257 cd03059 GST_N_SspA GST_N famil 91.4 0.41 8.9E-06 26.5 3.6 51 42-95 2-53 (73)
258 cd03037 GST_N_GRX2 GST_N famil 91.1 0.76 1.6E-05 25.4 4.5 51 43-96 3-53 (71)
259 KOG1651 Glutathione peroxidase 91.1 0.9 1.9E-05 30.1 5.3 95 26-123 26-170 (171)
260 PF13778 DUF4174: Domain of un 90.4 2.9 6.4E-05 26.0 8.4 81 41-121 13-111 (118)
261 cd02990 UAS_FAF1 UAS family, F 90.3 3.3 7.3E-05 26.6 12.0 96 22-122 5-133 (136)
262 cd03045 GST_N_Delta_Epsilon GS 90.3 1 2.2E-05 24.9 4.6 51 43-96 3-57 (74)
263 COG5494 Predicted thioredoxin/ 90.3 2.8 6.2E-05 29.0 7.3 73 41-120 13-86 (265)
264 COG3531 Predicted protein-disu 90.0 0.87 1.9E-05 31.1 4.6 43 81-123 165-210 (212)
265 COG0278 Glutaredoxin-related p 89.6 3.2 7E-05 25.2 6.8 68 33-104 14-83 (105)
266 COG3019 Predicted metal-bindin 89.4 4.2 9E-05 26.3 8.2 71 41-120 28-102 (149)
267 cd03033 ArsC_15kD Arsenate Red 88.5 0.68 1.5E-05 28.7 3.1 33 41-78 2-34 (113)
268 cd03025 DsbA_FrnE_like DsbA fa 87.8 0.9 2E-05 30.2 3.7 26 41-66 3-28 (193)
269 PF01216 Calsequestrin: Calseq 87.7 9.8 0.00021 28.5 12.3 108 11-124 248-370 (383)
270 cd03055 GST_N_Omega GST_N fami 87.6 2.5 5.4E-05 24.6 5.1 53 41-96 19-72 (89)
271 PF13417 GST_N_3: Glutathione 87.4 3.5 7.6E-05 23.0 8.7 71 43-123 1-72 (75)
272 cd03024 DsbA_FrnE DsbA family, 86.6 1.1 2.4E-05 29.9 3.6 35 80-118 165-200 (201)
273 TIGR00014 arsC arsenate reduct 86.4 0.93 2E-05 28.0 2.9 34 42-80 2-35 (114)
274 cd03034 ArsC_ArsC Arsenate Red 85.4 1.1 2.4E-05 27.5 2.9 33 42-79 2-34 (112)
275 PRK13730 conjugal transfer pil 84.9 2.5 5.5E-05 29.0 4.5 30 79-109 151-180 (212)
276 PF04134 DUF393: Protein of un 84.3 1.9 4.1E-05 26.2 3.6 57 44-101 2-61 (114)
277 cd03022 DsbA_HCCA_Iso DsbA fam 84.1 1.4 3E-05 29.2 3.1 33 81-118 158-191 (192)
278 PF09822 ABC_transp_aux: ABC-t 82.7 15 0.00032 26.1 12.0 72 12-90 7-88 (271)
279 PF00255 GSHPx: Glutathione pe 79.8 9.1 0.0002 23.5 5.3 43 32-78 19-63 (108)
280 PF11287 DUF3088: Protein of u 79.1 3.6 7.8E-05 25.5 3.3 50 49-98 24-76 (112)
281 COG1393 ArsC Arsenate reductas 78.5 3 6.6E-05 26.0 3.0 24 41-64 3-26 (117)
282 KOG3445 Mitochondrial/chloropl 76.9 17 0.00037 23.4 7.5 75 41-126 26-106 (145)
283 PRK10853 putative reductase; P 75.2 3.9 8.4E-05 25.5 2.8 33 41-78 2-34 (118)
284 PRK10026 arsenate reductase; P 75.1 4.6 0.0001 26.1 3.2 32 41-77 4-35 (141)
285 PF03960 ArsC: ArsC family; I 74.1 6.5 0.00014 23.9 3.6 32 44-80 1-32 (110)
286 COG3411 Ferredoxin [Energy pro 72.8 14 0.0003 20.5 4.3 32 91-125 17-48 (64)
287 cd03056 GST_N_4 GST_N family, 72.4 13 0.00029 20.0 5.1 51 43-96 3-57 (73)
288 cd03052 GST_N_GDAP1 GST_N fami 72.1 15 0.00032 20.4 5.7 56 42-102 2-61 (73)
289 TIGR01616 nitro_assoc nitrogen 70.0 7.4 0.00016 24.6 3.2 31 41-76 3-33 (126)
290 cd03025 DsbA_FrnE_like DsbA fa 68.0 6.7 0.00015 25.9 2.9 21 81-101 160-180 (193)
291 cd03021 DsbA_GSTK DsbA family, 66.3 7.7 0.00017 26.4 3.0 38 81-118 170-208 (209)
292 KOG1364 Predicted ubiquitin re 65.0 11 0.00025 28.0 3.7 57 69-125 133-192 (356)
293 cd03030 GRX_SH3BGR Glutaredoxi 64.7 27 0.00059 20.7 5.7 44 58-104 21-72 (92)
294 PRK13669 hypothetical protein; 63.3 27 0.00059 20.2 5.3 55 59-124 20-74 (78)
295 PRK00366 ispG 4-hydroxy-3-meth 63.0 21 0.00045 26.8 4.8 53 69-121 299-356 (360)
296 PF07315 DUF1462: Protein of u 61.5 32 0.0007 20.5 9.2 67 48-118 8-92 (93)
297 cd03053 GST_N_Phi GST_N family 59.6 27 0.00059 19.0 5.1 52 41-95 2-57 (76)
298 PF14424 Toxin-deaminase: The 58.1 35 0.00075 21.8 4.7 27 46-75 105-131 (133)
299 PF08806 Sep15_SelM: Sep15/Sel 57.8 21 0.00045 20.6 3.3 32 90-121 41-75 (78)
300 KOG1422 Intracellular Cl- chan 57.1 64 0.0014 22.5 6.9 68 48-125 20-88 (221)
301 COG0821 gcpE 1-hydroxy-2-methy 56.9 37 0.00081 25.4 5.1 77 49-125 264-354 (361)
302 cd03024 DsbA_FrnE DsbA family, 54.9 28 0.00062 23.0 4.2 25 43-67 3-27 (201)
303 COG2077 Tpx Peroxiredoxin [Pos 54.1 61 0.0013 21.4 5.8 43 33-77 43-85 (158)
304 cd03071 PDI_b'_NRX PDIb' famil 53.8 51 0.0011 20.4 7.9 87 33-122 13-115 (116)
305 PF07293 DUF1450: Protein of u 53.4 43 0.00092 19.3 6.0 59 56-125 17-75 (78)
306 TIGR03759 conj_TIGR03759 integ 52.9 73 0.0016 21.9 6.4 32 41-75 112-143 (200)
307 KOG0852 Alkyl hydroperoxide re 51.7 74 0.0016 21.6 7.6 87 32-121 31-160 (196)
308 KOG0855 Alkyl hydroperoxide re 50.8 75 0.0016 21.4 7.4 62 33-100 89-185 (211)
309 PF00352 TBP: Transcription fa 49.8 43 0.00093 19.3 3.9 32 91-124 49-81 (86)
310 KOG0854 Alkyl hydroperoxide re 49.6 82 0.0018 21.5 8.4 38 41-78 35-76 (224)
311 PF02401 LYTB: LytB protein; 47.8 1E+02 0.0023 22.3 6.2 96 21-123 168-279 (281)
312 PF11238 DUF3039: Protein of u 47.3 23 0.00049 19.2 2.1 24 33-59 23-57 (58)
313 cd03049 GST_N_3 GST_N family, 47.3 46 0.001 18.0 4.8 53 43-96 3-56 (73)
314 cd03022 DsbA_HCCA_Iso DsbA fam 47.2 25 0.00055 23.0 2.9 25 43-67 3-27 (192)
315 cd03062 TRX_Fd_Sucrase TRX-lik 45.4 64 0.0014 19.2 4.2 32 90-124 52-85 (97)
316 PRK09481 sspA stringent starva 45.3 84 0.0018 21.1 5.3 52 41-95 11-63 (211)
317 PF04551 GcpE: GcpE protein; 45.2 25 0.00054 26.4 2.8 73 49-121 271-358 (359)
318 PF12617 LdpA_C: Iron-Sulfur b 45.0 87 0.0019 21.3 5.1 68 41-109 10-83 (183)
319 PF11072 DUF2859: Protein of u 43.3 38 0.00083 21.9 3.1 17 80-96 121-137 (142)
320 cd03061 GST_N_CLIC GST_N famil 43.1 70 0.0015 18.9 6.7 66 47-122 20-86 (91)
321 cd07973 Spt4 Transcription elo 43.0 42 0.00092 20.3 3.1 69 44-120 18-93 (98)
322 COG3011 Predicted thiol-disulf 42.7 92 0.002 20.1 6.6 68 33-104 5-74 (137)
323 KOG0496 Beta-galactosidase [Ca 41.4 82 0.0018 25.7 5.2 97 19-123 47-153 (649)
324 KOG0912 Thiol-disulfide isomer 41.3 1E+02 0.0022 23.0 5.3 98 10-121 106-207 (375)
325 TIGR02743 TraW type-F conjugat 40.3 36 0.00079 23.4 2.8 26 77-103 172-197 (202)
326 PF05176 ATP-synt_10: ATP10 pr 40.3 1.4E+02 0.0029 21.3 8.0 40 81-120 205-248 (252)
327 TIGR03765 ICE_PFL_4695 integra 38.5 45 0.00097 20.5 2.7 17 80-96 83-99 (105)
328 cd03044 GST_N_EF1Bgamma GST_N 38.5 69 0.0015 17.5 4.5 51 43-96 3-56 (75)
329 TIGR02652 conserved hypothetic 38.4 12 0.00026 24.2 0.3 14 48-61 11-24 (163)
330 PF14097 SpoVAE: Stage V sporu 38.2 42 0.00092 22.5 2.8 57 9-72 30-86 (180)
331 PF09654 DUF2396: Protein of u 38.1 12 0.00026 24.2 0.2 14 48-61 8-21 (161)
332 COG0735 Fur Fe2+/Zn2+ uptake r 37.9 1.1E+02 0.0023 19.7 4.7 40 12-54 100-141 (145)
333 cd03058 GST_N_Tau GST_N family 37.4 71 0.0015 17.3 5.3 51 43-96 3-55 (74)
334 cd06353 PBP1_BmpA_Med_like Per 37.3 1.2E+02 0.0027 21.2 5.3 49 19-77 42-90 (258)
335 PRK10387 glutaredoxin 2; Provi 36.8 1.2E+02 0.0026 20.1 5.1 55 44-102 4-58 (210)
336 KOG0911 Glutaredoxin-related p 36.7 1.5E+02 0.0033 20.9 6.2 53 47-104 152-206 (227)
337 PF07894 DUF1669: Protein of u 36.7 1.7E+02 0.0036 21.4 5.9 58 41-99 122-183 (284)
338 TIGR01101 V_ATP_synt_F vacuola 36.6 1.1E+02 0.0023 19.1 5.6 65 54-123 47-114 (115)
339 PF14307 Glyco_tran_WbsX: Glyc 36.3 93 0.002 23.1 4.7 41 33-76 157-199 (345)
340 COG3531 Predicted protein-disu 35.7 65 0.0014 22.3 3.4 33 41-74 4-36 (212)
341 PF09695 YtfJ_HI0045: Bacteria 34.4 1.4E+02 0.003 19.8 8.1 28 94-121 128-157 (160)
342 cd03050 GST_N_Theta GST_N fami 34.1 83 0.0018 17.1 5.2 50 43-95 3-56 (76)
343 KOG2244 Highly conserved prote 33.8 46 0.001 26.8 2.8 71 20-97 102-184 (786)
344 COG2101 SPT15 TATA-box binding 33.2 1.3E+02 0.0028 20.4 4.4 30 93-124 55-85 (185)
345 TIGR00216 ispH_lytB (E)-4-hydr 33.0 1.9E+02 0.0042 21.0 6.0 77 42-122 185-277 (280)
346 PF07511 DUF1525: Protein of u 32.8 1.3E+02 0.0027 18.8 4.4 15 83-97 76-90 (114)
347 PRK13738 conjugal transfer pil 31.5 63 0.0014 22.4 2.9 27 77-103 170-197 (209)
348 PF05679 CHGN: Chondroitin N-a 31.4 2.6E+02 0.0057 22.0 7.2 53 40-92 284-340 (499)
349 PF03227 GILT: Gamma interfero 30.9 1.3E+02 0.0027 18.2 4.6 21 41-61 3-24 (108)
350 PF05988 DUF899: Bacterial pro 30.7 1.9E+02 0.0041 20.2 6.4 32 46-77 82-115 (211)
351 PRK09702 PTS system arbutin-sp 30.4 1.5E+02 0.0033 19.6 4.5 31 98-128 122-152 (161)
352 TIGR01287 nifH nitrogenase iro 30.3 40 0.00086 23.8 1.9 51 33-88 220-270 (275)
353 PF07700 HNOB: Heme NO binding 29.9 1.6E+02 0.0036 19.2 4.9 40 34-76 127-168 (171)
354 PTZ00151 translationally contr 29.4 67 0.0014 21.6 2.7 13 89-101 155-167 (172)
355 PF11317 DUF3119: Protein of u 29.1 1.4E+02 0.003 18.7 3.8 34 89-122 81-115 (116)
356 KOG4079 Putative mitochondrial 28.5 90 0.0019 20.2 3.0 35 91-125 74-110 (169)
357 PHA02151 hypothetical protein 28.4 34 0.00075 22.7 1.2 10 41-50 207-216 (217)
358 TIGR03406 FeS_long_SufT probab 28.3 1.7E+02 0.0037 19.6 4.5 40 41-80 118-157 (174)
359 PF04908 SH3BGR: SH3-binding, 28.0 1.4E+02 0.0031 17.9 3.9 41 42-82 3-45 (99)
360 cd00307 RuBisCO_small_like Rib 27.6 1.1E+02 0.0025 17.8 3.2 29 49-77 36-71 (84)
361 cd03039 GST_N_Sigma_like GST_N 27.6 71 0.0015 17.2 2.3 50 44-96 4-55 (72)
362 PF13120 DUF3974: Domain of un 27.5 42 0.00091 20.2 1.3 23 44-66 32-54 (126)
363 cd06403 PB1_Par6 The PB1 domai 26.9 1.4E+02 0.003 17.4 3.4 21 10-30 49-69 (80)
364 COG5309 Exo-beta-1,3-glucanase 26.5 2.6E+02 0.0057 20.5 5.5 96 19-123 61-163 (305)
365 TIGR03757 conj_TIGR03757 integ 26.3 1.7E+02 0.0037 18.2 4.1 16 83-98 77-92 (113)
366 TIGR02182 GRXB Glutaredoxin, G 26.3 2.1E+02 0.0045 19.2 5.0 54 44-101 3-56 (209)
367 cd04516 TBP_eukaryotes eukaryo 26.1 2E+02 0.0043 19.2 4.5 28 93-122 49-77 (174)
368 PRK08351 DNA-directed RNA poly 26.0 49 0.0011 18.2 1.3 40 45-92 14-53 (61)
369 KOG0833 Cytidine deaminase [Nu 26.0 39 0.00085 22.7 1.1 16 46-61 102-117 (173)
370 PLN00062 TATA-box-binding prot 26.0 1.9E+02 0.0042 19.4 4.4 29 92-122 48-77 (179)
371 PRK00394 transcription factor; 25.5 1.9E+02 0.0041 19.4 4.4 30 92-123 47-77 (179)
372 PF02610 Arabinose_Isome: L-ar 25.4 1.7E+02 0.0036 22.2 4.4 44 17-63 54-97 (359)
373 cd00652 TBP_TLF TATA box bindi 25.4 2E+02 0.0044 19.1 4.5 58 59-122 19-77 (174)
374 cd04518 TBP_archaea archaeal T 25.2 2.1E+02 0.0045 19.1 4.5 30 93-124 140-170 (174)
375 KOG2868 Decapping enzyme compl 24.4 2E+02 0.0044 21.5 4.5 27 54-80 22-48 (335)
376 COG4604 CeuD ABC-type enteroch 24.0 2.7E+02 0.0058 19.7 5.7 49 49-105 168-217 (252)
377 PHA02091 hypothetical protein 23.6 73 0.0016 17.5 1.7 18 40-57 47-69 (72)
378 KOG4277 Uncharacterized conser 23.5 3.2E+02 0.007 20.5 9.2 95 12-120 133-229 (468)
379 cd01236 PH_outspread Outspread 23.3 1.8E+02 0.004 17.6 4.5 50 73-122 52-101 (104)
380 cd03375 TPP_OGFOR Thiamine pyr 23.2 1.7E+02 0.0037 19.6 3.9 27 17-46 157-183 (193)
381 cd03054 GST_N_Metaxin GST_N fa 22.3 75 0.0016 17.1 1.7 16 47-62 14-29 (72)
382 cd05863 Ig2_VEGFR-3 Second imm 22.2 87 0.0019 17.1 1.9 14 91-104 12-25 (67)
383 COG0525 ValS Valyl-tRNA synthe 22.1 3E+02 0.0065 23.6 5.6 37 89-125 286-327 (877)
384 COG4175 ProV ABC-type proline/ 21.6 1.9E+02 0.0042 21.9 4.0 56 44-107 192-248 (386)
385 PF10865 DUF2703: Domain of un 21.5 2.2E+02 0.0048 17.8 4.8 55 47-106 13-75 (120)
386 TIGR00595 priA primosomal prot 21.4 2.3E+02 0.0049 22.4 4.7 23 56-78 272-294 (505)
387 PF07895 DUF1673: Protein of u 21.2 29 0.00064 23.8 -0.2 11 47-57 12-22 (205)
388 COG4782 Uncharacterized protei 21.2 2.3E+02 0.005 21.6 4.4 46 80-125 137-188 (377)
389 PRK01045 ispH 4-hydroxy-3-meth 21.0 3.5E+02 0.0075 19.9 7.3 97 21-124 169-281 (298)
390 KOG1371 UDP-glucose 4-epimeras 20.9 3.4E+02 0.0073 20.5 5.1 54 46-99 33-86 (343)
391 cd04517 TLF TBP-like factors ( 20.8 2.7E+02 0.0059 18.6 4.6 30 92-123 48-78 (174)
392 smart00592 BRK domain in trans 20.7 92 0.002 15.9 1.7 24 98-121 12-35 (45)
393 KOG0095 GTPase Rab30, small G 20.5 2.7E+02 0.0059 18.5 5.0 39 27-68 72-110 (213)
394 PF09949 DUF2183: Uncharacteri 20.5 1.3E+02 0.0028 18.1 2.6 21 56-76 52-72 (100)
395 TIGR00612 ispG_gcpE 1-hydroxy- 20.4 1.1E+02 0.0024 23.0 2.6 64 44-107 260-333 (346)
396 cd06537 CIDE_N_B CIDE_N domain 20.4 1.4E+02 0.0031 17.4 2.6 23 82-104 30-52 (81)
No 1
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.6e-26 Score=146.44 Aligned_cols=105 Identities=34% Similarity=0.652 Sum_probs=97.2
Q ss_pred CeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC-CCeEEEEEeccCcHhHHHhcCCCCC
Q 032978 13 RVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY-PDVLFLSVDVDDVKDVASKLEVKAM 91 (130)
Q Consensus 13 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~~v~~~~vd~~~~~~~~~~~~v~~~ 91 (130)
....+.+..+|++.+.+ .+.|| +|+|||+||.+|+.+.|.|+++..+| ..+.|+.+|.+++++++.+|+|.++
T Consensus 43 ~~~~~~s~~~~~~~Vi~---S~~PV---lVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~av 116 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVIN---SDVPV---LVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAV 116 (150)
T ss_pred ccccccCHHHHHHHHHc---cCCCE---EEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeee
Confidence 35555688999998887 68999 99999999999999999999999998 4599999999999999999999999
Q ss_pred CEEEEeeCCeEEeeEecC-CHHHHHHHHHHHhh
Q 032978 92 PTFLLMREGAVVDKLVGA-NPEEIRKRIDSFVQ 123 (130)
Q Consensus 92 P~~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~ 123 (130)
||+++|+||+..++..|. +.+.|.++|++++.
T Consensus 117 PtvlvfknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 117 PTVLVFKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred eEEEEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 999999999999999999 88999999999875
No 2
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.4e-25 Score=137.78 Aligned_cols=100 Identities=46% Similarity=0.786 Sum_probs=89.5
Q ss_pred ChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCCCCCCEEEEee
Q 032978 19 SVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMR 98 (130)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~ 98 (130)
+..+++.....+...++++ ||+||++||++|+.+.|.+.+|+.+|+++.|+.+|+++..+++++++|+.+|||++|+
T Consensus 6 ~~~~~~~~~~~~~~~~kli---VvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k 82 (106)
T KOG0907|consen 6 TVSDLDLVLSAAEAGDKLV---VVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYK 82 (106)
T ss_pred ehhhHHHHHHHhhCCCCeE---EEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEE
Confidence 4455555555554467999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEeeEecCCHHHHHHHHHHH
Q 032978 99 EGAVVDKLVGANPEEIRKRIDSF 121 (130)
Q Consensus 99 ~g~~~~~~~g~~~~~l~~~i~~~ 121 (130)
+|+.+..+.|.+.+++.+.+..+
T Consensus 83 ~g~~~~~~vGa~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 83 GGEEVDEVVGANKAELEKKIAKH 105 (106)
T ss_pred CCEEEEEEecCCHHHHHHHHHhc
Confidence 99999999999999888887754
No 3
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.93 E-value=5.2e-25 Score=135.17 Aligned_cols=98 Identities=27% Similarity=0.476 Sum_probs=89.7
Q ss_pred ChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcH---hHHHhcCCCCCCEEE
Q 032978 19 SVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVK---DVASKLEVKAMPTFL 95 (130)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~---~~~~~~~v~~~P~~~ 95 (130)
+.++|++.+..+ .++++ +|.||++||++|+.+.|.+++++++++++.|+.||.+++. +++++|+|.++||++
T Consensus 2 ~~~~~~~~i~~~--~~k~v---vv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~ 76 (103)
T cd02985 2 SVEELDEALKKA--KGRLV---VLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFL 76 (103)
T ss_pred CHHHHHHHHHHc--CCCEE---EEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEE
Confidence 568899999875 68999 9999999999999999999999999988999999999874 789999999999999
Q ss_pred EeeCCeEEeeEecCCHHHHHHHHHHH
Q 032978 96 LMREGAVVDKLVGANPEEIRKRIDSF 121 (130)
Q Consensus 96 ~~~~g~~~~~~~g~~~~~l~~~i~~~ 121 (130)
+|++|+.+.++.|.++++|.+.+..+
T Consensus 77 ~~~~G~~v~~~~G~~~~~l~~~~~~~ 102 (103)
T cd02985 77 FYKDGEKIHEEEGIGPDELIGDVLYY 102 (103)
T ss_pred EEeCCeEEEEEeCCCHHHHHHHHHhc
Confidence 99999999999999999998887653
No 4
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.92 E-value=5.3e-24 Score=129.80 Aligned_cols=100 Identities=35% Similarity=0.673 Sum_probs=93.8
Q ss_pred EEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCC-CeEEEEEeccCcHhHHHhcCCCCCCE
Q 032978 15 VKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYP-DVLFLSVDVDDVKDVASKLEVKAMPT 93 (130)
Q Consensus 15 ~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~P~ 93 (130)
..+ +.++|++.+.+ .++++ +|+||++||++|+.+.|.++++++.++ ++.|+.+|+++++.++++|+|.++|+
T Consensus 2 ~~l-t~~~f~~~i~~---~~~~v---vv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt 74 (103)
T PF00085_consen 2 IVL-TDENFEKFINE---SDKPV---VVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPT 74 (103)
T ss_dssp EEE-STTTHHHHHTT---TSSEE---EEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSE
T ss_pred EEC-CHHHHHHHHHc---cCCCE---EEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCE
Confidence 456 88999999986 47899 999999999999999999999999996 79999999999999999999999999
Q ss_pred EEEeeCCeEEeeEecC-CHHHHHHHHHHH
Q 032978 94 FLLMREGAVVDKLVGA-NPEEIRKRIDSF 121 (130)
Q Consensus 94 ~~~~~~g~~~~~~~g~-~~~~l~~~i~~~ 121 (130)
+++|++|+...++.|. +.+.|.+||+++
T Consensus 75 ~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 75 IIFFKNGKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EEEEETTEEEEEEESSSSHHHHHHHHHHH
T ss_pred EEEEECCcEEEEEECCCCHHHHHHHHHcC
Confidence 9999999999999999 999999999875
No 5
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.92 E-value=1.2e-24 Score=134.75 Aligned_cols=85 Identities=18% Similarity=0.274 Sum_probs=78.2
Q ss_pred hhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCC-eEEEEEeccCcHhHHHhcCCCCCCEEEEee
Q 032978 20 VESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPD-VLFLSVDVDDVKDVASKLEVKAMPTFLLMR 98 (130)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~ 98 (130)
.++|+..+... .++++ ||.||++||++|+.+.|.+++++.++++ +.|+.||++++++++.+|+|.++||+++|+
T Consensus 2 ~~~~~~~i~~~--~~~~v---VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk 76 (114)
T cd02954 2 GWAVDQAILSE--EEKVV---VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFF 76 (114)
T ss_pred HHHHHHHHhcc--CCCEE---EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEE
Confidence 56788888754 67899 9999999999999999999999999976 799999999999999999999999999999
Q ss_pred CCeEEeeEecC
Q 032978 99 EGAVVDKLVGA 109 (130)
Q Consensus 99 ~g~~~~~~~g~ 109 (130)
+|+.+.+..|.
T Consensus 77 ~G~~v~~~~G~ 87 (114)
T cd02954 77 RNKHMKIDLGT 87 (114)
T ss_pred CCEEEEEEcCC
Confidence 99999888775
No 6
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.92 E-value=9.8e-24 Score=129.27 Aligned_cols=98 Identities=28% Similarity=0.510 Sum_probs=89.0
Q ss_pred EecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCC--CeEEEEEeccCcHhHHHhcCCCCCCE
Q 032978 16 KVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYP--DVLFLSVDVDDVKDVASKLEVKAMPT 93 (130)
Q Consensus 16 ~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~--~v~~~~vd~~~~~~~~~~~~v~~~P~ 93 (130)
.+.+.++|+..+. .++++ +|+||++||++|+.+.|.++++++.++ .+.|+.+|.+ .++++++|+|+++|+
T Consensus 3 ~i~~~~~~~~~i~----~~~~v---vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt 74 (102)
T cd02948 3 EINNQEEWEELLS----NKGLT---VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPT 74 (102)
T ss_pred EccCHHHHHHHHc----cCCeE---EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcE
Confidence 4568899999875 57899 999999999999999999999999984 4899999999 778999999999999
Q ss_pred EEEeeCCeEEeeEecCCHHHHHHHHHHH
Q 032978 94 FLLMREGAVVDKLVGANPEEIRKRIDSF 121 (130)
Q Consensus 94 ~~~~~~g~~~~~~~g~~~~~l~~~i~~~ 121 (130)
+++|++|+.+.+..|.+++.+.++|+++
T Consensus 75 ~~~~~~g~~~~~~~G~~~~~~~~~i~~~ 102 (102)
T cd02948 75 FLFYKNGELVAVIRGANAPLLNKTITEL 102 (102)
T ss_pred EEEEECCEEEEEEecCChHHHHHHHhhC
Confidence 9999999999999999999999998753
No 7
>PHA02278 thioredoxin-like protein
Probab=99.92 E-value=8.1e-24 Score=129.64 Aligned_cols=93 Identities=15% Similarity=0.260 Sum_probs=82.1
Q ss_pred cChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC-CCeEEEEEeccCc----HhHHHhcCCCCCC
Q 032978 18 DSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY-PDVLFLSVDVDDV----KDVASKLEVKAMP 92 (130)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~~v~~~~vd~~~~----~~~~~~~~v~~~P 92 (130)
++.++|.+.+. .++++ +|+||++||++|+.+.|.++++++++ .++.|+.+|++.+ ++++++|+|.++|
T Consensus 2 ~~~~~~~~~i~----~~~~v---vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iP 74 (103)
T PHA02278 2 NSLVDLNTAIR----QKKDV---IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTP 74 (103)
T ss_pred CCHHHHHHHHh----CCCcE---EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCcccc
Confidence 35678888885 67999 99999999999999999999999875 4578999999976 6899999999999
Q ss_pred EEEEeeCCeEEeeEecC-CHHHHHHH
Q 032978 93 TFLLMREGAVVDKLVGA-NPEEIRKR 117 (130)
Q Consensus 93 ~~~~~~~g~~~~~~~g~-~~~~l~~~ 117 (130)
|+++|++|+.+.+..|. +.+.|.++
T Consensus 75 T~i~fk~G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 75 VLIGYKDGQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred EEEEEECCEEEEEEeCCCCHHHHHhh
Confidence 99999999999999996 77777654
No 8
>PRK09381 trxA thioredoxin; Provisional
Probab=99.91 E-value=3.9e-23 Score=127.81 Aligned_cols=105 Identities=25% Similarity=0.554 Sum_probs=95.0
Q ss_pred CCCeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC-CCeEEEEEeccCcHhHHHhcCCC
Q 032978 11 KSRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY-PDVLFLSVDVDDVKDVASKLEVK 89 (130)
Q Consensus 11 ~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~~v~~~~vd~~~~~~~~~~~~v~ 89 (130)
+..+.++ +.++|.+.+.. .++++ +|+||++||++|+.+.|.++++++++ +++.|+.+|++..+.++++|+++
T Consensus 2 ~~~v~~~-~~~~~~~~v~~---~~~~v---vv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~ 74 (109)
T PRK09381 2 SDKIIHL-TDDSFDTDVLK---ADGAI---LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIR 74 (109)
T ss_pred CCcceee-ChhhHHHHHhc---CCCeE---EEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCC
Confidence 4568888 77899887754 57899 99999999999999999999999999 45999999999999999999999
Q ss_pred CCCEEEEeeCCeEEeeEecC-CHHHHHHHHHHHh
Q 032978 90 AMPTFLLMREGAVVDKLVGA-NPEEIRKRIDSFV 122 (130)
Q Consensus 90 ~~P~~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 122 (130)
++|++++|++|+.+.+..|. +.+.|..+|++.+
T Consensus 75 ~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 75 GIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred cCCEEEEEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 99999999999999988888 8899999998875
No 9
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.91 E-value=1.2e-23 Score=129.07 Aligned_cols=99 Identities=25% Similarity=0.380 Sum_probs=88.5
Q ss_pred CeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC-CCeEEEEEeccCcHhHHHhcCCCCC
Q 032978 13 RVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY-PDVLFLSVDVDDVKDVASKLEVKAM 91 (130)
Q Consensus 13 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~~v~~~~vd~~~~~~~~~~~~v~~~ 91 (130)
++.++ +.++|++.+.. .++++ +|.||++||++|+.+.|.++++++++ +.+.|+.+|++++++++++|+|+++
T Consensus 2 ~v~~l-~~~~f~~~i~~---~~~~v---~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~ 74 (104)
T cd03004 2 SVITL-TPEDFPELVLN---RKEPW---LVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAY 74 (104)
T ss_pred cceEc-CHHHHHHHHhc---CCCeE---EEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcc
Confidence 56778 88899998875 56789 99999999999999999999999998 4599999999999999999999999
Q ss_pred CEEEEeeCC-eEEeeEecC-C-HHHHHHHH
Q 032978 92 PTFLLMREG-AVVDKLVGA-N-PEEIRKRI 118 (130)
Q Consensus 92 P~~~~~~~g-~~~~~~~g~-~-~~~l~~~i 118 (130)
|++++|++| +....+.|. + .++|.+||
T Consensus 75 Pt~~~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 75 PTIRLYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred cEEEEEcCCCCCceEccCCCCCHHHHHhhC
Confidence 999999887 888888887 5 88888774
No 10
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.91 E-value=2.7e-23 Score=133.17 Aligned_cols=107 Identities=16% Similarity=0.261 Sum_probs=94.1
Q ss_pred eEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCC-eEEEEEeccCcHhHHHhcCCCCCC
Q 032978 14 VVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPD-VLFLSVDVDDVKDVASKLEVKAMP 92 (130)
Q Consensus 14 v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~P 92 (130)
+..+.+.++|++.+..+ .++++ ||.||++||++|+.+.|.|+++++++++ +.|+.||++++++++..|+|++.|
T Consensus 5 l~~l~s~~e~d~~I~~~--~~~lV---VvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~ 79 (142)
T PLN00410 5 LPHLHSGWAVDQAILAE--EERLV---VIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPC 79 (142)
T ss_pred HhhhCCHHHHHHHHHhc--CCCEE---EEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCC
Confidence 45678899999999866 78999 9999999999999999999999999976 888999999999999999999776
Q ss_pred EEE-EeeCCe-EEeeEec--------C-CHHHHHHHHHHHhhhh
Q 032978 93 TFL-LMREGA-VVDKLVG--------A-NPEEIRKRIDSFVQSI 125 (130)
Q Consensus 93 ~~~-~~~~g~-~~~~~~g--------~-~~~~l~~~i~~~~~~~ 125 (130)
+++ +|++|+ ++.+..| . +.++|.+.++.++..+
T Consensus 80 t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a 123 (142)
T PLN00410 80 TVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGA 123 (142)
T ss_pred cEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHHHH
Confidence 555 889998 8899888 3 6788888888876543
No 11
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=8.9e-24 Score=143.99 Aligned_cols=110 Identities=35% Similarity=0.686 Sum_probs=104.5
Q ss_pred CeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCCCCCC
Q 032978 13 RVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMP 92 (130)
Q Consensus 13 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P 92 (130)
+|+.++++..|+..+..+ ..+.+ +|.||+.||++|+.+.|.+..|+.+|++.+|++||+++++.++..+||.++|
T Consensus 2 ~Vi~v~~d~df~~~ls~a--g~k~v---~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amP 76 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSAA--GGKLV---VVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMP 76 (288)
T ss_pred CeEEecCcHHHHHhhhcc--CceEE---EEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCc
Confidence 688998999999999987 78899 9999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCeEEeeEecCCHHHHHHHHHHHhhhhcc
Q 032978 93 TFLLMREGAVVDKLVGANPEEIRKRIDSFVQSIRV 127 (130)
Q Consensus 93 ~~~~~~~g~~~~~~~g~~~~~l~~~i~~~~~~~~~ 127 (130)
||++|+||..++...|.++..|++.+.+++..++.
T Consensus 77 TFiff~ng~kid~~qGAd~~gLe~kv~~~~stsaa 111 (288)
T KOG0908|consen 77 TFIFFRNGVKIDQIQGADASGLEEKVAKYASTSAA 111 (288)
T ss_pred eEEEEecCeEeeeecCCCHHHHHHHHHHHhccCcc
Confidence 99999999999999999999999999999876654
No 12
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.91 E-value=2.1e-23 Score=129.75 Aligned_cols=104 Identities=16% Similarity=0.154 Sum_probs=89.6
Q ss_pred cCCCeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCC-CeEEEEEeccCcHhHH-HhcC
Q 032978 10 NKSRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYP-DVLFLSVDVDDVKDVA-SKLE 87 (130)
Q Consensus 10 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~-~v~~~~vd~~~~~~~~-~~~~ 87 (130)
..+++.++ +..+|++.+.-. ..++++ +|.||++||++|+.+.|.++++++.++ .+.|+.||++++..++ ++|+
T Consensus 7 ~~~~v~~l-~~~~f~~~~~v~-~~~~~v---lV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~ 81 (113)
T cd03006 7 QRSPVLDF-YKGQLDYAEELR-TDAEVS---LVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKH 81 (113)
T ss_pred CCCCeEEe-chhhhHHHHhcc-cCCCEE---EEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcC
Confidence 34678999 888898874311 167899 999999999999999999999999985 4999999999999998 5899
Q ss_pred CCCCCEEEEeeCCeEEeeEecC-CHHHHHHHH
Q 032978 88 VKAMPTFLLMREGAVVDKLVGA-NPEEIRKRI 118 (130)
Q Consensus 88 v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~i 118 (130)
|.++||+++|++|+....+.|. +.+.|..|+
T Consensus 82 I~~~PTl~lf~~g~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 82 FFYFPVIHLYYRSRGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred CcccCEEEEEECCccceEEeCCCCHHHHHhhC
Confidence 9999999999999988888888 888888763
No 13
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.91 E-value=2.1e-23 Score=127.43 Aligned_cols=97 Identities=19% Similarity=0.302 Sum_probs=87.0
Q ss_pred CeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCC-CeEEEEEeccCcHhHHHhcCCCCC
Q 032978 13 RVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYP-DVLFLSVDVDDVKDVASKLEVKAM 91 (130)
Q Consensus 13 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~ 91 (130)
.+..+ +.++|++.+. .++++ +|.||++||++|+.+.|.++++++.++ .+.|+.||+++++.++++|+|+++
T Consensus 2 ~~~~l-~~~~f~~~v~----~~~~~---~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~ 73 (101)
T cd03003 2 EIVTL-DRGDFDAAVN----SGEIW---FVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSY 73 (101)
T ss_pred CeEEc-CHhhHHHHhc----CCCeE---EEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCcc
Confidence 46778 7889998885 55888 999999999999999999999999995 589999999999999999999999
Q ss_pred CEEEEeeCCeEEeeEecC-CHHHHHHH
Q 032978 92 PTFLLMREGAVVDKLVGA-NPEEIRKR 117 (130)
Q Consensus 92 P~~~~~~~g~~~~~~~g~-~~~~l~~~ 117 (130)
||+++|++|+....+.|. +.+.|.+|
T Consensus 74 Pt~~~~~~g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 74 PSLYVFPSGMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred CEEEEEcCCCCcccCCCCCCHHHHHhh
Confidence 999999999988888887 77877765
No 14
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.90 E-value=5.4e-23 Score=124.41 Aligned_cols=93 Identities=32% Similarity=0.550 Sum_probs=84.1
Q ss_pred hHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCC-CeEEEEEeccCcHhHHHhcCCCCCCEEEEeeCC
Q 032978 22 SWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYP-DVLFLSVDVDDVKDVASKLEVKAMPTFLLMREG 100 (130)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g 100 (130)
+|++.+... .++++ +|+||++||++|+.+.|.++++++.++ .+.++.+|++.++.++++|++.++|++++|++|
T Consensus 2 ~f~~~i~~~--~~~~v---lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g 76 (96)
T cd02956 2 NFQQVLQES--TQVPV---VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAG 76 (96)
T ss_pred ChHHHHHhc--CCCeE---EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCC
Confidence 567777654 57899 999999999999999999999999984 589999999999999999999999999999999
Q ss_pred eEEeeEecC-CHHHHHHHHH
Q 032978 101 AVVDKLVGA-NPEEIRKRID 119 (130)
Q Consensus 101 ~~~~~~~g~-~~~~l~~~i~ 119 (130)
+.+..+.|. +.+.|..+|+
T Consensus 77 ~~~~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 77 QPVDGFQGAQPEEQLRQMLD 96 (96)
T ss_pred EEeeeecCCCCHHHHHHHhC
Confidence 999888888 7899988874
No 15
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.2e-23 Score=145.74 Aligned_cols=110 Identities=28% Similarity=0.517 Sum_probs=99.4
Q ss_pred cCCCeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC-CCeEEEEEeccCcHhHHHhcCC
Q 032978 10 NKSRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY-PDVLFLSVDVDDVKDVASKLEV 88 (130)
Q Consensus 10 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~~v~~~~vd~~~~~~~~~~~~v 88 (130)
....+.++ |..+|++.+.... ..+|| +|+||+|||++|+.+.|.|++++..| +.+.+++||+++++.++.+|||
T Consensus 21 ~a~~I~dv-T~anfe~~V~~~S-~~~PV---lV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgi 95 (304)
T COG3118 21 AAPGIKDV-TEANFEQEVIQSS-REVPV---LVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGV 95 (304)
T ss_pred ccccceec-hHhHHHHHHHHHc-cCCCe---EEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCc
Confidence 34458889 8888988777763 56699 99999999999999999999999999 4599999999999999999999
Q ss_pred CCCCEEEEeeCCeEEeeEecCC-HHHHHHHHHHHhhh
Q 032978 89 KAMPTFLLMREGAVVDKLVGAN-PEEIRKRIDSFVQS 124 (130)
Q Consensus 89 ~~~P~~~~~~~g~~~~~~~g~~-~~~l~~~i~~~~~~ 124 (130)
+++|+++.|++|+.++.+.|.. .+.+.+|++++++.
T Consensus 96 qsIPtV~af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 96 QSIPTVYAFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred CcCCeEEEeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 9999999999999999999995 56999999999876
No 16
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.90 E-value=7.6e-23 Score=128.19 Aligned_cols=103 Identities=16% Similarity=0.250 Sum_probs=92.8
Q ss_pred CCeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChh--hh--hhhHHHHHHHHhC--C-CeEEEEEeccCcHhHHH
Q 032978 12 SRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMP--SV--AMNPLFEELASAY--P-DVLFLSVDVDDVKDVAS 84 (130)
Q Consensus 12 ~~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~--C~--~~~~~l~~l~~~~--~-~v~~~~vd~~~~~~~~~ 84 (130)
..+..+ +.++|++.+.. .+.++ |++||++||++ |+ .+.|.+.+++.++ + ++.|+.||+++++++++
T Consensus 9 ~~v~~l-t~~nF~~~v~~---~~~~v---vv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~ 81 (120)
T cd03065 9 DRVIDL-NEKNYKQVLKK---YDVLC---LLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAK 81 (120)
T ss_pred cceeeC-ChhhHHHHHHh---CCceE---EEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHH
Confidence 467778 78999999987 56799 99999999976 99 8899999999887 3 69999999999999999
Q ss_pred hcCCCCCCEEEEeeCCeEEeeEecC-CHHHHHHHHHHHh
Q 032978 85 KLEVKAMPTFLLMREGAVVDKLVGA-NPEEIRKRIDSFV 122 (130)
Q Consensus 85 ~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 122 (130)
+|+|+++||+++|++|+.+. +.|. +.+.|.+||+++.
T Consensus 82 ~~~I~~iPTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 82 KLGLDEEDSIYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred HcCCccccEEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 99999999999999999888 7787 8999999999874
No 17
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.90 E-value=9.1e-23 Score=127.12 Aligned_cols=92 Identities=25% Similarity=0.386 Sum_probs=85.2
Q ss_pred CCCeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCCCC
Q 032978 11 KSRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKA 90 (130)
Q Consensus 11 ~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~ 90 (130)
.+.+..|++.++|.+.+. +++++ +|+||++||++|+.+.|.+++++++++++.|+.||.+++++++++|+|.+
T Consensus 3 ~g~v~~i~~~~~~~~~i~----~~~~v---vV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~ 75 (113)
T cd02989 3 HGKYREVSDEKEFFEIVK----SSERV---VCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKV 75 (113)
T ss_pred CCCeEEeCCHHHHHHHHh----CCCcE---EEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCcc
Confidence 467889988899999987 45789 99999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeeCCeEEeeEecC
Q 032978 91 MPTFLLMREGAVVDKLVGA 109 (130)
Q Consensus 91 ~P~~~~~~~g~~~~~~~g~ 109 (130)
+||+++|++|+.+.++.|.
T Consensus 76 vPt~l~fk~G~~v~~~~g~ 94 (113)
T cd02989 76 LPTVILFKNGKTVDRIVGF 94 (113)
T ss_pred CCEEEEEECCEEEEEEECc
Confidence 9999999999999887765
No 18
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.90 E-value=4.9e-23 Score=125.76 Aligned_cols=91 Identities=21% Similarity=0.321 Sum_probs=80.8
Q ss_pred hHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEecc-CcHhHHHhcCCCCCCEEEEeeCC
Q 032978 22 SWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVD-DVKDVASKLEVKAMPTFLLMREG 100 (130)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~-~~~~~~~~~~v~~~P~~~~~~~g 100 (130)
.+.+.+... +++++ +|.||++||++|+.+.|.|+++++.++++.++.||.+ +++.++++|+|.++||+++|++|
T Consensus 8 ~~~~~~~~~--~g~~v---lV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g 82 (100)
T cd02999 8 IALDLMAFN--REDYT---AVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST 82 (100)
T ss_pred HHHHHHHhc--CCCEE---EEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC
Confidence 445555544 89999 9999999999999999999999999988999999999 88999999999999999999988
Q ss_pred eEEeeEecC-CHHHHHHHH
Q 032978 101 AVVDKLVGA-NPEEIRKRI 118 (130)
Q Consensus 101 ~~~~~~~g~-~~~~l~~~i 118 (130)
...++.|. +.+.|.+||
T Consensus 83 -~~~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 83 -PRVRYNGTRTLDSLAAFY 100 (100)
T ss_pred -ceeEecCCCCHHHHHhhC
Confidence 77788887 888888775
No 19
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.90 E-value=1.9e-22 Score=122.10 Aligned_cols=95 Identities=39% Similarity=0.805 Sum_probs=87.2
Q ss_pred ChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHh-CCCeEEEEEeccCcHhHHHhcCCCCCCEEEEe
Q 032978 19 SVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASA-YPDVLFLSVDVDDVKDVASKLEVKAMPTFLLM 97 (130)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~-~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~ 97 (130)
+.++|++.+..+ .++++ +|.||++||++|+.+.+.|++++++ ++++.++.+|.++.++++++|++.++|++++|
T Consensus 1 s~~~~~~~~~~~--~~~~v---~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 75 (97)
T cd02984 1 SEEEFEELLKSD--ASKLL---VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFF 75 (97)
T ss_pred CHHHHHHHHhhC--CCCEE---EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEE
Confidence 457888888875 47899 9999999999999999999999999 47899999999999999999999999999999
Q ss_pred eCCeEEeeEecCCHHHHHHHH
Q 032978 98 REGAVVDKLVGANPEEIRKRI 118 (130)
Q Consensus 98 ~~g~~~~~~~g~~~~~l~~~i 118 (130)
++|+.+.+..|.+.++|.+.|
T Consensus 76 ~~g~~~~~~~g~~~~~l~~~~ 96 (97)
T cd02984 76 RNGTIVDRVSGADPKELAKKV 96 (97)
T ss_pred ECCEEEEEEeCCCHHHHHHhh
Confidence 999999999999999888876
No 20
>PRK10996 thioredoxin 2; Provisional
Probab=99.90 E-value=3.5e-22 Score=128.69 Aligned_cols=104 Identities=25% Similarity=0.593 Sum_probs=93.1
Q ss_pred CCCeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC-CCeEEEEEeccCcHhHHHhcCCC
Q 032978 11 KSRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY-PDVLFLSVDVDDVKDVASKLEVK 89 (130)
Q Consensus 11 ~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~~v~~~~vd~~~~~~~~~~~~v~ 89 (130)
.+.+..+ +..+|++.+. .++++ +|+||++||++|+.+.+.++++++++ +++.|+.+|.+++++++++|+|.
T Consensus 34 ~~~~i~~-~~~~~~~~i~----~~k~v---vv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~ 105 (139)
T PRK10996 34 DGEVINA-TGETLDKLLQ----DDLPV---VIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIR 105 (139)
T ss_pred CCCCEEc-CHHHHHHHHh----CCCeE---EEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCC
Confidence 3456666 7888988775 67999 99999999999999999999999888 46999999999999999999999
Q ss_pred CCCEEEEeeCCeEEeeEecC-CHHHHHHHHHHHh
Q 032978 90 AMPTFLLMREGAVVDKLVGA-NPEEIRKRIDSFV 122 (130)
Q Consensus 90 ~~P~~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 122 (130)
++|++++|++|+.+..+.|. +.+.|.+|+++++
T Consensus 106 ~~Ptlii~~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 106 SIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred ccCEEEEEECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 99999999999999999888 8899999998763
No 21
>PTZ00051 thioredoxin; Provisional
Probab=99.90 E-value=2.6e-22 Score=121.76 Aligned_cols=97 Identities=39% Similarity=0.710 Sum_probs=88.7
Q ss_pred CeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCCCCCC
Q 032978 13 RVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMP 92 (130)
Q Consensus 13 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P 92 (130)
.+.++++.+++.+.+. .++++ +|+||++||++|+.+.+.+++++++++++.|+.+|.+++..++++|++.++|
T Consensus 1 ~v~~i~~~~~~~~~~~----~~~~v---li~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P 73 (98)
T PTZ00051 1 MVHIVTSQAEFESTLS----QNELV---IVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMP 73 (98)
T ss_pred CeEEecCHHHHHHHHh----cCCeE---EEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceee
Confidence 3567888889988876 56899 9999999999999999999999999988999999999999999999999999
Q ss_pred EEEEeeCCeEEeeEecCCHHHHHH
Q 032978 93 TFLLMREGAVVDKLVGANPEEIRK 116 (130)
Q Consensus 93 ~~~~~~~g~~~~~~~g~~~~~l~~ 116 (130)
++++|++|+.+.++.|...++|.+
T Consensus 74 t~~~~~~g~~~~~~~G~~~~~~~~ 97 (98)
T PTZ00051 74 TFKVFKNGSVVDTLLGANDEALKQ 97 (98)
T ss_pred EEEEEeCCeEEEEEeCCCHHHhhc
Confidence 999999999999999998877753
No 22
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.89 E-value=1.9e-22 Score=124.58 Aligned_cols=99 Identities=28% Similarity=0.519 Sum_probs=85.5
Q ss_pred CCeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC----C---CeEEEEEeccCcHhHHH
Q 032978 12 SRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY----P---DVLFLSVDVDDVKDVAS 84 (130)
Q Consensus 12 ~~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~----~---~v~~~~vd~~~~~~~~~ 84 (130)
+.+.++ +.++|++.+. .++++ +|.||++||++|+++.|.++++++.+ + .+.|+.+|+++++++++
T Consensus 1 ~~v~~l-~~~~f~~~i~----~~~~v---lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~ 72 (108)
T cd02996 1 SEIVSL-TSGNIDDILQ----SAELV---LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIAD 72 (108)
T ss_pred CceEEc-CHhhHHHHHh----cCCEE---EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHH
Confidence 357788 8889998875 56789 99999999999999999999998764 2 48999999999999999
Q ss_pred hcCCCCCCEEEEeeCCeE-EeeEecC-CHHHHHHHH
Q 032978 85 KLEVKAMPTFLLMREGAV-VDKLVGA-NPEEIRKRI 118 (130)
Q Consensus 85 ~~~v~~~P~~~~~~~g~~-~~~~~g~-~~~~l~~~i 118 (130)
+|+|+++|++++|++|+. ...+.|. +.+.|.+||
T Consensus 73 ~~~v~~~Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 73 RYRINKYPTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred hCCCCcCCEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 999999999999999984 4666677 788888775
No 23
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.89 E-value=1.9e-22 Score=125.28 Aligned_cols=99 Identities=15% Similarity=0.340 Sum_probs=86.4
Q ss_pred ChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCC--CeEEEEEeccCcHhHHHhcCCCCCCEEEE
Q 032978 19 SVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYP--DVLFLSVDVDDVKDVASKLEVKAMPTFLL 96 (130)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~--~v~~~~vd~~~~~~~~~~~~v~~~P~~~~ 96 (130)
+..+|.+.+... ..++++ +|.||++||++|+.+.|.+++++++++ ++.|+.||++..+.++++|+|+++||+++
T Consensus 10 ~~~~~~~~~~~~-~~~~~v---lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i 85 (111)
T cd02963 10 TFSQYENEIVPK-SFKKPY---LIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVG 85 (111)
T ss_pred eHHHHHHhhccc-cCCCeE---EEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEE
Confidence 567776544321 167999 999999999999999999999999984 59999999999999999999999999999
Q ss_pred eeCCeEEeeEecC-CHHHHHHHHHHH
Q 032978 97 MREGAVVDKLVGA-NPEEIRKRIDSF 121 (130)
Q Consensus 97 ~~~g~~~~~~~g~-~~~~l~~~i~~~ 121 (130)
|++|+.+.+..|. +.+.|.++|+++
T Consensus 86 ~~~g~~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 86 IINGQVTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred EECCEEEEEecCCCCHHHHHHHHhcC
Confidence 9999999998887 889999998763
No 24
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.89 E-value=2.6e-22 Score=123.60 Aligned_cols=97 Identities=11% Similarity=0.184 Sum_probs=83.9
Q ss_pred hhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCC-eEEEEEeccCcHhHHHhcCCCCCCEEEEee
Q 032978 20 VESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPD-VLFLSVDVDDVKDVASKLEVKAMPTFLLMR 98 (130)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~ 98 (130)
.++|++.+..+ .++++ ||.|+++||++|+.+.|.|+++++++++ +.|+.||+++.++++++|+|++.||+++|+
T Consensus 2 ~~~~d~~i~~~--~~klV---VVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffk 76 (114)
T cd02986 2 KKEVDQAIKST--AEKVL---VLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFF 76 (114)
T ss_pred HHHHHHHHHhc--CCCEE---EEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEE
Confidence 46788888887 78999 9999999999999999999999999988 999999999999999999999999999999
Q ss_pred CCeEEeeEecC-----------CHHHHHHHHHHH
Q 032978 99 EGAVVDKLVGA-----------NPEEIRKRIDSF 121 (130)
Q Consensus 99 ~g~~~~~~~g~-----------~~~~l~~~i~~~ 121 (130)
+|+-+....|. +.+++.+.++..
T Consensus 77 ngkh~~~d~gt~~~~k~~~~~~~k~~~idi~e~~ 110 (114)
T cd02986 77 NGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 110 (114)
T ss_pred CCcEEEEecCCCCCcEEEEEcCchhHHHHHHHHH
Confidence 99877543333 346666666543
No 25
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.89 E-value=5.9e-22 Score=131.96 Aligned_cols=96 Identities=22% Similarity=0.374 Sum_probs=85.6
Q ss_pred hcCCCeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCC
Q 032978 9 QNKSRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEV 88 (130)
Q Consensus 9 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v 88 (130)
...+.+.+|++.++|.+.+..+. .+.++ ||.||++||++|+.+.|.|+.|+.+|+.+.|+.||+++. .++.+|+|
T Consensus 59 ~~~g~v~ei~~~~~f~~~v~~~~-~~~~V---VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v 133 (175)
T cd02987 59 RRFGKVYELDSGEQFLDAIDKEG-KDTTV---VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDT 133 (175)
T ss_pred CCCCeEEEcCCHHHHHHHHHhcC-CCcEE---EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCC
Confidence 34678999966599999887642 34589 999999999999999999999999999999999999988 89999999
Q ss_pred CCCCEEEEeeCCeEEeeEecC
Q 032978 89 KAMPTFLLMREGAVVDKLVGA 109 (130)
Q Consensus 89 ~~~P~~~~~~~g~~~~~~~g~ 109 (130)
.++||+++|++|+.+.++.|.
T Consensus 134 ~~vPTlllyk~G~~v~~~vG~ 154 (175)
T cd02987 134 DALPALLVYKGGELIGNFVRV 154 (175)
T ss_pred CCCCEEEEEECCEEEEEEech
Confidence 999999999999999888776
No 26
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.89 E-value=6.7e-22 Score=120.65 Aligned_cols=98 Identities=24% Similarity=0.478 Sum_probs=84.9
Q ss_pred CCeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCC--CeEEEEEeccCcHhHHHhcCCC
Q 032978 12 SRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYP--DVLFLSVDVDDVKDVASKLEVK 89 (130)
Q Consensus 12 ~~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~--~v~~~~vd~~~~~~~~~~~~v~ 89 (130)
+.+.++ +.++|++.+. +. + +|.||++||++|+.+.|.++++++.+. ++.|+.+|+++++.++++|+|.
T Consensus 1 ~~v~~l-~~~~f~~~~~-----~~-~---lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~ 70 (101)
T cd02994 1 SNVVEL-TDSNWTLVLE-----GE-W---MIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVT 70 (101)
T ss_pred CceEEc-ChhhHHHHhC-----CC-E---EEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCc
Confidence 357888 7889998663 33 7 899999999999999999999998773 5999999999999999999999
Q ss_pred CCCEEEEeeCCeEEeeEecC-CHHHHHHHHHH
Q 032978 90 AMPTFLLMREGAVVDKLVGA-NPEEIRKRIDS 120 (130)
Q Consensus 90 ~~P~~~~~~~g~~~~~~~g~-~~~~l~~~i~~ 120 (130)
++||++++++|+. ..+.|. +.+.|..++++
T Consensus 71 ~~Pt~~~~~~g~~-~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 71 ALPTIYHAKDGVF-RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred ccCEEEEeCCCCE-EEecCCCCHHHHHHHHhC
Confidence 9999999999985 667777 88999988863
No 27
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.89 E-value=4.5e-22 Score=123.98 Aligned_cols=93 Identities=28% Similarity=0.508 Sum_probs=83.7
Q ss_pred CCCeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCCCC
Q 032978 11 KSRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKA 90 (130)
Q Consensus 11 ~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~ 90 (130)
.+.+.++ +.++|.+.+.... .++++ +|+||++||++|+.+.|.+++++++++++.|+.||++++ .++++|+|.+
T Consensus 3 ~g~v~~i-~~~~f~~~i~~~~-~~~~v---vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~~ 76 (113)
T cd02957 3 FGEVREI-SSKEFLEEVTKAS-KGTRV---VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIKV 76 (113)
T ss_pred CceEEEE-cHHHHHHHHHccC-CCCEE---EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCCc
Confidence 4568889 5589999887531 25899 999999999999999999999999999999999999999 9999999999
Q ss_pred CCEEEEeeCCeEEeeEecC
Q 032978 91 MPTFLLMREGAVVDKLVGA 109 (130)
Q Consensus 91 ~P~~~~~~~g~~~~~~~g~ 109 (130)
+||+++|++|+.+.+..|.
T Consensus 77 ~Pt~~~f~~G~~v~~~~G~ 95 (113)
T cd02957 77 LPTLLVYKNGELIDNIVGF 95 (113)
T ss_pred CCEEEEEECCEEEEEEecH
Confidence 9999999999999998886
No 28
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.88 E-value=1e-21 Score=121.19 Aligned_cols=100 Identities=22% Similarity=0.384 Sum_probs=86.4
Q ss_pred CeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCC-CeEEEEEeccC--cHhHHHhcCCC
Q 032978 13 RVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYP-DVLFLSVDVDD--VKDVASKLEVK 89 (130)
Q Consensus 13 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~-~v~~~~vd~~~--~~~~~~~~~v~ 89 (130)
++.++ +.++|++.+.. .++++ +|.||++||++|+.+.|.++++++.+. .+.|+.+|++. ++.++++|+++
T Consensus 1 ~v~~l-~~~~~~~~i~~---~~~~~---lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~ 73 (109)
T cd03002 1 PVYEL-TPKNFDKVVHN---TNYTT---LVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQ 73 (109)
T ss_pred CeEEc-chhhHHHHHhc---CCCeE---EEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCC
Confidence 35677 78899998876 57889 999999999999999999999999984 58999999998 88999999999
Q ss_pred CCCEEEEeeCCe-----EEeeEecC-CHHHHHHHHH
Q 032978 90 AMPTFLLMREGA-----VVDKLVGA-NPEEIRKRID 119 (130)
Q Consensus 90 ~~P~~~~~~~g~-----~~~~~~g~-~~~~l~~~i~ 119 (130)
++|++++|++|+ ....+.|. +.+.|.+||.
