BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032979
         (129 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1BH8|A Chain A, Htafii18HTAFII28 HETERODIMER CRYSTAL STRUCTURE
 pdb|1BH9|A Chain A, Htafii18HTAFII28 HETERODIMER CRYSTAL STRUCTURE WITH
          BOUND Pcmbs
          Length = 45

 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 36/45 (80%)

Query: 31 VFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDL 75
          +F K+L+ MMYGFGDD NP  E+V ++ED+V+E+++++ HKA  +
Sbjct: 1  LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSI 45


>pdb|1X0M|A Chain A, A Human Kynurenine Aminotransferase Ii Homologue From
          Pyrococcus Horikoshii Ot3
          Length = 403

 Score = 26.2 bits (56), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 44 GDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRG 80
          G  PNP      ++ DI+VE +   A KA   G+ +G
Sbjct: 38 GGLPNPKTFPKEIIRDILVEIMEKYADKALQYGTTKG 74


>pdb|3AOV|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
           Aminotransferase In Complex With Plp
 pdb|3AOV|C Chain C, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
           Aminotransferase In Complex With Plp
 pdb|3AOW|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
           Aminotransferase In Complex With Akg
 pdb|3AOW|C Chain C, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
           Aminotransferase In Complex With Akg
 pdb|3ATH|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
           Aminotransferase In Complex With Four Akgs As Substrates
           And Allosteric Effectors
 pdb|3ATH|C Chain C, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
           Aminotransferase In Complex With Four Akgs As Substrates
           And Allosteric Effectors
 pdb|3AV7|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
           Aminotransferase In Complex With Pmp, Kyn As Substrates
           And Kya As Products
 pdb|3AV7|C Chain C, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
           Aminotransferase In Complex With Pmp, Kyn As Substrates
           And Kya As Products
          Length = 448

 Score = 25.8 bits (55), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 44  GDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRG 80
           G  PNP      ++ DI+VE +   A KA   G+ +G
Sbjct: 83  GGLPNPKTFPKEIIRDILVEIMEKYADKALQYGTTKG 119


>pdb|1M8P|A Chain A, Crystal Structure Of P. Chrysogenum Atp Sulfurylase In The
           T-State
 pdb|1M8P|B Chain B, Crystal Structure Of P. Chrysogenum Atp Sulfurylase In The
           T-State
 pdb|1M8P|C Chain C, Crystal Structure Of P. Chrysogenum Atp Sulfurylase In The
           T-State
          Length = 573

 Score = 25.4 bits (54), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 20  CETTSFKRKRGVFQKDLQHMMYGFG--DDPNPLPETVALVEDIVVEYVSDLAHK 71
           CE +    KRG++    +  + GF   DDP   PE   LV D   + V  + H+
Sbjct: 509 CEQSD---KRGIYAAARRGEIKGFTGVDDPYETPEKADLVVDFSKQSVRSIVHE 559


>pdb|1I2D|A Chain A, Crystal Structure Of Atp Sulfurylase From Penicillium
           Chrysogenum
 pdb|1I2D|B Chain B, Crystal Structure Of Atp Sulfurylase From Penicillium
           Chrysogenum
 pdb|1I2D|C Chain C, Crystal Structure Of Atp Sulfurylase From Penicillium
           Chrysogenum
          Length = 573

 Score = 25.4 bits (54), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 20  CETTSFKRKRGVFQKDLQHMMYGFG--DDPNPLPETVALVEDIVVEYVSDLAHK 71
           CE +    KRG++    +  + GF   DDP   PE   LV D   + V  + H+
Sbjct: 509 CEQSD---KRGIYAAARRGEIKGFTGVDDPYETPEKADLVVDFSKQSVRSIVHE 559


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.134    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,239,895
Number of Sequences: 62578
Number of extensions: 124670
Number of successful extensions: 311
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 308
Number of HSP's gapped (non-prelim): 13
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)