T Consensus 74 ~~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 74 GFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred cCCEEEEEeCCCcccccccccccCccCHHHHHHHhC
Confidence 999999998775 34556677 8888988873
No 29
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.88 E-value=1.4e-21 Score=120.28 Aligned_cols=95 Identities=20% Similarity=0.304 Sum_probs=84.9
Q ss_pred CeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCC--ChhhhhhhHHHHHHHHhCCC-eEEEEEeccCcHhHHHhcCCC
Q 032978 13 RVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIW--CMPSVAMNPLFEELASAYPD-VLFLSVDVDDVKDVASKLEVK 89 (130)
Q Consensus 13 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~--C~~C~~~~~~l~~l~~~~~~-v~~~~vd~~~~~~~~~~~~v~ 89 (130)
+..++ +..+|++.++ .+..+ ||.||++| |++|+.+.|.|++++++|++ +.|+.+|++++++++.+|+|+
T Consensus 11 ~~~~~-~~~~~~~~~~----~~~~~---v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~ 82 (111)
T cd02965 11 GWPRV-DAATLDDWLA----AGGDL---VLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVL 82 (111)
T ss_pred CCccc-ccccHHHHHh----CCCCE---EEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCC
Confidence 45567 7888987773 67888 99999997 99999999999999999965 889999999999999999999
Q ss_pred CCCEEEEeeCCeEEeeEecC-CHHHHH
Q 032978 90 AMPTFLLMREGAVVDKLVGA-NPEEIR 115 (130)
Q Consensus 90 ~~P~~~~~~~g~~~~~~~g~-~~~~l~ 115 (130)
++||+++|++|+.+....|. +.+++.
T Consensus 83 sIPTli~fkdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 83 RTPALLFFRDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred cCCEEEEEECCEEEEEEeCccCHHHHh
Confidence 99999999999999999998 666654
No 30
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.88 E-value=1.5e-21 Score=119.00 Aligned_cols=96 Identities=26% Similarity=0.593 Sum_probs=84.8
Q ss_pred eEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCC----CeEEEEEeccCcHhHHHhcCCC
Q 032978 14 VVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYP----DVLFLSVDVDDVKDVASKLEVK 89 (130)
Q Consensus 14 v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~----~v~~~~vd~~~~~~~~~~~~v~ 89 (130)
+..+ +.++|++.+. .+ .+ +|.||++||++|+.+.|.++++++++. ++.|+.+|+++++.++++|++.
T Consensus 2 ~~~l-~~~~f~~~~~----~~-~~---lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~ 72 (102)
T cd03005 2 VLEL-TEDNFDHHIA----EG-NH---FVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVR 72 (102)
T ss_pred eeEC-CHHHHHHHhh----cC-CE---EEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCC
Confidence 5677 7788998885 33 48 999999999999999999999999883 5999999999999999999999
Q ss_pred CCCEEEEeeCCeEEeeEecC-CHHHHHHHH
Q 032978 90 AMPTFLLMREGAVVDKLVGA-NPEEIRKRI 118 (130)
Q Consensus 90 ~~P~~~~~~~g~~~~~~~g~-~~~~l~~~i 118 (130)
++|++++|++|+.+..+.|. +.+.|.+||
T Consensus 73 ~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 73 GYPTLLLFKDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred cCCEEEEEeCCCeeeEeeCCCCHHHHHhhC
Confidence 99999999999988888888 788887764
No 31
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.88 E-value=4.3e-21 Score=131.89 Aligned_cols=111 Identities=23% Similarity=0.365 Sum_probs=97.5
Q ss_pred CCCeEEecChhhHHHHHHHhh-cCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCC-CeEEEEEeccCcHhHHHhcCC
Q 032978 11 KSRVVKVDSVESWETFVSQAN-NQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYP-DVLFLSVDVDDVKDVASKLEV 88 (130)
Q Consensus 11 ~~~v~~i~~~~~~~~~~~~~~-~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~-~v~~~~vd~~~~~~~~~~~~v 88 (130)
.+.+.++ +.++|++.+.... ..++++ +|+||++||++|+.+.|.+++++++++ .+.|+.+|++++++++++|+|
T Consensus 29 ~~~Vv~L-t~~nF~~~v~~~~~~~~~~v---lV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I 104 (224)
T PTZ00443 29 ANALVLL-NDKNFEKLTQASTGATTGPW---FVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAI 104 (224)
T ss_pred CCCcEEC-CHHHHHHHHhhhcccCCCCE---EEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCC
Confidence 4568888 8899999886541 135788 999999999999999999999999995 499999999999999999999
Q ss_pred CCCCEEEEeeCCeEEeeEecC-CHHHHHHHHHHHhhhh
Q 032978 89 KAMPTFLLMREGAVVDKLVGA-NPEEIRKRIDSFVQSI 125 (130)
Q Consensus 89 ~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~~ 125 (130)
+++||+++|++|+.+....|. +.++|.+|+.+.....
T Consensus 105 ~~~PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~~~ 142 (224)
T PTZ00443 105 KGYPTLLLFDKGKMYQYEGGDRSTEKLAAFALGDFKKA 142 (224)
T ss_pred CcCCEEEEEECCEEEEeeCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999888886 8999999999886543
No 32
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.87 E-value=4.4e-21 Score=116.39 Aligned_cols=98 Identities=33% Similarity=0.657 Sum_probs=88.0
Q ss_pred ChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCC-CeEEEEEeccCcHhHHHhcCCCCCCEEEEe
Q 032978 19 SVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYP-DVLFLSVDVDDVKDVASKLEVKAMPTFLLM 97 (130)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~ 97 (130)
+.+++.+.+.. .++++ +|+||++||++|+.+.+.++++++.++ ++.|+.+|+++++.++++|++.++|++++|
T Consensus 2 ~~~~~~~~~~~---~~~~v---vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~ 75 (101)
T TIGR01068 2 TDANFDETIAS---SDKPV---LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLF 75 (101)
T ss_pred CHHHHHHHHhh---cCCcE---EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEE
Confidence 56778887764 46799 999999999999999999999998885 699999999999999999999999999999
Q ss_pred eCCeEEeeEecC-CHHHHHHHHHHHh
Q 032978 98 REGAVVDKLVGA-NPEEIRKRIDSFV 122 (130)
Q Consensus 98 ~~g~~~~~~~g~-~~~~l~~~i~~~~ 122 (130)
++|+......|. +.+.+.+++++.+
T Consensus 76 ~~g~~~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 76 KNGKEVDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred eCCcEeeeecCCCCHHHHHHHHHhhC
Confidence 999999888888 7799999998753
No 33
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.87 E-value=2.5e-21 Score=126.03 Aligned_cols=93 Identities=23% Similarity=0.408 Sum_probs=83.9
Q ss_pred CCCeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCC--CeEEEEEeccCcHhHHHhcCC
Q 032978 11 KSRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYP--DVLFLSVDVDDVKDVASKLEV 88 (130)
Q Consensus 11 ~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~--~v~~~~vd~~~~~~~~~~~~v 88 (130)
...+.++ +.++|++.+... .++++ +|+||++||++|+.+.|.+++++++++ ++.|+.||++++++++++|+|
T Consensus 27 ~~~v~~l-~~~~f~~~l~~~--~~~~v---vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V 100 (152)
T cd02962 27 PEHIKYF-TPKTLEEELERD--KRVTW---LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRV 100 (152)
T ss_pred CCccEEc-CHHHHHHHHHhc--CCCEE---EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCc
Confidence 4577888 788899888654 56789 999999999999999999999999984 599999999999999999999
Q ss_pred CC------CCEEEEeeCCeEEeeEecC
Q 032978 89 KA------MPTFLLMREGAVVDKLVGA 109 (130)
Q Consensus 89 ~~------~P~~~~~~~g~~~~~~~g~ 109 (130)
.+ +||+++|++|+++.+..|.
T Consensus 101 ~~~~~v~~~PT~ilf~~Gk~v~r~~G~ 127 (152)
T cd02962 101 STSPLSKQLPTIILFQGGKEVARRPYY 127 (152)
T ss_pred eecCCcCCCCEEEEEECCEEEEEEecc
Confidence 88 9999999999999999884
No 34
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.87 E-value=3.8e-21 Score=124.23 Aligned_cols=101 Identities=26% Similarity=0.463 Sum_probs=86.6
Q ss_pred hhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCC-CeEEEEEeccCc--HhHHHhcCCCCCCEEEEe
Q 032978 21 ESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYP-DVLFLSVDVDDV--KDVASKLEVKAMPTFLLM 97 (130)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~-~v~~~~vd~~~~--~~~~~~~~v~~~P~~~~~ 97 (130)
.+|+..+. .++++ ||+||++||++|+.+.|.+.++++.+. .+.|+.||++.. ..++++|+|.++|++++|
T Consensus 11 ~~~~~a~~----~gk~v---vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~ 83 (142)
T cd02950 11 TPPEVALS----NGKPT---LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFL 83 (142)
T ss_pred CCHHHHHh----CCCEE---EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEE
Confidence 45555554 78999 999999999999999999999999984 588888888754 578999999999999999
Q ss_pred -eCCeEEeeEecC-CHHHHHHHHHHHhhhhccc
Q 032978 98 -REGAVVDKLVGA-NPEEIRKRIDSFVQSIRVY 128 (130)
Q Consensus 98 -~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~~~ 128 (130)
++|+.+.++.|. ..++|.++|++++...+.+
T Consensus 84 ~~~G~~v~~~~G~~~~~~l~~~l~~l~~~~~~~ 116 (142)
T cd02950 84 DREGNEEGQSIGLQPKQVLAQNLDALVAGEPLP 116 (142)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHHHHHcCCCCC
Confidence 589999999998 6889999999998765443
No 35
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.86 E-value=9.7e-21 Score=115.74 Aligned_cols=97 Identities=28% Similarity=0.484 Sum_probs=85.2
Q ss_pred eEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCC---CeEEEEEeccC--cHhHHHhcCC
Q 032978 14 VVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYP---DVLFLSVDVDD--VKDVASKLEV 88 (130)
Q Consensus 14 v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~---~v~~~~vd~~~--~~~~~~~~~v 88 (130)
+..+ +..+++..+. +++++ +|.||++||++|+++.+.++.+++.++ .+.++.+|++. ++.++++|++
T Consensus 2 ~~~l-~~~~~~~~~~----~~~~~---~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i 73 (104)
T cd02997 2 VVHL-TDEDFRKFLK----KEKHV---LVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNV 73 (104)
T ss_pred eEEe-chHhHHHHHh----hCCCE---EEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCC
Confidence 5667 6778988886 45689 999999999999999999999998773 48899999998 8999999999
Q ss_pred CCCCEEEEeeCCeEEeeEecC-CHHHHHHHH
Q 032978 89 KAMPTFLLMREGAVVDKLVGA-NPEEIRKRI 118 (130)
Q Consensus 89 ~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~i 118 (130)
+++|++++|++|+.+..+.|. +.+.+.+|+
T Consensus 74 ~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 74 KGFPTFKYFENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred ccccEEEEEeCCCeeEEeCCCCCHHHHHhhC
Confidence 999999999999988888887 888888764
No 36
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.86 E-value=1.3e-20 Score=114.99 Aligned_cols=98 Identities=22% Similarity=0.323 Sum_probs=84.4
Q ss_pred eEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC-CCeEEEEEeccCcHhHHHhcCCCCCC
Q 032978 14 VVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY-PDVLFLSVDVDDVKDVASKLEVKAMP 92 (130)
Q Consensus 14 v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~~v~~~~vd~~~~~~~~~~~~v~~~P 92 (130)
+.++ +..++++.+.. .++++ +|.||++||++|+.+.|.+.++++++ +.+.|+.+|++++++++++|+|+++|
T Consensus 2 v~~l-~~~~~~~~i~~---~~~~v---lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P 74 (103)
T cd03001 2 VVEL-TDSNFDKKVLN---SDDVW---LVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFP 74 (103)
T ss_pred eEEc-CHHhHHHHHhc---CCCcE---EEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccC
Confidence 5667 78889888875 45678 99999999999999999999999988 46999999999999999999999999
Q ss_pred EEEEeeCC-eEEeeEecC-CHHHHHHHH
Q 032978 93 TFLLMREG-AVVDKLVGA-NPEEIRKRI 118 (130)
Q Consensus 93 ~~~~~~~g-~~~~~~~g~-~~~~l~~~i 118 (130)
++++|++| +....+.|. +.+.|.+|+
T Consensus 75 ~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 75 TIKVFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred EEEEECCCCcceeecCCCCCHHHHHHHh
Confidence 99999888 444455565 888888886
No 37
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.85 E-value=1.4e-20 Score=114.52 Aligned_cols=96 Identities=26% Similarity=0.449 Sum_probs=85.1
Q ss_pred ChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCC---CeEEEEEeccCcHhHHHhcCCCCCCEEE
Q 032978 19 SVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYP---DVLFLSVDVDDVKDVASKLEVKAMPTFL 95 (130)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~---~v~~~~vd~~~~~~~~~~~~v~~~P~~~ 95 (130)
+.++|++.+. +++++ +|.||++||+.|+.+.+.++++++.+. ++.++.+|+++++.++++|++.++|+++
T Consensus 2 ~~~~~~~~~~----~~~~~---~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~ 74 (102)
T TIGR01126 2 TASNFDDIVL----SNKDV---LVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIK 74 (102)
T ss_pred chhhHHHHhc----cCCcE---EEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEE
Confidence 5677888775 57899 999999999999999999999998884 5999999999999999999999999999
Q ss_pred EeeCCeEEeeEecC-CHHHHHHHHHHH
Q 032978 96 LMREGAVVDKLVGA-NPEEIRKRIDSF 121 (130)
Q Consensus 96 ~~~~g~~~~~~~g~-~~~~l~~~i~~~ 121 (130)
+|.+|+....+.|. +.+.|..||+++
T Consensus 75 ~~~~~~~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 75 FFPKGKKPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred EecCCCcceeecCCCCHHHHHHHHHhc
Confidence 99877756667777 889999999875
No 38
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.85 E-value=2.4e-20 Score=113.89 Aligned_cols=98 Identities=31% Similarity=0.457 Sum_probs=83.8
Q ss_pred CeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCC---CeEEEEEeccCcHhHHHhcCCC
Q 032978 13 RVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYP---DVLFLSVDVDDVKDVASKLEVK 89 (130)
Q Consensus 13 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~---~v~~~~vd~~~~~~~~~~~~v~ 89 (130)
++..+ +.++|++.+.. .++++ +|+||++||++|+.+.+.++++++.+. ++.++.+|++++ +++..+++.
T Consensus 1 ~v~~l-~~~~f~~~i~~---~~~~~---~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~ 72 (104)
T cd02995 1 PVKVV-VGKNFDEVVLD---SDKDV---LVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVD 72 (104)
T ss_pred CeEEE-chhhhHHHHhC---CCCcE---EEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCC
Confidence 46778 78899998876 46889 999999999999999999999999873 499999999987 578889999
Q ss_pred CCCEEEEeeCCe--EEeeEecC-CHHHHHHHH
Q 032978 90 AMPTFLLMREGA--VVDKLVGA-NPEEIRKRI 118 (130)
Q Consensus 90 ~~P~~~~~~~g~--~~~~~~g~-~~~~l~~~i 118 (130)
++|++++|++|+ ...++.|. +.+.|..||
T Consensus 73 ~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 73 GFPTILFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred CCCEEEEEcCCCcCCceEccCCcCHHHHHhhC
Confidence 999999998887 55566676 788887774
No 39
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.84 E-value=6.8e-20 Score=111.17 Aligned_cols=91 Identities=19% Similarity=0.446 Sum_probs=81.3
Q ss_pred HHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCC-CeEEEEEeccCcHhHHHhcCCCCCCEEEEeeCCe
Q 032978 23 WETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYP-DVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGA 101 (130)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~ 101 (130)
++..+.. .++++ +++||++||+.|+.+.+.+++++++++ ++.++.+|.++.+++..++++.++|++++|++|+
T Consensus 5 ~~~~~~~---~~~~v---lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~ 78 (97)
T cd02949 5 LRKLYHE---SDRLI---LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKE 78 (97)
T ss_pred HHHHHHh---CCCeE---EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCe
Confidence 4455555 67899 999999999999999999999999984 5999999999999999999999999999999999
Q ss_pred EEeeEecC-CHHHHHHHHH
Q 032978 102 VVDKLVGA-NPEEIRKRID 119 (130)
Q Consensus 102 ~~~~~~g~-~~~~l~~~i~ 119 (130)
.+.+..|. +.+++.++++
T Consensus 79 ~v~~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 79 LVKEISGVKMKSEYREFIE 97 (97)
T ss_pred EEEEEeCCccHHHHHHhhC
Confidence 99999998 7788887763
No 40
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.84 E-value=3.9e-20 Score=113.09 Aligned_cols=98 Identities=31% Similarity=0.534 Sum_probs=83.4
Q ss_pred eEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCC---CeEEEEEeccC-cHhHHHhcCCC
Q 032978 14 VVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYP---DVLFLSVDVDD-VKDVASKLEVK 89 (130)
Q Consensus 14 v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~---~v~~~~vd~~~-~~~~~~~~~v~ 89 (130)
+.++ +.+++++.+.. .++++ +|.||++||++|+.+.+.++.+++.+. ++.++.+|++. ++.++++|+++
T Consensus 2 ~~~l-~~~~~~~~~~~---~~~~~---~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~ 74 (105)
T cd02998 2 VVEL-TDSNFDKVVGD---DKKDV---LVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVS 74 (105)
T ss_pred eEEc-chhcHHHHhcC---CCCcE---EEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCC
Confidence 5677 77889887654 45789 999999999999999999999999873 59999999999 99999999999
Q ss_pred CCCEEEEeeCC-eEEeeEecC-CHHHHHHHH
Q 032978 90 AMPTFLLMREG-AVVDKLVGA-NPEEIRKRI 118 (130)
Q Consensus 90 ~~P~~~~~~~g-~~~~~~~g~-~~~~l~~~i 118 (130)
++|++++|.+| +....+.|. +.+.|.+||
T Consensus 75 ~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 75 GFPTLKFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred CcCEEEEEeCCCCCccccCCccCHHHHHhhC
Confidence 99999999766 555566665 888888774
No 41
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.84 E-value=1.1e-19 Score=113.19 Aligned_cols=88 Identities=23% Similarity=0.301 Sum_probs=77.9
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCCCCCCEEEEeeCCeEEe--eEecC-
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVD--KLVGA- 109 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~--~~~g~- 109 (130)
++..+ +|+||++||++|+.+.+.+++++..++.+.|+.+|.+++++++.+|+|.++|+++++++|+... ++.|.
T Consensus 21 ~~~~v---vv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~ 97 (113)
T cd02975 21 NPVDL---VVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLP 97 (113)
T ss_pred CCeEE---EEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecC
Confidence 56667 8999999999999999999999988877999999999999999999999999999998765443 56677
Q ss_pred CHHHHHHHHHHHhh
Q 032978 110 NPEEIRKRIDSFVQ 123 (130)
Q Consensus 110 ~~~~l~~~i~~~~~ 123 (130)
+..++.++|..++.
T Consensus 98 ~~~el~~~i~~i~~ 111 (113)
T cd02975 98 AGYEFASLIEDIVR 111 (113)
T ss_pred chHHHHHHHHHHHh
Confidence 78899999998764
No 42
>PTZ00062 glutaredoxin; Provisional
Probab=99.84 E-value=6.1e-20 Score=124.47 Aligned_cols=94 Identities=13% Similarity=0.171 Sum_probs=84.5
Q ss_pred cChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCCCCCCEEEEe
Q 032978 18 DSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLM 97 (130)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~ 97 (130)
.+.+++.+.+.. ..+.+ +++||++||++|+.+.+.+++|+++|+++.|+.||.+ |+|.++|+|++|
T Consensus 4 ~~~ee~~~~i~~---~~g~~---vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~V~~vPtfv~~ 69 (204)
T PTZ00062 4 IKKEEKDKLIES---NTGKL---VLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DANNEYGVFEFY 69 (204)
T ss_pred CCHHHHHHHHhc---CCCcE---EEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cCcccceEEEEE
Confidence 467788888763 23678 8999999999999999999999999999999999988 999999999999
Q ss_pred eCCeEEeeEecCCHHHHHHHHHHHhhhh
Q 032978 98 REGAVVDKLVGANPEEIRKRIDSFVQSI 125 (130)
Q Consensus 98 ~~g~~~~~~~g~~~~~l~~~i~~~~~~~ 125 (130)
++|+.+.++.|.++.+|..++.++.+..
T Consensus 70 ~~g~~i~r~~G~~~~~~~~~~~~~~~~~ 97 (204)
T PTZ00062 70 QNSQLINSLEGCNTSTLVSFIRGWAQKG 97 (204)
T ss_pred ECCEEEeeeeCCCHHHHHHHHHHHcCCC
Confidence 9999999999999999999999886543
No 43
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.83 E-value=3.8e-20 Score=113.53 Aligned_cols=92 Identities=25% Similarity=0.437 Sum_probs=78.7
Q ss_pred hhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHH---HHHHHhCC-CeEEEEEeccC----cHhHHHhcCCCCCC
Q 032978 21 ESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLF---EELASAYP-DVLFLSVDVDD----VKDVASKLEVKAMP 92 (130)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l---~~l~~~~~-~v~~~~vd~~~----~~~~~~~~~v~~~P 92 (130)
+.+.+++. +++++ +|+||++||++|+.+.+.+ +++++.+. ++.++.+|+++ .++++++|++.++|
T Consensus 2 ~~~~~~~~----~~k~v---lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~P 74 (104)
T cd02953 2 AALAQALA----QGKPV---FVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPP 74 (104)
T ss_pred HHHHHHHH----cCCeE---EEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCC
Confidence 45666664 67999 9999999999999999987 57777775 79999999987 67899999999999
Q ss_pred EEEEee--CCeEEeeEecC-CHHHHHHHHH
Q 032978 93 TFLLMR--EGAVVDKLVGA-NPEEIRKRID 119 (130)
Q Consensus 93 ~~~~~~--~g~~~~~~~g~-~~~~l~~~i~ 119 (130)
++++|+ +|+.+.++.|. +.++|.++|+
T Consensus 75 ti~~~~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 75 TYLFYGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred EEEEECCCCCCCCcccccccCHHHHHHHhC
Confidence 999997 78998888888 8888888763
No 44
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.83 E-value=2.1e-19 Score=113.29 Aligned_cols=98 Identities=11% Similarity=0.151 Sum_probs=80.8
Q ss_pred CeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcH-----------h
Q 032978 13 RVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVK-----------D 81 (130)
Q Consensus 13 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~-----------~ 81 (130)
.+..+ +.+++.+.+. .++.+ +|+|+++|||+|+.+.|.|++++++ .++.|+.+|.+.+. +
T Consensus 7 ~~~~i-t~~~~~~~i~----~~~~~---iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~ 77 (122)
T TIGR01295 7 GLEVT-TVVRALEALD----KKETA---TFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTA 77 (122)
T ss_pred cceec-CHHHHHHHHH----cCCcE---EEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHH
Confidence 45566 7788888887 67888 9999999999999999999999998 46778888887542 5
Q ss_pred HHHhcC----CCCCCEEEEeeCCeEEeeEecC--CHHHHHHHHH
Q 032978 82 VASKLE----VKAMPTFLLMREGAVVDKLVGA--NPEEIRKRID 119 (130)
Q Consensus 82 ~~~~~~----v~~~P~~~~~~~g~~~~~~~g~--~~~~l~~~i~ 119 (130)
+.+.|+ +.++||+++|++|+.+.+..|. +.++|.+++.
T Consensus 78 ~~~~~~i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 78 FRSRFGIPTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred HHHHcCCcccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 556665 5569999999999999999884 6888888763
No 45
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.83 E-value=2e-19 Score=121.33 Aligned_cols=105 Identities=23% Similarity=0.326 Sum_probs=88.1
Q ss_pred hhcCCCeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcC
Q 032978 8 QQNKSRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLE 87 (130)
Q Consensus 8 ~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~ 87 (130)
....+.+.++ +..+|...+..+. ++.+| ||.||++||++|+.+.+.|++|+.+|+.+.|+.||++.. ...|+
T Consensus 78 ~~~~G~v~ei-s~~~f~~eV~~as-~~~~V---VV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~---~~~~~ 149 (192)
T cd02988 78 KSKFGEVYEI-SKPDYVREVTEAS-KDTWV---VVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC---IPNYP 149 (192)
T ss_pred hCCCCeEEEe-CHHHHHHHHHhcC-CCCEE---EEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HhhCC
Confidence 3456789999 7888888776542 34689 999999999999999999999999999999999999864 58899
Q ss_pred CCCCCEEEEeeCCeEEeeEecC--------CHHHHHHHHHH
Q 032978 88 VKAMPTFLLMREGAVVDKLVGA--------NPEEIRKRIDS 120 (130)
Q Consensus 88 v~~~P~~~~~~~g~~~~~~~g~--------~~~~l~~~i~~ 120 (130)
+.++||+++|++|+.+.++.|. +.+.|+.++.+
T Consensus 150 i~~lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 150 DKNLPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred CCCCCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 9999999999999999988875 35666665543
No 46
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.83 E-value=1.4e-19 Score=112.05 Aligned_cols=101 Identities=23% Similarity=0.347 Sum_probs=82.7
Q ss_pred CeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCC--CeEEEEEeccC-cHhHHH-hcCC
Q 032978 13 RVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYP--DVLFLSVDVDD-VKDVAS-KLEV 88 (130)
Q Consensus 13 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~--~v~~~~vd~~~-~~~~~~-~~~v 88 (130)
.|.++ +.++|+..+.... .++++ +|.||++||++|+.+.|.++++++.+. ++.++.||++. ...++. .|++
T Consensus 2 ~v~~~-~~~~~~~~~~~~~-~~k~v---lv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v 76 (109)
T cd02993 2 AVVTL-SRAEIEALAKGER-RNQST---LVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQL 76 (109)
T ss_pred cceec-cHHHHHHHHhhhh-cCCCE---EEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCC
Confidence 46778 8889998875421 67899 999999999999999999999999884 59999999997 567776 4999
Q ss_pred CCCCEEEEeeCC-eEEeeEecC--CHHHHHHHH
Q 032978 89 KAMPTFLLMREG-AVVDKLVGA--NPEEIRKRI 118 (130)
Q Consensus 89 ~~~P~~~~~~~g-~~~~~~~g~--~~~~l~~~i 118 (130)
+++||+++|.+| +....+.|. +.+.|..||
T Consensus 77 ~~~Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 77 KSFPTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CcCCEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 999999999654 455566663 788887774
No 47
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.82 E-value=1.8e-19 Score=108.80 Aligned_cols=93 Identities=28% Similarity=0.445 Sum_probs=81.7
Q ss_pred ChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC---CCeEEEEEeccCcHhHHHhcCCCCCCEEE
Q 032978 19 SVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY---PDVLFLSVDVDDVKDVASKLEVKAMPTFL 95 (130)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~---~~v~~~~vd~~~~~~~~~~~~v~~~P~~~ 95 (130)
+..+|.+.+.. ++++ +|.||++||++|+.+.+.++++++.+ .++.|+.+|+++++.++++|+|.++|+++
T Consensus 4 ~~~~~~~~i~~----~~~~---~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~ 76 (101)
T cd02961 4 TDDNFDELVKD----SKDV---LVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIK 76 (101)
T ss_pred cHHHHHHHHhC----CCcE---EEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEE
Confidence 66788888874 4588 99999999999999999999999888 56999999999999999999999999999
Q ss_pred EeeCC-eEEeeEecC-CHHHHHHHH
Q 032978 96 LMREG-AVVDKLVGA-NPEEIRKRI 118 (130)
Q Consensus 96 ~~~~g-~~~~~~~g~-~~~~l~~~i 118 (130)
+|.+| +...++.|. +.+.|.+|+
T Consensus 77 ~~~~~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 77 LFPNGSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred EEcCCCcccccCCCCcCHHHHHhhC
Confidence 99777 777777776 788887764
No 48
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.81 E-value=3.2e-19 Score=109.43 Aligned_cols=85 Identities=20% Similarity=0.357 Sum_probs=74.5
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCC----CeEEEEEeccCcHhHHHhcCCCCCCEEEEeeCCeEEeeEec
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYP----DVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVG 108 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~----~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g 108 (130)
+++++ +|.||++||++|+.+.|.++++++.+. ++.++.+|++..+.++++|+|.++|++++|++|.. ..+.|
T Consensus 14 ~~~~v---lv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~~-~~~~G 89 (104)
T cd03000 14 KEDIW---LVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDLA-YNYRG 89 (104)
T ss_pred cCCeE---EEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCCc-eeecC
Confidence 56789 999999999999999999999998872 39999999999999999999999999999987754 44666
Q ss_pred C-CHHHHHHHHHHH
Q 032978 109 A-NPEEIRKRIDSF 121 (130)
Q Consensus 109 ~-~~~~l~~~i~~~ 121 (130)
. +.+.|..++++.
T Consensus 90 ~~~~~~l~~~~~~~ 103 (104)
T cd03000 90 PRTKDDIVEFANRV 103 (104)
T ss_pred CCCHHHHHHHHHhh
Confidence 6 889999998874
No 49
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.81 E-value=1.5e-18 Score=102.98 Aligned_cols=90 Identities=42% Similarity=0.802 Sum_probs=80.5
Q ss_pred hHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCCCCCCEEEEeeCCe
Q 032978 22 SWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGA 101 (130)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~ 101 (130)
+|.+.+. .++++ +|+||++||+.|+.+.+.++++++..+++.|+.+|++..+.++++|++.++|+++++.+|+
T Consensus 2 ~~~~~~~----~~~~~---ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 2 EFEELIK----SAKPV---VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred chHHHHh----cCCcE---EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEEECCE
Confidence 4556665 34888 9999999999999999999999988778999999999999999999999999999999999
Q ss_pred EEeeEecC-CHHHHHHHH
Q 032978 102 VVDKLVGA-NPEEIRKRI 118 (130)
Q Consensus 102 ~~~~~~g~-~~~~l~~~i 118 (130)
.+..+.|. +.+.|.++|
T Consensus 75 ~~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 75 EVDRVVGADPKEELEEFL 92 (93)
T ss_pred EEEEEecCCCHHHHHHHh
Confidence 99988888 668888776
No 50
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.80 E-value=3e-19 Score=111.40 Aligned_cols=89 Identities=20% Similarity=0.297 Sum_probs=75.2
Q ss_pred CeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCC----CeEEEEEecc--CcHhHHHhc
Q 032978 13 RVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYP----DVLFLSVDVD--DVKDVASKL 86 (130)
Q Consensus 13 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~----~v~~~~vd~~--~~~~~~~~~ 86 (130)
++.++ +.++|++.+.. .++++ +|.||++||++|+.+.+.++++++.+. .+.|+.+|++ .+..++++|
T Consensus 2 ~v~~l-~~~~f~~~i~~---~~~~v---vV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~ 74 (114)
T cd02992 2 PVIVL-DAASFNSALLG---SPSAW---LVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDF 74 (114)
T ss_pred CeEEC-CHHhHHHHHhc---CCCeE---EEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhC
Confidence 57788 88999999886 45799 999999999999999999999998762 3899999975 467899999
Q ss_pred CCCCCCEEEEeeCCeEEeeEecC
Q 032978 87 EVKAMPTFLLMREGAVVDKLVGA 109 (130)
Q Consensus 87 ~v~~~P~~~~~~~g~~~~~~~g~ 109 (130)
+++++|++++|++|+ .....|.
T Consensus 75 ~i~~~Pt~~lf~~~~-~~~~~~~ 96 (114)
T cd02992 75 GVTGYPTLRYFPPFS-KEATDGL 96 (114)
T ss_pred CCCCCCEEEEECCCC-ccCCCCC
Confidence 999999999998887 4434444
No 51
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.80 E-value=1.5e-18 Score=109.68 Aligned_cols=89 Identities=18% Similarity=0.367 Sum_probs=75.6
Q ss_pred CC-CceEeEEeEEEcCCChhhhhhhHHHH---HHHHhC-CCeEEEEEeccCc-------------HhHHHhcCCCCCCEE
Q 032978 33 QG-CPVRNVVVHFTAIWCMPSVAMNPLFE---ELASAY-PDVLFLSVDVDDV-------------KDVASKLEVKAMPTF 94 (130)
Q Consensus 33 ~~-~~~~~~vv~f~~~~C~~C~~~~~~l~---~l~~~~-~~v~~~~vd~~~~-------------~~~~~~~~v~~~P~~ 94 (130)
++ +++ +|.||++||++|+.+.+.+. .+.+.+ .++.++.+|++.. ..++.+|++.++|++
T Consensus 12 ~~~k~v---lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~ 88 (125)
T cd02951 12 DGKKPL---LLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTV 88 (125)
T ss_pred cCCCcE---EEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEE
Confidence 67 999 99999999999999999774 455555 4688999998864 688999999999999
Q ss_pred EEeeC--CeEEeeEecC-CHHHHHHHHHHHhhh
Q 032978 95 LLMRE--GAVVDKLVGA-NPEEIRKRIDSFVQS 124 (130)
Q Consensus 95 ~~~~~--g~~~~~~~g~-~~~~l~~~i~~~~~~ 124 (130)
+++.+ |+.+.+..|. +.+.+.++|+.++..
T Consensus 89 ~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 89 IFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred EEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 99954 6999999998 789999999988654
No 52
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=6.7e-19 Score=131.42 Aligned_cols=110 Identities=25% Similarity=0.402 Sum_probs=97.6
Q ss_pred cCCCeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC----CCeEEEEEeccCcHhHHHh
Q 032978 10 NKSRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY----PDVLFLSVDVDDVKDVASK 85 (130)
Q Consensus 10 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~----~~v~~~~vd~~~~~~~~~~ 85 (130)
....|..+ +.++|+..+. .+..+ +|.||||||++|+.+.|.+++.+... +.+.++.||++++..++.+
T Consensus 23 ~~~~Vl~L-t~dnf~~~i~----~~~~v---lVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~ 94 (493)
T KOG0190|consen 23 AEEDVLVL-TKDNFKETIN----GHEFV---LVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASK 94 (493)
T ss_pred cccceEEE-ecccHHHHhc----cCceE---EEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhh
Confidence 46678889 8999999998 45888 99999999999999999999998877 4799999999999999999
Q ss_pred cCCCCCCEEEEeeCCeEEeeEecC-CHHHHHHHHHHHhhhhcc
Q 032978 86 LEVKAMPTFLLMREGAVVDKLVGA-NPEEIRKRIDSFVQSIRV 127 (130)
Q Consensus 86 ~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~~ 127 (130)
|+|+++||+-++++|+....+.|. ..+.+..|+.+..+.+..
T Consensus 95 y~v~gyPTlkiFrnG~~~~~Y~G~r~adgIv~wl~kq~gPa~~ 137 (493)
T KOG0190|consen 95 YEVRGYPTLKIFRNGRSAQDYNGPREADGIVKWLKKQSGPASK 137 (493)
T ss_pred hcCCCCCeEEEEecCCcceeccCcccHHHHHHHHHhccCCCce
Confidence 999999999999999975556666 999999999998766543
No 53
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.79 E-value=2.2e-18 Score=107.80 Aligned_cols=97 Identities=21% Similarity=0.378 Sum_probs=79.7
Q ss_pred ecChhhHHHHHHHhhcCCCceEeEEeEEEc-------CCChhhhhhhHHHHHHHHhCC-CeEEEEEeccC-------cHh
Q 032978 17 VDSVESWETFVSQANNQGCPVRNVVVHFTA-------IWCMPSVAMNPLFEELASAYP-DVLFLSVDVDD-------VKD 81 (130)
Q Consensus 17 i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~-------~~C~~C~~~~~~l~~l~~~~~-~v~~~~vd~~~-------~~~ 81 (130)
+++.++|.+.+... +++++ +|.||+ +||++|+.+.|.+++++.+++ ++.|+.||+++ +.+
T Consensus 6 ~~~~~~f~~~i~~~--~~~~v---vV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~ 80 (119)
T cd02952 6 VRGYEEFLKLLKSH--EGKPI---FILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNP 80 (119)
T ss_pred ccCHHHHHHHHHhc--CCCeE---EEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchh
Confidence 45678888888865 67899 999999 999999999999999999997 69999999976 458
Q ss_pred HHHhcCCC-CCCEEEEeeCCeEEeeEecCCHHHHHHHH
Q 032978 82 VASKLEVK-AMPTFLLMREGAVVDKLVGANPEEIRKRI 118 (130)
Q Consensus 82 ~~~~~~v~-~~P~~~~~~~g~~~~~~~g~~~~~l~~~i 118 (130)
++.+|+|. ++||+++|++|+.+....-.+.+.+..++
T Consensus 81 ~~~~~~I~~~iPT~~~~~~~~~l~~~~c~~~~~~~~~~ 118 (119)
T cd02952 81 FRTDPKLTTGVPTLLRWKTPQRLVEDECLQADLVEMFF 118 (119)
T ss_pred hHhccCcccCCCEEEEEcCCceecchhhcCHHHHHHhh
Confidence 99999998 99999999888665543333555555543
No 54
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.78 E-value=4e-18 Score=127.82 Aligned_cols=104 Identities=26% Similarity=0.469 Sum_probs=91.7
Q ss_pred CeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC----CCeEEEEEeccCcHhHHHhcCC
Q 032978 13 RVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY----PDVLFLSVDVDDVKDVASKLEV 88 (130)
Q Consensus 13 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~----~~v~~~~vd~~~~~~~~~~~~v 88 (130)
.+..+ +.+++...+. +++++ +|.||++||++|+.+.|.+.++++.+ +++.|+.||++.+++++++|+|
T Consensus 2 ~v~~l-~~~~~~~~i~----~~~~~---~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i 73 (462)
T TIGR01130 2 DVLVL-TKDNFDDFIK----SHEFV---LVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGV 73 (462)
T ss_pred CceEC-CHHHHHHHHh----cCCCE---EEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCC
Confidence 46677 8889999886 56789 99999999999999999999988876 3499999999999999999999
Q ss_pred CCCCEEEEeeCCeE-EeeEecC-CHHHHHHHHHHHhhh
Q 032978 89 KAMPTFLLMREGAV-VDKLVGA-NPEEIRKRIDSFVQS 124 (130)
Q Consensus 89 ~~~P~~~~~~~g~~-~~~~~g~-~~~~l~~~i~~~~~~ 124 (130)
.++||+++|++|+. +..+.|. +.+.|.+|+.+.+..
T Consensus 74 ~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~ 111 (462)
T TIGR01130 74 SGYPTLKIFRNGEDSVSDYNGPRDADGIVKYMKKQSGP 111 (462)
T ss_pred ccccEEEEEeCCccceeEecCCCCHHHHHHHHHHhcCC
Confidence 99999999999987 6667777 899999999998753
No 55
>PTZ00102 disulphide isomerase; Provisional
Probab=99.78 E-value=4.5e-18 Score=128.38 Aligned_cols=105 Identities=21% Similarity=0.446 Sum_probs=92.7
Q ss_pred CCCeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC----CCeEEEEEeccCcHhHHHhc
Q 032978 11 KSRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY----PDVLFLSVDVDDVKDVASKL 86 (130)
Q Consensus 11 ~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~----~~v~~~~vd~~~~~~~~~~~ 86 (130)
...+..+ +.++++..+. +++.+ +|.||++||++|+++.|.++++++.+ +++.|+.+|++.+..++++|
T Consensus 31 ~~~v~~l-~~~~f~~~i~----~~~~~---lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~ 102 (477)
T PTZ00102 31 SEHVTVL-TDSTFDKFIT----ENEIV---LVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEF 102 (477)
T ss_pred CCCcEEc-chhhHHHHHh----cCCcE---EEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhc
Confidence 3567888 8889999886 56788 99999999999999999999988665 45999999999999999999
Q ss_pred CCCCCCEEEEeeCCeEEeeEecC-CHHHHHHHHHHHhhh
Q 032978 87 EVKAMPTFLLMREGAVVDKLVGA-NPEEIRKRIDSFVQS 124 (130)
Q Consensus 87 ~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~ 124 (130)
+|.++|++++|++|+.+ .+.|. +.+.|.+|+++++..
T Consensus 103 ~i~~~Pt~~~~~~g~~~-~y~g~~~~~~l~~~l~~~~~~ 140 (477)
T PTZ00102 103 GVRGYPTIKFFNKGNPV-NYSGGRTADGIVSWIKKLTGP 140 (477)
T ss_pred CCCcccEEEEEECCceE-EecCCCCHHHHHHHHHHhhCC
Confidence 99999999999999877 66676 899999999998754
No 56
>PLN02309 5'-adenylylsulfate reductase
Probab=99.77 E-value=7.5e-18 Score=125.97 Aligned_cols=109 Identities=27% Similarity=0.365 Sum_probs=89.8
Q ss_pred hhcCCCeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC--CCeEEEEEecc-CcHhHHH
Q 032978 8 QQNKSRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVD-DVKDVAS 84 (130)
Q Consensus 8 ~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~-~~~~~~~ 84 (130)
......+.++ +.++|++.+.... .++++ ||+||++||++|+.+.|.++++++++ .++.|+.+|++ .+..++.
T Consensus 341 l~~~~~Vv~L-t~~nfe~ll~~~~-~~k~v---lV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~ 415 (457)
T PLN02309 341 IFNSQNVVAL-SRAGIENLLKLEN-RKEPW---LVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAK 415 (457)
T ss_pred ccCCCCcEEC-CHHHHHHHHHhhc-CCCeE---EEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHH
Confidence 3445678888 8889999886432 78899 99999999999999999999999998 35999999999 7788886
Q ss_pred -hcCCCCCCEEEEeeCCeE-EeeEe-cC-CHHHHHHHHHHH
Q 032978 85 -KLEVKAMPTFLLMREGAV-VDKLV-GA-NPEEIRKRIDSF 121 (130)
Q Consensus 85 -~~~v~~~P~~~~~~~g~~-~~~~~-g~-~~~~l~~~i~~~ 121 (130)
+|+|.++||+++|++|.. ...+. +. +.+.|..||+.+
T Consensus 416 ~~~~I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 416 QELQLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred hhCCCceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 599999999999976642 23343 33 889999999875
No 57
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.77 E-value=7.7e-18 Score=125.98 Aligned_cols=110 Identities=19% Similarity=0.270 Sum_probs=88.6
Q ss_pred hhhcCCCeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCC--CeEEEEEeccCcH-hHH
Q 032978 7 EQQNKSRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYP--DVLFLSVDVDDVK-DVA 83 (130)
Q Consensus 7 ~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~--~v~~~~vd~~~~~-~~~ 83 (130)
+......|.++ +.++|+..+... ..++++ ||.||++||++|+.+.|.|+++++++. ++.|+.||++.+. .++
T Consensus 346 dl~~~~~Vv~L-~~~nf~~~v~~~-~~~k~V---LV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~ 420 (463)
T TIGR00424 346 DIFDSNNVVSL-SRPGIENLLKLE-ERKEAW---LVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFA 420 (463)
T ss_pred cccCCCCeEEC-CHHHHHHHHhhh-cCCCeE---EEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHH
Confidence 33456678888 888999998622 178899 999999999999999999999999984 4899999999764 454
Q ss_pred -HhcCCCCCCEEEEeeCCeE-EeeEe-cC-CHHHHHHHHHHH
Q 032978 84 -SKLEVKAMPTFLLMREGAV-VDKLV-GA-NPEEIRKRIDSF 121 (130)
Q Consensus 84 -~~~~v~~~P~~~~~~~g~~-~~~~~-g~-~~~~l~~~i~~~ 121 (130)
++|+|.++||+++|++|+. ...+. |. +.+.|..||+.+
T Consensus 421 ~~~~~I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 421 KQELQLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred HHHcCCCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 6899999999999988752 23343 34 899999999864
No 58
>PTZ00102 disulphide isomerase; Provisional
Probab=99.76 E-value=1e-17 Score=126.52 Aligned_cols=107 Identities=18% Similarity=0.346 Sum_probs=92.9
Q ss_pred CCCeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCC---CeEEEEEeccCcHhHHHhcC
Q 032978 11 KSRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYP---DVLFLSVDVDDVKDVASKLE 87 (130)
Q Consensus 11 ~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~---~v~~~~vd~~~~~~~~~~~~ 87 (130)
.+++..+ +.++|++.+.. .++++ +|+||++||++|+.+.|.++++++.+. .+.++.+|++.+...+++|+
T Consensus 356 ~~~v~~l-~~~~f~~~v~~---~~k~v---lv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~ 428 (477)
T PTZ00102 356 DGPVKVV-VGNTFEEIVFK---SDKDV---LLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFS 428 (477)
T ss_pred CCCeEEe-cccchHHHHhc---CCCCE---EEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCC
Confidence 3457778 78899988765 67899 999999999999999999999998873 49999999999998999999
Q ss_pred CCCCCEEEEeeCCeEE-eeEecC-CHHHHHHHHHHHhhh
Q 032978 88 VKAMPTFLLMREGAVV-DKLVGA-NPEEIRKRIDSFVQS 124 (130)
Q Consensus 88 v~~~P~~~~~~~g~~~-~~~~g~-~~~~l~~~i~~~~~~ 124 (130)
++++|++++|++|+.+ ..+.|. +.+.|.++|+++...
T Consensus 429 v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 429 WSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHATN 467 (477)
T ss_pred CcccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCCC
Confidence 9999999999877655 467776 899999999998764
No 59
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.73 E-value=8.3e-17 Score=94.37 Aligned_cols=78 Identities=24% Similarity=0.345 Sum_probs=68.5
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCC-CeEEEEEeccCcHhHHHhcCCCCCCEEEEeeCCeEEeeEecC-CHHHHHHHH
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYP-DVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGA-NPEEIRKRI 118 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~i 118 (130)
|..||++||++|+.+.+.++++++.++ .+.++.||.++.++++++|++.++|++++ +|+. ++.|. +.+++.+++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~~--~~~G~~~~~~l~~~l 78 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGDV--EFIGAPTKEELVEAI 78 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCEE--EEecCCCHHHHHHHH
Confidence 678999999999999999999999884 59999999999999999999999999886 6763 56676 889999998
Q ss_pred HHHh
Q 032978 119 DSFV 122 (130)
Q Consensus 119 ~~~~ 122 (130)
++.+
T Consensus 79 ~~~~ 82 (82)
T TIGR00411 79 KKRL 82 (82)
T ss_pred HhhC
Confidence 8753
No 60
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.73 E-value=6.2e-17 Score=124.67 Aligned_cols=107 Identities=18% Similarity=0.419 Sum_probs=91.3
Q ss_pred CeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHH---HHHHHhCCCeEEEEEeccCc----HhHHHh
Q 032978 13 RVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLF---EELASAYPDVLFLSVDVDDV----KDVASK 85 (130)
Q Consensus 13 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l---~~l~~~~~~v~~~~vd~~~~----~~~~~~ 85 (130)
....+.+.+++++.+.++..+++++ +|+||++||++|+.+.+.. +++.++++++.++.+|++++ .++.++
T Consensus 453 ~~~~i~s~~~l~~~l~~a~~~gK~V---lVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~ 529 (571)
T PRK00293 453 NFQRIKTVAELDQALAEAKGKGKPV---MLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKH 529 (571)
T ss_pred CceecCCHHHHHHHHHHHHhcCCcE---EEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHH
Confidence 5677888899999998876678999 9999999999999998875 67777777899999999853 678899
Q ss_pred cCCCCCCEEEEee-CCeEE--eeEecC-CHHHHHHHHHHHh
Q 032978 86 LEVKAMPTFLLMR-EGAVV--DKLVGA-NPEEIRKRIDSFV 122 (130)
Q Consensus 86 ~~v~~~P~~~~~~-~g~~~--~~~~g~-~~~~l~~~i~~~~ 122 (130)
|++.++|++++|+ +|+++ .++.|. +++++.+++++..
T Consensus 530 ~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 530 YNVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred cCCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 9999999999995 78874 577787 8999999998753
No 61
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.72 E-value=2.8e-16 Score=107.96 Aligned_cols=89 Identities=25% Similarity=0.337 Sum_probs=75.5
Q ss_pred CCCceEeEEeEEEc---CCChhhhhhhHHHHHHHHhCCCe--EEEEEeccCcHhHHHhcCCCCCCEEEEeeCCeEEe-eE
Q 032978 33 QGCPVRNVVVHFTA---IWCMPSVAMNPLFEELASAYPDV--LFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVD-KL 106 (130)
Q Consensus 33 ~~~~~~~~vv~f~~---~~C~~C~~~~~~l~~l~~~~~~v--~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~-~~ 106 (130)
++... ++.|++ +||++|+.+.|.++++++.++++ .++.+|.+++++++++|+|.++||+++|++|+... ++
T Consensus 18 ~~~~~---i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~ 94 (215)
T TIGR02187 18 KNPVE---IVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRY 94 (215)
T ss_pred CCCeE---EEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEE
Confidence 44555 667888 99999999999999999999764 46666667999999999999999999999999874 77
Q ss_pred ecC-CHHHHHHHHHHHhhh
Q 032978 107 VGA-NPEEIRKRIDSFVQS 124 (130)
Q Consensus 107 ~g~-~~~~l~~~i~~~~~~ 124 (130)
.|. +.+++.++|+.++..
T Consensus 95 ~G~~~~~~l~~~i~~~~~~ 113 (215)
T TIGR02187 95 TGIPAGYEFAALIEDIVRV 113 (215)
T ss_pred eecCCHHHHHHHHHHHHHh
Confidence 787 888999999988643
No 62
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.71 E-value=1.3e-16 Score=99.19 Aligned_cols=98 Identities=10% Similarity=0.170 Sum_probs=77.3
Q ss_pred CeEEecChhhHHHHHHHhhcCCCceEeEEeEEEc--CCCh---hhhhhhHHHHHHHHhCCCeEEEEEec-----cCcHhH
Q 032978 13 RVVKVDSVESWETFVSQANNQGCPVRNVVVHFTA--IWCM---PSVAMNPLFEELASAYPDVLFLSVDV-----DDVKDV 82 (130)
Q Consensus 13 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~--~~C~---~C~~~~~~l~~l~~~~~~v~~~~vd~-----~~~~~~ 82 (130)
.+..+ +.++|++.+. +.+.+ +|.||+ |||. +|+.+.|.+.+.+. .|.++.||+ .++.+|
T Consensus 2 g~v~L-~~~nF~~~v~----~~~~v---lV~F~A~~Pwc~k~~~~~~LA~e~~~aa~---~v~lakVd~~d~~~~~~~~L 70 (116)
T cd03007 2 GCVDL-DTVTFYKVIP----KFKYS---LVKFDTAYPYGEKHEAFTRLAESSASATD---DLLVAEVGIKDYGEKLNMEL 70 (116)
T ss_pred CeeEC-ChhhHHHHHh----cCCcE---EEEEeCCCCCCCChHHHHHHHHHHHhhcC---ceEEEEEecccccchhhHHH
Confidence 46678 8999999997 56889 999999 8888 66665555544432 499999999 467889
Q ss_pred HHhcCCC--CCCEEEEeeCCe--EEeeEec--CCHHHHHHHHHHH
Q 032978 83 ASKLEVK--AMPTFLLMREGA--VVDKLVG--ANPEEIRKRIDSF 121 (130)
Q Consensus 83 ~~~~~v~--~~P~~~~~~~g~--~~~~~~g--~~~~~l~~~i~~~ 121 (130)
+++|+|+ ++||+.+|++|. ....+.| .+.+.|.+||.+.
T Consensus 71 ~~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 71 GERYKLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred HHHhCCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 9999999 999999999884 3234455 4889999999875
No 63
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.71 E-value=1e-16 Score=97.87 Aligned_cols=86 Identities=22% Similarity=0.332 Sum_probs=77.3
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC-CCeEEEEEeccCcHhHHHhcCCC--CCCEEEEeeC--CeEEeeEe
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY-PDVLFLSVDVDDVKDVASKLEVK--AMPTFLLMRE--GAVVDKLV 107 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~~v~~~~vd~~~~~~~~~~~~v~--~~P~~~~~~~--g~~~~~~~ 107 (130)
.++++ ++.|+++||++|..+.+.++++++++ +.+.|+.+|+++++.++..|++. ++|+++++++ |+......
T Consensus 11 ~~~~~---~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~ 87 (103)
T cd02982 11 SGKPL---LVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPE 87 (103)
T ss_pred cCCCE---EEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCc
Confidence 35788 99999999999999999999999999 45999999999999999999999 9999999987 76666655
Q ss_pred cC-CHHHHHHHHHHH
Q 032978 108 GA-NPEEIRKRIDSF 121 (130)
Q Consensus 108 g~-~~~~l~~~i~~~ 121 (130)
+. +.+.|.+|++.+
T Consensus 88 ~~~~~~~l~~fi~~~ 102 (103)
T cd02982 88 EELTAESLEEFVEDF 102 (103)
T ss_pred cccCHHHHHHHHHhh
Confidence 65 889999999875
No 64
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.70 E-value=5.6e-17 Score=101.56 Aligned_cols=97 Identities=19% Similarity=0.368 Sum_probs=72.6
Q ss_pred hHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC-CCeEEEEEeccCcH-hHHHhcCCCC--CCEEEEe
Q 032978 22 SWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY-PDVLFLSVDVDDVK-DVASKLEVKA--MPTFLLM 97 (130)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~~v~~~~vd~~~~~-~~~~~~~v~~--~P~~~~~ 97 (130)
+|+++++.+..+++++ +|.||++||++|+.+.+.+.+..... ....|+.++++... .....|++.+ +|+++++
T Consensus 7 ~~~~al~~A~~~~kpV---lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~ 83 (117)
T cd02959 7 TLEDGIKEAKDSGKPL---MLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFL 83 (117)
T ss_pred eHHHHHHHHHHcCCcE---EEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEE
Confidence 5777787776689999 99999999999999999999976654 34566777776654 4557888876 9999999
Q ss_pred -eCCeEEeeEec---C-CHHHHHHHHHHH
Q 032978 98 -REGAVVDKLVG---A-NPEEIRKRIDSF 121 (130)
Q Consensus 98 -~~g~~~~~~~g---~-~~~~l~~~i~~~ 121 (130)
.+|+.+.++.+ . +.+.+.+.++..
T Consensus 84 ~~~Gk~~~~~~~~~~~~~~~~f~~~~~~~ 112 (117)
T cd02959 84 DPSGDVHPEIINKKGNPNYKYFYSSAAQV 112 (117)
T ss_pred CCCCCCchhhccCCCCccccccCCCHHHH
Confidence 59998875443 3 445555544443
No 65
>PHA02125 thioredoxin-like protein
Probab=99.66 E-value=1.8e-15 Score=87.62 Aligned_cols=70 Identities=21% Similarity=0.613 Sum_probs=59.2
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCCCCCCEEEEeeCCeEEeeEecC--CHHHHHHHH
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGA--NPEEIRKRI 118 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~--~~~~l~~~i 118 (130)
+++||++||++|+.+.|.|+++. +.++.+|.++..+++++|+|.++||++ +|+.+.+..|. +..+|++.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~~~ 73 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKEKL 73 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHHHh
Confidence 78999999999999999998763 568899999999999999999999987 68888888887 335665543
No 66
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.66 E-value=2.9e-15 Score=102.87 Aligned_cols=77 Identities=21% Similarity=0.223 Sum_probs=69.4
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCCCCCCEEEEeeCCeEEeeEecC-CHHHHHHHHH
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGA-NPEEIRKRID 119 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~i~ 119 (130)
|+.||++||++|+.+.+.+++++.+++++.+..+|.+.+++++.+|+|.++||++++++|+. +.|. ..++|.+++.
T Consensus 137 I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~---~~G~~~~~~l~~~l~ 213 (215)
T TIGR02187 137 IEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVINKGVEE---FVGAYPEEQFLEYIL 213 (215)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEE---EECCCCHHHHHHHHH
Confidence 66699999999999999999999888889999999999999999999999999999988764 5576 7789998887
Q ss_pred H
Q 032978 120 S 120 (130)
Q Consensus 120 ~ 120 (130)
+
T Consensus 214 ~ 214 (215)
T TIGR02187 214 S 214 (215)
T ss_pred h
Confidence 5
No 67
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=3e-16 Score=117.32 Aligned_cols=104 Identities=29% Similarity=0.476 Sum_probs=86.2
Q ss_pred CCCeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC---CCeEEEEEeccCcHhHHHhcC
Q 032978 11 KSRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY---PDVLFLSVDVDDVKDVASKLE 87 (130)
Q Consensus 11 ~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~---~~v~~~~vd~~~~~~~~~~~~ 87 (130)
.++|..+ -.++|+.++.. .++-+ +|.||+|||+||+++.|.+++|++.| +++.|+++|.+.|. .....
T Consensus 365 ~~pVkvv-Vgknfd~iv~d---e~KdV---LvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd--~~~~~ 435 (493)
T KOG0190|consen 365 RSPVKVV-VGKNFDDIVLD---EGKDV---LVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND--VPSLK 435 (493)
T ss_pred cCCeEEE-eecCHHHHhhc---cccce---EEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc--Ccccc
Confidence 3678888 78889988876 67889 99999999999999999999999999 47999999999986 34557
Q ss_pred CCCCCEEEEeeCCe--EEeeEecC-CHHHHHHHHHHHhh
Q 032978 88 VKAMPTFLLMREGA--VVDKLVGA-NPEEIRKRIDSFVQ 123 (130)
Q Consensus 88 v~~~P~~~~~~~g~--~~~~~~g~-~~~~l~~~i~~~~~ 123 (130)
+.++||+.+++.|. ..-.+.|. +.+++..++++...
T Consensus 436 ~~~fPTI~~~pag~k~~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 436 VDGFPTILFFPAGHKSNPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred ccccceEEEecCCCCCCCcccCCCcchHHHHhhhccCCC
Confidence 78899999997664 23334555 88999999987754
No 68
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.65 E-value=3.2e-15 Score=100.53 Aligned_cols=88 Identities=22% Similarity=0.405 Sum_probs=72.7
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcH-----------------------hHHHhcCCC
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVK-----------------------DVASKLEVK 89 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~-----------------------~~~~~~~v~ 89 (130)
+++++ +|+||++||++|+...|.+.++.++ ++.++.|+.++.+ .+...|++.
T Consensus 67 ~gk~v---vv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~ 141 (185)
T PRK15412 67 QGKPV---LLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVY 141 (185)
T ss_pred CCCEE---EEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCC
Confidence 68899 9999999999999999999999764 6888888865432 245578999
Q ss_pred CCCEEEEe-eCCeEEeeEecC-CHHHHHHHHHHHhhhh
Q 032978 90 AMPTFLLM-REGAVVDKLVGA-NPEEIRKRIDSFVQSI 125 (130)
Q Consensus 90 ~~P~~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~~ 125 (130)
++|+.+++ ++|+....+.|. +.+.+++.|+.+++..
T Consensus 142 ~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~~ 179 (185)
T PRK15412 142 GAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEKY 179 (185)
T ss_pred cCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 99965555 799999999988 8889999999887654
No 69
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.65 E-value=2.7e-16 Score=110.67 Aligned_cols=85 Identities=16% Similarity=0.352 Sum_probs=76.1
Q ss_pred EEeEEEcCCChhhhhhhHHHHHHHHhC----CCeEEEEEeccCcHhHHHhcCCCCCCEEEEeeCCeEEeeEecCCHHHHH
Q 032978 40 VVVHFTAIWCMPSVAMNPLFEELASAY----PDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGANPEEIR 115 (130)
Q Consensus 40 ~vv~f~~~~C~~C~~~~~~l~~l~~~~----~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~l~ 115 (130)
|+|.||+|||.+|+++.|.|.++.-.. ..+++.++|++..+.++.+|+|+++||+.++++|-.+.+..|...+.+.
T Consensus 46 W~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~dYRG~R~Kd~ii 125 (468)
T KOG4277|consen 46 WFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAIDYRGGREKDAII 125 (468)
T ss_pred EEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeeecCCCccHHHHH
Confidence 499999999999999999999987655 2499999999999999999999999999999999999888777999999
Q ss_pred HHHHHHhhh
Q 032978 116 KRIDSFVQS 124 (130)
Q Consensus 116 ~~i~~~~~~ 124 (130)
++-.+..+.
T Consensus 126 eFAhR~a~a 134 (468)
T KOG4277|consen 126 EFAHRCAAA 134 (468)
T ss_pred HHHHhcccc
Confidence 988876543
No 70
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.64 E-value=1.5e-15 Score=93.96 Aligned_cols=83 Identities=30% Similarity=0.548 Sum_probs=64.5
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHHHHH---HHhC-CCeEEEEEeccCc--------------------HhHHHhcCC
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLFEEL---ASAY-PDVLFLSVDVDDV--------------------KDVASKLEV 88 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l---~~~~-~~v~~~~vd~~~~--------------------~~~~~~~~v 88 (130)
+++++ +++||++||++|+.+.+.+... ...+ .++.++.++++.. .++++.|+|
T Consensus 4 ~~k~~---v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 80 (112)
T PF13098_consen 4 NGKPI---VVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV 80 (112)
T ss_dssp TSSEE---EEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred CCCEE---EEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC
Confidence 68899 9999999999999999999864 3333 3688888887643 358899999
Q ss_pred CCCCEEEEe-eCCeEEeeEecC-CHHHHHHHH
Q 032978 89 KAMPTFLLM-REGAVVDKLVGA-NPEEIRKRI 118 (130)
Q Consensus 89 ~~~P~~~~~-~~g~~~~~~~g~-~~~~l~~~i 118 (130)
.++|+++++ .+|+.+..+.|. ++++|.+++
T Consensus 81 ~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 81 NGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp -SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred CccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 999999999 589999989999 888888764
No 71
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.64 E-value=2.5e-15 Score=112.74 Aligned_cols=105 Identities=26% Similarity=0.415 Sum_probs=87.1
Q ss_pred CCCeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCC----CeEEEEEeccCcHhHHHhc
Q 032978 11 KSRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYP----DVLFLSVDVDDVKDVASKL 86 (130)
Q Consensus 11 ~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~----~v~~~~vd~~~~~~~~~~~ 86 (130)
.+.+..+ +..+|.+.+.. .++.+ +|+||++||++|+.+.|.++++++.+. ++.|+.+|++.+. +.. +
T Consensus 345 ~~~v~~l-~~~~f~~~v~~---~~~~v---lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~ 415 (462)
T TIGR01130 345 EGPVKVL-VGKNFDEIVLD---ETKDV---LVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-F 415 (462)
T ss_pred CCccEEe-eCcCHHHHhcc---CCCeE---EEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-C
Confidence 3467777 78899998865 57888 999999999999999999999999883 5999999999875 444 9
Q ss_pred CCCCCCEEEEeeCCeEE--eeEecC-CHHHHHHHHHHHhhh
Q 032978 87 EVKAMPTFLLMREGAVV--DKLVGA-NPEEIRKRIDSFVQS 124 (130)
Q Consensus 87 ~v~~~P~~~~~~~g~~~--~~~~g~-~~~~l~~~i~~~~~~ 124 (130)
++.++|++++|++|+.. ..+.|. +.+.|.+||++....
T Consensus 416 ~i~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~ 456 (462)
T TIGR01130 416 EVEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHATF 456 (462)
T ss_pred CccccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcCCC
Confidence 99999999999887653 344455 899999999988644
No 72
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.63 E-value=1.5e-14 Score=102.43 Aligned_cols=87 Identities=18% Similarity=0.257 Sum_probs=72.1
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccC-----------cHhHHHhcCCCCCCEEEEeeC-C
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD-----------VKDVASKLEVKAMPTFLLMRE-G 100 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~-----------~~~~~~~~~v~~~P~~~~~~~-g 100 (130)
.++++ ||+||++||++|+.+.|.|++++++|+ +.++.|+++. +..++++|+|.++|+++++.. |
T Consensus 165 ~~k~~---Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~ 240 (271)
T TIGR02740 165 AKKSG---LFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDP 240 (271)
T ss_pred cCCeE---EEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCC
Confidence 78899 999999999999999999999999984 6676676654 346889999999999999964 5
Q ss_pred eEEe-eEecC-CHHHHHHHHHHHhh
Q 032978 101 AVVD-KLVGA-NPEEIRKRIDSFVQ 123 (130)
Q Consensus 101 ~~~~-~~~g~-~~~~l~~~i~~~~~ 123 (130)
+.+. ...|. +.++|.+.|.....
T Consensus 241 ~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 241 NQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred CEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 5544 44476 89999999988765
No 73
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.63 E-value=6.5e-15 Score=98.00 Aligned_cols=86 Identities=27% Similarity=0.438 Sum_probs=71.3
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEecc-----------------------CcHhHHHhcCCC
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVD-----------------------DVKDVASKLEVK 89 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~-----------------------~~~~~~~~~~v~ 89 (130)
+++++ +|+||++||++|+.+.|.++++.++ ++.++.|+.+ ....+.+.|++.
T Consensus 62 ~gk~v---ll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~ 136 (173)
T TIGR00385 62 QGKPV---LLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVY 136 (173)
T ss_pred CCCEE---EEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCe
Confidence 57899 9999999999999999999998764 5777777643 223566788999
Q ss_pred CCCEEEEe-eCCeEEeeEecC-CHHHHHHHHHHHhh
Q 032978 90 AMPTFLLM-REGAVVDKLVGA-NPEEIRKRIDSFVQ 123 (130)
Q Consensus 90 ~~P~~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~ 123 (130)
++|+.+++ ++|+.+..+.|. +.+++.+++++++.
T Consensus 137 ~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 137 GAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred eCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 99965555 799999999987 89999999999874
No 74
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.63 E-value=7.2e-15 Score=95.89 Aligned_cols=86 Identities=17% Similarity=0.296 Sum_probs=66.1
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCc------------HhHH-Hhc---CCCCCCEEEE
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDV------------KDVA-SKL---EVKAMPTFLL 96 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~------------~~~~-~~~---~v~~~P~~~~ 96 (130)
.++.. +|+||++||++|++..|.++++++++ ++.++.|+.+.. .... ..| ++.++|+.++
T Consensus 49 l~~~~---lvnFWAsWCppCr~e~P~L~~l~~~~-~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~L 124 (153)
T TIGR02738 49 QDDYA---LVFFYQSTCPYCHQFAPVLKRFSQQF-GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFL 124 (153)
T ss_pred cCCCE---EEEEECCCChhHHHHHHHHHHHHHHc-CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEE
Confidence 45777 99999999999999999999999998 466666666542 2333 345 7899999888
Q ss_pred e-eCCeE-EeeEecC-CHHHHHHHHHHHh
Q 032978 97 M-REGAV-VDKLVGA-NPEEIRKRIDSFV 122 (130)
Q Consensus 97 ~-~~g~~-~~~~~g~-~~~~l~~~i~~~~ 122 (130)
+ ++|+. ...+.|. +.+++++.|++++
T Consensus 125 ID~~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 125 VNVNTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred EeCCCCEEEEEeecccCHHHHHHHHHHhC
Confidence 8 55664 5567787 8889998888764
No 75
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.62 E-value=6.7e-15 Score=111.60 Aligned_cols=86 Identities=19% Similarity=0.335 Sum_probs=73.5
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCC--CeEEEEEec----------------------------cCcHhH
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYP--DVLFLSVDV----------------------------DDVKDV 82 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~--~v~~~~vd~----------------------------~~~~~~ 82 (130)
+++++ ||+||++||++|+...|.|++++++++ ++.|+.|.. +.+..+
T Consensus 55 kGKpV---vV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~l 131 (521)
T PRK14018 55 KDKPT---LIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTL 131 (521)
T ss_pred CCCEE---EEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHH
Confidence 78999 999999999999999999999999884 577766542 345578
Q ss_pred HHhcCCCCCCEEEEe-eCCeEEeeEecC-CHHHHHHHHHHH
Q 032978 83 ASKLEVKAMPTFLLM-REGAVVDKLVGA-NPEEIRKRIDSF 121 (130)
Q Consensus 83 ~~~~~v~~~P~~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~ 121 (130)
++.|+|.++|+++++ ++|+++..+.|. +.++|.++|+..
T Consensus 132 ak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 132 AQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNP 172 (521)
T ss_pred HHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 899999999998666 899999999998 889999999844
No 76
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.61 E-value=1e-14 Score=92.26 Aligned_cols=78 Identities=28% Similarity=0.464 Sum_probs=63.8
Q ss_pred cCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEec-----------------------cCcHhHHHhcCC
Q 032978 32 NQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDV-----------------------DDVKDVASKLEV 88 (130)
Q Consensus 32 ~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~-----------------------~~~~~~~~~~~v 88 (130)
.+++++ +|+||++||++|+...|.++++.+++ ++.|+.|+. +....+++.|++
T Consensus 23 ~~gk~v---vv~F~a~~C~~C~~~~~~l~~l~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v 98 (127)
T cd03010 23 LKGKPY---LLNVWASWCAPCREEHPVLMALARQG-RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGV 98 (127)
T ss_pred cCCCEE---EEEEEcCcCHHHHHHHHHHHHHHHhc-CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCC
Confidence 368899 99999999999999999999999886 477777763 334567888999
Q ss_pred CCCCEEEEe-eCCeEEeeEecC-CHHH
Q 032978 89 KAMPTFLLM-REGAVVDKLVGA-NPEE 113 (130)
Q Consensus 89 ~~~P~~~~~-~~g~~~~~~~g~-~~~~ 113 (130)
.++|+.+++ ++|+.+.++.|. +.+.
T Consensus 99 ~~~P~~~~ld~~G~v~~~~~G~~~~~~ 125 (127)
T cd03010 99 YGVPETFLIDGDGIIRYKHVGPLTPEV 125 (127)
T ss_pred CCCCeEEEECCCceEEEEEeccCChHh
Confidence 999965555 799999998887 5544
No 77
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.60 E-value=1.9e-14 Score=83.52 Aligned_cols=71 Identities=18% Similarity=0.272 Sum_probs=57.2
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCC-CeEEEEEeccCcHhHHHhcCCCCCCEEEEeeCCeEEeeEecC--CHHHHHHH
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYP-DVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGA--NPEEIRKR 117 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~--~~~~l~~~ 117 (130)
.|.||++||++|+.+.+.+++++++++ .+.|+.+| ..+.+.+|++.++|++++ +|+.+ ..|. +.+++.++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~ 74 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEI 74 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHH
Confidence 478999999999999999999999985 47887777 234477899999999888 88877 4453 55777776
Q ss_pred H
Q 032978 118 I 118 (130)
Q Consensus 118 i 118 (130)
+
T Consensus 75 l 75 (76)
T TIGR00412 75 L 75 (76)
T ss_pred h
Confidence 5
No 78
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.59 E-value=6.9e-14 Score=88.58 Aligned_cols=108 Identities=16% Similarity=0.167 Sum_probs=89.3
Q ss_pred CeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcC--CChhhhhhhHHHHHHHHhCC-C-eEEEEEeccCcHhHHHhcCC
Q 032978 13 RVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAI--WCMPSVAMNPLFEELASAYP-D-VLFLSVDVDDVKDVASKLEV 88 (130)
Q Consensus 13 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~--~C~~C~~~~~~l~~l~~~~~-~-v~~~~vd~~~~~~~~~~~~v 88 (130)
....+ +..+++..+.. +... +|+|-+. .++.+....=+|++++++|+ + +.|++||++++++++.+|+|
T Consensus 18 g~~~~-~~~~~~~~~~~----~~~~---vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV 89 (132)
T PRK11509 18 GWTPV-SESRLDDWLTQ----APDG---VVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGV 89 (132)
T ss_pred CCCcc-ccccHHHHHhC----CCcE---EEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCC
Confidence 34445 55777777764 3344 4545443 47888888889999999996 4 99999999999999999999
Q ss_pred CCCCEEEEeeCCeEEeeEecC-CHHHHHHHHHHHhhhhccc
Q 032978 89 KAMPTFLLMREGAVVDKLVGA-NPEEIRKRIDSFVQSIRVY 128 (130)
Q Consensus 89 ~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~~~ 128 (130)
.++||+++|++|+.+....|. +.+++.++|++++....+.
T Consensus 90 ~siPTLl~FkdGk~v~~i~G~~~k~~l~~~I~~~L~~~~~~ 130 (132)
T PRK11509 90 FRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQQER 130 (132)
T ss_pred ccCCEEEEEECCEEEEEEeCcCCHHHHHHHHHHHhcCcCcc
Confidence 999999999999999999998 8899999999999876654
No 79
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.59 E-value=1.4e-14 Score=81.90 Aligned_cols=61 Identities=18% Similarity=0.300 Sum_probs=55.3
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCCCCCCEEEEeeCCeEE
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVV 103 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~ 103 (130)
++.||++||++|+.+.+.+++++..++++.+..+|.+++++++.+|++.++|++++ +|+.+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~~ 63 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKVE 63 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEE--CCEEE
Confidence 67899999999999999999998888889999999999999999999999999866 55544
No 80
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.59 E-value=5.3e-14 Score=88.76 Aligned_cols=91 Identities=14% Similarity=0.149 Sum_probs=67.7
Q ss_pred HHhhcCCCceEeEEeEEEcCCChhhhhhhHH-H--HHHHHhC-CCeEEEEEeccCcHhHHH--------hcCCCCCCEEE
Q 032978 28 SQANNQGCPVRNVVVHFTAIWCMPSVAMNPL-F--EELASAY-PDVLFLSVDVDDVKDVAS--------KLEVKAMPTFL 95 (130)
Q Consensus 28 ~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~-l--~~l~~~~-~~v~~~~vd~~~~~~~~~--------~~~v~~~P~~~ 95 (130)
..+..++|++ +|+|+++||+.|+.+.+. + .++++.. .++.++.+|.++.+++.+ .|++.++|+++
T Consensus 9 ~~Ak~~~KpV---ll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~v 85 (124)
T cd02955 9 EKARREDKPI---FLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNV 85 (124)
T ss_pred HHHHHcCCeE---EEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEE
Confidence 3333378999 999999999999999873 2 3455443 579999999998887765 35899999999
Q ss_pred Ee-eCCeEEeeEecC------CHHHHHHHHHHH
Q 032978 96 LM-REGAVVDKLVGA------NPEEIRKRIDSF 121 (130)
Q Consensus 96 ~~-~~g~~~~~~~g~------~~~~l~~~i~~~ 121 (130)
++ .+|+.+....+. +...+.+++++.
T Consensus 86 fl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (124)
T cd02955 86 FLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKI 118 (124)
T ss_pred EECCCCCEEeeeeecCCCCcCCCcCHHHHHHHH
Confidence 99 789998766655 123566665554
No 81
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.58 E-value=2e-14 Score=93.00 Aligned_cols=71 Identities=14% Similarity=0.364 Sum_probs=58.7
Q ss_pred cCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC---------CCeEEEEEeccCc-----------------------
Q 032978 32 NQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY---------PDVLFLSVDVDDV----------------------- 79 (130)
Q Consensus 32 ~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~---------~~v~~~~vd~~~~----------------------- 79 (130)
++++++ +|+|||+||++|+.+.|.|.++.+++ .++.++.|+.+..
T Consensus 23 ~kgk~v---lL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~ 99 (146)
T cd03008 23 LENRVL---LLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDE 99 (146)
T ss_pred hCCCEE---EEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccch
Confidence 378999 99999999999999999999987654 1588888886642
Q ss_pred --HhHHHhcCCCCCCEEEEe-eCCeEEee
Q 032978 80 --KDVASKLEVKAMPTFLLM-REGAVVDK 105 (130)
Q Consensus 80 --~~~~~~~~v~~~P~~~~~-~~g~~~~~ 105 (130)
..+.+.|++.++|+.+++ ++|+.+.+
T Consensus 100 ~~~~l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 100 FRRELEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHHHHHcCCCCCCEEEEECCCCcEEee
Confidence 146778999999998888 68888875
No 82
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.58 E-value=2.2e-14 Score=86.35 Aligned_cols=65 Identities=34% Similarity=0.658 Sum_probs=53.9
Q ss_pred CCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCC---CeEEEEEeccCc-------------------------HhHHHh
Q 032978 34 GCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYP---DVLFLSVDVDDV-------------------------KDVASK 85 (130)
Q Consensus 34 ~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~---~v~~~~vd~~~~-------------------------~~~~~~ 85 (130)
|+++ +|+||++||++|++..|.|.++.++++ ++.|+.|+.++. ..+.+.
T Consensus 1 gK~~---ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 77 (95)
T PF13905_consen 1 GKPV---LLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKK 77 (95)
T ss_dssp TSEE---EEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHH
T ss_pred CCEE---EEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHH
Confidence 5788 999999999999999999999999997 699999987753 257889
Q ss_pred cCCCCCCEEEEe-eCCe
Q 032978 86 LEVKAMPTFLLM-REGA 101 (130)
Q Consensus 86 ~~v~~~P~~~~~-~~g~ 101 (130)
|++.++|+++++ ++|+
T Consensus 78 ~~i~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 78 YGINGIPTLVLLDPDGK 94 (95)
T ss_dssp TT-TSSSEEEEEETTSB
T ss_pred CCCCcCCEEEEECCCCC
Confidence 999999998888 5565
No 83
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.58 E-value=6.4e-14 Score=83.63 Aligned_cols=75 Identities=17% Similarity=0.269 Sum_probs=65.0
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCCCCCCEEEEeeCCeEEeeEecC-CH
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGA-NP 111 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~ 111 (130)
.+... +..|+++||++|....+.++++++.++++.+..+|.++.++++.+|+|.++|++++ +|+.+.. |. +.
T Consensus 11 ~~pv~---i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~~--G~~~~ 83 (89)
T cd03026 11 NGPIN---FETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFGF--GRMTL 83 (89)
T ss_pred CCCEE---EEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEEe--CCCCH
Confidence 45555 88999999999999999999999999999999999999999999999999999975 7887775 54 44
Q ss_pred HHH
Q 032978 112 EEI 114 (130)
Q Consensus 112 ~~l 114 (130)
+++
T Consensus 84 ~e~ 86 (89)
T cd03026 84 EEI 86 (89)
T ss_pred HHH
Confidence 443
No 84
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.54 E-value=1.8e-13 Score=90.60 Aligned_cols=86 Identities=28% Similarity=0.578 Sum_probs=73.5
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCC--CeEEEEEeccC----------------------cHhHHHhcCC
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYP--DVLFLSVDVDD----------------------VKDVASKLEV 88 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~--~v~~~~vd~~~----------------------~~~~~~~~~v 88 (130)
.++++ +|+||++||+.|+...+.+.++.++++ ++.++.|+.+. ...+.+.|++
T Consensus 60 ~~k~~---~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 136 (173)
T PRK03147 60 KGKGV---FLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGV 136 (173)
T ss_pred CCCEE---EEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCC
Confidence 67889 999999999999999999999999884 48888888653 3567889999
Q ss_pred CCCCEEEEe-eCCeEEeeEecC-CHHHHHHHHHHH
Q 032978 89 KAMPTFLLM-REGAVVDKLVGA-NPEEIRKRIDSF 121 (130)
Q Consensus 89 ~~~P~~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~ 121 (130)
.++|+++++ ++|+.+..+.|. +.+++.++++++
T Consensus 137 ~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 137 GPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 999987777 688888887887 888888888765
No 85
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.54 E-value=3e-14 Score=100.23 Aligned_cols=98 Identities=29% Similarity=0.533 Sum_probs=84.5
Q ss_pred hhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC----C--CeEEEEEeccCcHhHHHhcCCCCCCE
Q 032978 20 VESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY----P--DVLFLSVDVDDVKDVASKLEVKAMPT 93 (130)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~----~--~v~~~~vd~~~~~~~~~~~~v~~~P~ 93 (130)
..+++.++. .+..+ +|.||++||+.++.+.|.+++.++++ | .+.+..||++++..++.+|.|..+||
T Consensus 3 ~~N~~~il~----s~elv---fv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPT 75 (375)
T KOG0912|consen 3 SENIDSILD----SNELV---FVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPT 75 (375)
T ss_pred cccHHHhhc----cceEE---eeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCce
Confidence 345666666 46899 99999999999999999999988765 4 49999999999999999999999999
Q ss_pred EEEeeCCeEEe-eEecC-CHHHHHHHHHHHhhh
Q 032978 94 FLLMREGAVVD-KLVGA-NPEEIRKRIDSFVQS 124 (130)
Q Consensus 94 ~~~~~~g~~~~-~~~g~-~~~~l~~~i~~~~~~ 124 (130)
+-++++|.+.. .+-|. +.+.|.++|++.+..
T Consensus 76 lKvfrnG~~~~rEYRg~RsVeaL~efi~kq~s~ 108 (375)
T KOG0912|consen 76 LKVFRNGEMMKREYRGQRSVEALIEFIEKQLSD 108 (375)
T ss_pred eeeeeccchhhhhhccchhHHHHHHHHHHHhcc
Confidence 99999998876 44566 889999999988654
No 86
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.53 E-value=6.2e-14 Score=89.37 Aligned_cols=71 Identities=25% Similarity=0.483 Sum_probs=57.9
Q ss_pred cCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCC----CeEEEEEeccCc-------------------------HhH
Q 032978 32 NQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYP----DVLFLSVDVDDV-------------------------KDV 82 (130)
Q Consensus 32 ~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~----~v~~~~vd~~~~-------------------------~~~ 82 (130)
.+++++ +|+||++||++|+...|.++++.+++. ++.++.|+.+.. ..+
T Consensus 15 ~~Gk~v---ll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 91 (132)
T cd02964 15 LEGKTV---GLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELL 91 (132)
T ss_pred hCCCEE---EEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHH
Confidence 378999 999999999999999999999987762 577777776543 245
Q ss_pred HHhcCCCCCCEEEEe-eCCeEEee
Q 032978 83 ASKLEVKAMPTFLLM-REGAVVDK 105 (130)
Q Consensus 83 ~~~~~v~~~P~~~~~-~~g~~~~~ 105 (130)
.+.|++.++|+++++ ++|+.+.+
T Consensus 92 ~~~~~v~~iPt~~lid~~G~iv~~ 115 (132)
T cd02964 92 EKQFKVEGIPTLVVLKPDGDVVTT 115 (132)
T ss_pred HHHcCCCCCCEEEEECCCCCEEch
Confidence 567999999999988 57877764
No 87
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.53 E-value=4.1e-13 Score=83.58 Aligned_cols=100 Identities=18% Similarity=0.304 Sum_probs=81.0
Q ss_pred hhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHH-H--HHHHHhC-CCeEEEEEecc--CcHhHHHhcCCCCCCEE
Q 032978 21 ESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPL-F--EELASAY-PDVLFLSVDVD--DVKDVASKLEVKAMPTF 94 (130)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~-l--~~l~~~~-~~v~~~~vd~~--~~~~~~~~~~v~~~P~~ 94 (130)
.+|++++..+..+++++ +|+|+++||++|+.+... | +.+.+.. .+..++.+|.+ +...++..|++.++|++
T Consensus 4 gs~~~a~~~Ak~~~K~l---lv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~ 80 (114)
T cd02958 4 GSFEDAKQEAKSEKKWL---LVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHI 80 (114)
T ss_pred CCHHHHHHHHHhhCceE---EEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeE
Confidence 45778888887789999 999999999999998763 3 2233333 36888888887 45678899999999999
Q ss_pred EEe-e-CCeEEeeEecC-CHHHHHHHHHHHhh
Q 032978 95 LLM-R-EGAVVDKLVGA-NPEEIRKRIDSFVQ 123 (130)
Q Consensus 95 ~~~-~-~g~~~~~~~g~-~~~~l~~~i~~~~~ 123 (130)
+++ . +|+.+.+..|. +++++.+.+++...
T Consensus 81 ~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 81 AIIDPRTGEVLKVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred EEEeCccCcEeEEEcCCCCHHHHHHHHHHHHh
Confidence 999 4 79999999999 89999998888754
No 88
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.53 E-value=2.7e-13 Score=90.29 Aligned_cols=84 Identities=23% Similarity=0.314 Sum_probs=67.6
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCc-------------HhHHHhcCC--CCCCEEEEe-eCCeEE-
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDV-------------KDVASKLEV--KAMPTFLLM-REGAVV- 103 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~-------------~~~~~~~~v--~~~P~~~~~-~~g~~~- 103 (130)
+|+||++||++|++..|.+++++++| ++.++.|+.+.. ..+...|++ .++|+.+++ ++|+..
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~-g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY-GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc-CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 45699999999999999999999998 577777776532 235668885 699987777 788875
Q ss_pred eeEecC-CHHHHHHHHHHHhhhh
Q 032978 104 DKLVGA-NPEEIRKRIDSFVQSI 125 (130)
Q Consensus 104 ~~~~g~-~~~~l~~~i~~~~~~~ 125 (130)
..+.|. +.++|.+.++++++..
T Consensus 152 ~~~~G~~~~~~L~~~I~~ll~~~ 174 (181)
T PRK13728 152 PLLQGATDAAGFMARMDTVLQMY 174 (181)
T ss_pred EEEECCCCHHHHHHHHHHHHhhh
Confidence 567788 8999999999987653
No 89
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.53 E-value=1.2e-13 Score=87.75 Aligned_cols=70 Identities=23% Similarity=0.505 Sum_probs=58.0
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC----CCeEEEEEeccCc------------------------HhHHH
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY----PDVLFLSVDVDDV------------------------KDVAS 84 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~----~~v~~~~vd~~~~------------------------~~~~~ 84 (130)
+++++ +|+||++||++|+...|.+.++.+++ +++.++.|+.+.. ..+++
T Consensus 17 ~gk~v---ll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (131)
T cd03009 17 EGKTV---GLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNR 93 (131)
T ss_pred CCcEE---EEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHH
Confidence 78999 99999999999999999999988776 2577777776533 35678
Q ss_pred hcCCCCCCEEEEe-eCCeEEee
Q 032978 85 KLEVKAMPTFLLM-REGAVVDK 105 (130)
Q Consensus 85 ~~~v~~~P~~~~~-~~g~~~~~ 105 (130)
.|++.++|+++++ ++|+.+.+
T Consensus 94 ~~~v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 94 TFKIEGIPTLIILDADGEVVTT 115 (131)
T ss_pred HcCCCCCCEEEEECCCCCEEcc
Confidence 8999999999999 58887764
No 90
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.53 E-value=1.5e-13 Score=112.22 Aligned_cols=88 Identities=22% Similarity=0.401 Sum_probs=75.8
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCC--CeEEEEEec---------------------------cCcHhHH
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYP--DVLFLSVDV---------------------------DDVKDVA 83 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~--~v~~~~vd~---------------------------~~~~~~~ 83 (130)
+++++ ||+||++||++|+...|.|+++.++|+ ++.++.|.. +....+.
T Consensus 419 kGK~v---ll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~ 495 (1057)
T PLN02919 419 KGKVV---ILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLW 495 (1057)
T ss_pred CCCEE---EEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHH
Confidence 78999 999999999999999999999999994 477777741 2234677
Q ss_pred HhcCCCCCCEEEEe-eCCeEEeeEecC-CHHHHHHHHHHHhh
Q 032978 84 SKLEVKAMPTFLLM-REGAVVDKLVGA-NPEEIRKRIDSFVQ 123 (130)
Q Consensus 84 ~~~~v~~~P~~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~ 123 (130)
++|++.++|+++++ ++|+.+.++.|. ..+.|.+++++++.
T Consensus 496 ~~~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 496 RELGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred HhcCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 89999999999999 799999999998 78999999998865
No 91
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.50 E-value=2.9e-13 Score=82.92 Aligned_cols=73 Identities=38% Similarity=0.651 Sum_probs=65.2
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC--CCeEEEEEeccCc-----------------------HhHHHhcC
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDDV-----------------------KDVASKLE 87 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~~-----------------------~~~~~~~~ 87 (130)
.++++ +|+||++||+.|+...+.+.++.+++ +++.++.|+.+.. ..+.+.|+
T Consensus 18 ~~k~~---ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (116)
T cd02966 18 KGKVV---LVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYG 94 (116)
T ss_pred CCCEE---EEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcC
Confidence 57899 99999999999999999999999998 6799999999885 67889999
Q ss_pred CCCCCEEEEe-eCCeEEeeEec
Q 032978 88 VKAMPTFLLM-REGAVVDKLVG 108 (130)
Q Consensus 88 v~~~P~~~~~-~~g~~~~~~~g 108 (130)
+.++|+++++ ++|+.+..+.|
T Consensus 95 ~~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 95 VRGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cCccceEEEECCCCcEEEEecC
Confidence 9999998888 68888877654
No 92
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=2.2e-13 Score=100.86 Aligned_cols=100 Identities=26% Similarity=0.452 Sum_probs=81.8
Q ss_pred hhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCC-eEEEEEeccCcHhHHHhcCCCCCCEEEEee
Q 032978 20 VESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPD-VLFLSVDVDDVKDVASKLEVKAMPTFLLMR 98 (130)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~ 98 (130)
...+...+.. .++.. +|.||++||++|+++.|.++++++.+.+ +.+..||++.+.+++.+|+|+++||+.++.
T Consensus 36 ~~~~~~~~~~---~~~~~---~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~ 109 (383)
T KOG0191|consen 36 LDSFFDFLLK---DDSPW---LVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFR 109 (383)
T ss_pred ccccHHHhhc---cCCce---EEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEc
Confidence 3444444433 56788 9999999999999999999999998854 999999999999999999999999999998
Q ss_pred CCeEEeeEecC-CHHHHHHHHHHHhhhh
Q 032978 99 EGAVVDKLVGA-NPEEIRKRIDSFVQSI 125 (130)
Q Consensus 99 ~g~~~~~~~g~-~~~~l~~~i~~~~~~~ 125 (130)
.|.....+.|. +.+.+..++...+...
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (383)
T KOG0191|consen 110 PGKKPIDYSGPRNAESLAEFLIKELEPS 137 (383)
T ss_pred CCCceeeccCcccHHHHHHHHHHhhccc
Confidence 88433334445 8889998888776543
No 93
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.49 E-value=6.3e-13 Score=83.43 Aligned_cols=81 Identities=27% Similarity=0.485 Sum_probs=63.1
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEec---------------------cCcHhHHHhcCCCCC
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDV---------------------DDVKDVASKLEVKAM 91 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~---------------------~~~~~~~~~~~v~~~ 91 (130)
.++++ +|+||++||++|+.+.+.+.++++++. +..+.+|- +.+..++++|++.++
T Consensus 19 ~~k~~---vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~ 94 (123)
T cd03011 19 SGKPV---LVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVT 94 (123)
T ss_pred CCCEE---EEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcc
Confidence 66899 999999999999999999999987752 32222221 234578999999999
Q ss_pred CEEEEeeCCeEEeeEecC-CHHHHHHH
Q 032978 92 PTFLLMREGAVVDKLVGA-NPEEIRKR 117 (130)
Q Consensus 92 P~~~~~~~g~~~~~~~g~-~~~~l~~~ 117 (130)
|+++++.+++....+.|. +.+.|.+.
T Consensus 95 P~~~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 95 PAIVIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred cEEEEEcCCCeEEEEeccCCHHHHHhh
Confidence 999999655577888887 77877654
No 94
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.48 E-value=2.7e-13 Score=95.55 Aligned_cols=107 Identities=23% Similarity=0.373 Sum_probs=81.8
Q ss_pred cCCCeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCCC
Q 032978 10 NKSRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVK 89 (130)
Q Consensus 10 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~ 89 (130)
..+.+.+|.+.+.|-..+.... ++..| ||.||.+.++.|..+...|..|+.+|+.++|++|..+..+ +...|...
T Consensus 123 ~fG~v~ei~~~e~~l~~ie~~~-~~~~V---VVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f~~~ 197 (265)
T PF02114_consen 123 RFGEVYEIDSGEEFLDAIEKES-KSTWV---VVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-ASENFPDK 197 (265)
T ss_dssp ---SEEE--SHHHHHHHCCTSS-TT-EE---EEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS-TT
T ss_pred cCceEEEccChhhHHHHHhccC-CCcEE---EEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-cccCCccc
Confidence 4678899977788888776431 34567 9999999999999999999999999999999999998876 77889999
Q ss_pred CCCEEEEeeCCeEEeeEecC--------CHHHHHHHHHHH
Q 032978 90 AMPTFLLMREGAVVDKLVGA--------NPEEIRKRIDSF 121 (130)
Q Consensus 90 ~~P~~~~~~~g~~~~~~~g~--------~~~~l~~~i~~~ 121 (130)
.+|++++|++|..+..+.|. +...|+.++.++
T Consensus 198 ~LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 198 NLPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp C-SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred CCCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 99999999999999888765 245677666654
No 95
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=7.3e-14 Score=105.14 Aligned_cols=106 Identities=21% Similarity=0.386 Sum_probs=81.6
Q ss_pred cCCCeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC----CCeEEEEEecc--CcHhHH
Q 032978 10 NKSRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY----PDVLFLSVDVD--DVKDVA 83 (130)
Q Consensus 10 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~----~~v~~~~vd~~--~~~~~~ 83 (130)
+.++++.+ +.++|..++... .+.. +|.||++||++|+.+.|.++++++.. +-|.++.|||. .|..+|
T Consensus 37 ~~D~ii~L-d~~tf~~~v~~~---~~~~---lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lC 109 (606)
T KOG1731|consen 37 PDDPIIEL-DVDTFNAAVFGS---RKAK---LVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLC 109 (606)
T ss_pred CCCCeEEe-ehhhhHHHhccc---chhH---HHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhH
Confidence 45789999 999999999874 3566 88999999999999999999999875 34899999986 577899
Q ss_pred HhcCCCCCCEEEEeeCCeEE----eeEecC-CHHHHHHHHHHHh
Q 032978 84 SKLEVKAMPTFLLMREGAVV----DKLVGA-NPEEIRKRIDSFV 122 (130)
Q Consensus 84 ~~~~v~~~P~~~~~~~g~~~----~~~~g~-~~~~l~~~i~~~~ 122 (130)
++|+|+++|++.+|+.+..- ..+.|. .+.++.+.+.+.+
T Consensus 110 Ref~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~l 153 (606)
T KOG1731|consen 110 REFSVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTL 153 (606)
T ss_pred hhcCCCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHH
Confidence 99999999999999433211 222233 3455555555544
No 96
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.45 E-value=1.4e-12 Score=82.47 Aligned_cols=74 Identities=18% Similarity=0.322 Sum_probs=61.9
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCC--CeEEEEEecc---------------------------CcHhHH
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYP--DVLFLSVDVD---------------------------DVKDVA 83 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~--~v~~~~vd~~---------------------------~~~~~~ 83 (130)
+++++ +|+||++||++|+...|.|+++.+++. ++.++.|+.+ ....+.
T Consensus 22 ~gk~v---vl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~ 98 (126)
T cd03012 22 RGKVV---LLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATW 98 (126)
T ss_pred CCCEE---EEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHH
Confidence 67999 999999999999999999999999994 5888888541 123567
Q ss_pred HhcCCCCCCEEEEe-eCCeEEeeEecC
Q 032978 84 SKLEVKAMPTFLLM-REGAVVDKLVGA 109 (130)
Q Consensus 84 ~~~~v~~~P~~~~~-~~g~~~~~~~g~ 109 (130)
+.|++.++|+.+++ ++|+.+..+.|.
T Consensus 99 ~~~~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 99 RAYGNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred HHhCCCcCCeEEEECCCCcEEEEEecC
Confidence 78999999998888 689999887764
No 97
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.45 E-value=8.8e-13 Score=89.65 Aligned_cols=91 Identities=19% Similarity=0.271 Sum_probs=69.7
Q ss_pred cCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC--CCeEEEEEecc-------C----cHhHHHhcCC----------
Q 032978 32 NQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVD-------D----VKDVASKLEV---------- 88 (130)
Q Consensus 32 ~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~-------~----~~~~~~~~~v---------- 88 (130)
.+++++ +|.||++||++|+...|.|.++.++| .++.|+.|+++ . ...+++++++
T Consensus 37 ~kGkvv---lv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v 113 (199)
T PTZ00056 37 LKNKVL---MITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEV 113 (199)
T ss_pred hCCCEE---EEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeec
Confidence 378999 99999999999999999999999998 36999999753 1 1223333332
Q ss_pred --------------------------CCCC----EEEEeeCCeEEeeEecC-CHHHHHHHHHHHhhhh
Q 032978 89 --------------------------KAMP----TFLLMREGAVVDKLVGA-NPEEIRKRIDSFVQSI 125 (130)
Q Consensus 89 --------------------------~~~P----~~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~~ 125 (130)
..+| ++++-++|+.+.++.|. +.+.+.+.|++++++.
T Consensus 114 ~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~~~ 181 (199)
T PTZ00056 114 NGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLGVK 181 (199)
T ss_pred cCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 1223 45555999999999888 7889999999988764
No 98
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.45 E-value=5e-13 Score=101.29 Aligned_cols=103 Identities=20% Similarity=0.408 Sum_probs=86.2
Q ss_pred EEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHH---HHHHhCCCeEEEEEeccCc----HhHHHhcC
Q 032978 15 VKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFE---ELASAYPDVLFLSVDVDDV----KDVASKLE 87 (130)
Q Consensus 15 ~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~---~l~~~~~~v~~~~vd~~~~----~~~~~~~~ 87 (130)
..+.+..++++.++++ ++++| +|+||++||-.||.+.+..- +...+.++++..+.|.+++ .++.++||
T Consensus 457 q~~s~~~~L~~~la~~--~~~pV---mlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~ 531 (569)
T COG4232 457 QPISPLAELDQALAEA--KAKPV---MLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLG 531 (569)
T ss_pred hccCCHHHHHHHHHhC--CCCcE---EEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcC
Confidence 6676666999999987 66899 99999999999999988542 3344458999999999864 46788999
Q ss_pred CCCCCEEEEee-CCeEEeeEecC-CHHHHHHHHHHHh
Q 032978 88 VKAMPTFLLMR-EGAVVDKLVGA-NPEEIRKRIDSFV 122 (130)
Q Consensus 88 v~~~P~~~~~~-~g~~~~~~~g~-~~~~l~~~i~~~~ 122 (130)
+-+.|++++|. +|++.....|. +.+.+.+++++..
T Consensus 532 ~~G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 532 VFGVPTYLFFGPQGSEPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred CCCCCEEEEECCCCCcCcCCcceecHHHHHHHHHHhc
Confidence 99999999995 88888778888 9999999998763
No 99
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.43 E-value=2.4e-12 Score=83.13 Aligned_cols=75 Identities=39% Similarity=0.647 Sum_probs=64.2
Q ss_pred CCCceEeEEeEEEcC-CChhhhhhhHHHHHHHHhC--CCeEEEEEeccCc---------------------HhHHHhcCC
Q 032978 33 QGCPVRNVVVHFTAI-WCMPSVAMNPLFEELASAY--PDVLFLSVDVDDV---------------------KDVASKLEV 88 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~-~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~~---------------------~~~~~~~~v 88 (130)
+++++ +|.||++ ||++|+...|.+.++.+.| .++.++.|..+.. ..+.++|++
T Consensus 27 ~gk~~---vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 103 (146)
T PF08534_consen 27 KGKPV---VVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGV 103 (146)
T ss_dssp TTSEE---EEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTC
T ss_pred CCCeE---EEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCC
Confidence 78999 9999999 9999999999999998886 4688888875542 367889998
Q ss_pred C---------CCCEEEEe-eCCeEEeeEecCC
Q 032978 89 K---------AMPTFLLM-REGAVVDKLVGAN 110 (130)
Q Consensus 89 ~---------~~P~~~~~-~~g~~~~~~~g~~ 110 (130)
. ++|+++++ ++|+++....|..
T Consensus 104 ~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~ 135 (146)
T PF08534_consen 104 TIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPD 135 (146)
T ss_dssp EEECCTTTTSSSSEEEEEETTSBEEEEEESSB
T ss_pred ccccccccCCeecEEEEEECCCEEEEEEeCCC
Confidence 8 99987666 8999999999883
No 100
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.41 E-value=2.4e-12 Score=79.71 Aligned_cols=69 Identities=17% Similarity=0.310 Sum_probs=53.0
Q ss_pred CCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC-CCeEEEEEecc---C-----------------cHhHHHhcCCCCCC
Q 032978 34 GCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY-PDVLFLSVDVD---D-----------------VKDVASKLEVKAMP 92 (130)
Q Consensus 34 ~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~~v~~~~vd~~---~-----------------~~~~~~~~~v~~~P 92 (130)
++++ +|+||++||++|+...|.++++.+++ .++.++.+.-+ + ..++.+.|++.++|
T Consensus 21 gk~v---vl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P 97 (114)
T cd02967 21 GRPT---LLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLP 97 (114)
T ss_pred CCeE---EEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcC
Confidence 7899 99999999999999999999998887 45666655211 1 12566778888899
Q ss_pred EEEEe-eCCeEEee
Q 032978 93 TFLLM-REGAVVDK 105 (130)
Q Consensus 93 ~~~~~-~~g~~~~~ 105 (130)
+.+++ ++|+.+.+
T Consensus 98 ~~~vid~~G~v~~~ 111 (114)
T cd02967 98 YAVLLDEAGVIAAK 111 (114)
T ss_pred eEEEECCCCeEEec
Confidence 87777 57776654
No 101
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.40 E-value=5.5e-12 Score=85.12 Aligned_cols=85 Identities=18% Similarity=0.300 Sum_probs=64.2
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEecc--------------------CcHhHHHhcCCCCCC
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVD--------------------DVKDVASKLEVKAMP 92 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~--------------------~~~~~~~~~~v~~~P 92 (130)
+++++ +|+||++||+.|+...|.+.++.+++ ++.++.++.+ ...++.+.|++..+|
T Consensus 73 ~gk~v---vl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P 148 (189)
T TIGR02661 73 PGRPT---LLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIP 148 (189)
T ss_pred CCCEE---EEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccc
Confidence 67899 99999999999999999999998775 3444444321 134677899999999
Q ss_pred EEEEe-eCCeEEeeEecCCHHHHHHHHHHH
Q 032978 93 TFLLM-REGAVVDKLVGANPEEIRKRIDSF 121 (130)
Q Consensus 93 ~~~~~-~~g~~~~~~~g~~~~~l~~~i~~~ 121 (130)
+.+++ ++|+..........+.+++.++..
T Consensus 149 ~~~lID~~G~I~~~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 149 YGVLLDQDGKIRAKGLTNTREHLESLLEAD 178 (189)
T ss_pred eEEEECCCCeEEEccCCCCHHHHHHHHHHH
Confidence 86666 788887763333667888888765
No 102
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=3.4e-12 Score=94.54 Aligned_cols=104 Identities=24% Similarity=0.399 Sum_probs=89.0
Q ss_pred eEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC---CCeEEEEEeccCcHhHHHhcCCCC
Q 032978 14 VVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY---PDVLFLSVDVDDVKDVASKLEVKA 90 (130)
Q Consensus 14 v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~---~~v~~~~vd~~~~~~~~~~~~v~~ 90 (130)
+.++ +.+.+...+.. .+... +|.||+|||++|+.+.+.+++++..+ ..+.+..+|++....++.+++|++
T Consensus 146 v~~l-~~~~~~~~~~~---~~~~~---lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~ 218 (383)
T KOG0191|consen 146 VFEL-TKDNFDETVKD---SDADW---LVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRG 218 (383)
T ss_pred eEEc-cccchhhhhhc---cCcce---EEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccC
Confidence 7777 77778777776 45666 99999999999999999999999877 459999999998999999999999
Q ss_pred CCEEEEeeCCeE-EeeEecC-CHHHHHHHHHHHhhh
Q 032978 91 MPTFLLMREGAV-VDKLVGA-NPEEIRKRIDSFVQS 124 (130)
Q Consensus 91 ~P~~~~~~~g~~-~~~~~g~-~~~~l~~~i~~~~~~ 124 (130)
+|++++|++|.. .....+. +.+.+..|+......
T Consensus 219 ~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 219 YPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERR 254 (383)
T ss_pred CceEEEecCCCcccccccccccHHHHHHHHHhhcCC
Confidence 999999988877 5555555 899999999988665
No 103
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.36 E-value=1.6e-11 Score=85.27 Aligned_cols=88 Identities=19% Similarity=0.307 Sum_probs=68.4
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC--CCeEEEEEeccC-----------cHhHH-HhcC-----------
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDD-----------VKDVA-SKLE----------- 87 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~-----------~~~~~-~~~~----------- 87 (130)
+++++ ||+||++||+.|+...|.|.++.++| .++.++.|+++. ...++ ++++
T Consensus 98 kGK~v---vl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~ 174 (236)
T PLN02399 98 KGKVL---LIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDV 174 (236)
T ss_pred CCCeE---EEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCC
Confidence 78999 99999999999999999999999998 358999888631 11222 1211
Q ss_pred -----------------------CCCCCEEEEe-eCCeEEeeEecC-CHHHHHHHHHHHhh
Q 032978 88 -----------------------VKAMPTFLLM-REGAVVDKLVGA-NPEEIRKRIDSFVQ 123 (130)
Q Consensus 88 -----------------------v~~~P~~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~ 123 (130)
+...|+.+++ ++|+.+.++.|. ++++|++.|+++++
T Consensus 175 ~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 175 NGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred CcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 1234765555 899999999998 88999999999874
No 104
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.35 E-value=1.3e-11 Score=82.64 Aligned_cols=82 Identities=21% Similarity=0.178 Sum_probs=63.2
Q ss_pred cCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEE------EEEeccC---------------------------
Q 032978 32 NQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLF------LSVDVDD--------------------------- 78 (130)
Q Consensus 32 ~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~------~~vd~~~--------------------------- 78 (130)
..||+. +|.||++||++|+...|.++.+..+ ++.+ .-||.++
T Consensus 57 l~GKV~---lvn~~Aswc~~c~~e~P~l~~l~~~--~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vll 131 (184)
T TIGR01626 57 LAGKVR---VVHHIAGRTSAKEXNASLIDAIKAA--KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVL 131 (184)
T ss_pred cCCCEE---EEEEEecCCChhhccchHHHHHHHc--CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEE
Confidence 379999 9999999999999999999999764 3444 4455443
Q ss_pred --cHhHHHhcCCCCCCEE--EEeeCCeEEeeEecC-CHHHHHHHH
Q 032978 79 --VKDVASKLEVKAMPTF--LLMREGAVVDKLVGA-NPEEIRKRI 118 (130)
Q Consensus 79 --~~~~~~~~~v~~~P~~--~~~~~g~~~~~~~g~-~~~~l~~~i 118 (130)
...+...|++.++|+. ++-++|+....+.|. +.+++.+.+
T Consensus 132 D~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 132 DDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred CCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 2245678999999754 444899999999999 777776633
No 105
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.34 E-value=6.3e-12 Score=79.60 Aligned_cols=85 Identities=18% Similarity=0.255 Sum_probs=59.1
Q ss_pred hhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHH---HHHHHhC-CCeEEEEEeccCcHhHHHhcCCCCCCEEEE
Q 032978 21 ESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLF---EELASAY-PDVLFLSVDVDDVKDVASKLEVKAMPTFLL 96 (130)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l---~~l~~~~-~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~ 96 (130)
.+|++.+..+..++|++ +|+|+++||++|+.+...+ .++.+.. .+...+.++.+....-....+ .++|+++|
T Consensus 10 ~~~eeal~~Ak~~~Kpv---mv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPtivF 85 (130)
T cd02960 10 QTYEEGLYKAKKSNKPL---MVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRIMF 85 (130)
T ss_pred hhHHHHHHHHHHCCCeE---EEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeEEE
Confidence 36888888887799999 9999999999999998854 2233322 256655666552211111233 68999999
Q ss_pred e-eCCeEEeeEecC
Q 032978 97 M-REGAVVDKLVGA 109 (130)
Q Consensus 97 ~-~~g~~~~~~~g~ 109 (130)
+ .+|+.+.+..|.
T Consensus 86 ld~~g~vi~~i~Gy 99 (130)
T cd02960 86 VDPSLTVRADITGR 99 (130)
T ss_pred ECCCCCCccccccc
Confidence 9 778887766665
No 106
>PLN02412 probable glutathione peroxidase
Probab=99.32 E-value=2.8e-11 Score=80.13 Aligned_cols=89 Identities=19% Similarity=0.292 Sum_probs=69.1
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC--CCeEEEEEecc--------CcHhH----HHhcC-----------
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVD--------DVKDV----ASKLE----------- 87 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~--------~~~~~----~~~~~----------- 87 (130)
+++++ ||+||++||+.|+...+.|.++.++| .++.++.|+.+ ...++ .++++
T Consensus 28 ~gk~v---lv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~ 104 (167)
T PLN02412 28 KGKVL---LIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDV 104 (167)
T ss_pred CCCEE---EEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEee
Confidence 78999 99999999999999999999999999 36999998753 11111 11111
Q ss_pred -----------------------CCCCCEEEEe-eCCeEEeeEecC-CHHHHHHHHHHHhhh
Q 032978 88 -----------------------VKAMPTFLLM-REGAVVDKLVGA-NPEEIRKRIDSFVQS 124 (130)
Q Consensus 88 -----------------------v~~~P~~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~ 124 (130)
+...|+.+++ ++|+.+.++.|. +.+.|+..|+.++..
T Consensus 105 ~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~~ 166 (167)
T PLN02412 105 NGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLGQ 166 (167)
T ss_pred CCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence 3335775666 899999999999 889999999998764
No 107
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.31 E-value=6.3e-11 Score=78.56 Aligned_cols=93 Identities=24% Similarity=0.420 Sum_probs=74.0
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCC--CeEEEEEeccC-----------------------------cHh
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYP--DVLFLSVDVDD-----------------------------VKD 81 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~--~v~~~~vd~~~-----------------------------~~~ 81 (130)
.++++ ||+||++||+.|....+.+.++.++++ ++.|+.|+.+. ...
T Consensus 24 ~~k~~---ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~ 100 (171)
T cd02969 24 DGKAL---VVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQE 100 (171)
T ss_pred CCCEE---EEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchH
Confidence 57889 999999999999999999999999984 69999987653 125
Q ss_pred HHHhcCCCCCCEEEEe-eCCeEEeeEe------c----CCHHHHHHHHHHHhhhhccc
Q 032978 82 VASKLEVKAMPTFLLM-REGAVVDKLV------G----ANPEEIRKRIDSFVQSIRVY 128 (130)
Q Consensus 82 ~~~~~~v~~~P~~~~~-~~g~~~~~~~------g----~~~~~l~~~i~~~~~~~~~~ 128 (130)
+.+.|++..+|+++++ ++|+.+.... + .+.+++.+.|+.++...+.+
T Consensus 101 ~~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 158 (171)
T cd02969 101 VAKAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVP 158 (171)
T ss_pred HHHHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCC
Confidence 6778999999988888 6888775421 1 25688999999998776543
No 108
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.30 E-value=1.2e-11 Score=72.61 Aligned_cols=73 Identities=30% Similarity=0.603 Sum_probs=55.6
Q ss_pred hHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHH---HHHHHhC-CCeEEEEEeccCcHhHHHhcCCCCCCEEEEe
Q 032978 22 SWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLF---EELASAY-PDVLFLSVDVDDVKDVASKLEVKAMPTFLLM 97 (130)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l---~~l~~~~-~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~ 97 (130)
.+++.+..+..+++++ +|+|+++||+.|+.+...+ .++.+.+ .++.++.+|.+....... +...++|+++++
T Consensus 5 d~~~al~~A~~~~kpv---lv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~-~~~~~~P~~~~l 80 (82)
T PF13899_consen 5 DYEEALAEAKKEGKPV---LVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQ-FDRQGYPTFFFL 80 (82)
T ss_dssp SHHHHHHHHHHHTSEE---EEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHH-HHHCSSSEEEEE
T ss_pred hHHHHHHHHHHcCCCE---EEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHH-hCCccCCEEEEe
Confidence 4677777777789999 9999999999999998876 3444322 579999999987665332 222679999987
Q ss_pred e
Q 032978 98 R 98 (130)
Q Consensus 98 ~ 98 (130)
.
T Consensus 81 d 81 (82)
T PF13899_consen 81 D 81 (82)
T ss_dssp E
T ss_pred C
Confidence 4
No 109
>smart00594 UAS UAS domain.
Probab=99.29 E-value=1.1e-10 Score=73.48 Aligned_cols=96 Identities=21% Similarity=0.229 Sum_probs=72.8
Q ss_pred hhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHH---HHHHHhC-CCeEEEEEecc--CcHhHHHhcCCCCCCE
Q 032978 20 VESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLF---EELASAY-PDVLFLSVDVD--DVKDVASKLEVKAMPT 93 (130)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l---~~l~~~~-~~v~~~~vd~~--~~~~~~~~~~v~~~P~ 93 (130)
..+|++++..+..++|.+ +|+|+++||+.|+.+...+ .++.+.. .++.+..+|.+ +...++..|++.++|+
T Consensus 13 ~gs~~~a~~~Ak~~~K~~---lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~ 89 (122)
T smart00594 13 QGSLEAAKQEASRQRRLL---WLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPY 89 (122)
T ss_pred eCCHHHHHHHHHhhcCCE---EEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCE
Confidence 457888888887788999 9999999999999987743 2233323 36788778865 4557889999999999
Q ss_pred EEEe-eCC-----eEEeeEecC-CHHHHHHHH
Q 032978 94 FLLM-REG-----AVVDKLVGA-NPEEIRKRI 118 (130)
Q Consensus 94 ~~~~-~~g-----~~~~~~~g~-~~~~l~~~i 118 (130)
++++ .+| ..+.+..|. ++++|...+
T Consensus 90 ~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 90 VAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 9998 454 356777788 788887765
No 110
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.27 E-value=9.9e-11 Score=76.36 Aligned_cols=88 Identities=25% Similarity=0.274 Sum_probs=66.9
Q ss_pred cCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC--CCeEEEEEecc--------C---cHhHHHh-cC----------
Q 032978 32 NQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVD--------D---VKDVASK-LE---------- 87 (130)
Q Consensus 32 ~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~--------~---~~~~~~~-~~---------- 87 (130)
.+|+++ +|.||++||++|+...|.+.++.++| .++.++.|++. . ...++++ ++
T Consensus 20 ~~Gk~v---vv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~ 96 (153)
T TIGR02540 20 YRGKVS---LVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIK 96 (153)
T ss_pred hCCCEE---EEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEe
Confidence 378999 99999999999999999999999998 36999988841 1 1122221 11
Q ss_pred -------------C---CCCC-----EEEEeeCCeEEeeEecC-CHHHHHHHHHHHh
Q 032978 88 -------------V---KAMP-----TFLLMREGAVVDKLVGA-NPEEIRKRIDSFV 122 (130)
Q Consensus 88 -------------v---~~~P-----~~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 122 (130)
+ ..+| ++++-++|+.+..+.|. +.++|...|++++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~ 153 (153)
T TIGR02540 97 ILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV 153 (153)
T ss_pred cCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence 1 1367 56666999999999998 8888988887753
No 111
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.26 E-value=3.8e-11 Score=79.70 Aligned_cols=93 Identities=26% Similarity=0.339 Sum_probs=84.5
Q ss_pred cCCCeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCCC
Q 032978 10 NKSRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVK 89 (130)
Q Consensus 10 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~ 89 (130)
..+.+.+|.+..+|-..+.. ..-| |+.||-+....|+-+...|+.|++.+.+..|+.||+...|.++.+++|+
T Consensus 64 GhG~y~ev~~Ekdf~~~~~k----S~kV---VcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~Ik 136 (211)
T KOG1672|consen 64 GHGEYEEVASEKDFFEEVKK----SEKV---VCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNIK 136 (211)
T ss_pred CCceEEEeccHHHHHHHhhc----CceE---EEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeeeee
Confidence 45678899888888777763 4667 8999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeeCCeEEeeEecC
Q 032978 90 AMPTFLLMREGAVVDKLVGA 109 (130)
Q Consensus 90 ~~P~~~~~~~g~~~~~~~g~ 109 (130)
.+|++++|++|+...++.|.
T Consensus 137 VLP~v~l~k~g~~~D~iVGF 156 (211)
T KOG1672|consen 137 VLPTVALFKNGKTVDYVVGF 156 (211)
T ss_pred EeeeEEEEEcCEEEEEEeeH
Confidence 99999999999999988876
No 112
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.26 E-value=7.6e-11 Score=67.10 Aligned_cols=69 Identities=22% Similarity=0.501 Sum_probs=54.6
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHh----HHHhcCCCCCCEEEEeeCCeEEeeEecCCHHHHHH
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKD----VASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRK 116 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~----~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~ 116 (130)
+..|+++||++|+.+.+.|++ .++.+..+|++.++. +.+.+++.++|++++. |+. ..|.+++.|.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~~~~~i~~ 71 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGFDPEKLDQ 71 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeCCHHHHHH
Confidence 567999999999999888765 268888899987654 4566899999998874 554 55778888888
Q ss_pred HHH
Q 032978 117 RID 119 (130)
Q Consensus 117 ~i~ 119 (130)
+|+
T Consensus 72 ~i~ 74 (74)
T TIGR02196 72 LLE 74 (74)
T ss_pred HhC
Confidence 763
No 113
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=99.23 E-value=1.2e-10 Score=73.99 Aligned_cols=84 Identities=21% Similarity=0.491 Sum_probs=55.7
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhc---CCCCCCEEEEe-eCCeEEeeEec
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKL---EVKAMPTFLLM-REGAVVDKLVG 108 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~---~v~~~P~~~~~-~~g~~~~~~~g 108 (130)
..... ++.|..+||+.|+...|.+.++++..|++.+-.+..++++++..+| +..++|+++++ ++|+++.++ |
T Consensus 40 ~~~~~---ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~w-g 115 (129)
T PF14595_consen 40 QKPYN---ILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRW-G 115 (129)
T ss_dssp -S-EE---EEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEE-E
T ss_pred CCCcE---EEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEE-c
Confidence 44556 8889999999999999999999999888888889899888887765 67899999999 557888766 5
Q ss_pred CCHHHHHHHHHH
Q 032978 109 ANPEEIRKRIDS 120 (130)
Q Consensus 109 ~~~~~l~~~i~~ 120 (130)
.-++.+.+++.+
T Consensus 116 erP~~~~~~~~~ 127 (129)
T PF14595_consen 116 ERPKEVQELVDE 127 (129)
T ss_dssp SS-HHHH-----
T ss_pred CCCHHHhhcccc
Confidence 555555555543
No 114
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.23 E-value=8.3e-11 Score=76.67 Aligned_cols=81 Identities=25% Similarity=0.418 Sum_probs=59.8
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC--CCeEEEEEeccC-----------cHhHHHh-cC-----------
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDD-----------VKDVASK-LE----------- 87 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~-----------~~~~~~~-~~----------- 87 (130)
+++++ +|+||++||+ |+...|.|+++.++| .++.++.|+.+. ...++++ ++
T Consensus 21 ~Gk~v---vl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~ 96 (152)
T cd00340 21 KGKVL---LIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDV 96 (152)
T ss_pred CCCEE---EEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEec
Confidence 78999 9999999999 999999999999998 368898886531 1122222 22
Q ss_pred ------------CCCCC-----------E-EEEeeCCeEEeeEecC-CHHHHHHH
Q 032978 88 ------------VKAMP-----------T-FLLMREGAVVDKLVGA-NPEEIRKR 117 (130)
Q Consensus 88 ------------v~~~P-----------~-~~~~~~g~~~~~~~g~-~~~~l~~~ 117 (130)
+.++| + +++-++|+.+.++.|. +.++|++.
T Consensus 97 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 97 NGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred cCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 23456 3 4444899999999998 77777654
No 115
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=99.21 E-value=2.2e-10 Score=71.55 Aligned_cols=100 Identities=24% Similarity=0.442 Sum_probs=64.1
Q ss_pred ecChhhHHHHHHHhhcCCCceEeEEeEEEc-------CCChhhhhhhHHHHHHHHhCC-CeEEEEEeccCc-------Hh
Q 032978 17 VDSVESWETFVSQANNQGCPVRNVVVHFTA-------IWCMPSVAMNPLFEELASAYP-DVLFLSVDVDDV-------KD 81 (130)
Q Consensus 17 i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~-------~~C~~C~~~~~~l~~l~~~~~-~v~~~~vd~~~~-------~~ 81 (130)
+.+-+++.+.+.....+++++ +|+|++ +|||.|....|.+++.....+ +..++.+.+... ..
T Consensus 2 v~gy~~~~~~~~~~~~~~~~~---fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~ 78 (119)
T PF06110_consen 2 VRGYDEFEKLVEEYENSGKPL---FLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNP 78 (119)
T ss_dssp EECHHHHHHHHHC--TTTSEE---EEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSH
T ss_pred ccCHHHHHHHHHHhhcCCCeE---EEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCC
Confidence 345678888888754577889 999995 599999999999999887764 688888876432 23
Q ss_pred HHH--hcCCCCCCEEEEeeCCeEEeeEecCCHHHHHHHHH
Q 032978 82 VAS--KLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRID 119 (130)
Q Consensus 82 ~~~--~~~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~~i~ 119 (130)
+.. +++++++||++-+..++.+....-.+.+.+..+++
T Consensus 79 fR~~p~~~l~~IPTLi~~~~~~rL~e~e~~~~~lv~~~~e 118 (119)
T PF06110_consen 79 FRTDPDLKLKGIPTLIRWETGERLVEEECLNEDLVEMFFE 118 (119)
T ss_dssp HHH--CC---SSSEEEECTSS-EEEHHHHH-HHHHHHHHH
T ss_pred ceEcceeeeeecceEEEECCCCccchhhhccHHHHHHHhc
Confidence 444 59999999999997774433211115555555554
No 116
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=99.20 E-value=6.7e-10 Score=67.66 Aligned_cols=95 Identities=22% Similarity=0.324 Sum_probs=70.0
Q ss_pred EEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCC-eEEEEEeccCcH----hHHHhcCCC
Q 032978 15 VKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPD-VLFLSVDVDDVK----DVASKLEVK 89 (130)
Q Consensus 15 ~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~-v~~~~vd~~~~~----~~~~~~~v~ 89 (130)
..|++.++|++++..+ .++++ +|+-+++.|+.+......+++.....++ +.++.+|+-+++ .++.+|||.
T Consensus 2 ~~L~t~eql~~i~~~S--~~~~~---~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~ 76 (105)
T PF11009_consen 2 KPLTTEEQLEEILEES--KEKPV---LIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVK 76 (105)
T ss_dssp -E--SHHHHHHHHHH-----SEE---EEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT--
T ss_pred CccCCHHHHHHHHHhc--ccCcE---EEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCC
Confidence 4678899999999987 78999 9999999999999999999999988765 999999998766 568899998
Q ss_pred C-CCEEEEeeCCeEEeeEecC--CHHHH
Q 032978 90 A-MPTFLLMREGAVVDKLVGA--NPEEI 114 (130)
Q Consensus 90 ~-~P~~~~~~~g~~~~~~~g~--~~~~l 114 (130)
+ -|.++++++|+.+...... +.+.|
T Consensus 77 HeSPQ~ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 77 HESPQVILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp --SSEEEEEETTEEEEEEEGGG-SHHHH
T ss_pred cCCCcEEEEECCEEEEECccccCCHHhc
Confidence 5 7999999999998654433 55554
No 117
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=2.4e-11 Score=82.09 Aligned_cols=94 Identities=22% Similarity=0.420 Sum_probs=77.7
Q ss_pred CCCeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC--CCeEEEEEeccCcHhHHHhcCC
Q 032978 11 KSRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDDVKDVASKLEV 88 (130)
Q Consensus 11 ~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~~~~~~~~~~v 88 (130)
+..+.-+++.+.++..++.. +.+ -|+|.|++.|.+.|+.+.|.+.+|+.+| ++++|..+|+...++.+.+|+|
T Consensus 123 pe~ikyf~~~q~~deel~rn--k~t---~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfri 197 (265)
T KOG0914|consen 123 PETIKYFTNMQLEDEELDRN--KRT---YWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRI 197 (265)
T ss_pred chheeeecchhhHHHHhccC--Cce---EEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheee
Confidence 44566776677777777642 333 4599999999999999999999999999 5799999999999999999987
Q ss_pred C------CCCEEEEeeCCeEEeeEecC
Q 032978 89 K------AMPTFLLMREGAVVDKLVGA 109 (130)
Q Consensus 89 ~------~~P~~~~~~~g~~~~~~~g~ 109 (130)
. .+||+++|++|+++.+....
T Consensus 198 s~s~~srQLPT~ilFq~gkE~~RrP~v 224 (265)
T KOG0914|consen 198 SLSPGSRQLPTYILFQKGKEVSRRPDV 224 (265)
T ss_pred ccCcccccCCeEEEEccchhhhcCccc
Confidence 4 58999999999998765443
No 118
>PF13728 TraF: F plasmid transfer operon protein
Probab=99.16 E-value=1e-09 Score=75.38 Aligned_cols=88 Identities=20% Similarity=0.268 Sum_probs=68.6
Q ss_pred HHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEecc-----------CcHhHHHhcCCCCCCE
Q 032978 25 TFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVD-----------DVKDVASKLEVKAMPT 93 (130)
Q Consensus 25 ~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~-----------~~~~~~~~~~v~~~P~ 93 (130)
+.+... .++.- +++||.+.|+.|+.+.|.++.++++| ++.++.|++| .+..++++++|..+|+
T Consensus 113 ~~l~~l--a~~~g---L~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pa 186 (215)
T PF13728_consen 113 KALKQL--AQKYG---LFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPA 186 (215)
T ss_pred HHHHHH--hhCeE---EEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCE
Confidence 344444 56666 99999999999999999999999999 6777777776 3467899999999999
Q ss_pred EEEe-eCC-eEEeeEecC-CHHHHHHHH
Q 032978 94 FLLM-REG-AVVDKLVGA-NPEEIRKRI 118 (130)
Q Consensus 94 ~~~~-~~g-~~~~~~~g~-~~~~l~~~i 118 (130)
++++ .++ +...-..|. +.++|.+.|
T Consensus 187 l~Lv~~~~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 187 LFLVNPNTKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred EEEEECCCCeEEEEeeecCCHHHHHHhh
Confidence 8888 334 555555577 888877654
No 119
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.16 E-value=1.1e-09 Score=67.97 Aligned_cols=103 Identities=19% Similarity=0.298 Sum_probs=84.9
Q ss_pred eEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCC-eEEEEEeccCcHhHHHhcCCCCCC
Q 032978 14 VVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPD-VLFLSVDVDDVKDVASKLEVKAMP 92 (130)
Q Consensus 14 v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~P 92 (130)
+..+++.++.++++..+ ..+.+ ||.|...|.|.|.++...|.++++...+ ..++.+|+++-+++.+.|++...|
T Consensus 5 Lp~L~s~~~VdqaI~~t--~~rlv---ViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~ 79 (142)
T KOG3414|consen 5 LPTLHSGWEVDQAILST--EERLV---VIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPP 79 (142)
T ss_pred ccccccHHHHHHHHhcc--cceEE---EEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCc
Confidence 45678889999999887 88999 9999999999999999999999998866 899999999999999999999999
Q ss_pred EEEEeeCCeEE--eeEecC---------CHHHHHHHHHHH
Q 032978 93 TFLLMREGAVV--DKLVGA---------NPEEIRKRIDSF 121 (130)
Q Consensus 93 ~~~~~~~g~~~--~~~~g~---------~~~~l~~~i~~~ 121 (130)
++++|-+++-+ +...|. +.+++.+.++..
T Consensus 80 tvmfFfn~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~i 119 (142)
T KOG3414|consen 80 TVMFFFNNKHMKIDLGTGDNNKINFAFEDKQEFIDIIETI 119 (142)
T ss_pred eEEEEEcCceEEEeeCCCCCceEEEEeccHHHHHHHHHHH
Confidence 98888555543 322222 466777666654
No 120
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.14 E-value=8.1e-10 Score=70.64 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=65.4
Q ss_pred CCCceEeEEeEEE-cCCChhhhhhhHHHHHHHHhC--CCeEEEEEeccC---------------------cHhHHHhcCC
Q 032978 33 QGCPVRNVVVHFT-AIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDD---------------------VKDVASKLEV 88 (130)
Q Consensus 33 ~~~~~~~~vv~f~-~~~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~---------------------~~~~~~~~~v 88 (130)
.++++ +|.|| +.||+.|....+.+.++.+++ .++.++.|..+. ...+.+.|++
T Consensus 22 ~gk~~---ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 98 (140)
T cd03017 22 RGKPV---VLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGV 98 (140)
T ss_pred CCCcE---EEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCC
Confidence 67899 99999 689999999999999998887 468888887543 2367788998
Q ss_pred CCC---------CEEEEe-eCCeEEeeEecC-CHHHHHHH
Q 032978 89 KAM---------PTFLLM-REGAVVDKLVGA-NPEEIRKR 117 (130)
Q Consensus 89 ~~~---------P~~~~~-~~g~~~~~~~g~-~~~~l~~~ 117 (130)
... |+.+++ ++|+....+.|. ....+.+.
T Consensus 99 ~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~ 138 (140)
T cd03017 99 WGEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEV 138 (140)
T ss_pred ccccccccCCcceeEEEECCCCEEEEEEecCCccchHHHH
Confidence 887 887777 689999999888 44555543
No 121
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.13 E-value=4.4e-10 Score=75.46 Aligned_cols=90 Identities=22% Similarity=0.327 Sum_probs=65.9
Q ss_pred cCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC--CCeEEEEEeccC-------c-H---hH-HHh------------
Q 032978 32 NQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDD-------V-K---DV-ASK------------ 85 (130)
Q Consensus 32 ~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~-------~-~---~~-~~~------------ 85 (130)
++++++ +++.+|++||++|+...|.|.++.++| .++.++.|+++. . . .+ .++
T Consensus 38 ~~Gk~v--vlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d 115 (183)
T PTZ00256 38 FKGKKA--IIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIE 115 (183)
T ss_pred hCCCcE--EEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEe
Confidence 378765 045669999999999999999999998 368999887531 0 0 00 111
Q ss_pred ------------------------cCCCCCCE----EEEeeCCeEEeeEecC-CHHHHHHHHHHHhh
Q 032978 86 ------------------------LEVKAMPT----FLLMREGAVVDKLVGA-NPEEIRKRIDSFVQ 123 (130)
Q Consensus 86 ------------------------~~v~~~P~----~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~ 123 (130)
+++.++|+ +++-++|+.+.++.|. +.+.+.+.|.++++
T Consensus 116 ~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 116 VNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred cCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHhc
Confidence 13447794 6666999999999888 78889999988764
No 122
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.12 E-value=5.3e-10 Score=68.02 Aligned_cols=83 Identities=43% Similarity=0.771 Sum_probs=67.7
Q ss_pred CCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCC-CeEEEEEecc-CcHhHHHhcC--CCCCCEEEEeeCCeEEeeEec-
Q 032978 34 GCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYP-DVLFLSVDVD-DVKDVASKLE--VKAMPTFLLMREGAVVDKLVG- 108 (130)
Q Consensus 34 ~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~-~v~~~~vd~~-~~~~~~~~~~--v~~~P~~~~~~~g~~~~~~~g- 108 (130)
++++ ++.||++||++|+...|.+.+++++++ .+.++.+|.. ....+...|+ +..+|+++++.+|.......+
T Consensus 32 ~~~~---~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 108 (127)
T COG0526 32 GKPV---LVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGG 108 (127)
T ss_pred CceE---EEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhc
Confidence 6788 999999999999999999999999996 5999999997 7888999999 999999998877776655554
Q ss_pred -C-CHHHHHHHHH
Q 032978 109 -A-NPEEIRKRID 119 (130)
Q Consensus 109 -~-~~~~l~~~i~ 119 (130)
. ....+.....
T Consensus 109 ~~~~~~~~~~~~~ 121 (127)
T COG0526 109 KVLPKEALIDALG 121 (127)
T ss_pred ccCCHHHHHHHhc
Confidence 2 3444444433
No 123
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=99.10 E-value=2.2e-09 Score=62.11 Aligned_cols=70 Identities=21% Similarity=0.404 Sum_probs=56.6
Q ss_pred EEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCCCCCCEEEEeeCCeEEeeEec-C-CHHHHHHHHH
Q 032978 44 FTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVG-A-NPEEIRKRID 119 (130)
Q Consensus 44 f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g-~-~~~~l~~~i~ 119 (130)
+++++|+.|..+...+++++..+ ++.+-.+|....+++ .+|++.++|++++ ||+.... | . +.++|.++|+
T Consensus 5 v~~~~C~~C~~~~~~~~~~~~~~-~i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~~~~~--G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 5 VFSPGCPYCPELVQLLKEAAEEL-GIEVEIIDIEDFEEI-EKYGVMSVPALVI--NGKVVFV--GRVPSKEELKELLE 76 (76)
T ss_dssp EECSSCTTHHHHHHHHHHHHHHT-TEEEEEEETTTHHHH-HHTT-SSSSEEEE--TTEEEEE--SS--HHHHHHHHHH
T ss_pred EeCCCCCCcHHHHHHHHHHHHhc-CCeEEEEEccCHHHH-HHcCCCCCCEEEE--CCEEEEE--ecCCCHHHHHHHhC
Confidence 36888999999999999999998 588877888777777 9999999999866 7876544 5 3 7889988875
No 124
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.10 E-value=9.1e-10 Score=63.37 Aligned_cols=70 Identities=13% Similarity=0.395 Sum_probs=50.6
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHh-----cCCCCCCEEEEeeCCeEEeeEecCCHHHHH
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASK-----LEVKAMPTFLLMREGAVVDKLVGANPEEIR 115 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~-----~~v~~~P~~~~~~~g~~~~~~~g~~~~~l~ 115 (130)
++.||++||++|+++.+.|.++ ++.+-.+|+++.+..... +++.++|++ ++.+|+.+. ..+..++.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-----~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~---~~~~~~~~ 72 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-----GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT---NPSAAQVK 72 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec---CCCHHHHH
Confidence 6789999999999999988766 355566888877655544 388999996 466775543 45656666
Q ss_pred HHHH
Q 032978 116 KRID 119 (130)
Q Consensus 116 ~~i~ 119 (130)
+.++
T Consensus 73 ~~l~ 76 (77)
T TIGR02200 73 AKLQ 76 (77)
T ss_pred HHhh
Confidence 5553
No 125
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.09 E-value=1.4e-09 Score=70.01 Aligned_cols=83 Identities=11% Similarity=0.131 Sum_probs=64.4
Q ss_pred CCCceEeEEeEEEcCC-ChhhhhhhHHHHHHHHhCCCeEEEEEeccCc-----------------------HhHHHhcCC
Q 032978 33 QGCPVRNVVVHFTAIW-CMPSVAMNPLFEELASAYPDVLFLSVDVDDV-----------------------KDVASKLEV 88 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~-C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~-----------------------~~~~~~~~v 88 (130)
.++++ ||+||+.| |++|+...+.|.++.++++++.|+.|+.+.. ..+.+.|++
T Consensus 25 ~gk~v---vl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv 101 (143)
T cd03014 25 AGKVK---VISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGV 101 (143)
T ss_pred CCCeE---EEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCC
Confidence 68899 99999998 6999999999999999998899999887521 345677777
Q ss_pred CC------CCEEEEe-eCCeEEeeEecC---CHHHHHHHH
Q 032978 89 KA------MPTFLLM-REGAVVDKLVGA---NPEEIRKRI 118 (130)
Q Consensus 89 ~~------~P~~~~~-~~g~~~~~~~g~---~~~~l~~~i 118 (130)
.. .|+.+++ ++|+.+..+.|. ....+++.+
T Consensus 102 ~~~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 102 LIKDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAAL 141 (143)
T ss_pred eeccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence 53 5776666 789999888765 334555444
No 126
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=4.2e-09 Score=67.93 Aligned_cols=84 Identities=17% Similarity=0.303 Sum_probs=68.0
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHH---HHHHHhC-CCeEEEEEeccC----------------cHhHHHhcCCCCCC
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLF---EELASAY-PDVLFLSVDVDD----------------VKDVASKLEVKAMP 92 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l---~~l~~~~-~~v~~~~vd~~~----------------~~~~~~~~~v~~~P 92 (130)
.++.. +++|-++.|+.|.++...+ +++.+-+ +++.++.++++. ..++++.|+++++|
T Consensus 41 ~~Kyl---llmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstP 117 (182)
T COG2143 41 NDKYL---LLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTP 117 (182)
T ss_pred cCcEE---EEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCc
Confidence 78999 9999999999999988866 3454444 568888888653 34899999999999
Q ss_pred EEEEe-eCCeEEeeEecC-CHHHHHHHHH
Q 032978 93 TFLLM-REGAVVDKLVGA-NPEEIRKRID 119 (130)
Q Consensus 93 ~~~~~-~~g~~~~~~~g~-~~~~l~~~i~ 119 (130)
+++++ ++|+.+....|. .++++...++
T Consensus 118 tfvFfdk~Gk~Il~lPGY~ppe~Fl~vlk 146 (182)
T COG2143 118 TFVFFDKTGKTILELPGYMPPEQFLAVLK 146 (182)
T ss_pred eEEEEcCCCCEEEecCCCCCHHHHHHHHH
Confidence 99999 778999999999 7776665443
No 127
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.06 E-value=5.5e-09 Score=69.46 Aligned_cols=87 Identities=18% Similarity=0.236 Sum_probs=66.5
Q ss_pred CCCceEeEEeEEE-cCCChhhhhhhHHHHHHHHhC--CCeEEEEEeccCc----------------------------Hh
Q 032978 33 QGCPVRNVVVHFT-AIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDDV----------------------------KD 81 (130)
Q Consensus 33 ~~~~~~~~vv~f~-~~~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~~----------------------------~~ 81 (130)
.++++ ||+|| +.||+.|....+.|.++.+++ .++.++.|+.+.. ..
T Consensus 28 ~Gk~v---vl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~ 104 (173)
T cd03015 28 KGKWV---VLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKK 104 (173)
T ss_pred CCCEE---EEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchh
Confidence 67899 99999 899999999999999999988 4688888875431 24
Q ss_pred HHHhcCCC------CCCEEEEe-eCCeEEeeEecC-----CHHHHHHHHHHHh
Q 032978 82 VASKLEVK------AMPTFLLM-REGAVVDKLVGA-----NPEEIRKRIDSFV 122 (130)
Q Consensus 82 ~~~~~~v~------~~P~~~~~-~~g~~~~~~~g~-----~~~~l~~~i~~~~ 122 (130)
+.+.|++. .+|+.+++ ++|+....+.+. +.+++.+.|+.+.
T Consensus 105 ~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~~ 157 (173)
T cd03015 105 ISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDALQ 157 (173)
T ss_pred HHHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 56677776 46776666 789888877544 4567777777663
No 128
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.05 E-value=7.7e-10 Score=71.67 Aligned_cols=70 Identities=27% Similarity=0.556 Sum_probs=55.9
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC----CCeEEEEEeccCc-------------------------HhHH
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY----PDVLFLSVDVDDV-------------------------KDVA 83 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~----~~v~~~~vd~~~~-------------------------~~~~ 83 (130)
.|+.+ .++|.+.||++|+.+.|.|.++.++. ..+.++.|+.|.. .++.
T Consensus 32 ~gKvV---~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~ 108 (157)
T KOG2501|consen 32 QGKVV---GLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLS 108 (157)
T ss_pred CCcEE---EEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHH
Confidence 78999 99999999999999999999987765 2356666654432 2677
Q ss_pred HhcCCCCCCEEEEe-eCCeEEee
Q 032978 84 SKLEVKAMPTFLLM-REGAVVDK 105 (130)
Q Consensus 84 ~~~~v~~~P~~~~~-~~g~~~~~ 105 (130)
++|.|.++|++++. .+|..+..
T Consensus 109 ~ky~v~~iP~l~i~~~dG~~v~~ 131 (157)
T KOG2501|consen 109 EKYEVKGIPALVILKPDGTVVTE 131 (157)
T ss_pred HhcccCcCceeEEecCCCCEehH
Confidence 89999999998888 67877754
No 129
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.05 E-value=3.4e-09 Score=70.16 Aligned_cols=74 Identities=12% Similarity=0.096 Sum_probs=60.1
Q ss_pred CCCceEeEEeEEEcCC-ChhhhhhhHHHHHHHHhCCCeEEEEEeccC-----------------------cHhHHHhcCC
Q 032978 33 QGCPVRNVVVHFTAIW-CMPSVAMNPLFEELASAYPDVLFLSVDVDD-----------------------VKDVASKLEV 88 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~-C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~-----------------------~~~~~~~~~v 88 (130)
.++++ +|+||+.| |++|....+.|.++.+++.++.++.|+.+. ...+++.|++
T Consensus 43 ~Gk~v---vl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv 119 (167)
T PRK00522 43 AGKRK---VLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGV 119 (167)
T ss_pred CCCEE---EEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCC
Confidence 78899 99999999 999999999999999998778888887543 1267788898
Q ss_pred CCCC---------EEEEe-eCCeEEeeEecC
Q 032978 89 KAMP---------TFLLM-REGAVVDKLVGA 109 (130)
Q Consensus 89 ~~~P---------~~~~~-~~g~~~~~~~g~ 109 (130)
...| +.+++ ++|+....+.+.
T Consensus 120 ~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~ 150 (167)
T PRK00522 120 AIAEGPLKGLLARAVFVLDENNKVVYSELVP 150 (167)
T ss_pred eecccccCCceeeEEEEECCCCeEEEEEECC
Confidence 8776 65555 789988887543
No 130
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=99.04 E-value=2e-09 Score=58.54 Aligned_cols=60 Identities=33% Similarity=0.558 Sum_probs=51.1
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHH---hcCCCCCCEEEEeeCC
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVAS---KLEVKAMPTFLLMREG 100 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~---~~~v~~~P~~~~~~~g 100 (130)
++.||++||+.|+.+.+.+.++....+++.+..++++....... .+++..+|+++++..|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 46899999999999999999994333679999999998876654 7899999999999776
No 131
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=99.04 E-value=9.4e-09 Score=72.14 Aligned_cols=95 Identities=20% Similarity=0.289 Sum_probs=73.0
Q ss_pred HHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCc-----------HhHHHhcCCCCCCE
Q 032978 25 TFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDV-----------KDVASKLEVKAMPT 93 (130)
Q Consensus 25 ~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~-----------~~~~~~~~v~~~P~ 93 (130)
+.+... .++.- +++||...|+.|+++.|.++.++++| ++.++.|++|.. ...++++++..+|+
T Consensus 143 ~~i~~l--a~~~g---L~fFy~~~C~~C~~~apil~~fa~~y-gi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pa 216 (256)
T TIGR02739 143 KAIQQL--SQSYG---LFFFYRGKSPISQKMAPVIQAFAKEY-GISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPA 216 (256)
T ss_pred HHHHHH--Hhcee---EEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCce
Confidence 344443 45566 89999999999999999999999999 577777776643 45788999999999
Q ss_pred EEEe-eC-CeEEeeEecC-CHHHHHHHHHHHhhhh
Q 032978 94 FLLM-RE-GAVVDKLVGA-NPEEIRKRIDSFVQSI 125 (130)
Q Consensus 94 ~~~~-~~-g~~~~~~~g~-~~~~l~~~i~~~~~~~ 125 (130)
++++ .+ ++...-..|. +.++|.+.|...+..-
T Consensus 217 l~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~~~f 251 (256)
T TIGR02739 217 LYLVNPKSQKMSPLAYGFISQDELKERILNVLTQF 251 (256)
T ss_pred EEEEECCCCcEEEEeeccCCHHHHHHHHHHHHhcc
Confidence 8777 44 4555555577 8899988888776543
No 132
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.02 E-value=3e-09 Score=66.49 Aligned_cols=69 Identities=29% Similarity=0.560 Sum_probs=57.2
Q ss_pred CCCceEeEEeEEEcC-CChhhhhhhHHHHHHHHhC--CCeEEEEEeccCc---------------------HhHHHhcCC
Q 032978 33 QGCPVRNVVVHFTAI-WCMPSVAMNPLFEELASAY--PDVLFLSVDVDDV---------------------KDVASKLEV 88 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~-~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~~---------------------~~~~~~~~v 88 (130)
.++++ +|.||+. ||+.|+...+.|.++..++ .++.++.|+.+.. ..+.+.|++
T Consensus 24 ~gk~~---vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 100 (124)
T PF00578_consen 24 KGKPV---VLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGI 100 (124)
T ss_dssp TTSEE---EEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTC
T ss_pred CCCcE---EEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCC
Confidence 67999 9999999 9999999999999999888 3799999987542 367788888
Q ss_pred C------CCCEEEEe-eCCeEEe
Q 032978 89 K------AMPTFLLM-REGAVVD 104 (130)
Q Consensus 89 ~------~~P~~~~~-~~g~~~~ 104 (130)
. .+|+++++ ++|+.+.
T Consensus 101 ~~~~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 101 EDEKDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp EETTTSEESEEEEEEETTSBEEE
T ss_pred ccccCCceEeEEEEECCCCEEEe
Confidence 8 88987777 6666554
No 133
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.01 E-value=5.7e-09 Score=70.32 Aligned_cols=86 Identities=16% Similarity=0.142 Sum_probs=64.5
Q ss_pred CCCceEeEEeEEE-cCCChhhhhhhHHHHHHHHhC--CCeEEEEEeccC-------------------------cHhHHH
Q 032978 33 QGCPVRNVVVHFT-AIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDD-------------------------VKDVAS 84 (130)
Q Consensus 33 ~~~~~~~~vv~f~-~~~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~-------------------------~~~~~~ 84 (130)
.++++ ||+|| +.||+.|....+.|.++.+++ .++.++.|+.+. ...+++
T Consensus 30 ~Gk~v---vl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~ 106 (187)
T TIGR03137 30 KGKWS---VFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTR 106 (187)
T ss_pred CCCEE---EEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHH
Confidence 78899 99999 999999999999999988887 467777776543 225677
Q ss_pred hcCCC------CCCEEEEe-eCCeEEeeEecC-----CHHHHHHHHHHH
Q 032978 85 KLEVK------AMPTFLLM-REGAVVDKLVGA-----NPEEIRKRIDSF 121 (130)
Q Consensus 85 ~~~v~------~~P~~~~~-~~g~~~~~~~g~-----~~~~l~~~i~~~ 121 (130)
.|++. ..|+.+++ ++|+....+... +.+++.+.|+.+
T Consensus 107 ~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~ 155 (187)
T TIGR03137 107 NFGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKAA 155 (187)
T ss_pred HhCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 88886 35866666 789888776432 456676666543
No 134
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.97 E-value=3.1e-08 Score=62.26 Aligned_cols=103 Identities=17% Similarity=0.246 Sum_probs=79.4
Q ss_pred eEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCC-eEEEEEeccCcHhHHHhcCCCCCC
Q 032978 14 VVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPD-VLFLSVDVDDVKDVASKLEVKAMP 92 (130)
Q Consensus 14 v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~P 92 (130)
+..+++..+.++++... .++.+ +|.|...|-+.|.++...|.+++++.++ ..++.+|.++-+++.+.|.+. .|
T Consensus 2 L~~L~s~~~VDqAI~~e--~drvv---ViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP 75 (133)
T PF02966_consen 2 LPHLHSGWHVDQAILSE--EDRVV---VIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DP 75 (133)
T ss_dssp SEEE-SHHHHHHHHHH---SSSEE---EEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SS
T ss_pred CcccCccchHHHHHhcc--CceEE---EEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CC
Confidence 35678899999998887 89999 9999999999999999999999998865 999999999999999999998 88
Q ss_pred E-EEEeeCCeEEeeEecC-----------CHHHHHHHHHHHh
Q 032978 93 T-FLLMREGAVVDKLVGA-----------NPEEIRKRIDSFV 122 (130)
Q Consensus 93 ~-~~~~~~g~~~~~~~g~-----------~~~~l~~~i~~~~ 122 (130)
. ++||-+++-+....|. +.+++.+.++..-
T Consensus 76 ~tvmFF~rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie~iy 117 (133)
T PF02966_consen 76 CTVMFFFRNKHMMVDFGTGNNNKINWAFEDKQEFIDIIETIY 117 (133)
T ss_dssp EEEEEEETTEEEEEESSSSSSSSBCS--SCHHHHHHHHHHHH
T ss_pred eEEEEEecCeEEEEEecCCCccEEEEEcCcHHHHHHHHHHHH
Confidence 5 5555456655332222 3677777776553
No 135
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=6e-09 Score=64.24 Aligned_cols=78 Identities=28% Similarity=0.488 Sum_probs=62.0
Q ss_pred cChhhHHHHHHHhhcCCCceEeEEeEEEc--------CCChhhhhhhHHHHHHHHhCC-CeEEEEEeccC-------cHh
Q 032978 18 DSVESWETFVSQANNQGCPVRNVVVHFTA--------IWCMPSVAMNPLFEELASAYP-DVLFLSVDVDD-------VKD 81 (130)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~vv~f~~--------~~C~~C~~~~~~l~~l~~~~~-~v~~~~vd~~~-------~~~ 81 (130)
...++|++.+++.. +++.+ +|+|++ +|||.|.++.|.+.+..+..+ +++|+.+++-+ +..
T Consensus 10 ~g~e~~~~~~~~~~-n~~~i---fvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~ 85 (128)
T KOG3425|consen 10 PGYESFEETLKNVE-NGKTI---FVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANP 85 (128)
T ss_pred chHHHHHHHHHHHh-CCceE---EEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCc
Confidence 34578888888764 45558 999996 699999999999999888664 69999999754 335
Q ss_pred HHHhcCC-CCCCEEEEeeC
Q 032978 82 VASKLEV-KAMPTFLLMRE 99 (130)
Q Consensus 82 ~~~~~~v-~~~P~~~~~~~ 99 (130)
+....++ .++||++-|.+
T Consensus 86 FR~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 86 FRKDPGILTAVPTLLRWKR 104 (128)
T ss_pred cccCCCceeecceeeEEcC
Confidence 6667777 89999999974
No 136
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.94 E-value=1.1e-08 Score=60.29 Aligned_cols=75 Identities=19% Similarity=0.278 Sum_probs=57.0
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcH----hHHHhcC--CCCCCEEEEeeCCeEEeeEecCCHHHH
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVK----DVASKLE--VKAMPTFLLMREGAVVDKLVGANPEEI 114 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~----~~~~~~~--v~~~P~~~~~~~g~~~~~~~g~~~~~l 114 (130)
|+.|+.+||+.|+++...|+++..++.++.+..+|++..+ ++...++ +..+|++++ +|+.+. ..++|
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~ig-----g~~~~ 75 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHIG-----GCTDF 75 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEEc-----CHHHH
Confidence 6789999999999999999999987778899999988653 4544444 478999764 676553 23667
Q ss_pred HHHHHHHh
Q 032978 115 RKRIDSFV 122 (130)
Q Consensus 115 ~~~i~~~~ 122 (130)
.+++++.+
T Consensus 76 ~~~~~~~~ 83 (85)
T PRK11200 76 EAYVKENL 83 (85)
T ss_pred HHHHHHhc
Confidence 77776654
No 137
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.94 E-value=3.9e-08 Score=68.74 Aligned_cols=89 Identities=18% Similarity=0.250 Sum_probs=68.0
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccC-----------cHhHHHhcCCCCCCEEEEe-e-C
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD-----------VKDVASKLEVKAMPTFLLM-R-E 99 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~-----------~~~~~~~~~v~~~P~~~~~-~-~ 99 (130)
.+..- +++||.+.|++|+++.|.++.++++| ++.++.|++|. +...+.++++..+|+++++ . .
T Consensus 142 a~~~G---L~fFy~s~Cp~C~~~aPil~~fa~~y-g~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t 217 (248)
T PRK13703 142 AEHYG---LMFFYRGQDPIDGQLAQVINDFRDTY-GLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKS 217 (248)
T ss_pred Hhcce---EEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCC
Confidence 44566 89999999999999999999999998 45555555543 2235678999999998888 3 3
Q ss_pred CeEEeeEecC-CHHHHHHHHHHHhhhh
Q 032978 100 GAVVDKLVGA-NPEEIRKRIDSFVQSI 125 (130)
Q Consensus 100 g~~~~~~~g~-~~~~l~~~i~~~~~~~ 125 (130)
++...-..|. +.++|.+.|...+..-
T Consensus 218 ~~~~pv~~G~iS~deL~~Ri~~v~t~~ 244 (248)
T PRK13703 218 GSVRPLSYGFITQDDLAKRFLNVSTDF 244 (248)
T ss_pred CcEEEEeeccCCHHHHHHHHHHHHhcc
Confidence 4565656677 8899998888775543
No 138
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.94 E-value=9.6e-09 Score=71.43 Aligned_cols=80 Identities=19% Similarity=0.341 Sum_probs=61.4
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEec------------------------------------
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDV------------------------------------ 76 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~------------------------------------ 76 (130)
+++.+ ++.|+.+.||+|+++++.++++.+. ++.+..+..
T Consensus 106 ~~k~~---I~vFtDp~CpyCkkl~~~l~~~~~~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~ 180 (232)
T PRK10877 106 QEKHV---ITVFTDITCGYCHKLHEQMKDYNAL--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVS 180 (232)
T ss_pred CCCEE---EEEEECCCChHHHHHHHHHHHHhcC--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCC
Confidence 45677 8999999999999999999887542 455554431
Q ss_pred --------cCcHhHHHhcCCCCCCEEEEeeCCeEEeeEecC-CHHHHHHHHHHH
Q 032978 77 --------DDVKDVASKLEVKAMPTFLLMREGAVVDKLVGA-NPEEIRKRIDSF 121 (130)
Q Consensus 77 --------~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~i~~~ 121 (130)
.++.++++++||+++|+++ +.+|+.+ .|. .++.|.++|++.
T Consensus 181 ~~~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 181 PASCDVDIADHYALGVQFGVQGTPAIV-LSNGTLV---PGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccccchHHHhHHHHHHcCCccccEEE-EcCCeEe---eCCCCHHHHHHHHHHc
Confidence 1123778899999999988 6788766 477 789999998864
No 139
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.94 E-value=2.9e-08 Score=64.62 Aligned_cols=81 Identities=16% Similarity=0.144 Sum_probs=61.1
Q ss_pred CCCceEeEEeEEEcC-CChhhhhhhHHHHHHHHhC--CCeEEEEEeccC---------------------cHhHHHhcCC
Q 032978 33 QGCPVRNVVVHFTAI-WCMPSVAMNPLFEELASAY--PDVLFLSVDVDD---------------------VKDVASKLEV 88 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~-~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~---------------------~~~~~~~~~v 88 (130)
+++++ +|.||+. ||+.|....+.+.++.+++ .++.++.|+.+. ...+.+.|++
T Consensus 29 ~gk~~---ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 105 (154)
T PRK09437 29 QGQRV---LVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGV 105 (154)
T ss_pred CCCCE---EEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCC
Confidence 78899 9999975 7889999999999988887 468888887643 2356778887
Q ss_pred CCC------------CEEEEe-eCCeEEeeEecCC-HHHHHH
Q 032978 89 KAM------------PTFLLM-REGAVVDKLVGAN-PEEIRK 116 (130)
Q Consensus 89 ~~~------------P~~~~~-~~g~~~~~~~g~~-~~~l~~ 116 (130)
... |+.+++ ++|+.+..+.|.. .+.+.+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~ 147 (154)
T PRK09437 106 WGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDV 147 (154)
T ss_pred CcccccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHH
Confidence 654 554455 7999999998873 344333
No 140
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.4e-09 Score=73.91 Aligned_cols=103 Identities=27% Similarity=0.556 Sum_probs=88.0
Q ss_pred CeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCCCCCC
Q 032978 13 RVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMP 92 (130)
Q Consensus 13 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P 92 (130)
.+..+....+| +.. +++.+ ++.||++||..|..+...+..+++..+++.+++++.+..++++..+.+...|
T Consensus 2 ~v~~i~~~~~f---~~~---~~~~~---~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v~~vp 72 (227)
T KOG0911|consen 2 TVQFIVFQEQF---LDQ---KGKLL---VLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAVEAVP 72 (227)
T ss_pred CceeehhHHHH---HHh---ccchh---hhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHHhcCc
Confidence 34556566666 332 67888 9999999999999999999999998888999999999999999999999999
Q ss_pred EEEEeeCCeEEeeEecCCHHHHHHHHHHHhhh
Q 032978 93 TFLLMREGAVVDKLVGANPEEIRKRIDSFVQS 124 (130)
Q Consensus 93 ~~~~~~~g~~~~~~~g~~~~~l~~~i~~~~~~ 124 (130)
.++++..|+.+.+..+.++..+...++.+...
T Consensus 73 ~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~ 104 (227)
T KOG0911|consen 73 YFVFFFLGEKVDRLSGADPPFLVSKVEKLAES 104 (227)
T ss_pred eeeeeecchhhhhhhccCcHHHHHHHHHhhhh
Confidence 99999999999999898777777776666444
No 141
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.90 E-value=4e-08 Score=63.40 Aligned_cols=75 Identities=19% Similarity=0.270 Sum_probs=57.4
Q ss_pred CC-CceEeEEeEEE-cCCChhhhhhhHHHHHHHHhC--CCeEEEEEeccC---------------------c--HhHHHh
Q 032978 33 QG-CPVRNVVVHFT-AIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDD---------------------V--KDVASK 85 (130)
Q Consensus 33 ~~-~~~~~~vv~f~-~~~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~---------------------~--~~~~~~ 85 (130)
.+ +++ +|.|| ++||+.|....+.+.++.+++ .++.++.|+.+. . ..+.+.
T Consensus 26 ~g~k~~---vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 102 (149)
T cd03018 26 RGRKPV---VLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKA 102 (149)
T ss_pred cCCCeE---EEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHH
Confidence 55 788 88888 899999999999999999888 368888886432 2 456778
Q ss_pred cCCCC----CC--EEEEe-eCCeEEeeEecCC
Q 032978 86 LEVKA----MP--TFLLM-REGAVVDKLVGAN 110 (130)
Q Consensus 86 ~~v~~----~P--~~~~~-~~g~~~~~~~g~~ 110 (130)
|++.. +| +.+++ ++|+....+.|.+
T Consensus 103 ~g~~~~~~~~~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 103 YGVFDEDLGVAERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred hCCccccCCCccceEEEECCCCEEEEEEecCC
Confidence 88873 33 55555 7899998888763
No 142
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.88 E-value=7.9e-08 Score=60.04 Aligned_cols=97 Identities=15% Similarity=0.216 Sum_probs=75.2
Q ss_pred hHHHHHHHhhcCCCceEeEEeEEEcC----CChhhhhhhH--HHHHHHHhCCCeEEEEEeccC--cHhHHHhcCCCCCCE
Q 032978 22 SWETFVSQANNQGCPVRNVVVHFTAI----WCMPSVAMNP--LFEELASAYPDVLFLSVDVDD--VKDVASKLEVKAMPT 93 (130)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~vv~f~~~----~C~~C~~~~~--~l~~l~~~~~~v~~~~vd~~~--~~~~~~~~~v~~~P~ 93 (130)
+|.+++..+..+.|.+ +|++|++ ||..|+.... .+.++-+ .+..+...|++. ..+++..+++.++|+
T Consensus 5 s~~eAl~~ak~e~K~l---lVylhs~~~~~~~~fc~~~l~~~~v~~~ln--~~fv~w~~dv~~~eg~~la~~l~~~~~P~ 79 (116)
T cd02991 5 TYSQALNDAKQELRFL---LVYLHGDDHQDTDEFCRNTLCAPEVIEYIN--TRMLFWACSVAKPEGYRVSQALRERTYPF 79 (116)
T ss_pred cHHHHHHHHHhhCCEE---EEEEeCCCCccHHHHHHHHcCCHHHHHHHH--cCEEEEEEecCChHHHHHHHHhCCCCCCE
Confidence 5777888777789999 9999999 8888876553 3344433 368888888864 456888999999999
Q ss_pred EEEe--eCC--eEEeeEecC-CHHHHHHHHHHHhh
Q 032978 94 FLLM--REG--AVVDKLVGA-NPEEIRKRIDSFVQ 123 (130)
Q Consensus 94 ~~~~--~~g--~~~~~~~g~-~~~~l~~~i~~~~~ 123 (130)
++++ +++ +.+.+..|. ++++|...+.....
T Consensus 80 ~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 80 LAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred EEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 8888 233 457888899 99999999888754
No 143
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=2.2e-08 Score=71.11 Aligned_cols=110 Identities=22% Similarity=0.450 Sum_probs=89.0
Q ss_pred hcCCCeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcC----CChhhhhhhHHHHHHHHhC----C-----CeEEEEEe
Q 032978 9 QNKSRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAI----WCMPSVAMNPLFEELASAY----P-----DVLFLSVD 75 (130)
Q Consensus 9 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~----~C~~C~~~~~~l~~l~~~~----~-----~v~~~~vd 75 (130)
.++.+++.+ +++.|.+.+...+ ++..+ +++|+|. .|+-|+.+..++..+++.+ + ++-|..||
T Consensus 37 ts~~~VI~~-n~d~~~~~v~~~p-rNys~---IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd 111 (331)
T KOG2603|consen 37 TSESGVIRM-NDDKFSKFVRPPP-RNYSL---IVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVD 111 (331)
T ss_pred cCCCCeEEe-cCcchhhhccCCC-CCeEE---EEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEe
Confidence 467889999 8999999998553 77888 8999975 5999999999999999876 2 37899999
Q ss_pred ccCcHhHHHhcCCCCCCEEEEee--CCeEE------eeEecCCHHHHHHHHHHHhh
Q 032978 76 VDDVKDVASKLEVKAMPTFLLMR--EGAVV------DKLVGANPEEIRKRIDSFVQ 123 (130)
Q Consensus 76 ~~~~~~~~~~~~v~~~P~~~~~~--~g~~~------~~~~g~~~~~l~~~i~~~~~ 123 (130)
.++.+++.+++++++.|+++.|. .|+.. ....|..++++.+|++...+
T Consensus 112 ~~e~p~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tk 167 (331)
T KOG2603|consen 112 YDESPQVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTK 167 (331)
T ss_pred ccccHHHHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhh
Confidence 99999999999999999999992 23222 22223358999999988754
No 144
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.85 E-value=3.3e-08 Score=63.58 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=34.0
Q ss_pred CCceEeEEeEE-EcCCChhhhhhhHHHHHHHHhC--CCeEEEEEeccC
Q 032978 34 GCPVRNVVVHF-TAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDD 78 (130)
Q Consensus 34 ~~~~~~~vv~f-~~~~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~ 78 (130)
++++ +|.| +++||+.|+...+.|.++.+++ .++.++.|+.+.
T Consensus 23 ~~~~---vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~ 67 (149)
T cd02970 23 EGPV---VVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPES 67 (149)
T ss_pred CCCE---EEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCC
Confidence 3555 4555 6999999999999999999888 569999998654
No 145
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.85 E-value=3.8e-08 Score=66.08 Aligned_cols=42 Identities=14% Similarity=0.197 Sum_probs=36.6
Q ss_pred cCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC--CCeEEEEEecc
Q 032978 32 NQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVD 77 (130)
Q Consensus 32 ~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~ 77 (130)
++++++ +|.|||+||+.|+ ..+.|+++.++| .++.++.+.++
T Consensus 23 ~~GKvv---LVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 23 YAGNVL---LIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred hCCCEE---EEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeecc
Confidence 378999 9999999999996 588999999998 36999998764
No 146
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.82 E-value=2.2e-08 Score=58.47 Aligned_cols=60 Identities=15% Similarity=0.298 Sum_probs=45.3
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcH-----hHHHhcCCCCCCEEEEeeCCeEE
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVK-----DVASKLEVKAMPTFLLMREGAVV 103 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~-----~~~~~~~v~~~P~~~~~~~g~~~ 103 (130)
|+.|+++||++|+.+.+.|+++.-. +.+.++.+|.+.+. .+.+.+++.++|++++ +|+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~i 65 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKFI 65 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 4679999999999999999998622 34778888876543 2556678999999744 66554
No 147
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.82 E-value=9.8e-08 Score=64.35 Aligned_cols=86 Identities=13% Similarity=0.133 Sum_probs=66.7
Q ss_pred CCCceEeEEeEEE-cCCChhhhhhhHHHHHHHHhC--CCeEEEEEeccC-------------------------cHhHHH
Q 032978 33 QGCPVRNVVVHFT-AIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDD-------------------------VKDVAS 84 (130)
Q Consensus 33 ~~~~~~~~vv~f~-~~~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~-------------------------~~~~~~ 84 (130)
.++++ ||+|| +.||+.|....+.|.++..++ .++.++.|+.+. ...+++
T Consensus 30 ~Gk~v---vL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~ 106 (187)
T PRK10382 30 EGRWS---VFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTR 106 (187)
T ss_pred CCCeE---EEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHH
Confidence 78899 99999 999999999999999999888 468888887543 236778
Q ss_pred hcCCC----CC--CEEEEe-eCCeEEeeEec-----CCHHHHHHHHHHH
Q 032978 85 KLEVK----AM--PTFLLM-REGAVVDKLVG-----ANPEEIRKRIDSF 121 (130)
Q Consensus 85 ~~~v~----~~--P~~~~~-~~g~~~~~~~g-----~~~~~l~~~i~~~ 121 (130)
.|++. ++ |+.+++ ++|++...+.. .+.+++...++.+
T Consensus 107 ~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 107 NFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred HcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 88883 55 876666 68887766543 2678888888665
No 148
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.81 E-value=5.3e-08 Score=62.11 Aligned_cols=75 Identities=20% Similarity=0.180 Sum_probs=59.3
Q ss_pred CCCceEeEEeEEE-cCCChhhhhhhHHHHHHHHhC--CCeEEEEEeccC----------------------cHhHHHhcC
Q 032978 33 QGCPVRNVVVHFT-AIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDD----------------------VKDVASKLE 87 (130)
Q Consensus 33 ~~~~~~~~vv~f~-~~~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~----------------------~~~~~~~~~ 87 (130)
.++++ +|+|| +.||+.|....+.+.++.+++ .++.|+.|..+. ...+.+.|+
T Consensus 21 ~gk~~---ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 97 (140)
T cd02971 21 KGKWV---VLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYG 97 (140)
T ss_pred CCCeE---EEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcC
Confidence 67899 99999 789999999999999999887 568888887543 235667788
Q ss_pred CCCCC---------EEEEe-eCCeEEeeEecCC
Q 032978 88 VKAMP---------TFLLM-REGAVVDKLVGAN 110 (130)
Q Consensus 88 v~~~P---------~~~~~-~~g~~~~~~~g~~ 110 (130)
+...| +.+++ ++|+.+..+.|..
T Consensus 98 ~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~ 130 (140)
T cd02971 98 VLIEKSAGGGLAARATFIIDPDGKIRYVEVEPL 130 (140)
T ss_pred CccccccccCceeEEEEEECCCCcEEEEEecCC
Confidence 77666 55555 6799998888874
No 149
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.80 E-value=2.7e-09 Score=72.94 Aligned_cols=101 Identities=22% Similarity=0.453 Sum_probs=82.9
Q ss_pred cCCCeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCC--CeEEEEEeccCcHhHHHhcC
Q 032978 10 NKSRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYP--DVLFLSVDVDDVKDVASKLE 87 (130)
Q Consensus 10 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~--~v~~~~vd~~~~~~~~~~~~ 87 (130)
..+.+..+ +.++|...+. +. |++.|+++|||.|+...+.|+.++.--. +|.+..||++.++-+.-+|-
T Consensus 22 r~s~~~~~-~eenw~~~l~-----ge----wmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~ 91 (248)
T KOG0913|consen 22 RSSKLTRI-DEENWKELLT-----GE----WMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFL 91 (248)
T ss_pred ccceeEEe-cccchhhhhc-----hH----HHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeE
Confidence 34577778 8889988775 22 3689999999999999999999976432 59999999999999999999
Q ss_pred CCCCCEEEEeeCCeEEeeEecC-CHHHHHHHHHHH
Q 032978 88 VKAMPTFLLMREGAVVDKLVGA-NPEEIRKRIDSF 121 (130)
Q Consensus 88 v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~i~~~ 121 (130)
+...||+...++|..- ++.|. +...+..++..-
T Consensus 92 vtaLptIYHvkDGeFr-rysgaRdk~dfisf~~~r 125 (248)
T KOG0913|consen 92 VTALPTIYHVKDGEFR-RYSGARDKNDFISFEEHR 125 (248)
T ss_pred EEecceEEEeeccccc-cccCcccchhHHHHHHhh
Confidence 9999999999987654 45566 888888887754
No 150
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.79 E-value=6.3e-08 Score=54.74 Aligned_cols=68 Identities=24% Similarity=0.419 Sum_probs=49.2
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhc----CCCCCCEEEEeeCCeEEeeEecCCHHHHHH
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKL----EVKAMPTFLLMREGAVVDKLVGANPEEIRK 116 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~----~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~ 116 (130)
++.|+++||++|..+...+++. ++.+..++++..+....++ ++..+|++++ +|+ ...|.+.+.|.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~---~i~g~~~~~l~~ 71 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-----GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE---HLSGFRPDKLRA 71 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-----CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE---EEecCCHHHHHh
Confidence 5789999999999988877663 5667777877665544443 6789999876 443 445778777776
Q ss_pred HH
Q 032978 117 RI 118 (130)
Q Consensus 117 ~i 118 (130)
++
T Consensus 72 ~~ 73 (73)
T cd02976 72 LL 73 (73)
T ss_pred hC
Confidence 53
No 151
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.79 E-value=9.9e-08 Score=73.97 Aligned_cols=74 Identities=19% Similarity=0.247 Sum_probs=64.9
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCCCCCCEEEEeeCCeEEeeEecC-CHHHHHHHH
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGA-NPEEIRKRI 118 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~i 118 (130)
+-.|.+++|++|......+++++...|++..-.+|....++++.+|+|.++|++++ ||+.+.. |. +.+++.++|
T Consensus 480 i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~~~~--G~~~~~~~~~~~ 554 (555)
T TIGR03143 480 IKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQVYF--GKKTIEEMLELI 554 (555)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCceecCEEEE--CCEEEEe--eCCCHHHHHHhh
Confidence 55678999999999999999999998899999999999999999999999999877 6765543 54 888888776
No 152
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.78 E-value=6e-08 Score=63.64 Aligned_cols=78 Identities=17% Similarity=0.280 Sum_probs=50.0
Q ss_pred HHHHhhcCCCceEeEEeEEEcCCChhhhhhhH-HH--HHHHHhC-CCeEEEEEeccCcHhHHHhc--------CCCCCCE
Q 032978 26 FVSQANNQGCPVRNVVVHFTAIWCMPSVAMNP-LF--EELASAY-PDVLFLSVDVDDVKDVASKL--------EVKAMPT 93 (130)
Q Consensus 26 ~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~-~l--~~l~~~~-~~v~~~~vd~~~~~~~~~~~--------~v~~~P~ 93 (130)
++..+..++|++ +|.++.+||..|+.|.. .+ .++++.. .+..-+.+|.++.+++...| +..+.|+
T Consensus 29 a~~~Ak~e~KpI---fl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl 105 (163)
T PF03190_consen 29 ALEKAKKENKPI---FLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPL 105 (163)
T ss_dssp HHHHHHHHT--E---EEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSE
T ss_pred HHHHHHhcCCcE---EEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCc
Confidence 334443478999 99999999999998886 22 2333333 35788889999999998877 7889999
Q ss_pred EEEe-eCCeEEeeE
Q 032978 94 FLLM-REGAVVDKL 106 (130)
Q Consensus 94 ~~~~-~~g~~~~~~ 106 (130)
.+|. .+|+.+...
T Consensus 106 ~vfltPdg~p~~~~ 119 (163)
T PF03190_consen 106 TVFLTPDGKPFFGG 119 (163)
T ss_dssp EEEE-TTS-EEEEE
T ss_pred eEEECCCCCeeeee
Confidence 8888 788877643
No 153
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.76 E-value=1.5e-07 Score=64.18 Aligned_cols=88 Identities=16% Similarity=0.175 Sum_probs=65.8
Q ss_pred CCCceEeEEe-EEEcCCChhhhhhhHHHHHHHHhC--CCeEEEEEeccC---------------------------cHhH
Q 032978 33 QGCPVRNVVV-HFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDD---------------------------VKDV 82 (130)
Q Consensus 33 ~~~~~~~~vv-~f~~~~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~---------------------------~~~~ 82 (130)
.++.+ +| .||++||+.|....+.|.++.+++ .++.++.|+.+. ...+
T Consensus 26 ~gk~v---vL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~i 102 (202)
T PRK13190 26 KGKWV---LLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKEL 102 (202)
T ss_pred CCCEE---EEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHH
Confidence 67766 65 689999999999999999998887 367788776542 2356
Q ss_pred HHhcCCC------CCCEEEEe-eCCeEEeeE-----ecCCHHHHHHHHHHHhh
Q 032978 83 ASKLEVK------AMPTFLLM-REGAVVDKL-----VGANPEEIRKRIDSFVQ 123 (130)
Q Consensus 83 ~~~~~v~------~~P~~~~~-~~g~~~~~~-----~g~~~~~l~~~i~~~~~ 123 (130)
++.|++. .+|+.+++ ++|++.... .|.+.+++...|+.+..
T Consensus 103 a~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~ 155 (202)
T PRK13190 103 AREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQV 155 (202)
T ss_pred HHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 7788874 47987777 678776544 24478888888887753
No 154
>PRK15000 peroxidase; Provisional
Probab=98.75 E-value=2e-07 Score=63.44 Aligned_cols=86 Identities=17% Similarity=0.333 Sum_probs=66.6
Q ss_pred CCCceEeEEeEEEcC-CChhhhhhhHHHHHHHHhC--CCeEEEEEeccCc----------------------------Hh
Q 032978 33 QGCPVRNVVVHFTAI-WCMPSVAMNPLFEELASAY--PDVLFLSVDVDDV----------------------------KD 81 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~-~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~~----------------------------~~ 81 (130)
+++++ ||+||.. ||+.|....+.|.++.+++ .++.++.|+.+.. ..
T Consensus 33 ~gk~v---vL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ 109 (200)
T PRK15000 33 NGKTT---VLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKRE 109 (200)
T ss_pred CCCEE---EEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcH
Confidence 57899 9999994 9999999999999999888 4688888876531 24
Q ss_pred HHHhcCCC------CCCEEEEe-eCCeEEeeEecC-----CHHHHHHHHHHH
Q 032978 82 VASKLEVK------AMPTFLLM-REGAVVDKLVGA-----NPEEIRKRIDSF 121 (130)
Q Consensus 82 ~~~~~~v~------~~P~~~~~-~~g~~~~~~~g~-----~~~~l~~~i~~~ 121 (130)
+++.|++. .+|..+++ ++|+......+. +.+++...++.+
T Consensus 110 ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 110 IQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred HHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 56678876 68876666 689888776653 567777777665
No 155
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.72 E-value=1.8e-07 Score=55.33 Aligned_cols=75 Identities=21% Similarity=0.299 Sum_probs=54.7
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcH----hHHHhcCC--CCCCEEEEeeCCeEEeeEecCCHHHH
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVK----DVASKLEV--KAMPTFLLMREGAVVDKLVGANPEEI 114 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~----~~~~~~~v--~~~P~~~~~~~g~~~~~~~g~~~~~l 114 (130)
|+.|+.+|||+|.++...|+++..+++++.+..+|++... ++...++- ..+|++++ +|+.+. | .++|
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~ig---G--~~dl 74 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHVG---G--CTDF 74 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEec---C--HHHH
Confidence 6789999999999999999999877667888888887533 45555563 78999754 565532 2 3666
Q ss_pred HHHHHHHh
Q 032978 115 RKRIDSFV 122 (130)
Q Consensus 115 ~~~i~~~~ 122 (130)
.+++++..
T Consensus 75 ~~~~~~~~ 82 (86)
T TIGR02183 75 EQLVKENF 82 (86)
T ss_pred HHHHHhcc
Confidence 66666543
No 156
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.70 E-value=7.7e-08 Score=61.56 Aligned_cols=42 Identities=24% Similarity=0.315 Sum_probs=36.8
Q ss_pred CCCceEeEEeEEEcCCChh-hhhhhHHHHHHHHhCC-----CeEEEEEecc
Q 032978 33 QGCPVRNVVVHFTAIWCMP-SVAMNPLFEELASAYP-----DVLFLSVDVD 77 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~-C~~~~~~l~~l~~~~~-----~v~~~~vd~~ 77 (130)
+++++ +|.||++||+. |....+.+.++.+++. ++.++.|..+
T Consensus 21 ~gk~~---vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPV---LVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEE---EEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 67899 99999999997 9999999999998883 3888888764
No 157
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.69 E-value=3.3e-07 Score=70.53 Aligned_cols=77 Identities=19% Similarity=0.296 Sum_probs=65.6
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCCCCCCEEEEeeCCeEEeeEecC-CHHHHHHHHH
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGA-NPEEIRKRID 119 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~i~ 119 (130)
+..|++++||+|......+.+++...|++.+-.+|...+++++.+|++.++|++++ +|+.+. .|. ..+++.+.+.
T Consensus 120 i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~~--~g~~~~~~~~~~~~ 195 (517)
T PRK15317 120 FETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVPTVFL--NGEEFG--QGRMTLEEILAKLD 195 (517)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccCEEEE--CCcEEE--ecCCCHHHHHHHHh
Confidence 78899999999999999999999988999999999999999999999999999866 565443 355 6677777766
Q ss_pred HH
Q 032978 120 SF 121 (130)
Q Consensus 120 ~~ 121 (130)
+.
T Consensus 196 ~~ 197 (517)
T PRK15317 196 TG 197 (517)
T ss_pred cc
Confidence 53
No 158
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.67 E-value=4.1e-07 Score=58.60 Aligned_cols=40 Identities=25% Similarity=0.335 Sum_probs=33.1
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEe
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVD 75 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd 75 (130)
..+.+ |+.|+.++||+|+.+.+.++++...++++.+...+
T Consensus 4 ~a~~~---i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~ 43 (154)
T cd03023 4 NGDVT---IVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKE 43 (154)
T ss_pred CCCEE---EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEe
Confidence 45677 99999999999999999999988877766555554
No 159
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=98.67 E-value=2.6e-07 Score=65.00 Aligned_cols=83 Identities=16% Similarity=0.247 Sum_probs=59.1
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEecc-----------------------------------
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVD----------------------------------- 77 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~----------------------------------- 77 (130)
.++.+ |+.|+.+.||+|+++.+.+..+.+. .+|.+..+...
T Consensus 116 ~ak~~---I~vFtDp~CpyC~kl~~~l~~~~~~-g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~ 191 (251)
T PRK11657 116 DAPRI---VYVFADPNCPYCKQFWQQARPWVDS-GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGL 191 (251)
T ss_pred CCCeE---EEEEECCCChhHHHHHHHHHHHhhc-CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCC
Confidence 45667 8999999999999999999887654 34666555310
Q ss_pred ---------------CcHhHHHhcCCCCCCEEEEeeCCeEEeeEecC-CHHHHHHHHH
Q 032978 78 ---------------DVKDVASKLEVKAMPTFLLMREGAVVDKLVGA-NPEEIRKRID 119 (130)
Q Consensus 78 ---------------~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~i~ 119 (130)
++..+.+++|++++|++++-.....+....|. .+++|.+.+.
T Consensus 192 ~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 192 KPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred CccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhC
Confidence 01246778999999998887532344445677 7788887764
No 160
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=98.67 E-value=3.9e-07 Score=61.21 Aligned_cols=108 Identities=19% Similarity=0.321 Sum_probs=86.4
Q ss_pred hhhhcCCCeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHh
Q 032978 6 QEQQNKSRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASK 85 (130)
Q Consensus 6 ~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~ 85 (130)
+.....+.|.+| +..+|-+.+..+. .+-.| ||..|...-+.|+-+...|+.++.+||.++|+.+-....- ..
T Consensus 85 ~~k~kfG~V~~I-Sg~dyv~EVT~As-~gvwV---vvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~cI---pN 156 (240)
T KOG3170|consen 85 AEKAKFGEVFPI-SGPDYVKEVTKAS-EGVWV---VVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTCI---PN 156 (240)
T ss_pred HHHhcccceeec-cchHHHHHHHhcc-CccEE---EEEeeccccHHHHHHHHHHHHHhhcCCcceEEeccccccc---CC
Confidence 455678889999 7888877777764 67888 9999999999999999999999999999999998766542 45
Q ss_pred cCCCCCCEEEEeeCCeEEeeEecC--------CHHHHHHHHHHH
Q 032978 86 LEVKAMPTFLLMREGAVVDKLVGA--------NPEEIRKRIDSF 121 (130)
Q Consensus 86 ~~v~~~P~~~~~~~g~~~~~~~g~--------~~~~l~~~i~~~ 121 (130)
|.-...||+++|..|.....+.|+ +.++++.++-+.
T Consensus 157 YPe~nlPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 157 YPESNLPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQA 200 (240)
T ss_pred CcccCCCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence 666789999999988776655543 467777666543
No 161
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.67 E-value=1.4e-07 Score=63.89 Aligned_cols=76 Identities=22% Similarity=0.270 Sum_probs=54.7
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEec------------------------------------
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDV------------------------------------ 76 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~------------------------------------ 76 (130)
.++.. ++.|+.+.||+|+++.+.+.+ ...++.+..+..
T Consensus 76 ~~~~~---i~~f~D~~Cp~C~~~~~~l~~---~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~ 149 (197)
T cd03020 76 NGKRV---VYVFTDPDCPYCRKLEKELKP---NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPP 149 (197)
T ss_pred CCCEE---EEEEECCCCccHHHHHHHHhh---ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCC
Confidence 35677 999999999999999999887 123444444421
Q ss_pred ---------cCcHhHHHhcCCCCCCEEEEeeCCeEEeeEecC-CHHHHHHHH
Q 032978 77 ---------DDVKDVASKLEVKAMPTFLLMREGAVVDKLVGA-NPEEIRKRI 118 (130)
Q Consensus 77 ---------~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~i 118 (130)
+++..++++++++++|+++ +.+|+.+ .|. ++++|.++|
T Consensus 150 ~~~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~~---~G~~~~~~l~~~L 197 (197)
T cd03020 150 PAASCDNPVAANLALGRQLGVNGTPTIV-LADGRVV---PGAPPAAQLEALL 197 (197)
T ss_pred CccccCchHHHHHHHHHHcCCCcccEEE-ECCCeEe---cCCCCHHHHHhhC
Confidence 1123678899999999987 7778775 366 677777653
No 162
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.65 E-value=3.2e-07 Score=50.45 Aligned_cols=55 Identities=22% Similarity=0.395 Sum_probs=42.4
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHH----hcCCCCCCEEEEeeCCeE
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVAS----KLEVKAMPTFLLMREGAV 102 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~----~~~v~~~P~~~~~~~g~~ 102 (130)
|+.|+.+||++|++....|++. ++.+-.+|++..++..+ ..+..++|++++ +|+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~-----~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK-----GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc-----CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEE
Confidence 4679999999999998888443 58888888887754433 349999999776 6664
No 163
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.60 E-value=1.2e-06 Score=59.78 Aligned_cols=82 Identities=20% Similarity=0.250 Sum_probs=60.8
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhC--CCeEEEEEeccC---------------------------cHhHHHhcCCC--
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDD---------------------------VKDVASKLEVK-- 89 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~---------------------------~~~~~~~~~v~-- 89 (130)
++.||++||+.|....+.|.++.+++ .++.++.|+.+. ...+++.|++.
T Consensus 30 lf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~~~ 109 (203)
T cd03016 30 LFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMIDP 109 (203)
T ss_pred EEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCccc
Confidence 55889999999999999999999888 468888887653 23567788875
Q ss_pred --CCC----E-EEEeeCCeEEeeEec-----CCHHHHHHHHHHHh
Q 032978 90 --AMP----T-FLLMREGAVVDKLVG-----ANPEEIRKRIDSFV 122 (130)
Q Consensus 90 --~~P----~-~~~~~~g~~~~~~~g-----~~~~~l~~~i~~~~ 122 (130)
+.| . |++-++|+....+.+ .+.+++...|+.+-
T Consensus 110 ~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq 154 (203)
T cd03016 110 DAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQ 154 (203)
T ss_pred cCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 334 3 444478888766654 36778888887763
No 164
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.59 E-value=1.1e-06 Score=60.53 Aligned_cols=87 Identities=17% Similarity=0.268 Sum_probs=65.2
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC--CCeEEEEEeccCc---------------------------HhHH
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDDV---------------------------KDVA 83 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~~---------------------------~~~~ 83 (130)
.++.+ |++.|+++||+.|....+.|.++..+| .++.++.|+++.. ..++
T Consensus 27 ~Gk~v--VL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va 104 (215)
T PRK13599 27 AGKWF--VLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVS 104 (215)
T ss_pred CCCeE--EEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHH
Confidence 56654 057889999999999999999999988 4788888876542 2567
Q ss_pred HhcCCC-------CCCEEEEe-eCCeEEeeEe-----cCCHHHHHHHHHHH
Q 032978 84 SKLEVK-------AMPTFLLM-REGAVVDKLV-----GANPEEIRKRIDSF 121 (130)
Q Consensus 84 ~~~~v~-------~~P~~~~~-~~g~~~~~~~-----g~~~~~l~~~i~~~ 121 (130)
+.|++. ..|+.+++ ++|+....+. |.+.+++...|+.+
T Consensus 105 ~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 105 NQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred HHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 778873 57887777 6788776553 23678888888765
No 165
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.59 E-value=2.9e-06 Score=61.40 Aligned_cols=104 Identities=16% Similarity=0.218 Sum_probs=74.6
Q ss_pred CCCeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhh------HHHHHHHHhC---CCeEEEEEeccCcHh
Q 032978 11 KSRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMN------PLFEELASAY---PDVLFLSVDVDDVKD 81 (130)
Q Consensus 11 ~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~------~~l~~l~~~~---~~v~~~~vd~~~~~~ 81 (130)
...++.+ +..+|.++++.. ... +|+||.+-- ..+... ..+-+|+.+. .++.|+.||..+...
T Consensus 33 kDRVi~L-neKNfk~~lKky----d~l---~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~k 103 (383)
T PF01216_consen 33 KDRVIDL-NEKNFKRALKKY----DVL---VLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAK 103 (383)
T ss_dssp S--CEEE--TTTHHHHHHH-----SEE---EEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHH
T ss_pred ccceEEc-chhHHHHHHHhh----cEE---EEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHH
Confidence 3468999 999999999853 677 788887753 333222 3233444433 579999999999999
Q ss_pred HHHhcCCCCCCEEEEeeCCeEEeeEecCCHHHHHHHHHHHhh
Q 032978 82 VASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDSFVQ 123 (130)
Q Consensus 82 ~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~~i~~~~~ 123 (130)
+++++|+...+++.+|++|+.+...+-.+++.|..||-.++.
T Consensus 104 lAKKLgv~E~~SiyVfkd~~~IEydG~~saDtLVeFl~dl~e 145 (383)
T PF01216_consen 104 LAKKLGVEEEGSIYVFKDGEVIEYDGERSADTLVEFLLDLLE 145 (383)
T ss_dssp HHHHHT--STTEEEEEETTEEEEE-S--SHHHHHHHHHHHHS
T ss_pred HHHhcCccccCcEEEEECCcEEEecCccCHHHHHHHHHHhcc
Confidence 999999999999999999999997744499999999998875
No 166
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=98.59 E-value=2.7e-07 Score=62.62 Aligned_cols=106 Identities=16% Similarity=0.326 Sum_probs=85.4
Q ss_pred CCCeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCCCC
Q 032978 11 KSRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKA 90 (130)
Q Consensus 11 ~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~ 90 (130)
.+.|.++++..+|-..+.... +...+ +|.+|-+.-+.|-.+...+.-|+.+||.++|+++-.+... ...+|...+
T Consensus 137 ~~~V~El~~gkqfld~idke~-ks~~i---~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~~g-as~~F~~n~ 211 (273)
T KOG3171|consen 137 YGFVYELETGKQFLDTIDKEL-KSTTI---VVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNTG-ASDRFSLNV 211 (273)
T ss_pred cceEEEeccchhHHHHHhccc-ceEEE---EEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeecccc-chhhhcccC
Confidence 346999999999999887532 23345 8999999999999999999999999999999999776553 567899999
Q ss_pred CCEEEEeeCCeEEeeEecC--------CHHHHHHHHHHH
Q 032978 91 MPTFLLMREGAVVDKLVGA--------NPEEIRKRIDSF 121 (130)
Q Consensus 91 ~P~~~~~~~g~~~~~~~g~--------~~~~l~~~i~~~ 121 (130)
+|++++|++|..+.-+... ....|++|++++
T Consensus 212 lP~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 212 LPTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred CceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 9999999999988654432 345677777765
No 167
>PRK13189 peroxiredoxin; Provisional
Probab=98.58 E-value=1.1e-06 Score=60.75 Aligned_cols=88 Identities=16% Similarity=0.264 Sum_probs=63.7
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC--CCeEEEEEeccC---------------------------cHhHH
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDD---------------------------VKDVA 83 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~---------------------------~~~~~ 83 (130)
.++.+ +++.|+++||+.|....+.|.++..++ .++.++.|+.+. ...++
T Consensus 34 ~Gk~v--vL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia 111 (222)
T PRK13189 34 KGKWF--VLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIA 111 (222)
T ss_pred CCCeE--EEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHH
Confidence 56655 045778999999999999999998888 468888887553 12567
Q ss_pred HhcCCC-------CCCEEEEe-eCCeEEeeEe-----cCCHHHHHHHHHHHh
Q 032978 84 SKLEVK-------AMPTFLLM-REGAVVDKLV-----GANPEEIRKRIDSFV 122 (130)
Q Consensus 84 ~~~~v~-------~~P~~~~~-~~g~~~~~~~-----g~~~~~l~~~i~~~~ 122 (130)
+.|++. .+|+.+++ ++|+...... |.+.+++...|+.+.
T Consensus 112 ~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 163 (222)
T PRK13189 112 KKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQ 163 (222)
T ss_pred HHhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 788865 45766666 6888776654 336788888887663
No 168
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.56 E-value=1.4e-06 Score=60.06 Aligned_cols=86 Identities=17% Similarity=0.210 Sum_probs=63.7
Q ss_pred CCCceEeEEe-EEEcCCChhhhhhhHHHHHHHHhC--CCeEEEEEeccCc---------------------------HhH
Q 032978 33 QGCPVRNVVV-HFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDDV---------------------------KDV 82 (130)
Q Consensus 33 ~~~~~~~~vv-~f~~~~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~~---------------------------~~~ 82 (130)
.++.+ +| .|+++||+.|....+.|.++..++ .++.++.|+++.. ..+
T Consensus 32 ~GK~v---vLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~i 108 (215)
T PRK13191 32 KGRWF---VLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNV 108 (215)
T ss_pred CCCcE---EEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHH
Confidence 56766 55 889999999999999999999988 4688888876532 256
Q ss_pred HHhcCCC-------CCCEEEEe-eCCeEEeeEecC-----CHHHHHHHHHHH
Q 032978 83 ASKLEVK-------AMPTFLLM-REGAVVDKLVGA-----NPEEIRKRIDSF 121 (130)
Q Consensus 83 ~~~~~v~-------~~P~~~~~-~~g~~~~~~~g~-----~~~~l~~~i~~~ 121 (130)
++.|++. ..|+.+++ ++|++.....+. +.+++...|+.+
T Consensus 109 a~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 109 AKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred HHHcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 6677763 35766666 688877654332 678888888765
No 169
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.56 E-value=1.4e-06 Score=67.08 Aligned_cols=77 Identities=14% Similarity=0.304 Sum_probs=65.5
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCCCCCCEEEEeeCCeEEeeEecC-CHHHHHHHHH
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGA-NPEEIRKRID 119 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~i~ 119 (130)
+..|+++.||+|......+.+++...|++..-.+|....++++.+|++.++|++++ +|+.+ +.|. ..+++.+.+.
T Consensus 121 i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~~~~~~l~ 196 (515)
T TIGR03140 121 FETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVFL--NGEEF--HNGRMDLAELLEKLE 196 (515)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEEE--CCcEE--EecCCCHHHHHHHHh
Confidence 78899999999999999999999998999999999999999999999999999876 55544 3355 6677766665
Q ss_pred HH
Q 032978 120 SF 121 (130)
Q Consensus 120 ~~ 121 (130)
+.
T Consensus 197 ~~ 198 (515)
T TIGR03140 197 ET 198 (515)
T ss_pred hc
Confidence 54
No 170
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.54 E-value=7.2e-06 Score=54.44 Aligned_cols=102 Identities=21% Similarity=0.357 Sum_probs=79.4
Q ss_pred CCCeEEecChhhHHHHHHHhhcCCCc-eEeEEeEEEcCCChhhhhhhHHHHHHHHhCC-CeEEEEEeccCcHhHHHhcCC
Q 032978 11 KSRVVKVDSVESWETFVSQANNQGCP-VRNVVVHFTAIWCMPSVAMNPLFEELASAYP-DVLFLSVDVDDVKDVASKLEV 88 (130)
Q Consensus 11 ~~~v~~i~~~~~~~~~~~~~~~~~~~-~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~-~v~~~~vd~~~~~~~~~~~~v 88 (130)
-..+.++ +..++..... .+.+ + ++.|..........+...++.+++++. .+.|+.+|.+..+.+++.|++
T Consensus 76 ~P~v~~~-t~~n~~~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i 147 (184)
T PF13848_consen 76 FPLVPEL-TPENFEKLFS----SPKPPV---LILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGI 147 (184)
T ss_dssp STSCEEE-STTHHHHHHS----TSSEEE---EEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTT
T ss_pred ccccccc-chhhHHHHhc----CCCceE---EEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCC
Confidence 3447777 7778877776 4444 6 777777778888999999999999995 499999999998999999999
Q ss_pred C--CCCEEEEee--CCeEEeeEecC-CHHHHHHHHHH
Q 032978 89 K--AMPTFLLMR--EGAVVDKLVGA-NPEEIRKRIDS 120 (130)
Q Consensus 89 ~--~~P~~~~~~--~g~~~~~~~g~-~~~~l~~~i~~ 120 (130)
. .+|+++++. .++......+. +.+.|.+|++.
T Consensus 148 ~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 148 DEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp TTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred CCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 8 899999885 44432223455 88999999863
No 171
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.54 E-value=6.7e-07 Score=51.03 Aligned_cols=67 Identities=13% Similarity=0.357 Sum_probs=50.2
Q ss_pred eEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhc---CCCCCCEEEEeeCCeEEeeEecCCHHHHHHH
Q 032978 42 VHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKL---EVKAMPTFLLMREGAVVDKLVGANPEEIRKR 117 (130)
Q Consensus 42 v~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~---~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~~ 117 (130)
..|+.++|+.|++....|++. ++.|-.+|+++++.....+ |..++|++++ +|+ ....|.+++.|.++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~--~~~~G~~~~~~~~~ 71 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH-----GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD--LSWSGFRPDKLKAL 71 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC--cEEeccCHHHHHhc
Confidence 468899999999999988753 6788888988877665544 7789999755 343 24557788877653
No 172
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.51 E-value=2.8e-06 Score=60.07 Aligned_cols=86 Identities=19% Similarity=0.234 Sum_probs=65.0
Q ss_pred CCCceEeEEeEEE-cCCChhhhhhhHHHHHHHHhC--CCeEEEEEeccC----------------------------cHh
Q 032978 33 QGCPVRNVVVHFT-AIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDD----------------------------VKD 81 (130)
Q Consensus 33 ~~~~~~~~vv~f~-~~~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~----------------------------~~~ 81 (130)
.++++ |++|| +.||+.|....+.|.++.+++ .++.++.|..+. +..
T Consensus 97 kgk~v---VL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~ 173 (261)
T PTZ00137 97 KDSYG---LLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISRE 173 (261)
T ss_pred CCCeE---EEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChH
Confidence 56778 88888 899999999999999998888 467788777653 135
Q ss_pred HHHhcCCC-----CCCEEEEe-eCCeEEeeEe-----cCCHHHHHHHHHHH
Q 032978 82 VASKLEVK-----AMPTFLLM-REGAVVDKLV-----GANPEEIRKRIDSF 121 (130)
Q Consensus 82 ~~~~~~v~-----~~P~~~~~-~~g~~~~~~~-----g~~~~~l~~~i~~~ 121 (130)
+++.||+. ..|+.+++ ++|+...... |.+.+++...|+.+
T Consensus 174 iakayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 174 VSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HHHHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 77888885 47887777 6888887653 22677777777765
No 173
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.50 E-value=2.6e-06 Score=49.81 Aligned_cols=73 Identities=18% Similarity=0.236 Sum_probs=55.4
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHH---HhcCCCCCCEEEEeeCCeEEeeEecCCHHHHHHH
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVA---SKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKR 117 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~---~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~~ 117 (130)
+..|+.+||++|+.....|++ .++.|-.+|++..++.. +..+...+|++++ ++ ....|.+++.|.++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~---~~~~Gf~~~~l~~~ 72 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GD---LSWSGFRPDMINRL 72 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CC---EEEecCCHHHHHHH
Confidence 567999999999998888854 27888889998877543 3347789999865 44 33558899999988
Q ss_pred HHHHhh
Q 032978 118 IDSFVQ 123 (130)
Q Consensus 118 i~~~~~ 123 (130)
+.....
T Consensus 73 ~~~~~~ 78 (81)
T PRK10329 73 HPAPHA 78 (81)
T ss_pred HHhhhh
Confidence 876643
No 174
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=98.46 E-value=3.6e-06 Score=51.63 Aligned_cols=90 Identities=18% Similarity=0.271 Sum_probs=67.5
Q ss_pred CCCeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhH---HHHHHHHhCCC-eEEEEEeccCcHhHHHhc
Q 032978 11 KSRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNP---LFEELASAYPD-VLFLSVDVDDVKDVASKL 86 (130)
Q Consensus 11 ~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~---~l~~l~~~~~~-v~~~~vd~~~~~~~~~~~ 86 (130)
.-....+ +.++++..+.. +... |.|++.+|..+..... ++.+|.+.+++ +..+.++......+..+|
T Consensus 8 ~~g~~~v-d~~~ld~~l~~----~~~~----vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~ 78 (107)
T PF07449_consen 8 RHGWPRV-DADTLDAFLAA----PGDA----VLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARF 78 (107)
T ss_dssp T-TEEEE--CCCHHHHHHC----CSCE----EEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHH
T ss_pred hcCCeee-chhhHHHHHhC----CCcE----EEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHh
Confidence 3466777 78889999874 3444 4566666655544444 88899988965 778888878888999999
Q ss_pred CCCCCCEEEEeeCCeEEeeEecC
Q 032978 87 EVKAMPTFLLMREGAVVDKLVGA 109 (130)
Q Consensus 87 ~v~~~P~~~~~~~g~~~~~~~g~ 109 (130)
++...|+++++++|+.+....|.
T Consensus 79 gv~~~PaLvf~R~g~~lG~i~gi 101 (107)
T PF07449_consen 79 GVRRWPALVFFRDGRYLGAIEGI 101 (107)
T ss_dssp T-TSSSEEEEEETTEEEEEEESS
T ss_pred CCccCCeEEEEECCEEEEEecCe
Confidence 99999999999999999988887
No 175
>PHA03050 glutaredoxin; Provisional
Probab=98.43 E-value=1.4e-06 Score=53.66 Aligned_cols=62 Identities=6% Similarity=0.061 Sum_probs=41.5
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccC-c----HhHHHhcCCCCCCEEEEeeCCeEEe
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD-V----KDVASKLEVKAMPTFLLMREGAVVD 104 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~-~----~~~~~~~~v~~~P~~~~~~~g~~~~ 104 (130)
|+.|+.+|||+|++....|+++.-.++.+..+.+|-.. . ..+.+..|.+.+|++++ +|+.+.
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~iG 81 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTSIG 81 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEEEe
Confidence 56799999999999999998875443344444444311 2 23445567889999755 576554
No 176
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=98.42 E-value=4.2e-06 Score=55.36 Aligned_cols=39 Identities=31% Similarity=0.542 Sum_probs=32.0
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCC-CeEEEEE
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYP-DVLFLSV 74 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~-~v~~~~v 74 (130)
.++.. |+.|+...||+|+.+.+.+..+.++++ ++.+..+
T Consensus 14 ~~~~~---i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~ 53 (178)
T cd03019 14 SGKPE---VIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKV 53 (178)
T ss_pred CCCcE---EEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEc
Confidence 45777 999999999999999999999988874 4555433
No 177
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.42 E-value=6.3e-06 Score=56.04 Aligned_cols=86 Identities=20% Similarity=0.295 Sum_probs=61.9
Q ss_pred CCCceEeEEeEEEc-CCChhhhhhhHHHHHHHHhC--CCeEEEEEeccC----------------------------cHh
Q 032978 33 QGCPVRNVVVHFTA-IWCMPSVAMNPLFEELASAY--PDVLFLSVDVDD----------------------------VKD 81 (130)
Q Consensus 33 ~~~~~~~~vv~f~~-~~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~----------------------------~~~ 81 (130)
.++.+ +|+||. .||+.|......|.++.+++ .++.++.|+.+. ..+
T Consensus 35 ~Gk~~---lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ 111 (199)
T PTZ00253 35 KGKWV---VLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKS 111 (199)
T ss_pred CCCEE---EEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhH
Confidence 67889 999994 78999999889999998888 368888887652 125
Q ss_pred HHHhcCCC------CCCEEEEe-eCCeEEeeEecC-----CHHHHHHHHHHH
Q 032978 82 VASKLEVK------AMPTFLLM-REGAVVDKLVGA-----NPEEIRKRIDSF 121 (130)
Q Consensus 82 ~~~~~~v~------~~P~~~~~-~~g~~~~~~~g~-----~~~~l~~~i~~~ 121 (130)
+++.|++. .+|..+++ ++|+......+. +.+++...|+.+
T Consensus 112 ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 112 IARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred HHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 67788875 35766655 688877765543 445555555544
No 178
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=98.42 E-value=7.1e-06 Score=53.40 Aligned_cols=80 Identities=28% Similarity=0.413 Sum_probs=61.2
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC---CCeEEEEEeccCc------------------------------
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY---PDVLFLSVDVDDV------------------------------ 79 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~---~~v~~~~vd~~~~------------------------------ 79 (130)
..+.+ |+.|++..||+|+++.+.+.++.+++ +.+.|...+....
T Consensus 11 ~a~~~---v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 87 (162)
T PF13462_consen 11 DAPIT---VTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFS 87 (162)
T ss_dssp TTSEE---EEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred CCCeE---EEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45677 99999999999999999999988887 4588888864110
Q ss_pred --------------------------------------HhHHHhcCCCCCCEEEEeeCCeEEeeEecC-CHHHHHHHHHH
Q 032978 80 --------------------------------------KDVASKLEVKAMPTFLLMREGAVVDKLVGA-NPEEIRKRIDS 120 (130)
Q Consensus 80 --------------------------------------~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~i~~ 120 (130)
...+++++|.++|++++ ||+.+ .+. +.++|.++|++
T Consensus 88 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~~---~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 88 QQENFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKYV---VGPYTIEELKELIDK 162 (162)
T ss_dssp HCHSTSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCEE---ETTTSHHHHHHHHHH
T ss_pred hhhccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEEe---CCCCCHHHHHHHHcC
Confidence 03456789999999888 88875 344 89999998875
No 179
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.39 E-value=2.2e-05 Score=49.96 Aligned_cols=107 Identities=11% Similarity=0.207 Sum_probs=76.9
Q ss_pred CeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcC--CCh-hh-hhhhHHHHHHHHhC-CC-eEEEEEeccCcHhHHHhc
Q 032978 13 RVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAI--WCM-PS-VAMNPLFEELASAY-PD-VLFLSVDVDDVKDVASKL 86 (130)
Q Consensus 13 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~--~C~-~C-~~~~~~l~~l~~~~-~~-v~~~~vd~~~~~~~~~~~ 86 (130)
.+.++++.+.++..-. ....+ +|.|.-. .|. .+ ......+++++++| ++ +.|+.+|.+....+.+.|
T Consensus 3 ~~~~l~~~~~~~~~C~----~~~~C---~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~f 75 (130)
T cd02983 3 EIIELTSEDVFEETCE----EKQLC---IIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEAL 75 (130)
T ss_pred ceEEecCHHHHHhhcc----CCCeE---EEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHc
Confidence 5778867776665443 34566 6666432 232 23 46678999999999 55 999999999999999999
Q ss_pred CCC--CCCEEEEeeCCe-EEeeEecC-CHHHHHHHHHHHhhhhc
Q 032978 87 EVK--AMPTFLLMREGA-VVDKLVGA-NPEEIRKRIDSFVQSIR 126 (130)
Q Consensus 87 ~v~--~~P~~~~~~~g~-~~~~~~g~-~~~~l~~~i~~~~~~~~ 126 (130)
|+. .+|+++++...+ ....+.|. +.+.|.+|++.++....
T Consensus 76 gl~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 76 NIGGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred CCCccCCCEEEEEecccCccccccCccCHHHHHHHHHHHHcCCc
Confidence 996 499999985443 22224455 89999999999976543
No 180
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.37 E-value=8.3e-06 Score=47.62 Aligned_cols=77 Identities=17% Similarity=0.274 Sum_probs=57.8
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCCCCCCEEEEeeCC--eEEeeEecC-CHHHHHHH
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREG--AVVDKLVGA-NPEEIRKR 117 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g--~~~~~~~g~-~~~~l~~~ 117 (130)
++.|+.+.|+-|..+...|..+.... .+.+-.+|+++++++..+|+. .+|.+.+-..+ +......+. +.+.|.+|
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~-~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~~ 79 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF-PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLRAW 79 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS-TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHHHH
Confidence 67899999999999999999987664 499999999999999999996 89996664311 101222234 89999998
Q ss_pred HH
Q 032978 118 ID 119 (130)
Q Consensus 118 i~ 119 (130)
|+
T Consensus 80 L~ 81 (81)
T PF05768_consen 80 LE 81 (81)
T ss_dssp HH
T ss_pred hC
Confidence 75
No 181
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.37 E-value=3.5e-06 Score=48.95 Aligned_cols=57 Identities=16% Similarity=0.272 Sum_probs=42.6
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCc---HhHHHhcCCCCCCEEEEeeCCeEEe
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDV---KDVASKLEVKAMPTFLLMREGAVVD 104 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~---~~~~~~~~v~~~P~~~~~~~g~~~~ 104 (130)
|+.|+.+||++|++....|++. ++.+-.+|+++. ..+....+...+|++++ +|+.+.
T Consensus 10 V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~ig 69 (79)
T TIGR02190 10 VVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKLIG 69 (79)
T ss_pred EEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEEEc
Confidence 6789999999999999988754 566667777655 34445568899999754 676543
No 182
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=98.35 E-value=7e-06 Score=56.14 Aligned_cols=40 Identities=15% Similarity=0.433 Sum_probs=32.0
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHH---HHHHHhCC-CeEEEEEe
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLF---EELASAYP-DVLFLSVD 75 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l---~~l~~~~~-~v~~~~vd 75 (130)
.+++. ||.|++-.||+|..+.+.+ +.+.+.++ ++.++.+.
T Consensus 36 ~~~~~---VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~ 79 (207)
T PRK10954 36 AGEPQ---VLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYH 79 (207)
T ss_pred CCCCe---EEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEec
Confidence 45778 9999999999999999976 77888774 56666544
No 183
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.35 E-value=3.1e-06 Score=49.11 Aligned_cols=58 Identities=17% Similarity=0.308 Sum_probs=42.7
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCc-H----hHHHhcCCCCCCEEEEeeCCeEE
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDV-K----DVASKLEVKAMPTFLLMREGAVV 103 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~-~----~~~~~~~v~~~P~~~~~~~g~~~ 103 (130)
|+.|+++|||.|+.+.+.|+++.. ...++.++.+.. . .+.+..+..++|+++ -+|+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~--~~g~~i 64 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV---KPAVVELDQHEDGSEIQDYLQELTGQRTVPNVF--IGGKFI 64 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC---CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEE--ECCEEE
Confidence 567999999999999999999865 356777776654 2 344556888999963 366554
No 184
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.33 E-value=1.5e-06 Score=52.81 Aligned_cols=57 Identities=21% Similarity=0.252 Sum_probs=38.1
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHh---H----HHhcCCCCCCEEEEeeCCeEEe
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKD---V----ASKLEVKAMPTFLLMREGAVVD 104 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~---~----~~~~~v~~~P~~~~~~~g~~~~ 104 (130)
|+.|..+|||+|+++...|.++ ++.+..+|++..+. + .+..+...+|++++ +|+.+.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~-----~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi--~g~~iG 73 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL-----GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV--GGKLVG 73 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE--CCEEEc
Confidence 4679999999999999877765 34444566654432 2 23346789999643 676554
No 185
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.30 E-value=5.2e-06 Score=46.43 Aligned_cols=57 Identities=19% Similarity=0.338 Sum_probs=42.3
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHH----hcCCCCCCEEEEeeCCeEEe
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVAS----KLEVKAMPTFLLMREGAVVD 104 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~----~~~v~~~P~~~~~~~g~~~~ 104 (130)
++.|+++||+.|+.+...|.+.. +.+..+|++.+++... ..+...+|++++ +|+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~--~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-----IEFEEIDILEDGELREELKELSGWPTVPQIFI--NGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 56799999999999999888763 6677788877664433 346678898643 676655
No 186
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.30 E-value=1.3e-05 Score=62.25 Aligned_cols=103 Identities=14% Similarity=0.142 Sum_probs=81.5
Q ss_pred hhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCCCCCCEEEEee-
Q 032978 20 VESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMR- 98 (130)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~- 98 (130)
.+++...+..- .+... ++.|+.+.|..|..+...+++++..-+.+.+...|..++.+++++|++...|++.++.
T Consensus 354 ~~~l~~~~~~l--~~~v~---l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~ 428 (555)
T TIGR03143 354 RQQLVGIFGRL--ENPVT---LLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDD 428 (555)
T ss_pred HHHHHHHHHhc--CCCEE---EEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeC
Confidence 34566666653 55556 7889999999999999999999976677999889999999999999999999999984
Q ss_pred CCeEE-eeEecC-CHHHHHHHHHHHhhhhcc
Q 032978 99 EGAVV-DKLVGA-NPEEIRKRIDSFVQSIRV 127 (130)
Q Consensus 99 ~g~~~-~~~~g~-~~~~l~~~i~~~~~~~~~ 127 (130)
+|+.. -++.|. .-.++..+|..++..+++
T Consensus 429 ~~~~~~i~f~g~P~G~Ef~s~i~~i~~~~~~ 459 (555)
T TIGR03143 429 DGNYTGLKFHGVPSGHELNSFILALYNAAGP 459 (555)
T ss_pred CCcccceEEEecCccHhHHHHHHHHHHhcCC
Confidence 55322 345566 778899999888776644
No 187
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.29 E-value=1.3e-05 Score=45.55 Aligned_cols=66 Identities=14% Similarity=0.299 Sum_probs=45.4
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHh---HHHhcCCCCCCEEEEeeCCeEEeeEecCCHHHHHHH
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKD---VASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKR 117 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~---~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~~ 117 (130)
++.|+.+||+.|.+....|++. ++.+..+|++.... +....+...+|.+++ +|+.+. | .++|.++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-----~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi--~g~~ig---g--~~~l~~~ 70 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-----GISYEEIPLGKDITGRSLRAVTGAMTVPQVFI--DGELIG---G--SDDLEKY 70 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEEECCCChhHHHHHHHhCCCCcCeEEE--CCEEEe---C--HHHHHHH
Confidence 6789999999999998888753 56677777776542 233358889999743 566543 3 4555555
Q ss_pred H
Q 032978 118 I 118 (130)
Q Consensus 118 i 118 (130)
+
T Consensus 71 l 71 (72)
T cd03029 71 F 71 (72)
T ss_pred h
Confidence 4
No 188
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.29 E-value=3.3e-06 Score=48.86 Aligned_cols=56 Identities=16% Similarity=0.294 Sum_probs=40.7
Q ss_pred eEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHh----cCCCCCCEEEEeeCCeEEe
Q 032978 42 VHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASK----LEVKAMPTFLLMREGAVVD 104 (130)
Q Consensus 42 v~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~----~~v~~~P~~~~~~~g~~~~ 104 (130)
+.|+.+|||.|......|++. ++.+-.+|++..++..++ .+..++|++++ +|+.+.
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~-----~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i--~g~~ig 61 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSK-----GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI--GDVHVG 61 (79)
T ss_pred EEEecCCChhHHHHHHHHHHc-----CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE--CCEEEc
Confidence 568999999999999998864 466666777776655443 47788999644 566543
No 189
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.27 E-value=8.8e-06 Score=46.40 Aligned_cols=57 Identities=12% Similarity=0.364 Sum_probs=42.8
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHh----HHHhcCCCCCCEEEEeeCCeEEe
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKD----VASKLEVKAMPTFLLMREGAVVD 104 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~----~~~~~~v~~~P~~~~~~~g~~~~ 104 (130)
++.|+.++|+.|+++...|++. ++.+-.+|+++.++ +.+..+...+|++++ +|+.+.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-----gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~~iG 63 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-----GLPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEKLVG 63 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 5679999999999999988863 57777888887664 444456778899755 666554
No 190
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.25 E-value=9.4e-06 Score=46.30 Aligned_cols=57 Identities=18% Similarity=0.285 Sum_probs=41.4
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHH----hcCCC-CCCEEEEeeCCeEEe
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVAS----KLEVK-AMPTFLLMREGAVVD 104 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~----~~~v~-~~P~~~~~~~g~~~~ 104 (130)
++.|+.++|+.|......|++. ++.+-.+|++..++..+ .++.. .+|++++ +|+.+.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i--~g~~ig 63 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI--GDVHIG 63 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE--CCEEEe
Confidence 5679999999999998888764 57777788877655443 34666 8998654 665543
No 191
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.15 E-value=4.7e-05 Score=47.15 Aligned_cols=98 Identities=13% Similarity=0.207 Sum_probs=70.4
Q ss_pred EecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHh---C-CCeEEEEEeccCcHhHHHhcCCCC-
Q 032978 16 KVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASA---Y-PDVLFLSVDVDDVKDVASKLEVKA- 90 (130)
Q Consensus 16 ~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~---~-~~v~~~~vd~~~~~~~~~~~~v~~- 90 (130)
++ +.++...... .+.+. .+.|+ .-..-....+.+++++++ + +.+.|+.+|.+......+.||+..
T Consensus 3 e~-t~e~~~~~~~----~~~~~---~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~ 72 (111)
T cd03072 3 EI-TFENAEELTE----EGLPF---LILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPA 72 (111)
T ss_pred cc-ccccHHHHhc----CCCCe---EEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHh
Confidence 44 5566665555 44555 55566 223346788899999999 8 459999999999888899999997
Q ss_pred -CCEEEEeeCCe--EEeeEecC-CHHHHHHHHHHHhh
Q 032978 91 -MPTFLLMREGA--VVDKLVGA-NPEEIRKRIDSFVQ 123 (130)
Q Consensus 91 -~P~~~~~~~g~--~~~~~~g~-~~~~l~~~i~~~~~ 123 (130)
.|.+.+..... ......+. +.+.|.+|++.++.
T Consensus 73 ~~P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 73 DLPVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred HCCEEEEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 89988884322 22213334 88999999999865
No 192
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=4.2e-05 Score=44.58 Aligned_cols=54 Identities=20% Similarity=0.353 Sum_probs=39.5
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcH-----hHHHhc-CCCCCCEEEEeeCCe
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVK-----DVASKL-EVKAMPTFLLMREGA 101 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~-----~~~~~~-~v~~~P~~~~~~~g~ 101 (130)
++.|..++||+|++....|.+. ++.+..++++... +..++. |.+.+|++++ +|+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~-----g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~ 62 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK-----GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGK 62 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc-----CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCE
Confidence 5679999999999999888843 5677777766554 333444 7899999766 555
No 193
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.06 E-value=5.1e-05 Score=45.84 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=36.7
Q ss_pred CCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHH----hcCCCCCCEEEEeeCCeEEe
Q 032978 47 IWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVAS----KLEVKAMPTFLLMREGAVVD 104 (130)
Q Consensus 47 ~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~----~~~v~~~P~~~~~~~g~~~~ 104 (130)
+|||+|+.....|.++ ++.+..+|++++++... ..+...+|++++ +|+.+.
T Consensus 25 ~~Cp~C~~ak~lL~~~-----~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi--~g~~iG 79 (97)
T TIGR00365 25 PQCGFSARAVQILKAC-----GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV--KGEFVG 79 (97)
T ss_pred CCCchHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE--CCEEEe
Confidence 8999999998888775 46677788877665433 346678999754 666554
No 194
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.00 E-value=0.00017 Score=43.07 Aligned_cols=92 Identities=26% Similarity=0.221 Sum_probs=65.3
Q ss_pred EEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC-CCeEEEEEeccCcHhHHHhcCCCCCCE
Q 032978 15 VKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY-PDVLFLSVDVDDVKDVASKLEVKAMPT 93 (130)
Q Consensus 15 ~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~~v~~~~vd~~~~~~~~~~~~v~~~P~ 93 (130)
.++++.++++..+. .+..+ ||-|+.+++. .....+.+++..+ .++.|+.+. +..+++.+++. .|+
T Consensus 2 ~~i~s~~~l~~~~~----~~~~~---vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~-~~~ 67 (97)
T cd02981 2 KELTSKEELEKFLD----KDDVV---VVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVK-PGS 67 (97)
T ss_pred eecCCHHHHHHHhc----cCCeE---EEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCC-CCc
Confidence 45667777777665 56777 8899998887 4677888888888 468886665 45677777775 488
Q ss_pred EEEeeCC-eEEeeEecC-CHHHHHHHHHH
Q 032978 94 FLLMREG-AVVDKLVGA-NPEEIRKRIDS 120 (130)
Q Consensus 94 ~~~~~~g-~~~~~~~g~-~~~~l~~~i~~ 120 (130)
+++|+.. .....+.|. +.+.|.+||..
T Consensus 68 i~l~~~~~~~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 68 VVLFKPFEEEPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred eEEeCCcccCCccCCCCCCHHHHHHHHHh
Confidence 8888553 333335555 67899999864
No 195
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.00016 Score=47.36 Aligned_cols=91 Identities=19% Similarity=0.247 Sum_probs=64.7
Q ss_pred HHhhcCCCceEeEEeEEE-cCCChhhhhhhHHHHHHHHhC--CCeEEEEEeccC---------------------cHhHH
Q 032978 28 SQANNQGCPVRNVVVHFT-AIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDD---------------------VKDVA 83 (130)
Q Consensus 28 ~~~~~~~~~~~~~vv~f~-~~~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~---------------------~~~~~ 83 (130)
..+.+.++++ |++|| ..++|.|-...-.++....++ .++.++-|..+. ...++
T Consensus 24 ~Lsd~~Gk~V---VLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~ 100 (157)
T COG1225 24 SLSDLRGKPV---VLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVA 100 (157)
T ss_pred ehHHhcCCcE---EEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHH
Confidence 3333488899 99999 577888988888888877776 368888887543 44788
Q ss_pred HhcCCCC------------CC-EEEEeeCCeEEeeEecC----CHHHHHHHHHHH
Q 032978 84 SKLEVKA------------MP-TFLLMREGAVVDKLVGA----NPEEIRKRIDSF 121 (130)
Q Consensus 84 ~~~~v~~------------~P-~~~~~~~g~~~~~~~g~----~~~~l~~~i~~~ 121 (130)
+.|++.. .+ ||++-++|++...+... ..+++.+.++++
T Consensus 101 ~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 101 EAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred HHhCcccccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 8898743 23 56666889988877544 346676666654
No 196
>PRK10638 glutaredoxin 3; Provisional
Probab=97.93 E-value=7.5e-05 Score=43.63 Aligned_cols=57 Identities=14% Similarity=0.232 Sum_probs=41.1
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhH----HHhcCCCCCCEEEEeeCCeEEe
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDV----ASKLEVKAMPTFLLMREGAVVD 104 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~----~~~~~v~~~P~~~~~~~g~~~~ 104 (130)
++.|..+||++|++....|++. ++.+..+|++..++. .+..+...+|++++ +|+.+.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~~ig 64 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQHIG 64 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 5678899999999999888864 456666777766533 34447788998744 676554
No 197
>PRK10824 glutaredoxin-4; Provisional
Probab=97.89 E-value=7.1e-05 Score=46.61 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=35.2
Q ss_pred CCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHh----cCCCCCCEEEEeeCCeEEe
Q 032978 47 IWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASK----LEVKAMPTFLLMREGAVVD 104 (130)
Q Consensus 47 ~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~----~~v~~~P~~~~~~~g~~~~ 104 (130)
||||+|++....|..+. +.+..+|++..+++... -+-+.+|.+++ +|+.+.
T Consensus 28 p~Cpyc~~ak~lL~~~~-----i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI--~G~~IG 82 (115)
T PRK10824 28 PSCGFSAQAVQALSACG-----ERFAYVDILQNPDIRAELPKYANWPTFPQLWV--DGELVG 82 (115)
T ss_pred CCCchHHHHHHHHHHcC-----CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE--CCEEEc
Confidence 59999999999888763 44445666665544333 36678898655 777765
No 198
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.85 E-value=0.0001 Score=43.37 Aligned_cols=58 Identities=24% Similarity=0.254 Sum_probs=42.6
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhC-CCeEEEEEec--cCc------------------------------HhHHHhcC
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAY-PDVLFLSVDV--DDV------------------------------KDVASKLE 87 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~-~~v~~~~vd~--~~~------------------------------~~~~~~~~ 87 (130)
+..|+++.||+|..+.+.++++.... .++.+..... ... ...+.++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 35799999999999999999997555 4566655543 211 23566789
Q ss_pred CCCCCEEEEee
Q 032978 88 VKAMPTFLLMR 98 (130)
Q Consensus 88 v~~~P~~~~~~ 98 (130)
+.++|++++..
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999988754
No 199
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.84 E-value=0.00014 Score=50.47 Aligned_cols=111 Identities=24% Similarity=0.397 Sum_probs=76.8
Q ss_pred hhhhhhcCCCeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCC-eEEEEEeccCcH--
Q 032978 4 AAQEQQNKSRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPD-VLFLSVDVDDVK-- 80 (130)
Q Consensus 4 ~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~-v~~~~vd~~~~~-- 80 (130)
..+...+++++..+ +......+++-. ..++|. ||.|.+-.||+=..-.+.+++++++|++ +.|+.|-+.+..
T Consensus 74 ~~G~~APns~vv~l-~g~~~~~ildf~-~g~RPL---VlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHps 148 (237)
T PF00837_consen 74 KLGGPAPNSPVVTL-DGQRSCRILDFA-KGNRPL---VLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPS 148 (237)
T ss_pred eCCCCCCCCceEee-CCCcceeHHHhc-cCCCCe---EEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcC
Confidence 34566788899999 555544444432 268999 9999999999999999999999999965 556666543210
Q ss_pred --------------------------h------------------HHHhcCCCCCCE-EEEeeCCeEEeeEe-cC---CH
Q 032978 81 --------------------------D------------------VASKLEVKAMPT-FLLMREGAVVDKLV-GA---NP 111 (130)
Q Consensus 81 --------------------------~------------------~~~~~~v~~~P~-~~~~~~g~~~~~~~-g~---~~ 111 (130)
. ....| ...|. +.++++|+.+.... |+ ++
T Consensus 149 DgW~~~~~~~~i~qh~sledR~~aA~~l~~~~~~~pi~vD~mdN~~~~~Y--gA~PeRlyIi~~gkv~Y~Gg~GP~~y~~ 226 (237)
T PF00837_consen 149 DGWAFGNNPYEIPQHRSLEDRLRAAKLLKEEFPQCPIVVDTMDNNFNKAY--GALPERLYIIQDGKVVYKGGPGPFGYSP 226 (237)
T ss_pred CCccCCCCceeecCCCCHHHHHHHHHHHHhhCCCCCEEEEccCCHHHHHh--CCCcceEEEEECCEEEEeCCCCCCcCCH
Confidence 1 11111 24674 55568888775433 33 78
Q ss_pred HHHHHHHHHH
Q 032978 112 EEIRKRIDSF 121 (130)
Q Consensus 112 ~~l~~~i~~~ 121 (130)
+++++|++++
T Consensus 227 ~e~r~~L~~~ 236 (237)
T PF00837_consen 227 EELREWLEKY 236 (237)
T ss_pred HHHHHHHHhc
Confidence 9999999875
No 200
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.80 E-value=0.00019 Score=42.62 Aligned_cols=50 Identities=20% Similarity=0.298 Sum_probs=35.5
Q ss_pred CCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHH----HhcCCCCCCEEEEeeCCeEE
Q 032978 47 IWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVA----SKLEVKAMPTFLLMREGAVV 103 (130)
Q Consensus 47 ~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~----~~~~v~~~P~~~~~~~g~~~ 103 (130)
+||++|+.....|++. ++.+-.+|+..++++. +..+...+|++++ +|+.+
T Consensus 21 ~~Cp~C~~ak~~L~~~-----~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi--~g~~i 74 (90)
T cd03028 21 PRCGFSRKVVQILNQL-----GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV--NGELV 74 (90)
T ss_pred CCCcHHHHHHHHHHHc-----CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE--CCEEE
Confidence 6999999998888776 4666677776665543 3347778999644 67654
No 201
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.79 E-value=0.00039 Score=43.03 Aligned_cols=74 Identities=11% Similarity=0.134 Sum_probs=56.0
Q ss_pred CChhhhhhhHHHHHHHHhCC--CeEEEEEeccCcHhHHHhcCCCC----CCEEEEee-CCeEEeeEecC-CHHHHHHHHH
Q 032978 48 WCMPSVAMNPLFEELASAYP--DVLFLSVDVDDVKDVASKLEVKA----MPTFLLMR-EGAVVDKLVGA-NPEEIRKRID 119 (130)
Q Consensus 48 ~C~~C~~~~~~l~~l~~~~~--~v~~~~vd~~~~~~~~~~~~v~~----~P~~~~~~-~g~~~~~~~g~-~~~~l~~~i~ 119 (130)
.-..-......+.++++++. ++.|+.+|.++.....+.||+.. .|.+.+.. +++........ +.+.|.+|++
T Consensus 29 ~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~ 108 (111)
T cd03073 29 NPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKGKKYVMEEEFSDVDALEEFLE 108 (111)
T ss_pred ChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCCCccCCCcccCCHHHHHHHHH
Confidence 33455778899999999996 59999999998887889999984 89988885 33222211233 6789999988
Q ss_pred HH
Q 032978 120 SF 121 (130)
Q Consensus 120 ~~ 121 (130)
.+
T Consensus 109 ~f 110 (111)
T cd03073 109 DF 110 (111)
T ss_pred Hh
Confidence 75
No 202
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.00032 Score=42.88 Aligned_cols=58 Identities=16% Similarity=0.315 Sum_probs=39.8
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhC-CCeEEEEEeccCcH-hHHHh----cCCCCCCEEEEeeCCeEEe
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAY-PDVLFLSVDVDDVK-DVASK----LEVKAMPTFLLMREGAVVD 104 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~-~~v~~~~vd~~~~~-~~~~~----~~v~~~P~~~~~~~g~~~~ 104 (130)
+|.|..+||++|+.+...|.. + ....++.+|-..+. ++-+. -+.+.+|.+++ +|+.+.
T Consensus 16 VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~iG 79 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKFIG 79 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEEEc
Confidence 367999999999997777777 3 34667777766543 33322 24568898666 787774
No 203
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.51 E-value=0.00043 Score=52.14 Aligned_cols=57 Identities=16% Similarity=0.279 Sum_probs=41.5
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHh---HHHh---------cCCCCCCEEEEeeCCeEEe
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKD---VASK---------LEVKAMPTFLLMREGAVVD 104 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~---~~~~---------~~v~~~P~~~~~~~g~~~~ 104 (130)
|+.|+.+|||+|++....|++. ++.+-.+|+++.+. +..+ .|.+.+|++++ +|+.+.
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-----gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~ig 72 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-----DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHIG 72 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEEEe
Confidence 6789999999999888877764 67788888886663 2222 36778999766 565443
No 204
>PTZ00062 glutaredoxin; Provisional
Probab=97.45 E-value=0.0013 Score=44.96 Aligned_cols=51 Identities=14% Similarity=0.283 Sum_probs=35.9
Q ss_pred CCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHh----cCCCCCCEEEEeeCCeEEe
Q 032978 47 IWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASK----LEVKAMPTFLLMREGAVVD 104 (130)
Q Consensus 47 ~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~----~~v~~~P~~~~~~~g~~~~ 104 (130)
|+|+.|++....|++. ++.+..+|+++.+++... .+-..+|++++ +|+.+.
T Consensus 126 p~C~~C~~~k~~L~~~-----~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI--~G~~IG 180 (204)
T PTZ00062 126 PFCRFSNAVVNMLNSS-----GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV--NGELIG 180 (204)
T ss_pred CCChhHHHHHHHHHHc-----CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE--CCEEEc
Confidence 6899999988888754 567777888776655333 35567888655 676654
No 205
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0023 Score=44.60 Aligned_cols=39 Identities=15% Similarity=0.055 Sum_probs=28.2
Q ss_pred CCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEe
Q 032978 34 GCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVD 75 (130)
Q Consensus 34 ~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd 75 (130)
+..+ ++.|....||+|+...+.+++.....+++.+...+
T Consensus 84 ~~v~---v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~~~~~ 122 (244)
T COG1651 84 APVT---VVEFFDYTCPYCKEAFPELKKKYIDDGKVRLVLRE 122 (244)
T ss_pred CCce---EEEEecCcCccHHHHHHHHHHHhhhcCCCceEEEE
Confidence 3666 88899999999988888888866655554444443
No 206
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=97.31 E-value=0.0055 Score=40.89 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=27.9
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEE
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLS 73 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~ 73 (130)
|.+|+..-||.|....+.+.++.+.++++.+-.
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~ 34 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEW 34 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 788999999999999999999999885544443
No 207
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=97.17 E-value=0.0036 Score=41.82 Aligned_cols=32 Identities=19% Similarity=0.328 Sum_probs=24.9
Q ss_pred EEEcCCChhhhhhhHHHHHHHHhCC-CeEEEEE
Q 032978 43 HFTAIWCMPSVAMNPLFEELASAYP-DVLFLSV 74 (130)
Q Consensus 43 ~f~~~~C~~C~~~~~~l~~l~~~~~-~v~~~~v 74 (130)
+|+.|.|+.|..+.|.+.++...++ .+.|-.|
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i 34 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFI 34 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEE
Confidence 5999999999999999999999995 3655555
No 208
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.99 E-value=0.017 Score=35.02 Aligned_cols=97 Identities=13% Similarity=0.220 Sum_probs=65.0
Q ss_pred EEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC-CCeEEEEEeccC--cHhHHHhcCCC--
Q 032978 15 VKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY-PDVLFLSVDVDD--VKDVASKLEVK-- 89 (130)
Q Consensus 15 ~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~~v~~~~vd~~~--~~~~~~~~~v~-- 89 (130)
..|.+..+|.+++... .-| +|.|..+ -..-...+..+.+.+... +.-.+..|||.. ...+|+.+.+.
T Consensus 4 e~i~d~KdfKKLLRTr----~NV---LvLy~ks-~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~ 75 (112)
T cd03067 4 EDISDHKDFKKLLRTR----NNV---LVLYSKS-AKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPS 75 (112)
T ss_pred ccccchHHHHHHHhhc----CcE---EEEEecc-hhhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCC
Confidence 4566778999988753 344 5555544 444445556777777766 346677788876 77899999987
Q ss_pred --CCC-EEEEeeCCeEEeeEecC-CHHHHHHHHH
Q 032978 90 --AMP-TFLLMREGAVVDKLVGA-NPEEIRKRID 119 (130)
Q Consensus 90 --~~P-~~~~~~~g~~~~~~~g~-~~~~l~~~i~ 119 (130)
--| .+..|++|.....+... +...|..|++
T Consensus 76 ~kp~~~~LkHYKdG~fHkdYdR~~t~kSmv~Flr 109 (112)
T cd03067 76 SKPKPVELKHYKDGDFHTEYNRQLTFKSMVAFLR 109 (112)
T ss_pred CCCCcchhhcccCCCccccccchhhHHHHHHHhh
Confidence 445 46667999776655555 6677777764
No 209
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.86 E-value=0.033 Score=33.66 Aligned_cols=94 Identities=18% Similarity=0.169 Sum_probs=60.7
Q ss_pred eEEecChhhHHHHHH-HhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC-CCeEEEEEeccCcHhHHHhcCCCCC
Q 032978 14 VVKVDSVESWETFVS-QANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY-PDVLFLSVDVDDVKDVASKLEVKAM 91 (130)
Q Consensus 14 v~~i~~~~~~~~~~~-~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~~v~~~~vd~~~~~~~~~~~~v~~~ 91 (130)
+..|++.+++++++. . +..+ ||-|+..--. .....+.+++..+ .++.|+.. ....+...+++. .
T Consensus 2 v~~i~~~~~~e~~~~~~----~~~~---Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~---~~~~~~~~~~~~-~ 67 (102)
T cd03066 2 VEIINSERELQAFENIE----DDIK---LIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFAT---FDSKVAKKLGLK-M 67 (102)
T ss_pred ceEcCCHHHHHHHhccc----CCeE---EEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEE---CcHHHHHHcCCC-C
Confidence 467778888888886 4 2455 5556655333 3456777888777 56777433 333566777764 6
Q ss_pred CEEEEeeC-CeEEeeE-ecC-CHHHHHHHHHHH
Q 032978 92 PTFLLMRE-GAVVDKL-VGA-NPEEIRKRIDSF 121 (130)
Q Consensus 92 P~~~~~~~-g~~~~~~-~g~-~~~~l~~~i~~~ 121 (130)
|.++++++ ......+ .|. +.+.|.+||...
T Consensus 68 ~~i~l~~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 68 NEVDFYEPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CcEEEeCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 88888854 3222334 455 889999999864
No 210
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=96.82 E-value=0.01 Score=38.58 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=39.1
Q ss_pred EeEEEcC------CChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHH----HhcCC----CCCCEEEEeeCCeEEe
Q 032978 41 VVHFTAI------WCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVA----SKLEV----KAMPTFLLMREGAVVD 104 (130)
Q Consensus 41 vv~f~~~------~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~----~~~~v----~~~P~~~~~~~g~~~~ 104 (130)
|+.|+++ +|++|++....|+.+ +|.|-.+|++.++++. +.++. ..+|.+++ +|+.+.
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~-----~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~IG 72 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF-----RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGRYLG 72 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCEEEe
Confidence 3456666 899999988888765 5778888988765443 33344 57888655 565554
No 211
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=96.63 E-value=0.01 Score=33.79 Aligned_cols=57 Identities=14% Similarity=0.072 Sum_probs=48.8
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhC--CCeEEEEEeccCcHhHHHhcCCCCCCEEEEe
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDDVKDVASKLEVKAMPTFLLM 97 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~ 97 (130)
+..|-+...+.++.....+.++.+.+ ..+.+-.||+.++|++++.+++-.+||++-.
T Consensus 4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~ 62 (72)
T cd02978 4 LRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVKV 62 (72)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhhc
Confidence 45566666699999999999999887 3588899999999999999999999997654
No 212
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.61 E-value=0.028 Score=37.05 Aligned_cols=65 Identities=26% Similarity=0.300 Sum_probs=49.6
Q ss_pred hhhHHHHHHHHhCC-CeEEEEEeccCcHhHHHhcCCCCCCEEEEeeCC-eEEeeEec--CCHHHHHHHHHHHh
Q 032978 54 AMNPLFEELASAYP-DVLFLSVDVDDVKDVASKLEVKAMPTFLLMREG-AVVDKLVG--ANPEEIRKRIDSFV 122 (130)
Q Consensus 54 ~~~~~l~~l~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g-~~~~~~~g--~~~~~l~~~i~~~~ 122 (130)
.....+.++++.+. ++.|+.+. +.++++.+++.. |++++|+.+ +....+.| .+.+.|.+||....
T Consensus 7 ~~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~ 75 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNS 75 (184)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhc
Confidence 34567888888884 68888887 566889999988 999999773 33344555 48999999999873
No 213
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=96.53 E-value=0.073 Score=31.91 Aligned_cols=84 Identities=17% Similarity=0.194 Sum_probs=55.5
Q ss_pred hhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCCCCCCEEEEeeCC
Q 032978 21 ESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREG 100 (130)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g 100 (130)
+++...++.- ++... ++.|.... ..|..+...+++++..-+.+.+-..+... ..|++.+..+|
T Consensus 8 ~qL~~~f~~l--~~pV~---l~~f~~~~-~~~~e~~~ll~e~a~lSdkI~~~~~~~~~-----------~~P~~~i~~~~ 70 (94)
T cd02974 8 QQLKAYLERL--ENPVE---LVASLDDS-EKSAELLELLEEIASLSDKITLEEDNDDE-----------RKPSFSINRPG 70 (94)
T ss_pred HHHHHHHHhC--CCCEE---EEEEeCCC-cchHHHHHHHHHHHHhCCceEEEEecCCC-----------CCCEEEEecCC
Confidence 4556666542 55555 66666655 99999999999998876767665433321 47999988766
Q ss_pred eEE-eeEecC-CHHHHHHHHHHH
Q 032978 101 AVV-DKLVGA-NPEEIRKRIDSF 121 (130)
Q Consensus 101 ~~~-~~~~g~-~~~~l~~~i~~~ 121 (130)
+.. -++.|. .-.++..+|..+
T Consensus 71 ~~~gIrF~GiP~GhEf~Slilai 93 (94)
T cd02974 71 EDTGIRFAGIPMGHEFTSLVLAL 93 (94)
T ss_pred CcccEEEEecCCchhHHHHHHHh
Confidence 331 344455 667777777654
No 214
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=96.49 E-value=0.098 Score=32.88 Aligned_cols=100 Identities=16% Similarity=0.269 Sum_probs=66.7
Q ss_pred CCeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHH-HhC---CCeEEEEEecc-----CcHhH
Q 032978 12 SRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELA-SAY---PDVLFLSVDVD-----DVKDV 82 (130)
Q Consensus 12 ~~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~-~~~---~~v~~~~vd~~-----~~~~~ 82 (130)
.....+ +.-+|++.+. +.+.+ +|.|=... |+ -.-+..+.+++ +.. +++-++.|-+. +|.+|
T Consensus 4 ~G~v~L-D~~tFdKvi~----kf~~~---LVKFD~ay-Py-GeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~L 73 (126)
T PF07912_consen 4 KGCVPL-DELTFDKVIP----KFKYV---LVKFDVAY-PY-GEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMEL 73 (126)
T ss_dssp TTSEEE-STTHHHHHGG----GSSEE---EEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHH
T ss_pred Cceeec-cceehhheec----cCceE---EEEEeccC-CC-cchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHH
Confidence 345677 7788999998 45788 88886432 21 23346677777 332 57999999875 47799
Q ss_pred HHhcCC--CCCCEEEEeeCC-eEEeeE--ecC-CHHHHHHHHHHH
Q 032978 83 ASKLEV--KAMPTFLLMREG-AVVDKL--VGA-NPEEIRKRIDSF 121 (130)
Q Consensus 83 ~~~~~v--~~~P~~~~~~~g-~~~~~~--~g~-~~~~l~~~i~~~ 121 (130)
+++|++ ..+|.+.+|..| ...-.+ .|. +.+.|..|++..
T Consensus 74 aery~i~ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 74 AERYKIDKEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp HHHTT-SCCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHT
T ss_pred HHHhCCCcccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhC
Confidence 999999 468999998643 333333 343 889999999876
No 215
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.017 Score=45.83 Aligned_cols=79 Identities=16% Similarity=0.187 Sum_probs=56.7
Q ss_pred ChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHH---HHHHHhC-CCeEEEEEeccCcHhHHHhcC-------
Q 032978 19 SVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLF---EELASAY-PDVLFLSVDVDDVKDVASKLE------- 87 (130)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l---~~l~~~~-~~v~~~~vd~~~~~~~~~~~~------- 87 (130)
+.+.|.++-. .++|+ +|-+..+||--|+.|...= +++++-. .+.+-++||.++-|++.+-|.
T Consensus 32 ~~eAf~~A~~----edkPI---flSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~t 104 (667)
T COG1331 32 GEEAFAKAKE----EDKPI---LLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAIT 104 (667)
T ss_pred CHHHHHHHHH----hCCCE---EEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhc
Confidence 4445554444 78999 9999999999999887621 3344433 368888999999887766553
Q ss_pred -CCCCCEEEEe-eCCeEEe
Q 032978 88 -VKAMPTFLLM-REGAVVD 104 (130)
Q Consensus 88 -v~~~P~~~~~-~~g~~~~ 104 (130)
-.+.|-.+|. ++|+.+.
T Consensus 105 G~GGWPLtVfLTPd~kPFf 123 (667)
T COG1331 105 GQGGWPLTVFLTPDGKPFF 123 (667)
T ss_pred cCCCCceeEEECCCCceee
Confidence 6689954554 8888774
No 216
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=96.20 E-value=0.0021 Score=46.19 Aligned_cols=87 Identities=18% Similarity=0.319 Sum_probs=66.0
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEe-ccCcHhHHHhcCCCCCCEEEEeeCCeEEeeEecC-C
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVD-VDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGA-N 110 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd-~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~ 110 (130)
+..++ -+.||+.||+..+...+.+.-....++.+....++ ...-+.+...|++.+.|+..+... +.-.++-|. +
T Consensus 75 ~~~~v---s~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~-t~~~~~~~~r~ 150 (319)
T KOG2640|consen 75 KNDYV---SLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQ-TCPASYRGERD 150 (319)
T ss_pred cCCcc---cccchhcccCcccccCcccchhhhhccccccccHHHHhhcccchhccccccCCcceeecc-ccchhhccccc
Confidence 45677 78999999999999999999998888755554443 334567889999999999877754 444444455 7
Q ss_pred HHHHHHHHHHHhh
Q 032978 111 PEEIRKRIDSFVQ 123 (130)
Q Consensus 111 ~~~l~~~i~~~~~ 123 (130)
...|.++..+.+.
T Consensus 151 l~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 151 LASLVNFYTEITP 163 (319)
T ss_pred HHHHHHHHHhhcc
Confidence 8888888887764
No 217
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.14 E-value=0.14 Score=31.06 Aligned_cols=93 Identities=20% Similarity=0.180 Sum_probs=59.3
Q ss_pred eEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC-CCeEEEEEeccCcHhHHHhcCCCCCC
Q 032978 14 VVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY-PDVLFLSVDVDDVKDVASKLEVKAMP 92 (130)
Q Consensus 14 v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~~v~~~~vd~~~~~~~~~~~~v~~~P 92 (130)
+.++.+.+++++.+. .++.+ ||-|+..--. .....+.++++.+ .++.|+... ...+...+++ .|
T Consensus 2 ~~~i~s~~~l~~f~~----~~~~~---Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~--~~ 66 (104)
T cd03069 2 SVELRTEAEFEKFLS----DDDAS---VVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY--GE 66 (104)
T ss_pred ccccCCHHHHHHHhc----cCCcE---EEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC--CC
Confidence 345667788888776 34666 6777765443 3557777788777 567774433 3456778888 67
Q ss_pred EEEEeeCC-------eEEeeEecC-CHHHHHHHHHHH
Q 032978 93 TFLLMREG-------AVVDKLVGA-NPEEIRKRIDSF 121 (130)
Q Consensus 93 ~~~~~~~g-------~~~~~~~g~-~~~~l~~~i~~~ 121 (130)
++++|+.. .....+.|. +.+.|.+||...
T Consensus 67 ~ivl~~p~~~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 67 GVVLFRPPRLSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred ceEEEechhhhcccCcccccccCcCCHHHHHHHHHhh
Confidence 77777220 111224554 788999999764
No 218
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=96.03 E-value=0.028 Score=33.20 Aligned_cols=68 Identities=18% Similarity=0.126 Sum_probs=53.8
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhC--CCeEEEEEeccCcHhHHHhcCCCCCCEEEEeeCCeEEeeEecC
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGA 109 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~ 109 (130)
+=.|.+..-+.++.....+.++.+.+ +.+.+-.||+.++|++++.+++-.+||++-... ....+..|.
T Consensus 6 LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P-~P~rriiGd 75 (87)
T TIGR02654 6 LKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKILP-PPVRKIIGD 75 (87)
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcCC-CCcceeecc
Confidence 55677888899999999999998877 348888899999999999999999999776633 223334444
No 219
>PRK09301 circadian clock protein KaiB; Provisional
Probab=96.03 E-value=0.026 Score=34.29 Aligned_cols=78 Identities=17% Similarity=0.137 Sum_probs=59.7
Q ss_pred CCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC--CCeEEEEEeccCcHhHHHhcCCCCCCEEEEeeCCeEEeeEecC--
Q 032978 34 GCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGA-- 109 (130)
Q Consensus 34 ~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-- 109 (130)
...+ +=.|.+..-+.++.....+.++.+.+ +.+.+-.||+.++|++++.+++-.+||++-... ....+..|.
T Consensus 5 ~~~~---LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P-~P~rriiGDls 80 (103)
T PRK09301 5 KTYI---LKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKILP-PPVRKIIGDLS 80 (103)
T ss_pred ceEE---EEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcCC-CCcceeecccc
Confidence 3455 77788888999999999999998877 348888899999999999999999999776633 233444454
Q ss_pred CHHHHH
Q 032978 110 NPEEIR 115 (130)
Q Consensus 110 ~~~~l~ 115 (130)
+.+.+.
T Consensus 81 d~~kVL 86 (103)
T PRK09301 81 DREKVL 86 (103)
T ss_pred cHHHHH
Confidence 444443
No 220
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=96.03 E-value=0.056 Score=38.18 Aligned_cols=96 Identities=25% Similarity=0.296 Sum_probs=63.6
Q ss_pred HHHHhhcCCCceEeEEeEEEcCCCh-hhhhhhHHHHHHHHhC---CC----eEEEEEeccCc------------------
Q 032978 26 FVSQANNQGCPVRNVVVHFTAIWCM-PSVAMNPLFEELASAY---PD----VLFLSVDVDDV------------------ 79 (130)
Q Consensus 26 ~~~~~~~~~~~~~~~vv~f~~~~C~-~C~~~~~~l~~l~~~~---~~----v~~~~vd~~~~------------------ 79 (130)
.+.+.+..++.+ +++|.-+.|| .|-..+..+-...++. ++ -.|+.+|-...
T Consensus 131 ~~te~df~Gkw~---LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllG 207 (280)
T KOG2792|consen 131 RVTEKDFLGKWS---LIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLG 207 (280)
T ss_pred eecccccccceE---EEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhc
Confidence 344444588999 9999999998 4755555444443322 22 26777775321
Q ss_pred --------HhHHHhcCCCCC--C-----------EEEEe---eCCeEEeeEecC-CHHHHHHHHHHHhhh
Q 032978 80 --------KDVASKLEVKAM--P-----------TFLLM---REGAVVDKLVGA-NPEEIRKRIDSFVQS 124 (130)
Q Consensus 80 --------~~~~~~~~v~~~--P-----------~~~~~---~~g~~~~~~~g~-~~~~l~~~i~~~~~~ 124 (130)
..+++.|.|... | ++++| .+|+.++.+... +++++.+.|.+++.+
T Consensus 208 LTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~~ 277 (280)
T KOG2792|consen 208 LTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVAS 277 (280)
T ss_pred ccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHHh
Confidence 256788877532 3 45555 789999877666 889999988887654
No 221
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.024 Score=32.44 Aligned_cols=55 Identities=20% Similarity=0.318 Sum_probs=36.0
Q ss_pred EEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCc--------------HhH--HHhcCCCCCCEEEEeeCCeEE
Q 032978 43 HFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDV--------------KDV--ASKLEVKAMPTFLLMREGAVV 103 (130)
Q Consensus 43 ~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~--------------~~~--~~~~~v~~~P~~~~~~~g~~~ 103 (130)
.|++.-||.|..+...|+++- +.+-.|++... +++ ++..+--++|.++. .+|+.+
T Consensus 6 lfgsn~Cpdca~a~eyl~rl~-----v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~~vV 76 (85)
T COG4545 6 LFGSNLCPDCAPAVEYLERLN-----VDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDGKVV 76 (85)
T ss_pred eeccccCcchHHHHHHHHHcC-----CCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCCcEE
Confidence 699999999999888888773 34444554332 222 34556678999655 455554
No 222
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=95.91 E-value=0.028 Score=36.67 Aligned_cols=42 Identities=24% Similarity=0.238 Sum_probs=30.8
Q ss_pred CCCceEeEEeEEE-cCCChhhhhh-hHHHHHHHHhC--CCe-EEEEEecc
Q 032978 33 QGCPVRNVVVHFT-AIWCMPSVAM-NPLFEELASAY--PDV-LFLSVDVD 77 (130)
Q Consensus 33 ~~~~~~~~vv~f~-~~~C~~C~~~-~~~l~~l~~~~--~~v-~~~~vd~~ 77 (130)
.++++ ||+|| +.||+.|... .+.+.+...++ .++ .++.|..+
T Consensus 28 ~gk~v---vl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D 74 (155)
T cd03013 28 KGKKV---VIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVN 74 (155)
T ss_pred CCCcE---EEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECC
Confidence 45555 55555 8899999998 89898888877 356 47777654
No 223
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=95.89 E-value=0.2 Score=30.78 Aligned_cols=98 Identities=15% Similarity=0.155 Sum_probs=68.0
Q ss_pred hhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC---CCeEEEEEeccCcHhHH----HhcCCC-CC
Q 032978 20 VESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY---PDVLFLSVDVDDVKDVA----SKLEVK-AM 91 (130)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~---~~v~~~~vd~~~~~~~~----~~~~v~-~~ 91 (130)
..++-..-... -+... ++.|-.+..+.-..+++.++++|+++ +++.|+.||-+..|-+. +.|+|. .-
T Consensus 8 ~~~m~e~wedd--~~g~~---IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~ 82 (120)
T cd03074 8 PENMFETWEDD--LDGIH---IVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFR 82 (120)
T ss_pred HHHHHHhhhcc--cCCce---EEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCC
Confidence 33343444333 34566 78999999999999999999999988 67999999999988654 355654 45
Q ss_pred CEEEEee--CCeEE--ee---EecCCHHHHHHHHHHHh
Q 032978 92 PTFLLMR--EGAVV--DK---LVGANPEEIRKRIDSFV 122 (130)
Q Consensus 92 P~~~~~~--~g~~~--~~---~~g~~~~~l~~~i~~~~ 122 (130)
|.+-+.. +..-+ .. ..-.+.++|..||+..+
T Consensus 83 PqIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 83 PQIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred CceeeEecccccceeEecccccccCcHHHHHHHHHhhC
Confidence 8876662 22222 11 11237899999998753
No 224
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=95.86 E-value=0.15 Score=32.51 Aligned_cols=72 Identities=17% Similarity=0.244 Sum_probs=41.1
Q ss_pred hhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCCCCCCEEEEeeC
Q 032978 20 VESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMRE 99 (130)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~ 99 (130)
...+...+.++...+.++ |+. .-... .-+.....+.++..+-.. ..+.-+|.++++|+|+.+|++++.++
T Consensus 11 ~~~Lk~l~~~a~~~g~~~---VlR-G~~~~-~~~~T~~~i~~L~~~~~~-----~~v~IdP~lF~~f~I~~VPa~V~~~~ 80 (130)
T TIGR02742 11 EPLLKQLLDQAEALGAPL---VIR-GLLDN-GFKATATRIQSLIKDGGK-----SGVQIDPQWFKQFDITAVPAFVVVKD 80 (130)
T ss_pred HHHHHHHHHHHHHhCCeE---EEe-CCCCC-CHHHHHHHHHHHHhcCCC-----CcEEEChHHHhhcCceEcCEEEEECC
Confidence 356666666664334333 322 22222 223334444444333222 33445788999999999999999987
Q ss_pred Ce
Q 032978 100 GA 101 (130)
Q Consensus 100 g~ 101 (130)
+.
T Consensus 81 ~~ 82 (130)
T TIGR02742 81 GL 82 (130)
T ss_pred CC
Confidence 74
No 225
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=95.81 E-value=0.32 Score=33.39 Aligned_cols=95 Identities=21% Similarity=0.298 Sum_probs=61.5
Q ss_pred HHHhhcCCCceEeEEeEEEcCCCh-hhhhhhHHHHHHHHhC-----CCeEEEEEeccCc---------------------
Q 032978 27 VSQANNQGCPVRNVVVHFTAIWCM-PSVAMNPLFEELASAY-----PDVLFLSVDVDDV--------------------- 79 (130)
Q Consensus 27 ~~~~~~~~~~~~~~vv~f~~~~C~-~C~~~~~~l~~l~~~~-----~~v~~~~vd~~~~--------------------- 79 (130)
+.....++++. +|+|.=+.|| .|-.....+..+.++. .+++++.|.+|-.
T Consensus 60 ~~~~~l~Gk~~---lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~ 136 (207)
T COG1999 60 FTLKDLKGKPS---LVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIG 136 (207)
T ss_pred eeccccCCCEE---EEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeee
Confidence 33333488999 9999988886 6988888777776665 2354444443311
Q ss_pred --------HhHHHhcCCCC---------------CCEEEEe-eCCeEEeeEecC-CHHHHHHHHHHHhhh
Q 032978 80 --------KDVASKLEVKA---------------MPTFLLM-REGAVVDKLVGA-NPEEIRKRIDSFVQS 124 (130)
Q Consensus 80 --------~~~~~~~~v~~---------------~P~~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~~~ 124 (130)
.+++++|+|.. ...++++ .+|+....+.+. .++.+.+.+++++..
T Consensus 137 ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~~ 206 (207)
T COG1999 137 LTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLKE 206 (207)
T ss_pred eeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhhc
Confidence 14455555542 2233333 688888877766 778899888888653
No 226
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.76 E-value=0.26 Score=38.28 Aligned_cols=90 Identities=17% Similarity=0.190 Sum_probs=60.0
Q ss_pred hhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCCCCCCEEEEeeCC
Q 032978 21 ESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREG 100 (130)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g 100 (130)
+++...+..- + +++ -+.++.+.|+.|..+...++++++.-+++.+-..+.. ...|++.+..+|
T Consensus 8 ~~l~~~~~~~--~-~~v---~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~-----------~~~p~~~~~~~~ 70 (517)
T PRK15317 8 TQLKQYLELL--E-RPI---ELVASLDDSEKSAELKELLEEIASLSDKITVEEDSLD-----------VRKPSFSITRPG 70 (517)
T ss_pred HHHHHHHHhC--C-CCE---EEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEccCC-----------CCCCEEEEEcCC
Confidence 4566666542 3 444 4444455899999999999999987677776443321 247998888765
Q ss_pred eEE-eeEecC-CHHHHHHHHHHHhhhhcc
Q 032978 101 AVV-DKLVGA-NPEEIRKRIDSFVQSIRV 127 (130)
Q Consensus 101 ~~~-~~~~g~-~~~~l~~~i~~~~~~~~~ 127 (130)
+.. -++.|. .-.++..||..++.-+++
T Consensus 71 ~~~~i~f~g~P~g~Ef~s~i~~i~~~~~~ 99 (517)
T PRK15317 71 EDTGVRFAGIPMGHEFTSLVLALLQVGGH 99 (517)
T ss_pred ccceEEEEecCccHHHHHHHHHHHHhcCC
Confidence 432 345566 778899888888765443
No 227
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=95.71 E-value=0.26 Score=37.27 Aligned_cols=97 Identities=10% Similarity=0.152 Sum_probs=66.4
Q ss_pred hHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhh--HHHHHHHHhC--CCeEEEEEecc--CcHhHHHhcCCCCCCEEE
Q 032978 22 SWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMN--PLFEELASAY--PDVLFLSVDVD--DVKDVASKLEVKAMPTFL 95 (130)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~--~~l~~l~~~~--~~v~~~~vd~~--~~~~~~~~~~v~~~P~~~ 95 (130)
++-.+|..+. ..+.+ ||.|-+.......++. .......... ..++-+.|+.. ....+..=|.+..+|+++
T Consensus 7 nipeAIa~aK-~kkal---fVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~f 82 (506)
T KOG2507|consen 7 NIPEAIAEAK-GKKAL---FVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIF 82 (506)
T ss_pred chHHHHHHhh-cCCeE---EEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhccccccccee
Confidence 3455666664 45666 7777777777777766 2222222222 34666666654 345667778889999988
Q ss_pred Ee-eCCeEEeeEecC-CHHHHHHHHHHHh
Q 032978 96 LM-REGAVVDKLVGA-NPEEIRKRIDSFV 122 (130)
Q Consensus 96 ~~-~~g~~~~~~~g~-~~~~l~~~i~~~~ 122 (130)
|+ ..|..+....|. ..++|...|++..
T Consensus 83 fIg~sGtpLevitg~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 83 FIGFSGTPLEVITGFVTADELASSIEKVW 111 (506)
T ss_pred eecCCCceeEEeeccccHHHHHHHHHHHH
Confidence 88 789999999999 7888888887653
No 228
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=95.62 E-value=0.013 Score=35.61 Aligned_cols=33 Identities=15% Similarity=0.100 Sum_probs=25.1
Q ss_pred eEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCc
Q 032978 42 VHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDV 79 (130)
Q Consensus 42 v~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~ 79 (130)
..|+.++|+.|++....|++. ++.|-.+|+.+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~ 34 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH-----GIEYEFIDYLKE 34 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCCcEEEeeccC
Confidence 468999999999998777764 566666776553
No 229
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.58 E-value=0.36 Score=37.52 Aligned_cols=91 Identities=16% Similarity=0.210 Sum_probs=60.9
Q ss_pred hhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCCCCCCEEEEeeCC
Q 032978 21 ESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREG 100 (130)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g 100 (130)
+++...+..- ++... ++.|.. .|+.|..+...++++++.-+.+.+...+.+. ...|++.+..+|
T Consensus 8 ~~l~~~~~~~--~~~v~---~~~~~~-~~~~~~~~~~~~~~~~~~s~ki~~~~~~~~~----------~~~p~~~~~~~~ 71 (515)
T TIGR03140 8 AQLKSYLASL--ENPVT---LVLSAG-SHEKSKELLELLDEIASLSDKISLTQNTADT----------LRKPSFTILRDG 71 (515)
T ss_pred HHHHHHHHhc--CCCEE---EEEEeC-CCchhHHHHHHHHHHHHhCCCeEEEEecCCc----------CCCCeEEEecCC
Confidence 4566666542 44444 555555 7999999999999999876777775544322 356999888766
Q ss_pred eEE-eeEecC-CHHHHHHHHHHHhhhhcc
Q 032978 101 AVV-DKLVGA-NPEEIRKRIDSFVQSIRV 127 (130)
Q Consensus 101 ~~~-~~~~g~-~~~~l~~~i~~~~~~~~~ 127 (130)
+.. -++.|. .-.++..+|..++..+++
T Consensus 72 ~~~~i~f~g~P~g~Ef~s~i~~i~~~~~~ 100 (515)
T TIGR03140 72 ADTGIRFAGIPGGHEFTSLVLAILQVGGH 100 (515)
T ss_pred cccceEEEecCCcHHHHHHHHHHHHhcCC
Confidence 422 345566 778888888888765544
No 230
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=95.42 E-value=0.38 Score=32.99 Aligned_cols=79 Identities=25% Similarity=0.418 Sum_probs=53.8
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccC------------------cHhHHHhcCCCC--CCEEEEeeCC
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD------------------VKDVASKLEVKA--MPTFLLMREG 100 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~------------------~~~~~~~~~v~~--~P~~~~~~~g 100 (130)
|=.|++..|+.|-.....|.+|+.+ ++|..+...+|- ....++.++..+ +|.+++ ||
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~-~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV--nG 78 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAAR-PDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV--NG 78 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHH-TSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE--TT
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcC-CCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE--CC
Confidence 4468899999999999999999998 477777776542 123445555554 688776 77
Q ss_pred eEEeeEecCCHHHHHHHHHHHhhh
Q 032978 101 AVVDKLVGANPEEIRKRIDSFVQS 124 (130)
Q Consensus 101 ~~~~~~~g~~~~~l~~~i~~~~~~ 124 (130)
+.-. .|.+...+...|++....
T Consensus 79 ~~~~--~g~~~~~~~~ai~~~~~~ 100 (202)
T PF06764_consen 79 REHR--VGSDRAAVEAAIQAARAR 100 (202)
T ss_dssp TEEE--ETT-HHHHHHHHHHHHHT
T ss_pred eeee--eccCHHHHHHHHHHhhcc
Confidence 6553 478999999999998765
No 231
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.31 E-value=0.55 Score=32.71 Aligned_cols=43 Identities=16% Similarity=0.415 Sum_probs=32.5
Q ss_pred hHHHhcCCCCCCEEEEeeCCeEEeeEecC-CHHHHHHHHHHHhhhhcc
Q 032978 81 DVASKLEVKAMPTFLLMREGAVVDKLVGA-NPEEIRKRIDSFVQSIRV 127 (130)
Q Consensus 81 ~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~~~~ 127 (130)
..++++||+++|+|++ +|+. ...|. .++.+...|+++++...+
T Consensus 175 ~~A~e~gI~gVP~fv~--d~~~--~V~Gaq~~~v~~~al~~~~~~~~~ 218 (225)
T COG2761 175 AAAQEMGIRGVPTFVF--DGKY--AVSGAQPYDVLEDALRQLLAEKAE 218 (225)
T ss_pred HHHHHCCCccCceEEE--cCcE--eecCCCCHHHHHHHHHHHHhcccc
Confidence 4567899999999999 3332 23466 889999999999876553
No 232
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=95.29 E-value=0.34 Score=29.98 Aligned_cols=72 Identities=19% Similarity=0.228 Sum_probs=43.1
Q ss_pred ChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCCCCCCEEEEee
Q 032978 19 SVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMR 98 (130)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~ 98 (130)
....+...+.++...+ + .+.|=.---..=+.....+.++..+-+.. .++.-+|.++++|+|+.+|++++.+
T Consensus 9 P~~~L~~l~~~a~~~~--~---~~V~RG~~~g~~~~t~~~~~~l~~~~~~~----~~v~IdP~~F~~y~I~~VPa~V~~~ 79 (113)
T PF09673_consen 9 PDASLRNLLKQAERAG--V---VVVFRGFPDGSFKPTAKAIQELLRKDDPC----PGVQIDPRLFRQYNITAVPAFVVVK 79 (113)
T ss_pred CHHHHHHHHHHHHhCC--c---EEEEECCCCCCHHHHHHHHHHHhhccCCC----cceeEChhHHhhCCceEcCEEEEEc
Confidence 3466777777774332 2 33344332233334444444554443222 4445578899999999999999987
Q ss_pred C
Q 032978 99 E 99 (130)
Q Consensus 99 ~ 99 (130)
+
T Consensus 80 ~ 80 (113)
T PF09673_consen 80 D 80 (113)
T ss_pred C
Confidence 7
No 233
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.17 Score=37.83 Aligned_cols=80 Identities=20% Similarity=0.293 Sum_probs=60.9
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCCCCCCEEEEeeCCeEEeeEecC-CH
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGA-NP 111 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~ 111 (130)
.+..- +=-|++-.|..|-.....|..++--.|++....||..-..+-.+.-+|.++|++++ ||+.... |. +.
T Consensus 115 ~g~~~---FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa~Fq~Evear~IMaVPtvfl--nGe~fg~--GRmtl 187 (520)
T COG3634 115 DGDFH---FETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGALFQDEVEARNIMAVPTVFL--NGEEFGQ--GRMTL 187 (520)
T ss_pred CCcee---EEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecchhhHhHHHhccceecceEEE--cchhhcc--cceeH
Confidence 45555 77788899999998888888887767999999999887776677779999999655 7766543 44 55
Q ss_pred HHHHHHHH
Q 032978 112 EEIRKRID 119 (130)
Q Consensus 112 ~~l~~~i~ 119 (130)
+++...+.
T Consensus 188 eeilaki~ 195 (520)
T COG3634 188 EEILAKID 195 (520)
T ss_pred HHHHHHhc
Confidence 55555554
No 234
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=95.08 E-value=0.24 Score=27.91 Aligned_cols=73 Identities=10% Similarity=0.177 Sum_probs=42.4
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCCCCCCEEEEee--CCeEEeeEecCCHHHHHHHH
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMR--EGAVVDKLVGANPEEIRKRI 118 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~--~g~~~~~~~g~~~~~l~~~i 118 (130)
+..|+.+.|+.|++..-.|....-. ..+..+|.....++ +.-+...+|+++.-. +|..+. +...+.+++
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~---y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l~-----eS~~I~~yL 72 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIP---YEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQLV-----DSSVIISTL 72 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCc---eEEEECCchhHHHH-HHhCCCccCEEEECCCCCccEEE-----cHHHHHHHH
Confidence 4468889999999998777665322 22333333223333 233556899977542 232221 456677777
Q ss_pred HHHh
Q 032978 119 DSFV 122 (130)
Q Consensus 119 ~~~~ 122 (130)
++.+
T Consensus 73 ~~~~ 76 (77)
T cd03040 73 KTYL 76 (77)
T ss_pred HHHc
Confidence 7664
No 235
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.54 Score=30.80 Aligned_cols=88 Identities=23% Similarity=0.337 Sum_probs=60.3
Q ss_pred cCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC--CCeEEEEEeccCc--------H---hHHH-hcCC---------
Q 032978 32 NQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDDV--------K---DVAS-KLEV--------- 88 (130)
Q Consensus 32 ~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~~--------~---~~~~-~~~v--------- 88 (130)
++++++ +|.=+|+-|+.-- ....|+.|.++| .++.++..-+... . .+|+ .|+|
T Consensus 23 ~~GkVl---LIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~YgVtFp~f~Ki~ 98 (162)
T COG0386 23 YKGKVL---LIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNYGVTFPMFSKID 98 (162)
T ss_pred hCCcEE---EEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhccCceeeeeeEEe
Confidence 489999 9999999998764 456677777777 4566666654321 0 1111 1222
Q ss_pred -----------------------CC----CCEEEEeeCCeEEeeEecC-CHHHHHHHHHHHhh
Q 032978 89 -----------------------KA----MPTFLLMREGAVVDKLVGA-NPEEIRKRIDSFVQ 123 (130)
Q Consensus 89 -----------------------~~----~P~~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~ 123 (130)
.. +=-|++-++|+.+.++... .++++...|+++++
T Consensus 99 VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~ 161 (162)
T COG0386 99 VNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLLA 161 (162)
T ss_pred ecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHhc
Confidence 11 1146667899999999887 78999999998875
No 236
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=94.88 E-value=0.062 Score=33.36 Aligned_cols=34 Identities=9% Similarity=0.155 Sum_probs=26.7
Q ss_pred eEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcH
Q 032978 42 VHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVK 80 (130)
Q Consensus 42 v~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~ 80 (130)
..|+.++|+.|++....|++. ++.+-.+|+.+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN-----GIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCceEEEecCCCh
Confidence 368999999999998887773 6777778877654
No 237
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=94.87 E-value=0.21 Score=31.70 Aligned_cols=107 Identities=18% Similarity=0.270 Sum_probs=55.1
Q ss_pred hhhcCCCeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhh-hhhhHHHHH-HHHhC-CCeEEEEE----eccCc
Q 032978 7 EQQNKSRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPS-VAMNPLFEE-LASAY-PDVLFLSV----DVDDV 79 (130)
Q Consensus 7 ~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C-~~~~~~l~~-l~~~~-~~v~~~~v----d~~~~ 79 (130)
++.-...+.++++.++.+..+.. ....+ +|.+ .+=|+=- -..+|.... +.... |+ +++.| |.+..
T Consensus 11 ~ELt~~Gf~eL~T~e~Vd~~~~~---~~GTt---lVvV-NSVCGCAag~ARPa~~~al~~~kkPD-~lvTVFAGqDkEAt 82 (136)
T PF06491_consen 11 EELTRAGFEELTTAEEVDEALKN---KEGTT---LVVV-NSVCGCAAGNARPAAAMALQNDKKPD-HLVTVFAGQDKEAT 82 (136)
T ss_dssp HHHHTTT-EE--SHHHHHHHHHH-----SEE---EEEE-E-SSHHHHHTHHHHHHHHHHHSS--S-EEEEEETTTSHHHH
T ss_pred HHHHHcCccccCCHHHHHHHHhC---CCCcE---EEEE-eccccccccccCHHHHHHHhCCCCCC-ceEEeccCCCHHHH
Confidence 34556789999999999999985 34455 4433 4445411 233443333 33222 43 33333 33333
Q ss_pred HhHHHhcC---CCCCCEEEEeeCCeEEeeEe-----cCCHHHHHHHHHHHh
Q 032978 80 KDVASKLE---VKAMPTFLLMREGAVVDKLV-----GANPEEIRKRIDSFV 122 (130)
Q Consensus 80 ~~~~~~~~---v~~~P~~~~~~~g~~~~~~~-----g~~~~~l~~~i~~~~ 122 (130)
. -++.|= -.+.|++.++++|+.++... |.+++.|.+-|....
T Consensus 83 ~-~aR~yf~~~pPSSPS~ALfKdGelvh~ieRh~IEGr~a~~Ia~~L~~af 132 (136)
T PF06491_consen 83 A-KAREYFEPYPPSSPSIALFKDGELVHFIERHHIEGRPAEEIAENLQDAF 132 (136)
T ss_dssp H-HHHHTSTTS---SSEEEEEETTEEEEEE-GGGTTTS-HHHHHHHHHHHH
T ss_pred H-HHHHhcCCCCCCCchheeeeCCEEEEEeehhhcCCCCHHHHHHHHHHHH
Confidence 2 234442 24788999999999886433 446777776666554
No 238
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=94.76 E-value=0.042 Score=33.85 Aligned_cols=34 Identities=12% Similarity=0.204 Sum_probs=25.9
Q ss_pred eEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcH
Q 032978 42 VHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVK 80 (130)
Q Consensus 42 v~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~ 80 (130)
..|+.++|+.|++....|++. ++.|-.+|+.+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~ 35 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH-----GVDYTAIDIVEEP 35 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCceEEecccCCc
Confidence 468999999999998887764 5667777766543
No 239
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=94.68 E-value=0.2 Score=34.96 Aligned_cols=82 Identities=27% Similarity=0.337 Sum_probs=59.1
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEecc------------------CcHhHHHhcCCCCCCEEEEeeCCeE
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVD------------------DVKDVASKLEVKAMPTFLLMREGAV 102 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~------------------~~~~~~~~~~v~~~P~~~~~~~g~~ 102 (130)
|=.|++..|..|-.....|.+++.+ +++.-+...++ ......+.|+-++++|--.+-+|+.
T Consensus 45 VELfTSQGCsSCPPAd~~l~k~a~~-~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavvnGr~ 123 (261)
T COG5429 45 VELFTSQGCSSCPPADANLAKLADD-PGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVVNGRV 123 (261)
T ss_pred EEEeecCCcCCCChHHHHHHHhccC-CCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchheeechh
Confidence 6678888999999999999999876 56555554432 1234566778887776666667766
Q ss_pred EeeEecCCHHHHHHHHHHHhhhh
Q 032978 103 VDKLVGANPEEIRKRIDSFVQSI 125 (130)
Q Consensus 103 ~~~~~g~~~~~l~~~i~~~~~~~ 125 (130)
... |.++.++...|+....+.
T Consensus 124 ~~~--Gad~~~i~~~i~a~~~~g 144 (261)
T COG5429 124 HAN--GADPGAIEDAIAAMARRG 144 (261)
T ss_pred hhc--CCCHHHHHHHHHHhhccc
Confidence 554 789999999998875443
No 240
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=94.58 E-value=0.07 Score=33.92 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=24.3
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccC
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD 78 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~ 78 (130)
+..|+.++|+.|++....|++. ++.|-.+|+.+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-----gi~~~~idi~~ 34 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-----DIPFTERNIFS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCcEEeeccC
Confidence 4578999999999988777654 55566666544
No 241
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=94.38 E-value=0.053 Score=33.12 Aligned_cols=34 Identities=12% Similarity=0.041 Sum_probs=25.6
Q ss_pred eEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcH
Q 032978 42 VHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVK 80 (130)
Q Consensus 42 v~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~ 80 (130)
..|+.++|+.|++....|++- ++.|-.+|+.+.+
T Consensus 2 ~iy~~~~C~~crka~~~L~~~-----~i~~~~~di~~~p 35 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR-----GVAYTFHDYRKDG 35 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCCeEEEecccCC
Confidence 468999999999988877765 5666667766543
No 242
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=94.16 E-value=0.75 Score=28.07 Aligned_cols=71 Identities=10% Similarity=0.155 Sum_probs=46.0
Q ss_pred eEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC-CCeEEEEEeccCcHhHHHhcCCCCCC
Q 032978 14 VVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY-PDVLFLSVDVDDVKDVASKLEVKAMP 92 (130)
Q Consensus 14 v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~~v~~~~vd~~~~~~~~~~~~v~~~P 92 (130)
+..|.+.++++..+.. .+..+ ||-|+..--+ .....+.+++..+ .++.|+...- ..+.+.+++.. |
T Consensus 2 v~~i~s~~ele~f~~~---~~~~~---VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~~---~~~~~~~~~~~-~ 68 (107)
T cd03068 2 SKQLQTLKQVQEFLRD---GDDVI---IIGVFSGEED---PAYQLYQDAANSLREDYKFHHTFD---SEIFKSLKVSP-G 68 (107)
T ss_pred ceEcCCHHHHHHHHhc---CCCEE---EEEEECCCCC---HHHHHHHHHHHhcccCCEEEEECh---HHHHHhcCCCC-C
Confidence 5677788888888763 22556 6666665433 3556788888887 6687754433 36667787754 5
Q ss_pred EEEEe
Q 032978 93 TFLLM 97 (130)
Q Consensus 93 ~~~~~ 97 (130)
.+++|
T Consensus 69 ~vvl~ 73 (107)
T cd03068 69 QLVVF 73 (107)
T ss_pred ceEEE
Confidence 55555
No 243
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.59 Score=31.76 Aligned_cols=86 Identities=26% Similarity=0.317 Sum_probs=57.5
Q ss_pred CCCceEeEEeEEE-cCCChhhhhhhHHHHHHHHhC--CCeEEEEEeccC----------------------------cHh
Q 032978 33 QGCPVRNVVVHFT-AIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDD----------------------------VKD 81 (130)
Q Consensus 33 ~~~~~~~~vv~f~-~~~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~----------------------------~~~ 81 (130)
.++.+ |++|| +..-+.|-.....+.+...++ .++.++.+.+|. ..+
T Consensus 32 ~gkw~---VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~ 108 (194)
T COG0450 32 YGKWV---VLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGE 108 (194)
T ss_pred cCcEE---EEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchh
Confidence 44777 77777 455677777777777776666 467887777543 347
Q ss_pred HHHhcCCCCCC-------EEEEeeCCeEEeeEe-----cCCHHHHHHHHHHH
Q 032978 82 VASKLEVKAMP-------TFLLMREGAVVDKLV-----GANPEEIRKRIDSF 121 (130)
Q Consensus 82 ~~~~~~v~~~P-------~~~~~~~g~~~~~~~-----g~~~~~l~~~i~~~ 121 (130)
+++.|++..-. +|++.++|....... |.+.+++...++.+
T Consensus 109 vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAl 160 (194)
T COG0450 109 IARAYGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDAL 160 (194)
T ss_pred HHHHcCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHH
Confidence 88899886432 455557776554332 45788888887766
No 244
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=93.83 E-value=0.021 Score=33.36 Aligned_cols=53 Identities=19% Similarity=0.177 Sum_probs=45.1
Q ss_pred EEcCCChhhhhhhHHHHHHHHhC--CCeEEEEEeccCcHhHHHhcCCCCCCEEEE
Q 032978 44 FTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDDVKDVASKLEVKAMPTFLL 96 (130)
Q Consensus 44 f~~~~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~ 96 (130)
|-+..-+.+..+...++.+.+.+ ..+.+-.||+.++|++++.+++-.+||++-
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLik 57 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLIK 57 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHHT
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEee
Confidence 55666778889999999998876 359999999999999999999999998653
No 245
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=93.70 E-value=0.21 Score=27.75 Aligned_cols=56 Identities=13% Similarity=0.195 Sum_probs=36.0
Q ss_pred EEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccC-cHhHHHhcCCCCCCEEEEeeCCeE
Q 032978 43 HFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD-VKDVASKLEVKAMPTFLLMREGAV 102 (130)
Q Consensus 43 ~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~-~~~~~~~~~v~~~P~~~~~~~g~~ 102 (130)
.|+.++|+.|++..-.+++..-. +.+..+|... .+++.+-.....+|++.. .+|..
T Consensus 3 ly~~~~~p~~~rv~~~L~~~gl~---~e~~~v~~~~~~~~~~~~np~~~vP~L~~-~~g~~ 59 (71)
T cd03060 3 LYSFRRCPYAMRARMALLLAGIT---VELREVELKNKPAEMLAASPKGTVPVLVL-GNGTV 59 (71)
T ss_pred EEecCCCcHHHHHHHHHHHcCCC---cEEEEeCCCCCCHHHHHHCCCCCCCEEEE-CCCcE
Confidence 57889999999887777765433 4555566543 345545456678999754 33544
No 246
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=93.55 E-value=0.74 Score=26.01 Aligned_cols=70 Identities=10% Similarity=-0.019 Sum_probs=40.0
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCc----HhHHHhcCCCCCCEEEEeeCCeEEeeEecCCHHHHHH
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDV----KDVASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRK 116 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~----~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~ 116 (130)
+..++.++|+.|++..-.|++.. +.+-.++++.. +++.+.-+...+|+++.-.+|.. -.....|.+
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~g-----i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~-----l~es~~I~~ 71 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELE-----LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQ-----MFESADIVK 71 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcC-----CcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeE-----EEcHHHHHH
Confidence 34677889999998877777663 33333444332 23433335568898754323322 224456666
Q ss_pred HHHH
Q 032978 117 RIDS 120 (130)
Q Consensus 117 ~i~~ 120 (130)
++++
T Consensus 72 yL~~ 75 (77)
T cd03041 72 YLFK 75 (77)
T ss_pred HHHH
Confidence 6654
No 247
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=93.52 E-value=0.17 Score=31.28 Aligned_cols=34 Identities=15% Similarity=0.194 Sum_probs=25.5
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCc
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDV 79 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~ 79 (130)
+..|+.++|+.|++....|++. ++.+-.+|+.+.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-----gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-----QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCceEEEecCCC
Confidence 4568899999999988887764 566666776554
No 248
>PRK12559 transcriptional regulator Spx; Provisional
Probab=93.52 E-value=0.13 Score=32.71 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=23.8
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccC
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD 78 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~ 78 (130)
+..|+.++|+.|++....|++. ++.+-.+|+.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----gi~~~~~di~~ 34 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-----QIDYTEKNIVS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCeEEEEeeC
Confidence 5679999999999988777654 45555555543
No 249
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=93.48 E-value=1.7 Score=30.47 Aligned_cols=46 Identities=17% Similarity=0.285 Sum_probs=38.0
Q ss_pred HHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC-----CCeEEEEEecc
Q 032978 27 VSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY-----PDVLFLSVDVD 77 (130)
Q Consensus 27 ~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-----~~v~~~~vd~~ 77 (130)
+.++ .|.++ ||.+-..+|..|..-...|+.|..++ ++|.|+.||--
T Consensus 21 m~~~--~G~Vt---vVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 21 MLNS--LGHVT---VVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred hhhc--CCcEE---eeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 4444 78888 99999999999999888888887554 68999999853
No 250
>PHA03075 glutaredoxin-like protein; Provisional
Probab=92.90 E-value=0.17 Score=31.46 Aligned_cols=27 Identities=19% Similarity=0.407 Sum_probs=25.0
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCC
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYP 67 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~ 67 (130)
+|.|..|-|+.|......++++..+|.
T Consensus 5 LILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 5 LILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred EEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 899999999999999999999988873
No 251
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=92.90 E-value=0.27 Score=26.31 Aligned_cols=51 Identities=12% Similarity=0.064 Sum_probs=32.8
Q ss_pred EEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcH--hHHHhcCCCCCCEEEE
Q 032978 43 HFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVK--DVASKLEVKAMPTFLL 96 (130)
Q Consensus 43 ~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~--~~~~~~~v~~~P~~~~ 96 (130)
.|+.++|+.|.+..-.++...-. +....++..... ++.+..+...+|++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGLP---YELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC---cEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 57889999999888777766332 344445443322 2445566778998665
No 252
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=92.54 E-value=0.47 Score=26.13 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=33.6
Q ss_pred EEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEecc----CcHhHHHhcCCCCCCEEEE
Q 032978 43 HFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVD----DVKDVASKLEVKAMPTFLL 96 (130)
Q Consensus 43 ~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~----~~~~~~~~~~v~~~P~~~~ 96 (130)
.|+.++|+.|++..-.+....-. .....++.. ..+++.+......+|++..
T Consensus 3 Ly~~~~s~~~~~~~~~L~~~~l~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAEKGID---VPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEeCCCCcchHHHHHHHHHcCCC---ceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 57888999999998888776433 333445542 2344555556678999765
No 253
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=92.46 E-value=0.8 Score=32.41 Aligned_cols=56 Identities=16% Similarity=0.090 Sum_probs=37.4
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCCCCCCEEEEe
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLM 97 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~ 97 (130)
.+|+. |++..+.|||.|....=.|-.....|+++.+. -+.+.. .-.-..+|+++|.
T Consensus 57 ~Gk~~---v~~igw~gCP~~A~~sW~L~~ALsrfGn~~l~-~~~S~~-----~d~~pn~Ptl~F~ 112 (249)
T PF06053_consen 57 NGKPE---VIFIGWEGCPYCAAESWALYIALSRFGNFSLE-YHYSDP-----YDNYPNTPTLIFN 112 (249)
T ss_pred CCeeE---EEEEecccCccchhhHHHHHHHHHhcCCeeeE-EeecCc-----ccCCCCCCeEEEe
Confidence 78999 99999999999987766666655667777332 222222 1123467887765
No 254
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=92.37 E-value=1.3 Score=27.96 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=39.3
Q ss_pred hHHHHHHHHhCCCeEEEEEeccCcH----------hHHHhcCCCCCCEEEEeeCCeEEeeEecCCHHHHHHHHHHHhhh
Q 032978 56 NPLFEELASAYPDVLFLSVDVDDVK----------DVASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDSFVQS 124 (130)
Q Consensus 56 ~~~l~~l~~~~~~v~~~~vd~~~~~----------~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~~i~~~~~~ 124 (130)
...++.|.+ .++.+.+.|+..++ ++.++-|...+|-+++ +|+.+....-++.++|.+|+.--...
T Consensus 30 a~~~~~Lk~--~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dGeiv~~G~YPt~eEl~~~~~i~~~~ 104 (123)
T PF06953_consen 30 AADLDWLKE--QGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DGEIVKTGRYPTNEELAEWLGISFSE 104 (123)
T ss_dssp HHHHHHHHH--TT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TTEEEEESS---HHHHHHHHT--GGG
T ss_pred HHHHHHHHh--CCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CCEEEEecCCCCHHHHHHHhCCCccc
Confidence 334444433 48999999998766 2334458889998776 88888764444899999998765544
No 255
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=91.62 E-value=0.32 Score=30.94 Aligned_cols=33 Identities=6% Similarity=0.180 Sum_probs=23.9
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccC
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD 78 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~ 78 (130)
+..|+.++|+.|++....|++- ++.|-.+|+.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----~i~~~~~d~~~ 34 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH-----QLSYKEQNLGK 34 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc-----CCCeEEEECCC
Confidence 4568899999999987766653 56666666544
No 256
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=91.61 E-value=1 Score=29.93 Aligned_cols=43 Identities=26% Similarity=0.299 Sum_probs=32.0
Q ss_pred cCCCceEeEEeEEEcCCCh-hhhhhhHHHHHHHHhC----CCeEEEEEecc
Q 032978 32 NQGCPVRNVVVHFTAIWCM-PSVAMNPLFEELASAY----PDVLFLSVDVD 77 (130)
Q Consensus 32 ~~~~~~~~~vv~f~~~~C~-~C~~~~~~l~~l~~~~----~~v~~~~vd~~ 77 (130)
.+++++ +|.|.-+.|+ .|-.....+.++.+++ .++.++.|.+|
T Consensus 50 ~~Gk~~---lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD 97 (174)
T PF02630_consen 50 LKGKWV---LVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD 97 (174)
T ss_dssp GTTSEE---EEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred hCCCeE---EEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence 378999 9999999995 7887777777766554 35788777766
No 257
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=91.37 E-value=0.41 Score=26.45 Aligned_cols=51 Identities=20% Similarity=0.214 Sum_probs=31.9
Q ss_pred eEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccC-cHhHHHhcCCCCCCEEE
Q 032978 42 VHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD-VKDVASKLEVKAMPTFL 95 (130)
Q Consensus 42 v~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~-~~~~~~~~~v~~~P~~~ 95 (130)
..|+.++|+.|++..-.++...-. .....+|... .+++.+......+|++.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~vP~l~ 53 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS---VEIIDVDPDNPPEDLAELNPYGTVPTLV 53 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc---cEEEEcCCCCCCHHHHhhCCCCCCCEEE
Confidence 357889999999988777665433 3333344433 23444445567899764
No 258
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=91.06 E-value=0.76 Score=25.37 Aligned_cols=51 Identities=14% Similarity=0.059 Sum_probs=29.7
Q ss_pred EEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCCCCCCEEEE
Q 032978 43 HFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLL 96 (130)
Q Consensus 43 ~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~ 96 (130)
.++.++|++|++..-.|....-. +..+.++........+..+-..+|+++.
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl~---~~~~~~~~~~~~~~~~~~~~~~vP~L~~ 53 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNIP---VEQIILQNDDEATPIRMIGAKQVPILEK 53 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCCC---eEEEECCCCchHHHHHhcCCCccCEEEe
Confidence 46788999999887776665322 2333344433333333444567898643
No 259
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=91.06 E-value=0.9 Score=30.13 Aligned_cols=95 Identities=22% Similarity=0.377 Sum_probs=65.5
Q ss_pred HHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC--CCeEEEEEeccC--------cHh----HHHhcCC---
Q 032978 26 FVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDD--------VKD----VASKLEV--- 88 (130)
Q Consensus 26 ~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~--------~~~----~~~~~~v--- 88 (130)
.+....++++.+ +|.=-|+-|+.-......|..|.++| .++.++..-|.. +.+ +..+|+.
T Consensus 26 ~v~l~~yrGkV~---LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei~~f~~~r~~~~f~ 102 (171)
T KOG1651|consen 26 YVSLSQYRGKVV---LIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEILNFVKVRYGAEFP 102 (171)
T ss_pred CccHHHhCCeEE---EEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHHHHHHHhccCCCCc
Confidence 344444589999 99999999999988888999999998 467777776532 111 1122222
Q ss_pred ----------------------C------CC----CEEEEeeCCeEEeeEecC-CHHHHHHHHHHHhh
Q 032978 89 ----------------------K------AM----PTFLLMREGAVVDKLVGA-NPEEIRKRIDSFVQ 123 (130)
Q Consensus 89 ----------------------~------~~----P~~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~ 123 (130)
. .+ --|++-++|+.+.++... ++..++.-|++++.
T Consensus 103 if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~lL~ 170 (171)
T KOG1651|consen 103 IFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIEKLLA 170 (171)
T ss_pred cEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccchhHHHHhc
Confidence 0 11 146666899999998777 67777777777764
No 260
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=90.39 E-value=2.9 Score=25.98 Aligned_cols=81 Identities=16% Similarity=0.215 Sum_probs=50.4
Q ss_pred EeEEE-cCCChhhhhhhHHHHHHHHhC--CCeEEEEEecc-Cc-----------HhHHHhcCCCCCC--EEEEeeCCeEE
Q 032978 41 VVHFT-AIWCMPSVAMNPLFEELASAY--PDVLFLSVDVD-DV-----------KDVASKLEVKAMP--TFLLMREGAVV 103 (130)
Q Consensus 41 vv~f~-~~~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~-~~-----------~~~~~~~~v~~~P--~~~~~~~g~~~ 103 (130)
+|.|. +...+.=+.....|..-...+ .++.++.+--+ .. ..+.+.|++..-. .+++-++|...
T Consensus 13 lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG~vK 92 (118)
T PF13778_consen 13 LVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKDGGVK 92 (118)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCCCcEE
Confidence 44444 334555566666666643334 35766666322 22 2678888866333 34444889888
Q ss_pred eeEecC-CHHHHHHHHHHH
Q 032978 104 DKLVGA-NPEEIRKRIDSF 121 (130)
Q Consensus 104 ~~~~g~-~~~~l~~~i~~~ 121 (130)
.+.... +.++|...|+.+
T Consensus 93 ~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 93 LRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred EecCCCCCHHHHHHHHhCC
Confidence 887777 899999998865
No 261
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=90.35 E-value=3.3 Score=26.56 Aligned_cols=96 Identities=11% Similarity=0.156 Sum_probs=63.9
Q ss_pred hHHHHHHHh----hcCCCceEeEEeEEEcCCCh----hhhhhh--HHHHHHHHhCCCeEEEEEeccCcH-----------
Q 032978 22 SWETFVSQA----NNQGCPVRNVVVHFTAIWCM----PSVAMN--PLFEELASAYPDVLFLSVDVDDVK----------- 80 (130)
Q Consensus 22 ~~~~~~~~~----~~~~~~~~~~vv~f~~~~C~----~C~~~~--~~l~~l~~~~~~v~~~~vd~~~~~----------- 80 (130)
++.+++.++ ....|+. +|+.+++.-+ .|+..+ +.+-++-+ .++.+..-|++...
T Consensus 5 s~~~Al~~A~~~~~~e~K~L---~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~--~nfv~Wg~dvt~~~~~~~fl~~~~~ 79 (136)
T cd02990 5 SLEAAFQEACYRKARDRKLL---AIYLHHDESVLSNVFCSQLLCAESIVQYLS--QNFITWGWDMTKESNKARFLSSCTR 79 (136)
T ss_pred cHHHHHHHHhhhhhhhcceE---EEEEcCCCCccHHHHHHHHhcCHHHHHHHH--cCEEEEeeeccchhhhhHHHHhhhh
Confidence 466666666 5578999 9999998764 444432 23333333 36777778876532
Q ss_pred -------hHHHhcCCCCCCEEEEee-CC---eEEeeEecC-CHHHHHHHHHHHh
Q 032978 81 -------DVASKLEVKAMPTFLLMR-EG---AVVDKLVGA-NPEEIRKRIDSFV 122 (130)
Q Consensus 81 -------~~~~~~~v~~~P~~~~~~-~g---~~~~~~~g~-~~~~l~~~i~~~~ 122 (130)
...+.++...+|.+.++- .. ..+.+..|. +++++...+.+.+
T Consensus 80 ~~g~~a~~~~~~~~~~~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~v 133 (136)
T cd02990 80 HFGSVAAQTIRNIKTDQLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAM 133 (136)
T ss_pred hhhHHHHHHHHhcCcCCCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHH
Confidence 234567789999877772 22 567788888 8888888777654
No 262
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=90.30 E-value=1 Score=24.92 Aligned_cols=51 Identities=12% Similarity=0.031 Sum_probs=33.9
Q ss_pred EEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccC----cHhHHHhcCCCCCCEEEE
Q 032978 43 HFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD----VKDVASKLEVKAMPTFLL 96 (130)
Q Consensus 43 ~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~----~~~~~~~~~v~~~P~~~~ 96 (130)
.|+.+.|+.|++..-.++...-. +....+|..+ .+++.+......+|++..
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~gi~---~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03045 3 LYYLPGSPPCRAVLLTAKALGLE---LNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD 57 (74)
T ss_pred EEeCCCCCcHHHHHHHHHHcCCC---CEEEEecCccCCcCCHHHHhhCcCCCCCEEEE
Confidence 58889999999888777776433 4444555432 245555555678999853
No 263
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=90.28 E-value=2.8 Score=29.03 Aligned_cols=73 Identities=23% Similarity=0.332 Sum_probs=49.5
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCCCCCCEEEEeeCCeEEeeEecC-CHHHHHHHHH
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGA-NPEEIRKRID 119 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~i~ 119 (130)
+=.|....|..|-.+...|+.=. -.++|.| ++....+.++-+-+|-++|.+++ +|+.+.. ++ ++++++..++
T Consensus 13 VkI~~HktC~ssy~Lf~~L~nkg-ll~~Vki--i~a~~p~f~~~~~~V~SvP~Vf~--DGel~~~--dpVdp~~ies~~~ 85 (265)
T COG5494 13 VKIFTHKTCVSSYMLFEYLENKG-LLGKVKI--IDAELPPFLAFEKGVISVPSVFI--DGELVYA--DPVDPEEIESILS 85 (265)
T ss_pred EEEEEecchHHHHHHHHHHHhcC-CCCCceE--EEcCCChHHHhhcceeecceEEE--cCeEEEc--CCCCHHHHHHHHc
Confidence 44577788888877665554411 1267877 67777777776768889999655 7776653 44 7888777765
Q ss_pred H
Q 032978 120 S 120 (130)
Q Consensus 120 ~ 120 (130)
-
T Consensus 86 G 86 (265)
T COG5494 86 G 86 (265)
T ss_pred C
Confidence 4
No 264
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.98 E-value=0.87 Score=31.09 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=34.4
Q ss_pred hHHHhcCCCCCCEEEEeeCCeEEeeEecC---CHHHHHHHHHHHhh
Q 032978 81 DVASKLEVKAMPTFLLMREGAVVDKLVGA---NPEEIRKRIDSFVQ 123 (130)
Q Consensus 81 ~~~~~~~v~~~P~~~~~~~g~~~~~~~g~---~~~~l~~~i~~~~~ 123 (130)
.+++++++.++||+++-+||+...-..|. +++.+..++...+.
T Consensus 165 ~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~~ 210 (212)
T COG3531 165 RLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRLA 210 (212)
T ss_pred HHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHHh
Confidence 56789999999999999999988766663 67788877776653
No 265
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.60 E-value=3.2 Score=25.23 Aligned_cols=68 Identities=21% Similarity=0.109 Sum_probs=41.0
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCC-CCCCEE-EEeeCCeEEe
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEV-KAMPTF-LLMREGAVVD 104 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v-~~~P~~-~~~~~g~~~~ 104 (130)
.+..+ +.+-.+|.-|.|--......-|.. +.-+.|..+|+-.++++.+.+.- ..+||+ -+|-+|+.+.
T Consensus 14 ~n~Vv---LFMKGtp~~P~CGFS~~~vqiL~~-~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfvG 83 (105)
T COG0278 14 ENPVV---LFMKGTPEFPQCGFSAQAVQILSA-CGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFVG 83 (105)
T ss_pred cCceE---EEecCCCCCCCCCccHHHHHHHHH-cCCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEec
Confidence 44555 555556665555444444444432 22289999999999999876543 356653 3556887665
No 266
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=89.42 E-value=4.2 Score=26.29 Aligned_cols=71 Identities=17% Similarity=0.193 Sum_probs=48.3
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCCCCC----CEEEEeeCCeEEeeEecCCHHHHHH
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAM----PTFLLMREGAVVDKLVGANPEEIRK 116 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~----P~~~~~~~g~~~~~~~g~~~~~l~~ 116 (130)
++.+++|.|+=|......++. .++.+-.+..++...+.++|+|..- =|.++ +|+.++.+. -.+.+..
T Consensus 28 ~~vyksPnCGCC~~w~~~mk~-----~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~Gy~vEGHV--Pa~aI~~ 98 (149)
T COG3019 28 MVVYKSPNCGCCDEWAQHMKA-----NGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NGYYVEGHV--PAEAIAR 98 (149)
T ss_pred EEEEeCCCCccHHHHHHHHHh-----CCcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cCEEEeccC--CHHHHHH
Confidence 678999999999888777762 2677777888888888888877421 24333 787777433 4455555
Q ss_pred HHHH
Q 032978 117 RIDS 120 (130)
Q Consensus 117 ~i~~ 120 (130)
++++
T Consensus 99 ll~~ 102 (149)
T COG3019 99 LLAE 102 (149)
T ss_pred HHhC
Confidence 5543
No 267
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=88.54 E-value=0.68 Score=28.66 Aligned_cols=33 Identities=12% Similarity=0.153 Sum_probs=24.0
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccC
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD 78 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~ 78 (130)
+..|+.+.|+.|++....|++- ++.|-.+|..+
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~-----gi~~~~~d~~~ 34 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA-----GHEVEVRDLLT 34 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEeehhc
Confidence 4568999999999888777654 45555566544
No 268
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=87.83 E-value=0.9 Score=30.16 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=24.3
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhC
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAY 66 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~ 66 (130)
|.+|+.+.||.|....+.++++.+.+
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~ 28 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEY 28 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHh
Confidence 66899999999999999999999988
No 269
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=87.72 E-value=9.8 Score=28.48 Aligned_cols=108 Identities=14% Similarity=0.155 Sum_probs=66.4
Q ss_pred CCCeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC---CCeEEEEEeccCcHhHH----
Q 032978 11 KSRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY---PDVLFLSVDVDDVKDVA---- 83 (130)
Q Consensus 11 ~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~---~~v~~~~vd~~~~~~~~---- 83 (130)
...+..+ +..++-...... -+..- +|.|-....|.-..++..|+++++.. |++.|+.||-+..|-+.
T Consensus 248 rptlrkl-~~~~m~e~Wedd--~~g~h---IvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE 321 (383)
T PF01216_consen 248 RPTLRKL-RPEDMFETWEDD--IDGIH---IVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWE 321 (383)
T ss_dssp S-SEEE---GGGHHHHHHSS--SSSEE---EEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHH
T ss_pred hhHhhhC-Chhhhhhhhccc--CCCce---EEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHH
Confidence 4456666 555554444443 35566 78899999999999999999999987 68999999999988553
Q ss_pred HhcCCC-CCCEEEEee--CCeEEeeEe-----cCCHHHHHHHHHHHhhh
Q 032978 84 SKLEVK-AMPTFLLMR--EGAVVDKLV-----GANPEEIRKRIDSFVQS 124 (130)
Q Consensus 84 ~~~~v~-~~P~~~~~~--~g~~~~~~~-----g~~~~~l~~~i~~~~~~ 124 (130)
+.|+|. .-|.+-+.. +..-+..-. -++.++|..||+..+..
T Consensus 322 ~tF~Idl~~PqIGvVnvtdadsvW~dm~d~~d~pt~~~LedWieDVlsg 370 (383)
T PF01216_consen 322 KTFGIDLSRPQIGVVNVTDADSVWMDMDDDDDLPTAEELEDWIEDVLSG 370 (383)
T ss_dssp HHHTT-TTS-EEEEEETTTSEEEEC-STTTSS---HHHHHHHHHHHHCT
T ss_pred hhcCccccCCceeEEeccccccchhccCCcccCCcHHHHHHHHHHHhcC
Confidence 456765 459877773 223332111 12689999999998743
No 270
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=87.58 E-value=2.5 Score=24.59 Aligned_cols=53 Identities=8% Similarity=0.134 Sum_probs=33.7
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCc-HhHHHhcCCCCCCEEEE
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDV-KDVASKLEVKAMPTFLL 96 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~-~~~~~~~~v~~~P~~~~ 96 (130)
+..|+.+.|+.|++..-.+....-. +.+..++.... ..+.+......+|++..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl~---~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNIP---HEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCC---CeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 3457788899999887776665332 44455555433 33445455678999764
No 271
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=87.37 E-value=3.5 Score=22.98 Aligned_cols=71 Identities=13% Similarity=0.125 Sum_probs=46.5
Q ss_pred EEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCc-HhHHHhcCCCCCCEEEEeeCCeEEeeEecCCHHHHHHHHHHH
Q 032978 43 HFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDV-KDVASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDSF 121 (130)
Q Consensus 43 ~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~-~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~~i~~~ 121 (130)
.++.++|+.|++..-.++...- .+.+..++.... ..+.+......+|++. .+|..+. +...|.+++++.
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i---~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l~-----dS~~I~~yL~~~ 70 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGI---PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVLT-----DSAAIIEYLEER 70 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTE---EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEEE-----SHHHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCC---eEEEeccCcccchhHHHhhcccccceEEE--ECCEEEe-----CHHHHHHHHHHH
Confidence 3678999999998877766532 255555555543 4555555677899987 4465333 556777777776
Q ss_pred hh
Q 032978 122 VQ 123 (130)
Q Consensus 122 ~~ 123 (130)
-+
T Consensus 71 ~~ 72 (75)
T PF13417_consen 71 YP 72 (75)
T ss_dssp ST
T ss_pred cC
Confidence 43
No 272
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=86.65 E-value=1.1 Score=29.95 Aligned_cols=35 Identities=26% Similarity=0.516 Sum_probs=24.9
Q ss_pred HhHHHhcCCCCCCEEEEeeCCeEEeeEecC-CHHHHHHHH
Q 032978 80 KDVASKLEVKAMPTFLLMREGAVVDKLVGA-NPEEIRKRI 118 (130)
Q Consensus 80 ~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~i 118 (130)
...+.++|+.++|++++ +|+.. ..|. +.+.+.+.|
T Consensus 165 ~~~a~~~gv~G~Pt~vv--~g~~~--~~G~~~~~~~~~~i 200 (201)
T cd03024 165 EARARQLGISGVPFFVF--NGKYA--VSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHCCCCcCCEEEE--CCeEe--ecCCCCHHHHHHHh
Confidence 35567889999999888 55533 4466 777777665
No 273
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=86.38 E-value=0.93 Score=27.98 Aligned_cols=34 Identities=15% Similarity=0.039 Sum_probs=25.5
Q ss_pred eEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcH
Q 032978 42 VHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVK 80 (130)
Q Consensus 42 v~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~ 80 (130)
..|+.+.|+.|++....|++. ++.+..+|+.+.+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~~p 35 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK-----GIEPEVVKYLKNP 35 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEeccCCC
Confidence 468899999999998888764 5666667765543
No 274
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=85.41 E-value=1.1 Score=27.51 Aligned_cols=33 Identities=18% Similarity=0.099 Sum_probs=24.1
Q ss_pred eEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCc
Q 032978 42 VHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDV 79 (130)
Q Consensus 42 v~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~ 79 (130)
..|+.+.|..|++....|++. ++.|-.+|+.+.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~~ 34 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA-----GIEPEIVEYLKT 34 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEecccC
Confidence 468899999999988776654 556666776544
No 275
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=84.90 E-value=2.5 Score=29.04 Aligned_cols=30 Identities=13% Similarity=0.289 Sum_probs=23.5
Q ss_pred cHhHHHhcCCCCCCEEEEeeCCeEEeeEecC
Q 032978 79 VKDVASKLEVKAMPTFLLMREGAVVDKLVGA 109 (130)
Q Consensus 79 ~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~ 109 (130)
+|.++++|+|+.+|++++... ...+...|.
T Consensus 151 DP~lF~~F~I~~VPafVv~C~-~~yD~I~GN 180 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFCS-QGYDIIRGN 180 (212)
T ss_pred CHHHHHhcCCccccEEEEEcC-CCCCEEEec
Confidence 678999999999999999743 444556666
No 276
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=84.35 E-value=1.9 Score=26.23 Aligned_cols=57 Identities=9% Similarity=0.102 Sum_probs=36.8
Q ss_pred EEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCCC--CCCEEEE-eeCCe
Q 032978 44 FTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVK--AMPTFLL-MREGA 101 (130)
Q Consensus 44 f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~--~~P~~~~-~~~g~ 101 (130)
||..+|+-|......+..... ...+.|+.+--....++...+++. ..-..+. ..+|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR-GGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC-CCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 899999999999988888832 245777655333444445566664 2344344 46776
No 277
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=84.06 E-value=1.4 Score=29.16 Aligned_cols=33 Identities=21% Similarity=0.434 Sum_probs=22.6
Q ss_pred hHHHhcCCCCCCEEEEeeCCeEEeeEecC-CHHHHHHHH
Q 032978 81 DVASKLEVKAMPTFLLMREGAVVDKLVGA-NPEEIRKRI 118 (130)
Q Consensus 81 ~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~i 118 (130)
..+.++|+.++|++++ +|+. +.|. ..+.+...+
T Consensus 158 ~~a~~~gi~gvPtfvv--~g~~---~~G~~~l~~~~~~l 191 (192)
T cd03022 158 EEAIARGVFGVPTFVV--DGEM---FWGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHcCCCcCCeEEE--CCee---ecccccHHHHHHHh
Confidence 5567889999999888 6753 3466 445555543
No 278
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=82.68 E-value=15 Score=26.06 Aligned_cols=72 Identities=14% Similarity=0.165 Sum_probs=39.7
Q ss_pred CCeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCC-----ChhhhhhhHHHHHHHHhCC-CeEEEEEeccCcHhHHHh
Q 032978 12 SRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIW-----CMPSVAMNPLFEELASAYP-DVLFLSVDVDDVKDVASK 85 (130)
Q Consensus 12 ~~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~-----C~~C~~~~~~l~~l~~~~~-~v~~~~vd~~~~~~~~~~ 85 (130)
++...+ ++.+. +.++.- . ++++ |-.|++.. -+.-......|++.+..-+ ++.+-.+|.+.+++..++
T Consensus 7 ~k~ysL-S~~T~-~~L~~L--~-~pV~--i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~ 79 (271)
T PF09822_consen 7 NKRYSL-SDQTK-KVLKSL--D-EPVT--ITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEE 79 (271)
T ss_pred CCCccC-CHHHH-HHHHhC--C-CCEE--EEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHH
Confidence 445555 44433 344442 3 4551 55555552 2333334444444444435 699999999887776665
Q ss_pred ----cCCCC
Q 032978 86 ----LEVKA 90 (130)
Q Consensus 86 ----~~v~~ 90 (130)
+|+..
T Consensus 80 ~~~~~Gi~~ 88 (271)
T PF09822_consen 80 KAKEYGIQP 88 (271)
T ss_pred HHHhcCCCc
Confidence 77766
No 279
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=79.80 E-value=9.1 Score=23.52 Aligned_cols=43 Identities=16% Similarity=0.187 Sum_probs=36.8
Q ss_pred cCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC--CCeEEEEEeccC
Q 032978 32 NQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDD 78 (130)
Q Consensus 32 ~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~ 78 (130)
++|+++ +|.=.|+-|+.-. ....|++|.++| .++.++..-+..
T Consensus 19 y~Gkv~---LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 19 YKGKVL---LIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp GTTSEE---EEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred cCCCEE---EEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 489999 9999999999988 888999999999 368888887654
No 280
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=79.12 E-value=3.6 Score=25.46 Aligned_cols=50 Identities=18% Similarity=0.298 Sum_probs=33.9
Q ss_pred ChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHh-HHHhcC--CCCCCEEEEee
Q 032978 49 CMPSVAMNPLFEELASAYPDVLFLSVDVDDVKD-VASKLE--VKAMPTFLLMR 98 (130)
Q Consensus 49 C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~-~~~~~~--v~~~P~~~~~~ 98 (130)
|++|..+...|...-.--..+.+.+|+...-.. +....| -++.|++++-.
T Consensus 24 Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~ 76 (112)
T PF11287_consen 24 CPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLAD 76 (112)
T ss_pred CCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCC
Confidence 999988777665543322468899999887553 333333 56899988864
No 281
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=78.48 E-value=3 Score=25.98 Aligned_cols=24 Identities=13% Similarity=0.116 Sum_probs=19.9
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHH
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELAS 64 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~ 64 (130)
+..|+.+.|..|++....|+...-
T Consensus 3 itiy~~p~C~t~rka~~~L~~~gi 26 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEHGI 26 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCC
Confidence 567899999999999988887643
No 282
>KOG3445 consensus Mitochondrial/chloroplast ribosomal protein 36a [Translation, ribosomal structure and biogenesis]
Probab=76.85 E-value=17 Score=23.38 Aligned_cols=75 Identities=17% Similarity=0.134 Sum_probs=49.3
Q ss_pred EeEEEcCCChhhhhhhH----HHHHHHHhCCCeEEEEEeccCcHhHHHhcCCCCCCEEE-EeeCCeEEeeE-ecCCHHHH
Q 032978 41 VVHFTAIWCMPSVAMNP----LFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFL-LMREGAVVDKL-VGANPEEI 114 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~----~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~-~~~~g~~~~~~-~g~~~~~l 114 (130)
+..=|..|-+.++-+.. .|.+++++.|+|.|+.-...- ..|.+. .|.||++...- ...+.+++
T Consensus 26 it~sfCnwggSSrGmR~Fle~~L~~~a~enP~v~i~v~~rrg-----------~hP~lraeY~NGre~vicvrnms~eev 94 (145)
T KOG3445|consen 26 ITVSFCNWGGSSRGMREFLESELPDLARENPGVVIYVEPRRG-----------QHPLLRAEYLNGRERVICVRNMSQEEV 94 (145)
T ss_pred EEEEEecCCCccHHHHHHHHHHHHHHHhhCCCeEEEEeccCC-----------CCceEEEEecCCceEEEeeccCCHHHH
Confidence 34456778887766655 567788888999887654332 245543 34677655433 34489999
Q ss_pred HHHHHHHhhhhc
Q 032978 115 RKRIDSFVQSIR 126 (130)
Q Consensus 115 ~~~i~~~~~~~~ 126 (130)
.+++..+....+
T Consensus 95 s~~~~lL~ds~G 106 (145)
T KOG3445|consen 95 SKKATLLRDSSG 106 (145)
T ss_pred HHHHHHHhccCC
Confidence 999988866554
No 283
>PRK10853 putative reductase; Provisional
Probab=75.16 E-value=3.9 Score=25.47 Aligned_cols=33 Identities=12% Similarity=0.037 Sum_probs=24.6
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccC
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD 78 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~ 78 (130)
+..|+.+.|..|++....|++- ++.+-.+|.-+
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~d~~k 34 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ-----GIDYRFHDYRV 34 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc-----CCCcEEeehcc
Confidence 4568899999999998888764 55556666544
No 284
>PRK10026 arsenate reductase; Provisional
Probab=75.10 E-value=4.6 Score=26.06 Aligned_cols=32 Identities=6% Similarity=-0.050 Sum_probs=23.8
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEecc
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVD 77 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~ 77 (130)
+..|+.+.|+.|++....|++. ++.|-.+|.-
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~-----gi~~~~~d~~ 35 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS-----GTEPTIIHYL 35 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCcEEEeee
Confidence 5578899999999999888765 4555555543
No 285
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=74.14 E-value=6.5 Score=23.86 Aligned_cols=32 Identities=13% Similarity=0.124 Sum_probs=21.5
Q ss_pred EEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcH
Q 032978 44 FTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVK 80 (130)
Q Consensus 44 f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~ 80 (130)
|+.+.|..|+++...|++- ++.+-.+|..+.+
T Consensus 1 Y~~~~C~t~rka~~~L~~~-----gi~~~~~d~~k~p 32 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEEN-----GIEYEFIDYKKEP 32 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHT-----T--EEEEETTTS-
T ss_pred CcCCCCHHHHHHHHHHHHc-----CCCeEeehhhhCC
Confidence 5778999999998888763 6777778887654
No 286
>COG3411 Ferredoxin [Energy production and conversion]
Probab=72.85 E-value=14 Score=20.49 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=24.9
Q ss_pred CCEEEEeeCCeEEeeEecCCHHHHHHHHHHHhhhh
Q 032978 91 MPTFLLMREGAVVDKLVGANPEEIRKRIDSFVQSI 125 (130)
Q Consensus 91 ~P~~~~~~~g~~~~~~~g~~~~~l~~~i~~~~~~~ 125 (130)
=|+++.|.+| .=+...+++.....+++++...
T Consensus 17 gPvl~vYpeg---vWY~~V~p~~a~rIv~~hl~~G 48 (64)
T COG3411 17 GPVLVVYPEG---VWYTRVDPEDARRIVQSHLLGG 48 (64)
T ss_pred CCEEEEecCC---eeEeccCHHHHHHHHHHHHhCC
Confidence 4999999998 2233569999999999997644
No 287
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=72.36 E-value=13 Score=20.02 Aligned_cols=51 Identities=12% Similarity=0.078 Sum_probs=32.0
Q ss_pred EEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccC----cHhHHHhcCCCCCCEEEE
Q 032978 43 HFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD----VKDVASKLEVKAMPTFLL 96 (130)
Q Consensus 43 ~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~----~~~~~~~~~v~~~P~~~~ 96 (130)
.|+.+.|+.|++..-.++...-. .....++... .+.+.+......+|++..
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALLGIP---YEWVEVDILKGETRTPEFLALNPNGEVPVLEL 57 (73)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC---cEEEEecCCCcccCCHHHHHhCCCCCCCEEEE
Confidence 47788999999887777765433 4444555432 234444444567899764
No 288
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=72.09 E-value=15 Score=20.42 Aligned_cols=56 Identities=9% Similarity=0.003 Sum_probs=34.1
Q ss_pred eEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccC----cHhHHHhcCCCCCCEEEEeeCCeE
Q 032978 42 VHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD----VKDVASKLEVKAMPTFLLMREGAV 102 (130)
Q Consensus 42 v~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~----~~~~~~~~~v~~~P~~~~~~~g~~ 102 (130)
..|+.+.|+.|++..-.+++..- ...+..+|... .+++.+--....+|++. .+|..
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl---~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~~ 61 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGL---RCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDNI 61 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCC---CCEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCEE
Confidence 35778889999887766655533 24555666532 23444444566789985 35543
No 289
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=70.04 E-value=7.4 Score=24.56 Aligned_cols=31 Identities=6% Similarity=0.121 Sum_probs=22.8
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEec
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDV 76 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~ 76 (130)
+..|+.+.|..|++....|++. ++.+-.+|.
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~-----gi~~~~~d~ 33 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKAS-----GHDVEVQDI 33 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCcEEEec
Confidence 5578889999999998888765 444444554
No 290
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=67.99 E-value=6.7 Score=25.91 Aligned_cols=21 Identities=24% Similarity=0.542 Sum_probs=17.2
Q ss_pred hHHHhcCCCCCCEEEEeeCCe
Q 032978 81 DVASKLEVKAMPTFLLMREGA 101 (130)
Q Consensus 81 ~~~~~~~v~~~P~~~~~~~g~ 101 (130)
..+.++||.++|++++..++.
T Consensus 160 ~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 160 KLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHcCCCccCEEEEEeCCe
Confidence 556788999999999987654
No 291
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=66.31 E-value=7.7 Score=26.36 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=22.7
Q ss_pred hHHHhcCCCCCCEEEEeeCCeEEeeEecCC-HHHHHHHH
Q 032978 81 DVASKLEVKAMPTFLLMREGAVVDKLVGAN-PEEIRKRI 118 (130)
Q Consensus 81 ~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~-~~~l~~~i 118 (130)
..+.+.|+.++|+|++-.++..-..+.|.+ .+.+++++
T Consensus 170 ~~A~~~Gv~GVP~fvv~~~~~~~e~fwG~Drl~~~~~~l 208 (209)
T cd03021 170 DEALKYGAFGLPWIVVTNDKGKTEMFFGSDRFEQVADFL 208 (209)
T ss_pred HHHHHcCCCCCCEEEEEcCCCCccceecCCcHHHHHHHh
Confidence 345677999999998864322122455664 35555443
No 292
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=65.03 E-value=11 Score=27.98 Aligned_cols=57 Identities=18% Similarity=0.398 Sum_probs=43.7
Q ss_pred eEEEEEeccCcHhHHHhcCCCCCCEEEEe--eCCeEEeeEecC-CHHHHHHHHHHHhhhh
Q 032978 69 VLFLSVDVDDVKDVASKLEVKAMPTFLLM--REGAVVDKLVGA-NPEEIRKRIDSFVQSI 125 (130)
Q Consensus 69 v~~~~vd~~~~~~~~~~~~v~~~P~~~~~--~~g~~~~~~~g~-~~~~l~~~i~~~~~~~ 125 (130)
...+..|.++...+..-|.+..+|.+.++ .-|+.+.+..|. .++++.+-+.+++...
T Consensus 133 wllV~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~~~ 192 (356)
T KOG1364|consen 133 WLLVLDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFIDSC 192 (356)
T ss_pred EEEEeeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHHhcC
Confidence 44445566677778888899999988777 568899888877 7788888888877553
No 293
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=64.71 E-value=27 Score=20.68 Aligned_cols=44 Identities=11% Similarity=0.065 Sum_probs=25.9
Q ss_pred HHHHHHHhCCCeEEEEEeccCcHhHHHhc----C----CCCCCEEEEeeCCeEEe
Q 032978 58 LFEELASAYPDVLFLSVDVDDVKDVASKL----E----VKAMPTFLLMREGAVVD 104 (130)
Q Consensus 58 ~l~~l~~~~~~v~~~~vd~~~~~~~~~~~----~----v~~~P~~~~~~~g~~~~ 104 (130)
.+..+.+. .+|.|-.+|++.+++..+.+ + -..+|.+++ ++..+.
T Consensus 21 ~v~~lL~~-k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi--~~~~iG 72 (92)
T cd03030 21 EVLGFLEA-KKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFN--GDEYCG 72 (92)
T ss_pred HHHHHHHH-CCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEE--CCEEee
Confidence 33444333 37999999998776554432 2 245677554 555443
No 294
>PRK13669 hypothetical protein; Provisional
Probab=63.27 E-value=27 Score=20.19 Aligned_cols=55 Identities=25% Similarity=0.401 Sum_probs=37.6
Q ss_pred HHHHHHhCCCeEEEEEeccCcHhHHHhcCCCCCCEEEEeeCCeEEeeEecCCHHHHHHHHHHHhhh
Q 032978 59 FEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDSFVQS 124 (130)
Q Consensus 59 l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~~i~~~~~~ 124 (130)
++.+ +++|++.+...++-.+-..+++ -| +.+-||+.+. +.++++|.+.|.+++..
T Consensus 20 ~~~L-e~dP~~dVie~gCls~CG~C~~-----~~--FAlVng~~V~---a~t~eeL~~kI~~~i~e 74 (78)
T PRK13669 20 FEKL-EKDPNLDVLEYGCLGYCGICSE-----GL--FALVNGEVVE---GETPEELVENIYAHLEE 74 (78)
T ss_pred HHHH-HhCCCceEEEcchhhhCcCccc-----Cc--eEEECCeEee---cCCHHHHHHHHHHHHhh
Confidence 4445 5679999888887665433332 23 3344787665 78999999999988765
No 295
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=63.02 E-value=21 Score=26.78 Aligned_cols=53 Identities=11% Similarity=0.184 Sum_probs=33.8
Q ss_pred eEEEEEecc-CcH--hHHHhcCCCCC-CEEEEeeCCeEEeeEecC-CHHHHHHHHHHH
Q 032978 69 VLFLSVDVD-DVK--DVASKLEVKAM-PTFLLMREGAVVDKLVGA-NPEEIRKRIDSF 121 (130)
Q Consensus 69 v~~~~vd~~-~~~--~~~~~~~v~~~-P~~~~~~~g~~~~~~~g~-~~~~l~~~i~~~ 121 (130)
+++..+-|. ..+ .-..++|+-+- +..++|.+|+.+....+. -.+.|.+.|+++
T Consensus 299 lkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv~~~~~~~~l~~~i~~~ 356 (360)
T PRK00366 299 LKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIKTLPEENIVEELEAEIEAY 356 (360)
T ss_pred cEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEeeeeChHhHHHHHHHHHHHH
Confidence 777777774 222 23456777655 468888999999876655 235555555554
No 296
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=61.52 E-value=32 Score=20.48 Aligned_cols=67 Identities=21% Similarity=0.460 Sum_probs=36.8
Q ss_pred CChhhhh------hhHHHHH-HHHhCCC--eEEEEEeccCcH------hHHHhc--CCCCCCEEEEeeCCeEEeeEecC-
Q 032978 48 WCMPSVA------MNPLFEE-LASAYPD--VLFLSVDVDDVK------DVASKL--EVKAMPTFLLMREGAVVDKLVGA- 109 (130)
Q Consensus 48 ~C~~C~~------~~~~l~~-l~~~~~~--v~~~~vd~~~~~------~~~~~~--~v~~~P~~~~~~~g~~~~~~~g~- 109 (130)
-|+.|.. ....|+. |.++||+ +.|-.||+...+ +++++. .-.-+|-+++ +|+.+.. |.
T Consensus 8 ~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i--~~eiV~E--Gnp 83 (93)
T PF07315_consen 8 ICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVI--NDEIVAE--GNP 83 (93)
T ss_dssp --GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEE--TTEEEEE--SS-
T ss_pred cchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEE--CCEEEec--CCc
Confidence 3777743 3445544 5678864 899999987643 333332 2335787666 7888876 55
Q ss_pred CHHHHHHHH
Q 032978 110 NPEEIRKRI 118 (130)
Q Consensus 110 ~~~~l~~~i 118 (130)
....+.+++
T Consensus 84 ~LK~I~~~~ 92 (93)
T PF07315_consen 84 QLKDIYEEM 92 (93)
T ss_dssp -HHHHHHHH
T ss_pred cHHHHHHhh
Confidence 455555544
No 297
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=59.61 E-value=27 Score=19.03 Aligned_cols=52 Identities=12% Similarity=0.094 Sum_probs=32.7
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEecc----CcHhHHHhcCCCCCCEEE
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVD----DVKDVASKLEVKAMPTFL 95 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~----~~~~~~~~~~v~~~P~~~ 95 (130)
+-.|+.+.|+.|++..-.++...-. +.+..++.. ..+.+.+......+|++.
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~ 57 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVD---YELVPVDLTKGEHKSPEHLARNPFGQIPALE 57 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCC---cEEEEeCccccccCCHHHHhhCCCCCCCEEE
Confidence 4456677799998888777766433 444445543 223455555667899875
No 298
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=58.10 E-value=35 Score=21.78 Aligned_cols=27 Identities=15% Similarity=0.266 Sum_probs=19.8
Q ss_pred cCCChhhhhhhHHHHHHHHhCCCeEEEEEe
Q 032978 46 AIWCMPSVAMNPLFEELASAYPDVLFLSVD 75 (130)
Q Consensus 46 ~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd 75 (130)
-+-|..|. +.++++.++||++.+..++
T Consensus 105 ~~pC~SC~---~vi~qF~~~~pni~~~v~~ 131 (133)
T PF14424_consen 105 LPPCESCS---NVIEQFKKDFPNIKVNVVY 131 (133)
T ss_pred CCcChhHH---HHHHHHHHHCCCcEEEEec
Confidence 35588887 4778888889988776553
No 299
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=57.79 E-value=21 Score=20.56 Aligned_cols=32 Identities=22% Similarity=0.440 Sum_probs=20.5
Q ss_pred CCCEEEEe-eCCeEEeeEe--cCCHHHHHHHHHHH
Q 032978 90 AMPTFLLM-REGAVVDKLV--GANPEEIRKRIDSF 121 (130)
Q Consensus 90 ~~P~~~~~-~~g~~~~~~~--g~~~~~l~~~i~~~ 121 (130)
+-|+++++ .+|+.+.+.. +.+.+.+.+++.+.
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~k 75 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKTDEIEEFLNEK 75 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHH
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHh
Confidence 46898888 5777666544 44899999998875
No 300
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=57.10 E-value=64 Score=22.49 Aligned_cols=68 Identities=9% Similarity=0.025 Sum_probs=44.5
Q ss_pred CChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhc-CCCCCCEEEEeeCCeEEeeEecCCHHHHHHHHHHHhhhh
Q 032978 48 WCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKL-EVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDSFVQSI 125 (130)
Q Consensus 48 ~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~-~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~~i~~~~~~~ 125 (130)
.|+.|+.+.-.|. .+-....+-.||+...++-.+.. .-...|.+.+ +|+. -.+-..++++|++.+...
T Consensus 20 dcpf~qr~~m~L~---~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~--d~~~-----~tDs~~Ie~~Lee~l~~p 88 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKGVPFKVTTVDLSRKPEWFLDISPGGKPPVLKF--DEKW-----VTDSDKIEEFLEEKLPPP 88 (221)
T ss_pred CChhHHHHHHHHH---HcCCCceEEEeecCCCcHHHHhhCCCCCCCeEEe--CCce-----eccHHHHHHHHHHhcCCC
Confidence 4888887777666 33335778889999888777654 4556776555 2321 225577888888776543
No 301
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=56.92 E-value=37 Score=25.37 Aligned_cols=77 Identities=10% Similarity=0.139 Sum_probs=47.8
Q ss_pred ChhhhhhhH----HHHHHHHhC---C-CeEEEEEeccCcH--h-HHHhcCCCC--CCEEEEeeCCeEEeeEecC-CHHHH
Q 032978 49 CMPSVAMNP----LFEELASAY---P-DVLFLSVDVDDVK--D-VASKLEVKA--MPTFLLMREGAVVDKLVGA-NPEEI 114 (130)
Q Consensus 49 C~~C~~~~~----~l~~l~~~~---~-~v~~~~vd~~~~~--~-~~~~~~v~~--~P~~~~~~~g~~~~~~~g~-~~~~l 114 (130)
||.|-+..- .+.++.+.+ + .+.+..+-|--|. + .-.++|+.+ .|...+|.+|+.+.+..+. -.++|
T Consensus 264 CP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~~~~~~~~eel 343 (361)
T COG0821 264 CPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKKLPEEDIVEEL 343 (361)
T ss_pred CCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEecChhhHHHHH
Confidence 888854433 333333333 2 3666666665432 1 123456643 6889999999999987766 35888
Q ss_pred HHHHHHHhhhh
Q 032978 115 RKRIDSFVQSI 125 (130)
Q Consensus 115 ~~~i~~~~~~~ 125 (130)
...++++....
T Consensus 344 ~~~i~~~~~~~ 354 (361)
T COG0821 344 EALIEAYAEER 354 (361)
T ss_pred HHHHHHHHHHh
Confidence 88888776543
No 302
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=54.91 E-value=28 Score=23.04 Aligned_cols=25 Identities=8% Similarity=0.049 Sum_probs=22.0
Q ss_pred EEEcCCChhhhhhhHHHHHHHHhCC
Q 032978 43 HFTAIWCMPSVAMNPLFEELASAYP 67 (130)
Q Consensus 43 ~f~~~~C~~C~~~~~~l~~l~~~~~ 67 (130)
+|+..-||.|--..+.|+++.+.++
T Consensus 3 ~~~D~~cP~cyl~~~~l~~~~~~~~ 27 (201)
T cd03024 3 IWSDVVCPWCYIGKRRLEKALAELG 27 (201)
T ss_pred EEecCcCccHHHHHHHHHHHHHhCC
Confidence 4778889999999999999998883
No 303
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=54.11 E-value=61 Score=21.37 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=33.5
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEecc
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVD 77 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~ 77 (130)
.++.. ++..|=+-+-+-|...-..+.+.+.++.++.++.|..|
T Consensus 43 ~gk~~--vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~~~Vl~IS~D 85 (158)
T COG2077 43 AGKKK--VISVFPSIDTPVCATQVRKFNEEAAKLGNTVVLCISMD 85 (158)
T ss_pred CCceE--EEEEccCCCCchhhHHHHHHHHHHhccCCcEEEEEeCC
Confidence 44444 15566678889999999999999999988888888765
No 304
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=53.79 E-value=51 Score=20.41 Aligned_cols=87 Identities=20% Similarity=0.286 Sum_probs=51.0
Q ss_pred CCCceEeEEeEEEcCCCh-hhhhhhHHHHHHHHhC--------C--CeEEEEEeccCcHhHHHhc-CCC-CCCEEEEe--
Q 032978 33 QGCPVRNVVVHFTAIWCM-PSVAMNPLFEELASAY--------P--DVLFLSVDVDDVKDVASKL-EVK-AMPTFLLM-- 97 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~-~C~~~~~~l~~l~~~~--------~--~v~~~~vd~~~~~~~~~~~-~v~-~~P~~~~~-- 97 (130)
+..+. +|.|...--. .-....+.++.+++++ . -+.|+.---++..+..++| +.. ..|.++++
T Consensus 13 n~~p~---lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede~tdsLRDf~nL~d~~P~LviLDi 89 (116)
T cd03071 13 NEGPC---LVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDDMTDSLRDYTNLPEAAPLLTILDM 89 (116)
T ss_pred cCCce---EEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccchHHHHHHHhcCCCccCceEEEEec
Confidence 55777 7888854443 5677777777766543 1 1333322223334455555 444 56877776
Q ss_pred -eCCeEEeeEecCCHHHHHHHHHHHh
Q 032978 98 -REGAVVDKLVGANPEEIRKRIDSFV 122 (130)
Q Consensus 98 -~~g~~~~~~~g~~~~~l~~~i~~~~ 122 (130)
..++.+-.....+.+.+.+|+..++
T Consensus 90 p~r~~~v~~~eeIT~e~~~~fv~~yl 115 (116)
T cd03071 90 SARAKYVMDVEEITPAIVEAFVSDFL 115 (116)
T ss_pred cccceEeCchHhcCHHHHHHHHHHhh
Confidence 3344444444448899999998875
No 305
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=53.36 E-value=43 Score=19.34 Aligned_cols=59 Identities=17% Similarity=0.315 Sum_probs=38.3
Q ss_pred hHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCCCCCCEEEEeeCCeEEeeEecCCHHHHHHHHHHHhhhh
Q 032978 56 NPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDSFVQSI 125 (130)
Q Consensus 56 ~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~~i~~~~~~~ 125 (130)
...++.|. +.|++.+...++-.+=..+. ...| .+-||+.+. +.++++|.+.|.+.+...
T Consensus 17 ~~~~~~Le-~~p~~~Vie~gCl~~Cg~C~------~~pF-AlVnG~~V~---A~t~eeL~~kI~~~i~e~ 75 (78)
T PF07293_consen 17 DQVYEKLE-KDPDIDVIEYGCLSYCGPCA------KKPF-ALVNGEIVA---AETAEELLEKIKEKIEEN 75 (78)
T ss_pred HHHHHHHh-cCCCccEEEcChhhhCcCCC------CCcc-EEECCEEEe---cCCHHHHHHHHHHHHhcc
Confidence 34556665 45888888887765543332 2222 334686665 789999999999887654
No 306
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=52.90 E-value=73 Score=21.92 Aligned_cols=32 Identities=13% Similarity=0.030 Sum_probs=23.9
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEe
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVD 75 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd 75 (130)
+.+|....|+.|......+.. ....+.++.|+
T Consensus 112 lalFvkd~C~~C~~~~~~l~a---~~~~~Diylvg 143 (200)
T TIGR03759 112 LALFVKDDCVACDARVQRLLA---DNAPLDLYLVG 143 (200)
T ss_pred EEEEeCCCChHHHHHHHHHhc---CCCceeEEEec
Confidence 567888999999888777632 22358888888
No 307
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=51.68 E-value=74 Score=21.62 Aligned_cols=87 Identities=21% Similarity=0.301 Sum_probs=44.8
Q ss_pred cCCCceEeEEeEEEcCC-ChhhhhhhHHHHHHHHhC----CCeEEEEEe--------------------------ccCcH
Q 032978 32 NQGCPVRNVVVHFTAIW-CMPSVAMNPLFEELASAY----PDVLFLSVD--------------------------VDDVK 80 (130)
Q Consensus 32 ~~~~~~~~~vv~f~~~~-C~~C~~~~~~l~~l~~~~----~~v~~~~vd--------------------------~~~~~ 80 (130)
+.++.+ ++.||.-. ---|-...-.+...+.++ -.|..+.+| .|.+.
T Consensus 31 y~gkyv---vlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ntprk~gGlg~~~iPllsD~~~ 107 (196)
T KOG0852|consen 31 YKGKYV---VLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWINTPRKQGGLGPLNIPLLSDLNH 107 (196)
T ss_pred hcccEE---EEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHhcCchhhCCcCccccceeeccch
Confidence 488999 88888433 223322223333333333 235555554 13356
Q ss_pred hHHHhcCCC----CCC---EEEEeeCCeEEe-----eEecCCHHHHHHHHHHH
Q 032978 81 DVASKLEVK----AMP---TFLLMREGAVVD-----KLVGANPEEIRKRIDSF 121 (130)
Q Consensus 81 ~~~~~~~v~----~~P---~~~~~~~g~~~~-----~~~g~~~~~l~~~i~~~ 121 (130)
+++++|||. +++ .+++..+|...+ --.|.+-++....++.+
T Consensus 108 ~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLvqAf 160 (196)
T KOG0852|consen 108 EISRDYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDETLRLVQAF 160 (196)
T ss_pred hhHHhcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHHHHHHHHH
Confidence 889999873 555 344445554332 11133556665555544
No 308
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=50.80 E-value=75 Score=21.45 Aligned_cols=62 Identities=21% Similarity=0.388 Sum_probs=34.7
Q ss_pred CCCceEeEEeEEE----cCCCh--hhhhhhHHHHHHHHhCCCeEEEEEeccC---------------------cHhHHHh
Q 032978 33 QGCPVRNVVVHFT----AIWCM--PSVAMNPLFEELASAYPDVLFLSVDVDD---------------------VKDVASK 85 (130)
Q Consensus 33 ~~~~~~~~vv~f~----~~~C~--~C~~~~~~l~~l~~~~~~v~~~~vd~~~---------------------~~~~~~~ 85 (130)
.++++ |++|| +|.|. .| .++..++++.+. +..++.+..|. ..++.+.
T Consensus 89 ~nk~v---V~f~YP~asTPGCTkQaC-gFRDnY~k~kka--~aeV~GlS~D~s~sqKaF~sKqnlPYhLLSDpk~e~ik~ 162 (211)
T KOG0855|consen 89 GNKPV---VLFFYPAASTPGCTKQAC-GFRDNYEKFKKA--GAEVIGLSGDDSASQKAFASKQNLPYHLLSDPKNEVIKD 162 (211)
T ss_pred CCCcE---EEEEeccCCCCCcccccc-cccccHHHHhhc--CceEEeeccCchHHHHHhhhhccCCeeeecCcchhHHHH
Confidence 44577 88888 45552 34 345555666544 34444444332 2367778
Q ss_pred cCCCCCC--------EEEEeeCC
Q 032978 86 LEVKAMP--------TFLLMREG 100 (130)
Q Consensus 86 ~~v~~~P--------~~~~~~~g 100 (130)
+|+...| +++|.++|
T Consensus 163 lGa~k~p~gg~~~Rsh~if~kg~ 185 (211)
T KOG0855|consen 163 LGAPKDPFGGLPGRSHYIFDKGG 185 (211)
T ss_pred hCCCCCCCCCcccceEEEEecCC
Confidence 8877655 55665554
No 309
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=49.83 E-value=43 Score=19.33 Aligned_cols=32 Identities=31% Similarity=0.497 Sum_probs=24.2
Q ss_pred CCEEEEeeCCeEEeeEecC-CHHHHHHHHHHHhhh
Q 032978 91 MPTFLLMREGAVVDKLVGA-NPEEIRKRIDSFVQS 124 (130)
Q Consensus 91 ~P~~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~ 124 (130)
-.++.+|..|+.+-. |. +.+++.+.+++++..
T Consensus 49 ~~t~~IF~sGki~it--Gaks~~~~~~a~~~i~~~ 81 (86)
T PF00352_consen 49 KATVLIFSSGKIVIT--GAKSEEEAKKAIEKILPI 81 (86)
T ss_dssp TEEEEEETTSEEEEE--EESSHHHHHHHHHHHHHH
T ss_pred cEEEEEEcCCEEEEE--ecCCHHHHHHHHHHHHHH
Confidence 458889999998865 55 788888887777543
No 310
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=49.59 E-value=82 Score=21.49 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=30.0
Q ss_pred EeEEEcC--CChhhhhhhHHHHHHHHhC--CCeEEEEEeccC
Q 032978 41 VVHFTAI--WCMPSVAMNPLFEELASAY--PDVLFLSVDVDD 78 (130)
Q Consensus 41 vv~f~~~--~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~ 78 (130)
.|.|..| .-|.|-..+..+.+++-+| .+++.+.+.++.
T Consensus 35 ~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~ 76 (224)
T KOG0854|consen 35 GVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDD 76 (224)
T ss_pred EEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhh
Confidence 6778855 5799999999999998888 468888877653
No 311
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=47.83 E-value=1e+02 Score=22.32 Aligned_cols=96 Identities=17% Similarity=0.203 Sum_probs=49.5
Q ss_pred hhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccC-c----HhHHHhcCCCCCCEEE
Q 032978 21 ESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD-V----KDVASKLEVKAMPTFL 95 (130)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~-~----~~~~~~~~v~~~P~~~ 95 (130)
..|...+.......... ...|+.+.|..-..-...+.+|+++. ++.++.-+-.. | -+++++++. |++.
T Consensus 168 ~~~~~i~~~l~~~~~~~---~~~~~nTIC~aT~~RQ~a~~~La~~v-D~miVIGg~~SsNT~kL~eia~~~~~---~t~~ 240 (281)
T PF02401_consen 168 EKFEEIVEALKKRFPEL---EGPVFNTICYATQNRQEAARELAKEV-DAMIVIGGKNSSNTRKLAEIAKEHGK---PTYH 240 (281)
T ss_dssp HHHHHHHHHHHHHSTCE---E-SCC-S--CHHHHHHHHHHHHHCCS-SEEEEES-TT-HHHHHHHHHHHHCTT---CEEE
T ss_pred HHHHHHHHHHHHhCccc---cCCCCCCCCHhHHHHHHHHHHHHhhC-CEEEEecCCCCccHHHHHHHHHHhCC---CEEE
Confidence 34555444432223333 33488999999888888888888764 44333332221 2 145666543 6655
Q ss_pred E----------eeCCeEEeeEecC-CHHHHHHHHHHHhh
Q 032978 96 L----------MREGAVVDKLVGA-NPEEIRKRIDSFVQ 123 (130)
Q Consensus 96 ~----------~~~g~~~~~~~g~-~~~~l~~~i~~~~~ 123 (130)
+ +++.+.+.-..|. +++.+.+-+-..+.
T Consensus 241 Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eVi~~l~ 279 (281)
T PF02401_consen 241 IETADELDPEWLKGVKKVGITAGASTPDWIIEEVIDRLE 279 (281)
T ss_dssp ESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHHHHHHH
T ss_pred eCCccccCHhHhCCCCEEEEEccCCCCHHHHHHHHHHHh
Confidence 4 2344566767777 77777766666554
No 312
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=47.28 E-value=23 Score=19.22 Aligned_cols=24 Identities=21% Similarity=0.247 Sum_probs=15.7
Q ss_pred CCCceEeEEeEEEc-----------CCChhhhhhhHHH
Q 032978 33 QGCPVRNVVVHFTA-----------IWCMPSVAMNPLF 59 (130)
Q Consensus 33 ~~~~~~~~vv~f~~-----------~~C~~C~~~~~~l 59 (130)
.+.+| +-.-.. |=||.|+.+...+
T Consensus 23 ~G~pV---vALCGk~wvp~rdp~~~PVCP~Ck~iye~l 57 (58)
T PF11238_consen 23 MGTPV---VALCGKVWVPTRDPKPFPVCPECKEIYESL 57 (58)
T ss_pred cCcee---EeeeCceeCCCCCCCCCCCCcCHHHHHHhc
Confidence 67777 554443 3399999877654
No 313
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=47.26 E-value=46 Score=17.97 Aligned_cols=53 Identities=11% Similarity=0.003 Sum_probs=31.1
Q ss_pred EEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccC-cHhHHHhcCCCCCCEEEE
Q 032978 43 HFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD-VKDVASKLEVKAMPTFLL 96 (130)
Q Consensus 43 ~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~-~~~~~~~~~v~~~P~~~~ 96 (130)
.|+.+.|+.|.+..-.+....... .+..+.+|... .+++.+......+|.++.
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~~~i-~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~ 56 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETGLGD-DVELVLVNPWSDDESLLAVNPLGKIPALVL 56 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhCCCC-CcEEEEcCcccCChHHHHhCCCCCCCEEEE
Confidence 467888999988777666621111 24445555432 344444445667898654
No 314
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=47.17 E-value=25 Score=23.04 Aligned_cols=25 Identities=12% Similarity=-0.036 Sum_probs=21.9
Q ss_pred EEEcCCChhhhhhhHHHHHHHHhCC
Q 032978 43 HFTAIWCMPSVAMNPLFEELASAYP 67 (130)
Q Consensus 43 ~f~~~~C~~C~~~~~~l~~l~~~~~ 67 (130)
+|+..-||.|--..+.|+++...++
T Consensus 3 ~~~D~~cP~cy~~~~~l~~~~~~~~ 27 (192)
T cd03022 3 FYFDFSSPYSYLAHERLPALAARHG 27 (192)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHhC
Confidence 5778889999999999999988874
No 315
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=45.36 E-value=64 Score=19.16 Aligned_cols=32 Identities=13% Similarity=0.262 Sum_probs=23.6
Q ss_pred CCCEEEEee--CCeEEeeEecCCHHHHHHHHHHHhhh
Q 032978 90 AMPTFLLMR--EGAVVDKLVGANPEEIRKRIDSFVQS 124 (130)
Q Consensus 90 ~~P~~~~~~--~g~~~~~~~g~~~~~l~~~i~~~~~~ 124 (130)
.=|++++|+ +|.- +...+++.+...|++++..
T Consensus 52 ~gp~vvvyP~~~g~w---y~~v~p~~v~~Iv~~hl~~ 85 (97)
T cd03062 52 FAGNVIIYPKGDGIW---YGRVTPEHVPPIVDRLILG 85 (97)
T ss_pred cCCEEEEEeCCCeeE---EeecCHHHHHHHHHHHhcC
Confidence 359999999 6633 3355889999999888754
No 316
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=45.25 E-value=84 Score=21.13 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=33.2
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCc-HhHHHhcCCCCCCEEE
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDV-KDVASKLEVKAMPTFL 95 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~-~~~~~~~~v~~~P~~~ 95 (130)
+-.|+.+.|+.|.+..=.|++..- .+.+..+|.... +++.+--....+|++.
T Consensus 11 ~~Ly~~~~s~~~~rv~~~L~e~gl---~~e~~~v~~~~~~~~~~~~nP~g~VPvL~ 63 (211)
T PRK09481 11 MTLFSGPTDIYSHQVRIVLAEKGV---SVEIEQVEKDNLPQDLIDLNPYQSVPTLV 63 (211)
T ss_pred eEEeCCCCChhHHHHHHHHHHCCC---CCEEEeCCcccCCHHHHHhCCCCCCCEEE
Confidence 556777889999988876666532 245555665433 3444444466799986
No 317
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=45.16 E-value=25 Score=26.42 Aligned_cols=73 Identities=14% Similarity=0.164 Sum_probs=39.7
Q ss_pred ChhhhhhhHHHHHHH----HhC----CCeEEEEEeccCcHh--H-HHhcCCC-CCC-EEEEeeCCeEEeeE-ecCC-HHH
Q 032978 49 CMPSVAMNPLFEELA----SAY----PDVLFLSVDVDDVKD--V-ASKLEVK-AMP-TFLLMREGAVVDKL-VGAN-PEE 113 (130)
Q Consensus 49 C~~C~~~~~~l~~l~----~~~----~~v~~~~vd~~~~~~--~-~~~~~v~-~~P-~~~~~~~g~~~~~~-~g~~-~~~ 113 (130)
||.|-+..=.+.+++ +.. .++++..+-|.-|.. . -.+||+- +-| ..++|++|+.+.+. .... .+.
T Consensus 271 CPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~k~~~ee~~vd~ 350 (359)
T PF04551_consen 271 CPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVKKVIPEEEIVDE 350 (359)
T ss_dssp ----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEEEE-CSTCHHHH
T ss_pred CCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEEecCCHHHHHHH
Confidence 666644443344433 333 368899998876542 1 1245665 434 48889999999987 3433 467
Q ss_pred HHHHHHHH
Q 032978 114 IRKRIDSF 121 (130)
Q Consensus 114 l~~~i~~~ 121 (130)
|.+.|+++
T Consensus 351 L~~~I~~~ 358 (359)
T PF04551_consen 351 LIELIEEH 358 (359)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 77777654
No 318
>PF12617 LdpA_C: Iron-Sulfur binding protein C terminal; InterPro: IPR021039 This entry represents the C-terminal region of the iron-sulphur protein LdpA (Light dependent period), which is found in phototropic organisms. LdpA was originally identified in cyanobacteria where it is involved in light-dependent modulation of the circadian clock. The presence of iron-sulphur clusters on LdpA suggests that it may modulate the circadian clock as an indirect function of light intensity by sensing changes in cellular physiology [].
Probab=44.95 E-value=87 Score=21.26 Aligned_cols=68 Identities=19% Similarity=0.356 Sum_probs=44.8
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhc----C-CCCCCEEEEe-eCCeEEeeEecC
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKL----E-VKAMPTFLLM-REGAVVDKLVGA 109 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~----~-v~~~P~~~~~-~~g~~~~~~~g~ 109 (130)
-|.+++. =+.-..|...|+.++...+.++.+.|.|.....+.+.+ . +...|...++ -+|+......|.
T Consensus 10 AiEIHT~-~gr~~~F~~lw~~l~~~~~~Lk~lAiSc~~~~~li~~L~~~~~~l~~l~~~~iWQ~DGRPMSGDIG~ 83 (183)
T PF12617_consen 10 AIEIHTQ-VGRLAAFERLWQALAPSVPQLKLLAISCPDGEGLIDYLWQLYEILRPLPCPLIWQLDGRPMSGDIGD 83 (183)
T ss_pred EEEEecC-CCccHHHHHHHHHHHhhhhhccEEEEECCCCHHHHHHHHHHHHHHhccCCCeeEeeCCcccCCCCCC
Confidence 3444443 34446677777777766677899999988776555433 2 3456766666 688888777776
No 319
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=43.32 E-value=38 Score=21.94 Aligned_cols=17 Identities=24% Similarity=0.532 Sum_probs=14.2
Q ss_pred HhHHHhcCCCCCCEEEE
Q 032978 80 KDVASKLEVKAMPTFLL 96 (130)
Q Consensus 80 ~~~~~~~~v~~~P~~~~ 96 (130)
.+++++++++++|.++-
T Consensus 121 ddLA~rL~l~HYPvLIt 137 (142)
T PF11072_consen 121 DDLARRLGLSHYPVLIT 137 (142)
T ss_pred HHHHHHhCCCcccEEee
Confidence 37899999999998654
No 320
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=43.12 E-value=70 Score=18.90 Aligned_cols=66 Identities=14% Similarity=0.084 Sum_probs=39.2
Q ss_pred CCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhc-CCCCCCEEEEeeCCeEEeeEecCCHHHHHHHHHHHh
Q 032978 47 IWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKL-EVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDSFV 122 (130)
Q Consensus 47 ~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~-~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~~i~~~~ 122 (130)
.+|+.|++..=.|.+..- ...+..+|....++-..+. ....+|++. .+|..+ .+...+.+.|++..
T Consensus 20 g~cpf~~rvrl~L~eKgi---~ye~~~vd~~~~p~~~~~~nP~g~vPvL~--~~~~~i-----~eS~~I~eYLde~~ 86 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGV---VFNVTTVDMKRKPEDLKDLAPGTQPPFLL--YNGEVK-----TDNNKIEEFLEETL 86 (91)
T ss_pred CCChhHHHHHHHHHHCCC---ceEEEEeCCCCCCHHHHHhCCCCCCCEEE--ECCEEe-----cCHHHHHHHHHHHc
Confidence 468999887766655421 2555667766655555444 456799654 244333 24566777776653
No 321
>cd07973 Spt4 Transcription elongation factor Spt4. Spt4 is a transcription elongation factor. Three transcription-elongation factors Spt4, Spt5, and Spt6, are conserved among eukaryotes and are essential for transcription via the modulation of chromatin structure. It is known that Spt4, Spt5, and Spt6 are general transcription-elongation factors, controlling transcription both positively and negatively in important regulatory and developmental roles. Spt4 functions entirely in the context of the Spt4-Spt5 heterodimer and it has been found only as a complex to Spt5 in Yeast and Human. Spt4 is a small protein that has zinc finger at the N-terminus. Spt5 is a large protein that has several interesting structural features of an acidic N-terminus, a single NGN domain, five or six KOW domains, and a set of simple C-termianl repeats. Spt4 binds to Spt5 NGN domain. Unlike Spt5, Spt4 is not essential for viability in yeast, however Spt4 is critical for normal function of the Spt4-Spt5 compl
Probab=42.96 E-value=42 Score=20.26 Aligned_cols=69 Identities=17% Similarity=0.263 Sum_probs=39.5
Q ss_pred EEcCCChhhhhhhH-------HHHHHHHhCCCeEEEEEeccCcHhHHHhcCCCCCCEEEEeeCCeEEeeEecCCHHHHHH
Q 032978 44 FTAIWCMPSVAMNP-------LFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRK 116 (130)
Q Consensus 44 f~~~~C~~C~~~~~-------~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~ 116 (130)
|....||.|..++. ..+-+...|.++..+ +|-+ ...+++.+++... ..|...-...|.-++++.+
T Consensus 18 f~~~gCpnC~~~l~~~g~~~~v~~~tT~~f~G~i~i-~dP~-~SwVAk~l~i~~~------~pG~YAi~V~g~lp~~i~~ 89 (98)
T cd07973 18 FERDGCPNCEGYLDMKGNHERVYDCTSPNFEGIIAL-MDPE-KSWVARWQRIDKF------VPGIYAISVSGRLPEDIVE 89 (98)
T ss_pred ccCCCCCCCcchhccCCCccccccccCCCcceEEEE-ECCc-hhHHHHHhCCCCC------CCCeEEEEecCcCCHHHHH
Confidence 77889999964332 223345556665443 3444 3467888888632 2344444455666666666
Q ss_pred HHHH
Q 032978 117 RIDS 120 (130)
Q Consensus 117 ~i~~ 120 (130)
.++.
T Consensus 90 ~l~~ 93 (98)
T cd07973 90 ELES 93 (98)
T ss_pred HHHH
Confidence 6554
No 322
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=42.69 E-value=92 Score=20.10 Aligned_cols=68 Identities=10% Similarity=0.097 Sum_probs=46.6
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCCCCC-C-EEEEeeCCeEEe
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAM-P-TFLLMREGAVVD 104 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~-P-~~~~~~~g~~~~ 104 (130)
.+++- .|.+|.--|+-|-....-|.+.-.. ..+.|+.+..+....+....++... + ++++.++|+...
T Consensus 5 ~~~p~---~vvlyDG~C~lC~~~vrfLi~~D~~-~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~~ 74 (137)
T COG3011 5 MKKPD---LVVLYDGVCPLCDGWVRFLIRRDQG-GRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLLV 74 (137)
T ss_pred CCCCC---EEEEECCcchhHHHHHHHHHHhccC-CcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceEe
Confidence 45666 7889999999998755554443211 3599988888888778777776533 3 566667776543
No 323
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=41.36 E-value=82 Score=25.72 Aligned_cols=97 Identities=15% Similarity=0.219 Sum_probs=62.3
Q ss_pred ChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhh----------hHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCC
Q 032978 19 SVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAM----------NPLFEELASAYPDVLFLSVDVDDVKDVASKLEV 88 (130)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~----------~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v 88 (130)
+++-|++.+..+. .++.- +|.-|-+|..++-.. +-.+-+++.+..-..+.++- |-+|.+++.
T Consensus 47 ~pe~W~~~i~k~k-~~Gln---~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl~~~~GLyv~LRiG----PyIcaEw~~ 118 (649)
T KOG0496|consen 47 TPEMWPDLIKKAK-AGGLN---VIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKLIHKAGLYVILRIG----PYICAEWNF 118 (649)
T ss_pred ChhhhHHHHHHHH-hcCCc---eeeeeeecccccCCCCcccccchhHHHHHHHHHHHCCeEEEecCC----CeEEecccC
Confidence 5677888777764 56677 788888888766221 12333444443325444444 778889999
Q ss_pred CCCCEEEEeeCCeEEeeEecCCHHHHHHHHHHHhh
Q 032978 89 KAMPTFLLMREGAVVDKLVGANPEEIRKRIDSFVQ 123 (130)
Q Consensus 89 ~~~P~~~~~~~g~~~~~~~g~~~~~l~~~i~~~~~ 123 (130)
.++|..+-+..|-........-..+++.|.++++.
T Consensus 119 GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~ 153 (649)
T KOG0496|consen 119 GGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVP 153 (649)
T ss_pred CCcchhhhhCCceEEecCChHHHHHHHHHHHHHHH
Confidence 99996666666666665544445677777776654
No 324
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=41.28 E-value=1e+02 Score=23.00 Aligned_cols=98 Identities=14% Similarity=0.168 Sum_probs=49.4
Q ss_pred cCCCeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC-CCeEEEEEeccCcHhHHHhcCC
Q 032978 10 NKSRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY-PDVLFLSVDVDDVKDVASKLEV 88 (130)
Q Consensus 10 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~-~~v~~~~vd~~~~~~~~~~~~v 88 (130)
.+.++.++.+.++++..... +.+.+ +.+|-....+.-.- +.+++.-+ .+..|..- .. ++.....-
T Consensus 106 ~s~~i~Ef~sl~~l~n~~~p---~K~~v---IgyF~~kdspey~~----~~kva~~lr~dc~f~V~-~g---D~~~~~~~ 171 (375)
T KOG0912|consen 106 LSDPINEFESLDQLQNLDIP---SKRTV---IGYFPSKDSPEYDN----LRKVASLLRDDCVFLVG-FG---DLLKPHEP 171 (375)
T ss_pred hccHHHHHHhHHHHHhhhcc---ccceE---EEEeccCCCchHHH----HHHHHHHHhhccEEEee-cc---ccccCCCC
Confidence 34456666666676665542 23444 66666676666543 44444433 23433322 11 11122223
Q ss_pred CCCCEEEEeeCCeEE-eeEecC--CHHHHHHHHHHH
Q 032978 89 KAMPTFLLMREGAVV-DKLVGA--NPEEIRKRIDSF 121 (130)
Q Consensus 89 ~~~P~~~~~~~g~~~-~~~~g~--~~~~l~~~i~~~ 121 (130)
.+.+.+++-.+.... ..+.|. +.+.+.+||++-
T Consensus 172 ~~~~~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dK 207 (375)
T KOG0912|consen 172 PGKNILVFDPDHSEPNHEFLGSMTNFDELKQWIQDK 207 (375)
T ss_pred CCCceEEeCCCcCCcCcccccccccHHHHHHHHHhc
Confidence 344433333332222 246666 889999999865
No 325
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=40.29 E-value=36 Score=23.40 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=20.2
Q ss_pred cCcHhHHHhcCCCCCCEEEEeeCCeEE
Q 032978 77 DDVKDVASKLEVKAMPTFLLMREGAVV 103 (130)
Q Consensus 77 ~~~~~~~~~~~v~~~P~~~~~~~g~~~ 103 (130)
+..+.+.++|+++++|.++. .+|+.+
T Consensus 172 dQ~g~Lt~rF~I~~VPavV~-q~g~~l 197 (202)
T TIGR02743 172 DQHGKLTQKFGIKHVPARVS-QEGLRL 197 (202)
T ss_pred cCCchHhhccCceeeceEEE-ecCCEE
Confidence 55667899999999999775 556554
No 326
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=40.26 E-value=1.4e+02 Score=21.35 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=25.9
Q ss_pred hHHHhcCCCCCC--EEEEe-eCCeEEeeEecC-CHHHHHHHHHH
Q 032978 81 DVASKLEVKAMP--TFLLM-REGAVVDKLVGA-NPEEIRKRIDS 120 (130)
Q Consensus 81 ~~~~~~~v~~~P--~~~~~-~~g~~~~~~~g~-~~~~l~~~i~~ 120 (130)
.+.+++++...- .++++ .+|++.....|. ++++++...+.
T Consensus 205 ~iRe~Lgi~N~~~GYvyLVD~~grIRWagsG~At~~E~~~L~k~ 248 (252)
T PF05176_consen 205 DIREALGINNSYVGYVYLVDPNGRIRWAGSGPATPEELESLWKC 248 (252)
T ss_pred HHHHHhCCCCCCcCeEEEECCCCeEEeCccCCCCHHHHHHHHHH
Confidence 455666766443 33333 778888887788 78887766554
No 327
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=38.51 E-value=45 Score=20.46 Aligned_cols=17 Identities=24% Similarity=0.591 Sum_probs=14.1
Q ss_pred HhHHHhcCCCCCCEEEE
Q 032978 80 KDVASKLEVKAMPTFLL 96 (130)
Q Consensus 80 ~~~~~~~~v~~~P~~~~ 96 (130)
.+++++++++++|.++-
T Consensus 83 ddLa~rL~l~hYPvLit 99 (105)
T TIGR03765 83 DDLAERLGLRHYPVLIT 99 (105)
T ss_pred HHHHHHhCCCcccEEEe
Confidence 37889999999998654
No 328
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=38.47 E-value=69 Score=17.48 Aligned_cols=51 Identities=14% Similarity=0.066 Sum_probs=31.2
Q ss_pred EEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEecc---CcHhHHHhcCCCCCCEEEE
Q 032978 43 HFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVD---DVKDVASKLEVKAMPTFLL 96 (130)
Q Consensus 43 ~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~---~~~~~~~~~~v~~~P~~~~ 96 (130)
.|+.+.|+.|.+..-.++...- .+.+..+|.. ..+++.+.-....+|++..
T Consensus 3 Ly~~~~~~~~~~~~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~ 56 (75)
T cd03044 3 LYTYPGNPRSLKILAAAKYNGL---DVEIVDFQPGKENKTPEFLKKFPLGKVPAFEG 56 (75)
T ss_pred EecCCCCccHHHHHHHHHHcCC---ceEEEecccccccCCHHHHHhCCCCCCCEEEc
Confidence 4667778888877666665422 2555556654 2344444445678999754
No 329
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=38.44 E-value=12 Score=24.18 Aligned_cols=14 Identities=14% Similarity=0.116 Sum_probs=11.9
Q ss_pred CChhhhhhhHHHHH
Q 032978 48 WCMPSVAMNPLFEE 61 (130)
Q Consensus 48 ~C~~C~~~~~~l~~ 61 (130)
.||+|++..|.|.-
T Consensus 11 ~CPhCRQ~ipALtL 24 (163)
T TIGR02652 11 RCPHCRQNIPALTL 24 (163)
T ss_pred cCchhhcccchhee
Confidence 59999999998753
No 330
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=38.18 E-value=42 Score=22.52 Aligned_cols=57 Identities=25% Similarity=0.236 Sum_probs=36.8
Q ss_pred hcCCCeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEE
Q 032978 9 QNKSRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFL 72 (130)
Q Consensus 9 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~ 72 (130)
.+.++...+ +..++-+++..+ ...|+ ||+|=...-.-=-.=...++.++. ++++.++
T Consensus 30 ~S~GNPT~l-sG~elV~lIk~a--~~DPV---~VMfDD~G~~g~G~GE~Al~~v~~-h~~IeVL 86 (180)
T PF14097_consen 30 QSAGNPTPL-SGEELVELIKQA--PHDPV---LVMFDDKGFIGEGPGEQALEYVAN-HPDIEVL 86 (180)
T ss_pred ccCCCCCcC-CHHHHHHHHHhC--CCCCE---EEEEeCCCCCCCCccHHHHHHHHc-CCCceEE
Confidence 345666777 888999999998 78999 999976654433333344555543 3444443
No 331
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=38.13 E-value=12 Score=24.16 Aligned_cols=14 Identities=14% Similarity=0.128 Sum_probs=11.9
Q ss_pred CChhhhhhhHHHHH
Q 032978 48 WCMPSVAMNPLFEE 61 (130)
Q Consensus 48 ~C~~C~~~~~~l~~ 61 (130)
.||+|++..|.|.-
T Consensus 8 ~CPhCRq~ipALtL 21 (161)
T PF09654_consen 8 QCPHCRQTIPALTL 21 (161)
T ss_pred cCchhhcccchhee
Confidence 59999999998754
No 332
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=37.88 E-value=1.1e+02 Score=19.68 Aligned_cols=40 Identities=15% Similarity=0.349 Sum_probs=23.3
Q ss_pred CCeEEecCh--hhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhh
Q 032978 12 SRVVKVDSV--ESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVA 54 (130)
Q Consensus 12 ~~v~~i~~~--~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~ 54 (130)
+.+.++.+. +.+...+... .|-.+.+.-|.||.- |+.|++
T Consensus 100 G~v~e~~~~~i~~~~~~~~~~--~Gf~i~~~~l~~~G~-C~~C~~ 141 (145)
T COG0735 100 GKVIEFEDDEIEALQEEIAKK--LGFKLKDHTLEIYGI-CPDCQA 141 (145)
T ss_pred CCEEEecchhHHHHHHHHHHh--cCCeeeeeEEEEEEE-CcchHh
Confidence 467777444 2344444433 344444557778877 888865
No 333
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=37.43 E-value=71 Score=17.28 Aligned_cols=51 Identities=12% Similarity=0.091 Sum_probs=30.1
Q ss_pred EEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcC-C-CCCCEEEE
Q 032978 43 HFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLE-V-KAMPTFLL 96 (130)
Q Consensus 43 ~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~-v-~~~P~~~~ 96 (130)
.++.+.|+.|.+..-.+....-. .....++....+....+.+ . ..+|++..
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~gl~---~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~ 55 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKGVP---YEYVEEDLGNKSELLLASNPVHKKIPVLLH 55 (74)
T ss_pred EEECCCCchHHHHHHHHHHcCCC---CEEEEeCcccCCHHHHHhCCCCCCCCEEEE
Confidence 45677899999888877776433 3333455433222223343 3 58998753
No 334
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=37.31 E-value=1.2e+02 Score=21.22 Aligned_cols=49 Identities=20% Similarity=0.154 Sum_probs=32.6
Q ss_pred ChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEecc
Q 032978 19 SVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVD 77 (130)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~ 77 (130)
+.+.+.+.+.....++ +- +|.. ....+.+.+.+.+++||++.|+.+|..
T Consensus 42 ~~~~~~~~i~~~~~~g-~d---lIi~------~g~~~~~~~~~vA~~~p~~~F~~~d~~ 90 (258)
T cd06353 42 EGADAERVLRELAAQG-YD---LIFG------TSFGFMDAALKVAKEYPDVKFEHCSGY 90 (258)
T ss_pred chHhHHHHHHHHHHcC-CC---EEEE------CchhhhHHHHHHHHHCCCCEEEECCCC
Confidence 3455666666543233 33 3322 455777889999999999999998753
No 335
>PRK10387 glutaredoxin 2; Provisional
Probab=36.81 E-value=1.2e+02 Score=20.07 Aligned_cols=55 Identities=16% Similarity=0.177 Sum_probs=29.4
Q ss_pred EEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCCCCCCEEEEeeCCeE
Q 032978 44 FTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAV 102 (130)
Q Consensus 44 f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~ 102 (130)
++.+.|++|.+..-.++...-. .....++.........-.....+|+++.. +|..
T Consensus 4 y~~~~sp~~~kv~~~L~~~gi~---y~~~~~~~~~~~~~~~~~p~~~VPvL~~~-~g~~ 58 (210)
T PRK10387 4 YIYDHCPFCVKARMIFGLKNIP---VELIVLANDDEATPIRMIGQKQVPILQKD-DGSY 58 (210)
T ss_pred EeCCCCchHHHHHHHHHHcCCC---eEEEEcCCCchhhHHHhcCCcccceEEec-CCeE
Confidence 5667799999877776665332 23333443322211222234578987543 4433
No 336
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=36.72 E-value=1.5e+02 Score=20.87 Aligned_cols=53 Identities=21% Similarity=0.281 Sum_probs=32.6
Q ss_pred CCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcC-CCCCCEE-EEeeCCeEEe
Q 032978 47 IWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLE-VKAMPTF-LLMREGAVVD 104 (130)
Q Consensus 47 ~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~-v~~~P~~-~~~~~g~~~~ 104 (130)
|-|+.+++....|+.+ ++.|...|+..+.++.+-.. ...+||| .+|-+|+.+.
T Consensus 152 P~CGFS~~~v~iL~~~-----nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFiG 206 (227)
T KOG0911|consen 152 PKCGFSRQLVGILQSH-----NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFIG 206 (227)
T ss_pred ccccccHHHHHHHHHc-----CCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEecc
Confidence 3455555555555443 67788899988888766443 3345652 3556786665
No 337
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=36.70 E-value=1.7e+02 Score=21.41 Aligned_cols=58 Identities=17% Similarity=0.272 Sum_probs=32.9
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhc----CCCCCCEEEEeeC
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKL----EVKAMPTFLLMRE 99 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~----~v~~~P~~~~~~~ 99 (130)
-|+|.-|- ..--.+...+.++-++..+|.-+.+|+-...++..++ .-+++|.+++...
T Consensus 122 ~vy~qPp~-~~~p~IKE~vR~~I~~A~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiLLD~ 183 (284)
T PF07894_consen 122 TVYFQPPK-DGQPHIKEVVRRMIQQAQKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYILLDE 183 (284)
T ss_pred EEEeCCCC-CCCCCHHHHHHHHHHHhcceeEEEeeccccHHHHHHHHHHHHhcCCcEEEEech
Confidence 55555532 2222233444444444456888888876666665543 4678888877754
No 338
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=36.57 E-value=1.1e+02 Score=19.10 Aligned_cols=65 Identities=11% Similarity=0.281 Sum_probs=40.1
Q ss_pred hhhHHHHHHHHhCCCeEEEEEec---cCcHhHHHhcCCCCCCEEEEeeCCeEEeeEecCCHHHHHHHHHHHhh
Q 032978 54 AMNPLFEELASAYPDVLFLSVDV---DDVKDVASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDSFVQ 123 (130)
Q Consensus 54 ~~~~~l~~l~~~~~~v~~~~vd~---~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~~i~~~~~ 123 (130)
.+...|+++... +++-++.|.- +.-+++..+|. ..+|+++.+++.+ .. .....+.+.+.++.+.+
T Consensus 47 ei~~~~~~~l~~-~digIIlIte~~a~~i~~~I~~~~-~~~PaIieIP~k~-~~--y~~~~d~i~~~~~~~~~ 114 (115)
T TIGR01101 47 EIEDCFNRFLKR-DDIAIILINQHIAEMIRHAVDAHT-RSIPAVLEIPSKD-HP--YDASKDSILRRARGMFN 114 (115)
T ss_pred HHHHHHHHHhhc-CCeEEEEEcHHHHHHhHHHHHhcC-CcCCEEEEECCCC-CC--CCCcccHHHHHHHHHcC
Confidence 344555553222 4677777763 34566777888 8999999998632 11 12245777777776643
No 339
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=36.26 E-value=93 Score=23.07 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=31.9
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhC--CCeEEEEEec
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDV 76 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~ 76 (130)
.|||+ |+.|-...-+.++.+...+++++++. +++.|+.+..
T Consensus 157 dGKPv---~~Iy~p~~~pd~~~~~~~wr~~a~~~G~~giyii~~~~ 199 (345)
T PF14307_consen 157 DGKPV---FLIYRPGDIPDIKEMIERWREEAKEAGLPGIYIIAVQG 199 (345)
T ss_pred CCEEE---EEEECcccccCHHHHHHHHHHHHHHcCCCceEEEEEec
Confidence 67888 77666655688899999999999886 5677777753
No 340
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=35.70 E-value=65 Score=22.26 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=27.8
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEE
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSV 74 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~v 74 (130)
|.+++.|-|+-|--+.|.++.++... ++.|...
T Consensus 4 lhYifDPmCgWCyGa~Pll~~l~~~~-gl~~~L~ 36 (212)
T COG3531 4 LHYIFDPMCGWCYGAAPLLEALSAQP-GLEVVLH 36 (212)
T ss_pred eEEecCcchhhhhCccHHHHHHHhcC-CceEEEe
Confidence 78999999999999999999998763 5655554
No 341
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=34.38 E-value=1.4e+02 Score=19.82 Aligned_cols=28 Identities=25% Similarity=0.471 Sum_probs=20.5
Q ss_pred EEEe-eCCeEEeeEecC-CHHHHHHHHHHH
Q 032978 94 FLLM-REGAVVDKLVGA-NPEEIRKRIDSF 121 (130)
Q Consensus 94 ~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~ 121 (130)
++++ ++|+......|. +++++.+.|.-+
T Consensus 128 iiVlDK~G~V~F~k~G~Ls~~Ev~qVi~Ll 157 (160)
T PF09695_consen 128 IIVLDKQGKVQFVKEGALSPAEVQQVIALL 157 (160)
T ss_pred EEEEcCCccEEEEECCCCCHHHHHHHHHHH
Confidence 3333 888888888888 888888877643
No 342
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=34.06 E-value=83 Score=17.09 Aligned_cols=50 Identities=10% Similarity=0.114 Sum_probs=31.3
Q ss_pred EEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccC----cHhHHHhcCCCCCCEEE
Q 032978 43 HFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD----VKDVASKLEVKAMPTFL 95 (130)
Q Consensus 43 ~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~----~~~~~~~~~v~~~P~~~ 95 (130)
.|+.+.++.|+...-.++...-. ..+..++... .+++.+......+|++.
T Consensus 3 ly~~~~s~~~~~v~~~l~~~g~~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~ 56 (76)
T cd03050 3 LYYDLMSQPSRAVYIFLKLNKIP---FEECPIDLRKGEQLTPEFKKINPFGKVPAIV 56 (76)
T ss_pred EeeCCCChhHHHHHHHHHHcCCC---cEEEEecCCCCCcCCHHHHHhCcCCCCCEEE
Confidence 46778899998887766665433 3444455432 23455555667899875
No 343
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=33.77 E-value=46 Score=26.76 Aligned_cols=71 Identities=17% Similarity=0.231 Sum_probs=46.2
Q ss_pred hhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHH-H--HHHHHhC-CCeEEEEEeccCcHhHHH--------hcC
Q 032978 20 VESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPL-F--EELASAY-PDVLFLSVDVDDVKDVAS--------KLE 87 (130)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~-l--~~l~~~~-~~v~~~~vd~~~~~~~~~--------~~~ 87 (130)
.+.|+++-+ +++++ ++-..-+.|--|..|... | ++.++.. .+.+-+.||.++.|++-+ ..+
T Consensus 102 qeaf~kar~----enkpi---fLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg 174 (786)
T KOG2244|consen 102 QEAFNKARA----ENKPI---FLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSG 174 (786)
T ss_pred HHHHHHHHh----cCCCE---EEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccC
Confidence 344555444 78999 999999999999877652 1 2233322 345666677777776544 346
Q ss_pred CCCCCEEEEe
Q 032978 88 VKAMPTFLLM 97 (130)
Q Consensus 88 v~~~P~~~~~ 97 (130)
-.+.|.-++.
T Consensus 175 ~GGWPmsV~L 184 (786)
T KOG2244|consen 175 GGGWPMSVFL 184 (786)
T ss_pred CCCCceeEEe
Confidence 6788876665
No 344
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=33.19 E-value=1.3e+02 Score=20.39 Aligned_cols=30 Identities=27% Similarity=0.546 Sum_probs=22.7
Q ss_pred EEEEeeCCeEEeeEecC-CHHHHHHHHHHHhhh
Q 032978 93 TFLLMREGAVVDKLVGA-NPEEIRKRIDSFVQS 124 (130)
Q Consensus 93 ~~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~ 124 (130)
++++|+.||++-. |. +.+++...+++++..
T Consensus 55 a~LIF~SGK~VcT--GaKs~ed~~~av~~~~~~ 85 (185)
T COG2101 55 AALIFRSGKVVCT--GAKSVEDVHRAVKKLAKK 85 (185)
T ss_pred eEEEEecCcEEEe--ccCcHHHHHHHHHHHHHH
Confidence 6788899998865 66 777777777776543
No 345
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=33.04 E-value=1.9e+02 Score=21.00 Aligned_cols=77 Identities=19% Similarity=0.298 Sum_probs=46.4
Q ss_pred eEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEec-cCcH----hHHHhcCCCCCCEEEE----------eeCCeEEeeE
Q 032978 42 VHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDV-DDVK----DVASKLEVKAMPTFLL----------MREGAVVDKL 106 (130)
Q Consensus 42 v~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~-~~~~----~~~~~~~v~~~P~~~~----------~~~g~~~~~~ 106 (130)
+.++.+.|..-..-...+.+|+.+. ++-++.-+. +.|. ++++..+ .|++.+ +++.+.+.-.
T Consensus 185 ~~~~nTIC~AT~~RQ~a~~~la~~v-D~miVVGg~nSsNT~rL~ei~~~~~---~~t~~Ie~~~el~~~~l~~~~~VGiT 260 (280)
T TIGR00216 185 VPVFNTICYATQNRQDAVKELAPEV-DLMIVIGGKNSSNTTRLYEIAEEHG---PPSYLIETAEELPEEWLKGVKVVGIT 260 (280)
T ss_pred CCCCCCcccccHHHHHHHHHHHhhC-CEEEEECCCCCchHHHHHHHHHHhC---CCEEEECChHHCCHHHhCCCCEEEEE
Confidence 4567899999888888899998774 433333322 2222 3455543 566554 2334456666
Q ss_pred ecC-CHHHHHHHHHHHh
Q 032978 107 VGA-NPEEIRKRIDSFV 122 (130)
Q Consensus 107 ~g~-~~~~l~~~i~~~~ 122 (130)
.|. +++.+.+-+-..+
T Consensus 261 AGASTP~~li~eVi~~l 277 (280)
T TIGR00216 261 AGASTPDWIIEEVIRKI 277 (280)
T ss_pred ecCCCCHHHHHHHHHHH
Confidence 677 6776666655554
No 346
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=32.85 E-value=1.3e+02 Score=18.80 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=12.5
Q ss_pred HHhcCCCCCCEEEEe
Q 032978 83 ASKLEVKAMPTFLLM 97 (130)
Q Consensus 83 ~~~~~v~~~P~~~~~ 97 (130)
+-.|||+.+|.++|.
T Consensus 76 Aw~lgi~k~PAVVfD 90 (114)
T PF07511_consen 76 AWSLGITKYPAVVFD 90 (114)
T ss_pred HHHhCccccCEEEEc
Confidence 447899999998885
No 347
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=31.48 E-value=63 Score=22.39 Aligned_cols=27 Identities=11% Similarity=0.261 Sum_probs=20.6
Q ss_pred cCcHhHHHhcCCCCCCEEEEe-eCCeEE
Q 032978 77 DDVKDVASKLEVKAMPTFLLM-REGAVV 103 (130)
Q Consensus 77 ~~~~~~~~~~~v~~~P~~~~~-~~g~~~ 103 (130)
+....+.++|+++++|.++.- .+|+.+
T Consensus 170 dQ~G~Lt~rF~I~~VPAvV~~~q~G~~l 197 (209)
T PRK13738 170 DQNGVLCQRFGIDQVPARVSAVPGGRFL 197 (209)
T ss_pred cCcchHHHhcCCeeeceEEEEcCCCCEE
Confidence 455678999999999997762 566654
No 348
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=31.44 E-value=2.6e+02 Score=22.04 Aligned_cols=53 Identities=26% Similarity=0.313 Sum_probs=30.0
Q ss_pred EEeEEEcCCC-hhhhhhhHHHHHHHHhCCC--eEEEEEe-ccCcHhHHHhcCCCCCC
Q 032978 40 VVVHFTAIWC-MPSVAMNPLFEELASAYPD--VLFLSVD-VDDVKDVASKLEVKAMP 92 (130)
Q Consensus 40 ~vv~f~~~~C-~~C~~~~~~l~~l~~~~~~--v~~~~vd-~~~~~~~~~~~~v~~~P 92 (130)
+||.|+.+.- ..=......+.++..+++. +.++.+. ..-....+-+.++...|
T Consensus 284 ~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~~~~fsr~~~Ld~g~~~~~ 340 (499)
T PF05679_consen 284 TVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISVKTGEFSRGAALDVGAKKFP 340 (499)
T ss_pred EEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEecCCCccHHHHHHhhcccCC
Confidence 3888887433 3333456677888888854 6666665 22233333344555444
No 349
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=30.92 E-value=1.3e+02 Score=18.20 Aligned_cols=21 Identities=10% Similarity=0.055 Sum_probs=15.8
Q ss_pred EeEEEcCCChhhhhh-hHHHHH
Q 032978 41 VVHFTAIWCMPSVAM-NPLFEE 61 (130)
Q Consensus 41 vv~f~~~~C~~C~~~-~~~l~~ 61 (130)
|-.||-+-||.|+++ ...|..
T Consensus 3 v~vyyESlCPd~~~fi~~~L~p 24 (108)
T PF03227_consen 3 VEVYYESLCPDCRRFITNQLFP 24 (108)
T ss_pred EEEEEEecCHhHHHHHHHHHHH
Confidence 456899999999887 445554
No 350
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=30.73 E-value=1.9e+02 Score=20.17 Aligned_cols=32 Identities=13% Similarity=0.021 Sum_probs=22.6
Q ss_pred cCCChhhhhhhHHHHHHHHhC--CCeEEEEEecc
Q 032978 46 AIWCMPSVAMNPLFEELASAY--PDVLFLSVDVD 77 (130)
Q Consensus 46 ~~~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~ 77 (130)
...|+.|-.+...+.....-+ .++.|+.|.-.
T Consensus 82 ~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSra 115 (211)
T PF05988_consen 82 DEGCPGCSFWADHIDGALRHLHARDTTFAVVSRA 115 (211)
T ss_pred CCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCC
Confidence 356999999999884433333 46999888743
No 351
>PRK09702 PTS system arbutin-specific transporter subunit IIB; Provisional
Probab=30.44 E-value=1.5e+02 Score=19.60 Aligned_cols=31 Identities=23% Similarity=0.541 Sum_probs=24.6
Q ss_pred eCCeEEeeEecCCHHHHHHHHHHHhhhhccc
Q 032978 98 REGAVVDKLVGANPEEIRKRIDSFVQSIRVY 128 (130)
Q Consensus 98 ~~g~~~~~~~g~~~~~l~~~i~~~~~~~~~~ 128 (130)
..|+.+.-..|.+.+.+.+.++++++..+.+
T Consensus 122 ~~g~~vQIIiG~~v~~i~~~i~~~l~~~~~~ 152 (161)
T PRK09702 122 RSGDAIQVIIGLHVSQLREQLDSLINSHQSA 152 (161)
T ss_pred EeCCeEEEEECCCHHHHHHHHHHHHcccccc
Confidence 3457888888999999999999998765544
No 352
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=30.30 E-value=40 Score=23.80 Aligned_cols=51 Identities=10% Similarity=0.089 Sum_probs=31.3
Q ss_pred CCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCC
Q 032978 33 QGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEV 88 (130)
Q Consensus 33 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v 88 (130)
.++++ + -+.+.++.++.+...++++........+..++.++-..+..+||+
T Consensus 220 ~g~pv---~--~~~p~s~~a~~~~~la~ell~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (275)
T TIGR01287 220 RKMTV---I--EYDPESEQANEYRELAKKIYENTEFVIPTPLTMDELEEILMKFGI 270 (275)
T ss_pred cCCce---E--EeCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 55555 3 456778877777777777765543344444555555666666664
No 353
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=29.89 E-value=1.6e+02 Score=19.22 Aligned_cols=40 Identities=15% Similarity=0.081 Sum_probs=31.5
Q ss_pred CCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCC--CeEEEEEec
Q 032978 34 GCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYP--DVLFLSVDV 76 (130)
Q Consensus 34 ~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~--~v~~~~vd~ 76 (130)
+..+ .+.++++.++.|.-+...++.+++.|. +|.+-.++.
T Consensus 127 ~~~l---~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~ 168 (171)
T PF07700_consen 127 DNEL---TLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVEC 168 (171)
T ss_dssp TTEE---EEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred CCEE---EEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEecc
Confidence 4556 788899999999999999999999984 455555544
No 354
>PTZ00151 translationally controlled tumor-like protein; Provisional
Probab=29.39 E-value=67 Score=21.57 Aligned_cols=13 Identities=23% Similarity=0.738 Sum_probs=10.5
Q ss_pred CCCCEEEEeeCCe
Q 032978 89 KAMPTFLLMREGA 101 (130)
Q Consensus 89 ~~~P~~~~~~~g~ 101 (130)
..+|.+++|++|-
T Consensus 155 g~tP~~~f~KdGL 167 (172)
T PTZ00151 155 ELAPRFVYIKDGL 167 (172)
T ss_pred CcceEEEEEcccc
Confidence 3689999999884
No 355
>PF11317 DUF3119: Protein of unknown function (DUF3119); InterPro: IPR021467 This family of proteins has no known function.
Probab=29.08 E-value=1.4e+02 Score=18.73 Aligned_cols=34 Identities=15% Similarity=0.399 Sum_probs=27.0
Q ss_pred CCCCEEEEeeCCeEEeeEecC-CHHHHHHHHHHHh
Q 032978 89 KAMPTFLLMREGAVVDKLVGA-NPEEIRKRIDSFV 122 (130)
Q Consensus 89 ~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 122 (130)
..+|.+++|++-+-++..--. |..+|.+.+++..
T Consensus 81 p~~PiL~YFkE~qsiHFlPiiFd~~~L~~~l~~r~ 115 (116)
T PF11317_consen 81 PGFPILFYFKETQSIHFLPIIFDPKQLREQLEERC 115 (116)
T ss_pred CCCCEEEEEecCCcceeeeeecCHHHHHHHHHHhC
Confidence 478999999988888876655 8888888887653
No 356
>KOG4079 consensus Putative mitochondrial ribosomal protein mRpS25 [Translation, ribosomal structure and biogenesis]
Probab=28.50 E-value=90 Score=20.23 Aligned_cols=35 Identities=26% Similarity=0.259 Sum_probs=22.8
Q ss_pred CCEEEEe-eCCeEE-eeEecCCHHHHHHHHHHHhhhh
Q 032978 91 MPTFLLM-REGAVV-DKLVGANPEEIRKRIDSFVQSI 125 (130)
Q Consensus 91 ~P~~~~~-~~g~~~-~~~~g~~~~~l~~~i~~~~~~~ 125 (130)
.|...+| .+|+.+ -...|.+.++|++.+.+.+++.
T Consensus 74 sPF~R~YlddGr~vL~Dld~~~r~eI~~hl~K~lGKt 110 (169)
T KOG4079|consen 74 SPFARAYLDDGREVLFDLDGMKREEIEKHLAKTLGKT 110 (169)
T ss_pred ChHHHheecCcceEEEEcccccHHHHHHHHHHHhCcc
Confidence 4444444 566655 4444668899999998887654
No 357
>PHA02151 hypothetical protein
Probab=28.43 E-value=34 Score=22.68 Aligned_cols=10 Identities=50% Similarity=1.198 Sum_probs=8.8
Q ss_pred EeEEEcCCCh
Q 032978 41 VVHFTAIWCM 50 (130)
Q Consensus 41 vv~f~~~~C~ 50 (130)
+|.||..||.
T Consensus 207 ~v~fy~kwct 216 (217)
T PHA02151 207 YVHFYKKWCT 216 (217)
T ss_pred EEEEehhhcc
Confidence 7899999995
No 358
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=28.28 E-value=1.7e+02 Score=19.60 Aligned_cols=40 Identities=20% Similarity=0.069 Sum_probs=29.5
Q ss_pred EeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcH
Q 032978 41 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVK 80 (130)
Q Consensus 41 vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~ 80 (130)
-+.+..++|+....+...++......+++.=+.|++...+
T Consensus 118 ~mtLt~p~c~~~~~L~~dV~~aL~~l~gV~~V~V~l~~dp 157 (174)
T TIGR03406 118 EMTLTAPGCGMGPVLVEDVEDKVLAVPNVDEVEVELVFDP 157 (174)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHhCCCceeEEEEEEecC
Confidence 6778889999888888877776666677776666665443
No 359
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=28.03 E-value=1.4e+02 Score=17.94 Aligned_cols=41 Identities=10% Similarity=0.040 Sum_probs=20.7
Q ss_pred eEEEcCCChhhhhhhHHHHHHHHhC--CCeEEEEEeccCcHhH
Q 032978 42 VHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDDVKDV 82 (130)
Q Consensus 42 v~f~~~~C~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~~~~~ 82 (130)
|.+|.+.+....+....=+++..-+ .++.|-.+|++.+++.
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~ 45 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEA 45 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHH
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHH
Confidence 3344444555555555444443322 4799999999986543
No 360
>cd00307 RuBisCO_small_like Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit and related proteins. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. This superfamily also contains specific proteins from cyanobacteria. CcmM plays a role in a CO2 concentrating mechanism, which cyanobacteria need to to overcome t
Probab=27.64 E-value=1.1e+02 Score=17.84 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=17.9
Q ss_pred Chhh--hhh---hHHHHHHHHhCCC--eEEEEEecc
Q 032978 49 CMPS--VAM---NPLFEELASAYPD--VLFLSVDVD 77 (130)
Q Consensus 49 C~~C--~~~---~~~l~~l~~~~~~--v~~~~vd~~ 77 (130)
|..| ... +..++.-.++||+ |.++.+|-.
T Consensus 36 ~f~~~~~~~~~Vl~el~~c~~~~p~~YVRlig~D~~ 71 (84)
T cd00307 36 CGPIEGRSEAQVLAALEACLAEHPGEYVRLIGIDPK 71 (84)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeCC
Confidence 5555 444 4445555567776 888877765
No 361
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=27.59 E-value=71 Score=17.17 Aligned_cols=50 Identities=8% Similarity=0.042 Sum_probs=26.7
Q ss_pred EEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCc--HhHHHhcCCCCCCEEEE
Q 032978 44 FTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDV--KDVASKLEVKAMPTFLL 96 (130)
Q Consensus 44 f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~--~~~~~~~~v~~~P~~~~ 96 (130)
++.+.|+.|....-.++...-. .....++..+. .++........+|++..
T Consensus 4 y~~~~~~~~~~v~~~l~~~gi~---~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~ 55 (72)
T cd03039 4 TYFNIRGRGEPIRLLLADAGVE---YEDVRITYEEWPELDLKPTLPFGQLPVLEI 55 (72)
T ss_pred EEEcCcchHHHHHHHHHHCCCC---cEEEEeCHHHhhhhhhccCCcCCCCCEEEE
Confidence 4456788888777666665433 33333444322 12222334557898753
No 362
>PF13120 DUF3974: Domain of unknown function (DUF3974)
Probab=27.47 E-value=42 Score=20.23 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=19.8
Q ss_pred EEcCCChhhhhhhHHHHHHHHhC
Q 032978 44 FTAIWCMPSVAMNPLFEELASAY 66 (130)
Q Consensus 44 f~~~~C~~C~~~~~~l~~l~~~~ 66 (130)
||-+|..+-++....+++++++-
T Consensus 32 ~ylswakpykrahesieklsnks 54 (126)
T PF13120_consen 32 FYLSWAKPYKRAHESIEKLSNKS 54 (126)
T ss_pred eeeeecChhhHHHhHHHHhcccC
Confidence 46789999999999999998763
No 363
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=26.87 E-value=1.4e+02 Score=17.38 Aligned_cols=21 Identities=10% Similarity=0.238 Sum_probs=17.8
Q ss_pred cCCCeEEecChhhHHHHHHHh
Q 032978 10 NKSRVVKVDSVESWETFVSQA 30 (130)
Q Consensus 10 ~~~~v~~i~~~~~~~~~~~~~ 30 (130)
+.+.+..|+++++|.+++..+
T Consensus 49 ~~gDLLPInNDdNf~kAlssa 69 (80)
T cd06403 49 PHGDLLPINNDDNFLKALSSA 69 (80)
T ss_pred CCCCEecccCcHHHHHHHHcC
Confidence 367799999999999999854
No 364
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=26.49 E-value=2.6e+02 Score=20.48 Aligned_cols=96 Identities=13% Similarity=0.016 Sum_probs=51.0
Q ss_pred ChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCC-C--eEEEEEec--c-CcHhHHHhcCC-CCC
Q 032978 19 SVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYP-D--VLFLSVDV--D-DVKDVASKLEV-KAM 91 (130)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~-~--v~~~~vd~--~-~~~~~~~~~~v-~~~ 91 (130)
+.+++..-+..- ..... .|..|+..|..=....|..+ ..+ . +-+...|- + ....+..+|.. .+.
T Consensus 61 Sa~~~~sDLe~l--~~~t~---~IR~Y~sDCn~le~v~pAa~----~~g~kv~lGiw~tdd~~~~~~~til~ay~~~~~~ 131 (305)
T COG5309 61 SADQVASDLELL--ASYTH---SIRTYGSDCNTLENVLPAAE----ASGFKVFLGIWPTDDIHDAVEKTILSAYLPYNGW 131 (305)
T ss_pred CHHHHHhHHHHh--ccCCc---eEEEeeccchhhhhhHHHHH----hcCceEEEEEeeccchhhhHHHHHHHHHhccCCC
Confidence 344554444433 45555 67888877765433333333 332 1 11222221 1 12245566654 467
Q ss_pred CEEEEeeCCeEEeeEecCCHHHHHHHHHHHhh
Q 032978 92 PTFLLMREGAVVDKLVGANPEEIRKRIDSFVQ 123 (130)
Q Consensus 92 P~~~~~~~g~~~~~~~g~~~~~l~~~i~~~~~ 123 (130)
|++..+-=|.+.-.....++.+|.+.|...-.
T Consensus 132 d~v~~v~VGnEal~r~~~tasql~~~I~~vrs 163 (305)
T COG5309 132 DDVTTVTVGNEALNRNDLTASQLIEYIDDVRS 163 (305)
T ss_pred CceEEEEechhhhhcCCCCHHHHHHHHHHHHH
Confidence 88777755655554445588899888887643
No 365
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=26.32 E-value=1.7e+02 Score=18.22 Aligned_cols=16 Identities=31% Similarity=0.480 Sum_probs=12.7
Q ss_pred HHhcCCCCCCEEEEee
Q 032978 83 ASKLEVKAMPTFLLMR 98 (130)
Q Consensus 83 ~~~~~v~~~P~~~~~~ 98 (130)
+-.|||+.+|.++|..
T Consensus 77 Aw~lGi~k~PAVV~D~ 92 (113)
T TIGR03757 77 AWQLGVTKIPAVVVDR 92 (113)
T ss_pred HHHcCCccCCEEEEcC
Confidence 3478999999988853
No 366
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=26.31 E-value=2.1e+02 Score=19.25 Aligned_cols=54 Identities=15% Similarity=0.100 Sum_probs=27.6
Q ss_pred EEcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCCCCCCEEEEeeCCe
Q 032978 44 FTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGA 101 (130)
Q Consensus 44 f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~ 101 (130)
++...||.|++..-.|....-.| ..+.++........+--....+|++.. .+|.
T Consensus 3 y~~~~sp~~~kvr~~L~~~gl~~---e~~~~~~~~~~~~~~~np~g~vP~l~~-~~g~ 56 (209)
T TIGR02182 3 YIYDHCPFCVRARMIFGLKNIPV---EKHVLLNDDEETPIRMIGAKQVPILQK-DDGR 56 (209)
T ss_pred ecCCCCChHHHHHHHHHHcCCCe---EEEECCCCcchhHHHhcCCCCcceEEe-eCCe
Confidence 55677999987776666553222 222222222222222223467898643 3454
No 367
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=26.07 E-value=2e+02 Score=19.24 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=20.2
Q ss_pred EEEEeeCCeEEeeEecC-CHHHHHHHHHHHh
Q 032978 93 TFLLMREGAVVDKLVGA-NPEEIRKRIDSFV 122 (130)
Q Consensus 93 ~~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 122 (130)
++++|.+||.+-. |. +.+++...++++.
T Consensus 49 t~lIF~SGKiviT--Gaks~e~a~~a~~~i~ 77 (174)
T cd04516 49 TALIFSSGKMVCT--GAKSEDDSKLAARKYA 77 (174)
T ss_pred EEEEECCCeEEEE--ecCCHHHHHHHHHHHH
Confidence 6788899998865 55 7777666666554
No 368
>PRK08351 DNA-directed RNA polymerase subunit E''; Validated
Probab=26.03 E-value=49 Score=18.15 Aligned_cols=40 Identities=25% Similarity=0.406 Sum_probs=26.4
Q ss_pred EcCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCCCCCC
Q 032978 45 TAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMP 92 (130)
Q Consensus 45 ~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P 92 (130)
....||.|.... +.+++.++.+ .+|-+ ..++++++++ ..|
T Consensus 14 ~~~~CP~Cgs~~-----~T~~W~G~vi-I~dPe-~S~IAk~l~i-~~p 53 (61)
T PRK08351 14 TEDRCPVCGSRD-----LSDEWFDLVI-IIDVE-NSRIAKKLGA-KVP 53 (61)
T ss_pred CCCcCCCCcCCc-----cccccccEEE-EeCCc-HhHHHHHhCC-CCC
Confidence 466799998743 6666766433 45555 4478999988 444
No 369
>KOG0833 consensus Cytidine deaminase [Nucleotide transport and metabolism]
Probab=25.99 E-value=39 Score=22.65 Aligned_cols=16 Identities=13% Similarity=0.025 Sum_probs=11.8
Q ss_pred cCCChhhhhhhHHHHH
Q 032978 46 AIWCMPSVAMNPLFEE 61 (130)
Q Consensus 46 ~~~C~~C~~~~~~l~~ 61 (130)
.+=|+.|++++..+..
T Consensus 102 ~tPCG~CRQfl~Ef~~ 117 (173)
T KOG0833|consen 102 TTPCGVCRQFLREFGN 117 (173)
T ss_pred CCCcHHHHHHHHHHhh
Confidence 3449999988877655
No 370
>PLN00062 TATA-box-binding protein; Provisional
Probab=25.98 E-value=1.9e+02 Score=19.44 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=21.1
Q ss_pred CEEEEeeCCeEEeeEecC-CHHHHHHHHHHHh
Q 032978 92 PTFLLMREGAVVDKLVGA-NPEEIRKRIDSFV 122 (130)
Q Consensus 92 P~~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 122 (130)
.++++|..||.+-. |. +.+++...++++.
T Consensus 48 ~t~lIF~SGKiviT--Gaks~e~a~~a~~~~~ 77 (179)
T PLN00062 48 TTALIFASGKMVCT--GAKSEHDSKLAARKYA 77 (179)
T ss_pred EEEEEECCCeEEEE--ecCCHHHHHHHHHHHH
Confidence 37888999999865 65 7777766666554
No 371
>PRK00394 transcription factor; Reviewed
Probab=25.48 E-value=1.9e+02 Score=19.42 Aligned_cols=30 Identities=27% Similarity=0.498 Sum_probs=22.5
Q ss_pred CEEEEeeCCeEEeeEecC-CHHHHHHHHHHHhh
Q 032978 92 PTFLLMREGAVVDKLVGA-NPEEIRKRIDSFVQ 123 (130)
Q Consensus 92 P~~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~ 123 (130)
.++.+|.+||.+-. |. +.+++...+++++.
T Consensus 47 ~t~lIf~sGKiv~t--Ga~S~~~a~~a~~~~~~ 77 (179)
T PRK00394 47 IAALIFRSGKVVCT--GAKSVEDLHEAVKIIIK 77 (179)
T ss_pred eEEEEEcCCcEEEE--ccCCHHHHHHHHHHHHH
Confidence 58889999998865 65 77777777766643
No 372
>PF02610 Arabinose_Isome: L-arabinose isomerase; InterPro: IPR003762 The Escherichia coli araBAD operon consists of three genes encoding three enzymes that convert L-arabinose to D-xylulose-5 phosphate. L-arabinose isomerase (AraA) 5.3.1.4 from EC catalyses the conversion of L-arabinose to L-ribulose as the first step in the pathway of L-arabinose utilization as a carbon source [].; GO: 0008733 L-arabinose isomerase activity, 0008152 metabolic process; PDB: 4F2D_A 2AJT_C 2HXG_C.
Probab=25.44 E-value=1.7e+02 Score=22.18 Aligned_cols=44 Identities=18% Similarity=0.008 Sum_probs=31.9
Q ss_pred ecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHH
Q 032978 17 VDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELA 63 (130)
Q Consensus 17 i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~ 63 (130)
+++.++..+...+++..+.+. .|..|-..-++.+...+.++.+.
T Consensus 54 ~~t~~~i~~~~~~an~~~~c~---gvi~wMhTfSpakmwI~gl~~l~ 97 (359)
T PF02610_consen 54 VTTPEEITRVCKEANADEDCD---GVITWMHTFSPAKMWIPGLQRLQ 97 (359)
T ss_dssp B-SHHHHHHHHHHHHH-TTEE---EEEEEESS---THHHHHHHHH--
T ss_pred cCCHHHHHHHHHHhhccCCcc---EEeehhhhhccHHHHHHHHHHhC
Confidence 667888998888886667888 88889888999999999998885
No 373
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=25.43 E-value=2e+02 Score=19.13 Aligned_cols=58 Identities=19% Similarity=0.271 Sum_probs=31.8
Q ss_pred HHHHHHhCCCeEEEEEeccCcHhHHHhcCCCCCCEEEEeeCCeEEeeEecC-CHHHHHHHHHHHh
Q 032978 59 FEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGA-NPEEIRKRIDSFV 122 (130)
Q Consensus 59 l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 122 (130)
|++++...++ ...+-+..+.+.-++.- .-.++.+|.+||.+-. |. +.+++...++++.
T Consensus 19 L~~la~~~~n---~~YePe~fpgli~R~~~-P~~t~lIf~sGKivit--Gaks~~~~~~a~~~~~ 77 (174)
T cd00652 19 LRKIALAARN---AEYNPKRFPGVIMRLRE-PKTTALIFSSGKMVIT--GAKSEEDAKLAARKYA 77 (174)
T ss_pred HHHHHhhCCC---cEECCCccceEEEEcCC-CcEEEEEECCCEEEEE--ecCCHHHHHHHHHHHH
Confidence 5555544433 22333344433333221 2347888999998875 65 6676666666554
No 374
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=25.23 E-value=2.1e+02 Score=19.13 Aligned_cols=30 Identities=23% Similarity=0.540 Sum_probs=22.6
Q ss_pred EEEEeeCCeEEeeEecC-CHHHHHHHHHHHhhh
Q 032978 93 TFLLMREGAVVDKLVGA-NPEEIRKRIDSFVQS 124 (130)
Q Consensus 93 ~~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~~ 124 (130)
++++|..|+.+-. |. +.+++...++.+...
T Consensus 140 ~~lIF~SGKvvit--Gaks~~~~~~a~~~i~~~ 170 (174)
T cd04518 140 VLLLFSSGKMVIT--GAKSEEDAKRAVEKLLSR 170 (174)
T ss_pred EEEEeCCCEEEEE--ecCCHHHHHHHHHHHHHH
Confidence 6777888988865 66 788888888777543
No 375
>KOG2868 consensus Decapping enzyme complex component DCP1 [Transcription; RNA processing and modification]
Probab=24.36 E-value=2e+02 Score=21.46 Aligned_cols=27 Identities=11% Similarity=0.301 Sum_probs=16.3
Q ss_pred hhhHHHHHHHHhCCCeEEEEEeccCcH
Q 032978 54 AMNPLFEELASAYPDVLFLSVDVDDVK 80 (130)
Q Consensus 54 ~~~~~l~~l~~~~~~v~~~~vd~~~~~ 80 (130)
+..|.++++...-+.+.||..|...+.
T Consensus 22 r~DP~ik~Ild~ashva~Y~fd~~~~e 48 (335)
T KOG2868|consen 22 RIDPYIKSILDVASHVALYTFDFGANE 48 (335)
T ss_pred hhCHHHHHHHhhccceeEEEeccccch
Confidence 444566666555566777777766543
No 376
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=24.00 E-value=2.7e+02 Score=19.71 Aligned_cols=49 Identities=20% Similarity=0.310 Sum_probs=33.7
Q ss_pred ChhhhhhhHHHHHHHHhCCC-eEEEEEeccCcHhHHHhcCCCCCCEEEEeeCCeEEee
Q 032978 49 CMPSVAMNPLFEELASAYPD-VLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDK 105 (130)
Q Consensus 49 C~~C~~~~~~l~~l~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~ 105 (130)
-.+|..+...++++++++.+ +.++--|+.- +..|. -.++.+++|+.+..
T Consensus 168 mkHsv~iMk~Lrrla~el~KtiviVlHDINf----AS~Ys----D~IVAlK~G~vv~~ 217 (252)
T COG4604 168 MKHSVQIMKILRRLADELGKTIVVVLHDINF----ASCYS----DHIVALKNGKVVKQ 217 (252)
T ss_pred hHHHHHHHHHHHHHHHHhCCeEEEEEecccH----HHhhh----hheeeecCCEEEec
Confidence 36899999999999999955 5555555532 22221 23577789988876
No 377
>PHA02091 hypothetical protein
Probab=23.61 E-value=73 Score=17.50 Aligned_cols=18 Identities=6% Similarity=0.025 Sum_probs=12.9
Q ss_pred EEeEEEcCC-----ChhhhhhhH
Q 032978 40 VVVHFTAIW-----CMPSVAMNP 57 (130)
Q Consensus 40 ~vv~f~~~~-----C~~C~~~~~ 57 (130)
|.+..|.|. |..|+++.+
T Consensus 47 w~lnvygp~~~~~i~~~~~~~fe 69 (72)
T PHA02091 47 WTLNVYGPLGKAQICRDQQKFFE 69 (72)
T ss_pred EEEEeecccchhhcchhHHhhhc
Confidence 589999874 777776543
No 378
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=23.47 E-value=3.2e+02 Score=20.45 Aligned_cols=95 Identities=17% Similarity=0.188 Sum_probs=49.0
Q ss_pred CCeEEecChhhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHH-HHHhCCCeEEEEEeccCcHhHHHhc-CCC
Q 032978 12 SRVVKVDSVESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEE-LASAYPDVLFLSVDVDDVKDVASKL-EVK 89 (130)
Q Consensus 12 ~~v~~i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~-l~~~~~~v~~~~vd~~~~~~~~~~~-~v~ 89 (130)
.++++..+.++....-..+ +..+. +|+|.+...|-- ..+.. .++++.-..|+. ...+++..+ ..+
T Consensus 133 ~aiI~pi~enQ~~fehlq~--Rhq~f---fVf~Gtge~PL~----d~fidAASe~~~~a~FfS----aseeVaPe~~~~k 199 (468)
T KOG4277|consen 133 AAIIEPINENQIEFEHLQA--RHQPF---FVFFGTGEGPLF----DAFIDAASEKFSVARFFS----ASEEVAPEENDAK 199 (468)
T ss_pred cceeeecChhHHHHHHHhh--ccCce---EEEEeCCCCcHH----HHHHHHhhhheeeeeeec----cccccCCcccchh
Confidence 3444443554444333333 67888 888776544432 22222 222222233332 223344444 355
Q ss_pred CCCEEEEeeCCeEEeeEecCCHHHHHHHHHH
Q 032978 90 AMPTFLLMREGAVVDKLVGANPEEIRKRIDS 120 (130)
Q Consensus 90 ~~P~~~~~~~g~~~~~~~g~~~~~l~~~i~~ 120 (130)
..|.+.+|++....-.. ..+.+.|.+||.+
T Consensus 200 empaV~VFKDetf~i~d-e~dd~dLseWinR 229 (468)
T KOG4277|consen 200 EMPAVAVFKDETFEIED-EGDDEDLSEWINR 229 (468)
T ss_pred hccceEEEccceeEEEe-cCchhHHHHHHhH
Confidence 78999999876433322 3356788888876
No 379
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=23.26 E-value=1.8e+02 Score=17.56 Aligned_cols=50 Identities=12% Similarity=0.131 Sum_probs=28.8
Q ss_pred EEeccCcHhHHHhcCCCCCCEEEEeeCCeEEeeEecCCHHHHHHHHHHHh
Q 032978 73 SVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDSFV 122 (130)
Q Consensus 73 ~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~~i~~~~ 122 (130)
.||+.....+...-+..+-+..+-+............+.++..+|++.+.
T Consensus 52 ~IdL~~~~~V~~~~~~~~~~~~f~I~tp~R~f~l~Aete~E~~~Wi~~l~ 101 (104)
T cd01236 52 TIDMNQCTDVVDAEARTGQKFSICILTPDKEHFIKAETKEEISWWLNMLM 101 (104)
T ss_pred EEEccceEEEeecccccCCccEEEEECCCceEEEEeCCHHHHHHHHHHHH
Confidence 35555444333322333334434443344556666779999999999874
No 380
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=23.23 E-value=1.7e+02 Score=19.61 Aligned_cols=27 Identities=7% Similarity=0.096 Sum_probs=14.4
Q ss_pred ecChhhHHHHHHHhhcCCCceEeEEeEEEc
Q 032978 17 VDSVESWETFVSQANNQGCPVRNVVVHFTA 46 (130)
Q Consensus 17 i~~~~~~~~~~~~~~~~~~~~~~~vv~f~~ 46 (130)
+.+.+++.+.+.++...+++. +|.+..
T Consensus 157 v~~~~el~~al~~al~~~gp~---vIev~~ 183 (193)
T cd03375 157 SGDIKQLKEIIKKAIQHKGFS---FVEVLS 183 (193)
T ss_pred cCCHHHHHHHHHHHHhcCCCE---EEEEEC
Confidence 445555555555554445555 555553
No 381
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=22.29 E-value=75 Score=17.08 Aligned_cols=16 Identities=0% Similarity=-0.039 Sum_probs=12.5
Q ss_pred CCChhhhhhhHHHHHH
Q 032978 47 IWCMPSVAMNPLFEEL 62 (130)
Q Consensus 47 ~~C~~C~~~~~~l~~l 62 (130)
++|+.|.+..-.++..
T Consensus 14 s~sp~~~~v~~~L~~~ 29 (72)
T cd03054 14 SLSPECLKVETYLRMA 29 (72)
T ss_pred CCCHHHHHHHHHHHhC
Confidence 5899998888777664
No 382
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=22.19 E-value=87 Score=17.06 Aligned_cols=14 Identities=21% Similarity=0.634 Sum_probs=11.6
Q ss_pred CCEEEEeeCCeEEe
Q 032978 91 MPTFLLMREGAVVD 104 (130)
Q Consensus 91 ~P~~~~~~~g~~~~ 104 (130)
.|++.+|++|+.+.
T Consensus 12 ~P~v~W~kdg~~l~ 25 (67)
T cd05863 12 PPEFQWYKDGKLIS 25 (67)
T ss_pred CCEEEEEECCEECc
Confidence 56889999998875
No 383
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.08 E-value=3e+02 Score=23.63 Aligned_cols=37 Identities=19% Similarity=0.370 Sum_probs=23.4
Q ss_pred CCCCEEEEe-eCCeEE----eeEecCCHHHHHHHHHHHhhhh
Q 032978 89 KAMPTFLLM-REGAVV----DKLVGANPEEIRKRIDSFVQSI 125 (130)
Q Consensus 89 ~~~P~~~~~-~~g~~~----~~~~g~~~~~l~~~i~~~~~~~ 125 (130)
..+|.+.++ .+|.+. ..+.|.+..+-.+.|-+.|...
T Consensus 286 h~Lp~i~i~d~dG~in~~~~~~~~Gl~r~eAR~kIv~~L~~~ 327 (877)
T COG0525 286 HNLPLINIIDEDGRINEEAAGEFAGLDRFEARKKIVEDLEEQ 327 (877)
T ss_pred CCCCceEEECCCCeeccCCccccCCCcHHHHHHHHHHHHHhC
Confidence 357876555 778776 3666777666666665555443
No 384
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=21.63 E-value=1.9e+02 Score=21.88 Aligned_cols=56 Identities=20% Similarity=0.396 Sum_probs=39.7
Q ss_pred EEcCCChhhhhhhHHHHHHHHhCC-CeEEEEEeccCcHhHHHhcCCCCCCEEEEeeCCeEEeeEe
Q 032978 44 FTAIWCMPSVAMNPLFEELASAYP-DVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLV 107 (130)
Q Consensus 44 f~~~~C~~C~~~~~~l~~l~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~ 107 (130)
|.+-+--.=..+..+|-+|.+++. .+.|+.-|.++.-.+..+ +.+.++|+.+...+
T Consensus 192 FSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~r--------IaimkdG~ivQ~Gt 248 (386)
T COG4175 192 FSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDR--------IAIMKDGEIVQVGT 248 (386)
T ss_pred hhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccce--------EEEecCCeEEEeCC
Confidence 444444455677888889988884 599999998887655443 45668888887644
No 385
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=21.51 E-value=2.2e+02 Score=17.85 Aligned_cols=55 Identities=16% Similarity=0.255 Sum_probs=34.6
Q ss_pred CCChhhhhhhHHHHHHHHh----C--CC--eEEEEEeccCcHhHHHhcCCCCCCEEEEeeCCeEEeeE
Q 032978 47 IWCMPSVAMNPLFEELASA----Y--PD--VLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKL 106 (130)
Q Consensus 47 ~~C~~C~~~~~~l~~l~~~----~--~~--v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~ 106 (130)
..|..|..-...|++..+. + -+ +.+-.+.++.. ++..++ -+.|++.+ ||+.+..+
T Consensus 13 ~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~-~~~~~~--~~S~~I~i--nG~piE~~ 75 (120)
T PF10865_consen 13 KTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEE-EFARQP--LESPTIRI--NGRPIEDL 75 (120)
T ss_pred CcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChH-HHhhcc--cCCCeeeE--CCEehhHh
Confidence 3799997777766665443 3 23 77777777664 566666 46677555 66665433
No 386
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.42 E-value=2.3e+02 Score=22.39 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=16.6
Q ss_pred hHHHHHHHHhCCCeEEEEEeccC
Q 032978 56 NPLFEELASAYPDVLFLSVDVDD 78 (130)
Q Consensus 56 ~~~l~~l~~~~~~v~~~~vd~~~ 78 (130)
....+.+.+.+|+..+..+|.+.
T Consensus 272 e~~~e~l~~~fp~~~v~~~d~d~ 294 (505)
T TIGR00595 272 EQVEEELAKLFPGARIARIDSDT 294 (505)
T ss_pred HHHHHHHHhhCCCCcEEEEeccc
Confidence 34456666777989999998764
No 387
>PF07895 DUF1673: Protein of unknown function (DUF1673); InterPro: IPR012874 This family contains hypothetical proteins of unknown function found in Methanosarcina acetivorans and Methanosarcina mazei.
Probab=21.22 E-value=29 Score=23.81 Aligned_cols=11 Identities=27% Similarity=0.712 Sum_probs=9.2
Q ss_pred CCChhhhhhhH
Q 032978 47 IWCMPSVAMNP 57 (130)
Q Consensus 47 ~~C~~C~~~~~ 57 (130)
-|||.|+++..
T Consensus 12 GWCPnaka~e~ 22 (205)
T PF07895_consen 12 GWCPNAKALET 22 (205)
T ss_pred CcCcCcCcccc
Confidence 59999988766
No 388
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.21 E-value=2.3e+02 Score=21.59 Aligned_cols=46 Identities=4% Similarity=0.122 Sum_probs=32.7
Q ss_pred HhHHHhcCCCCCCEEEEee-CCeEEeeEecC-----CHHHHHHHHHHHhhhh
Q 032978 80 KDVASKLEVKAMPTFLLMR-EGAVVDKLVGA-----NPEEIRKRIDSFVQSI 125 (130)
Q Consensus 80 ~~~~~~~~v~~~P~~~~~~-~g~~~~~~~g~-----~~~~l~~~i~~~~~~~ 125 (130)
.++++.++..+.|.++-+. +|+...+.... +.+.|+..|..+....
T Consensus 137 aqI~~d~g~~~~pVvFSWPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~~ 188 (377)
T COG4782 137 AQIVHDSGNDGVPVVFSWPSRGSLLGYNYDRESTNYSRPALERLLRYLATDK 188 (377)
T ss_pred HHHHhhcCCCcceEEEEcCCCCeeeecccchhhhhhhHHHHHHHHHHHHhCC
Confidence 4678889999999988884 56655543332 4678888888776544
No 389
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=21.05 E-value=3.5e+02 Score=19.91 Aligned_cols=97 Identities=14% Similarity=0.189 Sum_probs=52.4
Q ss_pred hhHHHHHHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCCeEEEEEec-cCcH----hHHHhcCCCCCCEEE
Q 032978 21 ESWETFVSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDV-DDVK----DVASKLEVKAMPTFL 95 (130)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~-~~~~----~~~~~~~v~~~P~~~ 95 (130)
+.|...+.....+..-+ .+.++.+.|..-..-.....+|+++. ++-++.-+. +.|. +++++++ .|++.
T Consensus 169 ~~~~~i~~~l~~~~~~~---~v~~~nTIC~aT~~RQ~a~~~La~~v-D~miVVGg~~SsNT~kL~~i~~~~~---~~t~~ 241 (298)
T PRK01045 169 DDTAEIIAALKERFPEI---QGPPKDDICYATQNRQEAVKELAPQA-DLVIVVGSKNSSNSNRLREVAEEAG---APAYL 241 (298)
T ss_pred HHHHHHHHHHHHhCcCc---ccCCCCCcchhhHHHHHHHHHHHhhC-CEEEEECCCCCccHHHHHHHHHHHC---CCEEE
Confidence 45555554442122223 33448899988888888888888764 433332222 2222 3455553 45544
Q ss_pred E----------eeCCeEEeeEecC-CHHHHHHHHHHHhhh
Q 032978 96 L----------MREGAVVDKLVGA-NPEEIRKRIDSFVQS 124 (130)
Q Consensus 96 ~----------~~~g~~~~~~~g~-~~~~l~~~i~~~~~~ 124 (130)
+ +++-+.+.-..|. +++.+.+-+-..+..
T Consensus 242 Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV~~~l~~ 281 (298)
T PRK01045 242 IDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEVIARLKE 281 (298)
T ss_pred ECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHH
Confidence 3 2333456666677 677666555555443
No 390
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=20.94 E-value=3.4e+02 Score=20.48 Aligned_cols=54 Identities=9% Similarity=0.086 Sum_probs=35.2
Q ss_pred cCCChhhhhhhHHHHHHHHhCCCeEEEEEeccCcHhHHHhcCCCCCCEEEEeeC
Q 032978 46 AIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMRE 99 (130)
Q Consensus 46 ~~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~ 99 (130)
...|-.+-.....++++..+...|.|+..|+.+...+.+-|....+=.++.|..
T Consensus 33 DNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~V~Hfa~ 86 (343)
T KOG1371|consen 33 DNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDAVMHFAA 86 (343)
T ss_pred ecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCceEEeehh
Confidence 344444433333334443333579999999999998888888777666777743
No 391
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=20.80 E-value=2.7e+02 Score=18.57 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=21.3
Q ss_pred CEEEEeeCCeEEeeEecC-CHHHHHHHHHHHhh
Q 032978 92 PTFLLMREGAVVDKLVGA-NPEEIRKRIDSFVQ 123 (130)
Q Consensus 92 P~~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~ 123 (130)
.++.+|.+||.+-. |. +.+++...+++++.
T Consensus 48 ~t~lIF~sGKiviT--Gaks~~~~~~a~~~~~~ 78 (174)
T cd04517 48 ATASVWSSGKITIT--GATSEEEAKQAARRAAR 78 (174)
T ss_pred EEEEEECCCeEEEE--ccCCHHHHHHHHHHHHH
Confidence 37888899998865 66 67777766665543
No 392
>smart00592 BRK domain in transcription and CHROMO domain helicases.
Probab=20.67 E-value=92 Score=15.85 Aligned_cols=24 Identities=4% Similarity=0.159 Sum_probs=18.2
Q ss_pred eCCeEEeeEecCCHHHHHHHHHHH
Q 032978 98 REGAVVDKLVGANPEEIRKRIDSF 121 (130)
Q Consensus 98 ~~g~~~~~~~g~~~~~l~~~i~~~ 121 (130)
+.|+.+.........+|..|++.+
T Consensus 12 ~tG~~l~g~~aP~~~~l~~WL~~~ 35 (45)
T smart00592 12 ETGKKLTGDDAPKAKDLERWLEEN 35 (45)
T ss_pred CCccEeccccCCcHHHHHHHHhcC
Confidence 567777655555789999999876
No 393
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.52 E-value=2.7e+02 Score=18.51 Aligned_cols=39 Identities=18% Similarity=0.322 Sum_probs=28.8
Q ss_pred HHHhhcCCCceEeEEeEEEcCCChhhhhhhHHHHHHHHhCCC
Q 032978 27 VSQANNQGCPVRNVVVHFTAIWCMPSVAMNPLFEELASAYPD 68 (130)
Q Consensus 27 ~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~l~~~~~~ 68 (130)
+.+..++.-.. +|..|.-.|.++-.-+|.|-.--+.|.+
T Consensus 72 itqsyyrsaha---lilvydiscqpsfdclpewlreie~yan 110 (213)
T KOG0095|consen 72 ITQSYYRSAHA---LILVYDISCQPSFDCLPEWLREIEQYAN 110 (213)
T ss_pred HHHHHhhhcce---EEEEEecccCcchhhhHHHHHHHHHHhh
Confidence 33444566667 8899999999998888988776667743
No 394
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=20.45 E-value=1.3e+02 Score=18.12 Aligned_cols=21 Identities=14% Similarity=0.351 Sum_probs=15.9
Q ss_pred hHHHHHHHHhCCCeEEEEEec
Q 032978 56 NPLFEELASAYPDVLFLSVDV 76 (130)
Q Consensus 56 ~~~l~~l~~~~~~v~~~~vd~ 76 (130)
...++++.+.+|+..|+.|--
T Consensus 52 ~~~i~~i~~~fP~~kfiLIGD 72 (100)
T PF09949_consen 52 RDNIERILRDFPERKFILIGD 72 (100)
T ss_pred HHHHHHHHHHCCCCcEEEEee
Confidence 457788888899888888843
No 395
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=20.36 E-value=1.1e+02 Score=22.95 Aligned_cols=64 Identities=8% Similarity=0.085 Sum_probs=35.2
Q ss_pred EEcCCChhhh-hhhHHHHHHHHhC----CCeEEEEEeccCcH--hH-HHhcCCCCC--CEEEEeeCCeEEeeEe
Q 032978 44 FTAIWCMPSV-AMNPLFEELASAY----PDVLFLSVDVDDVK--DV-ASKLEVKAM--PTFLLMREGAVVDKLV 107 (130)
Q Consensus 44 f~~~~C~~C~-~~~~~l~~l~~~~----~~v~~~~vd~~~~~--~~-~~~~~v~~~--P~~~~~~~g~~~~~~~ 107 (130)
..-|.|+.|. .+....+++.+.+ ..+.+..+-|.-|. +- -.++|+-+- -..++|++|+.+....
T Consensus 260 iSCPtCGR~~~dl~~~~~~ve~~l~~~~~~l~VAVMGCvVNGPGEak~ADiGIaggg~g~~~lF~~G~~~~kv~ 333 (346)
T TIGR00612 260 VACPSCGRTGFDVEKVVRRVQEALFHLKTPLKVAVMGCVVNGPGEAKHADIGISGGGTGSAILFKRGKPKAKQP 333 (346)
T ss_pred EECCCCCCcCCCHHHHHHHHHHHHhcCCCCCEEEEECceecCCchhhccCeeeecCCCCceEEEECCEEeEecC
Confidence 4455565553 2223333333322 24888888776543 11 234666543 3578889999877643
No 396
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=20.36 E-value=1.4e+02 Score=17.37 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=17.3
Q ss_pred HHHhcCCCCCCEEEEeeCCeEEe
Q 032978 82 VASKLEVKAMPTFLLMREGAVVD 104 (130)
Q Consensus 82 ~~~~~~v~~~P~~~~~~~g~~~~ 104 (130)
.++.+++...++++++.+|..++
T Consensus 30 ~~~~L~~~~~~~lvLeeDGT~Vd 52 (81)
T cd06537 30 ALETLLLSGVLTLVLEEDGTAVD 52 (81)
T ss_pred HHHHhCCCCceEEEEecCCCEEc
Confidence 35567887667888889998884
Done!