Query 032980
Match_columns 129
No_of_seqs 118 out of 1021
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 13:26:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032980.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032980hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_W 40S ribosomal protein S 100.0 2.9E-54 1E-58 309.1 12.5 129 1-129 1-130 (130)
2 1i6u_A 30S ribosomal protein S 100.0 1.6E-53 5.5E-58 305.3 12.9 129 1-129 1-130 (130)
3 2xzm_H Ribosomal protein S8 co 100.0 1.2E-53 4.1E-58 305.9 9.9 129 1-129 1-130 (130)
4 2vqe_H 30S ribosomal protein S 100.0 5.4E-50 1.9E-54 289.4 11.5 122 1-129 1-138 (138)
5 3bbn_H Ribosomal protein S8; s 100.0 2.3E-49 7.9E-54 284.8 12.7 120 1-129 1-134 (134)
6 1sei_A Ribosomal protein S8; p 100.0 2.6E-49 8.8E-54 283.4 12.6 118 4-129 4-130 (130)
7 1s03_H 30S ribosomal protein S 100.0 1E-48 3.6E-53 279.9 12.8 118 3-129 3-129 (129)
8 3rf2_A 30S ribosomal protein S 100.0 7.5E-48 2.6E-52 285.5 10.7 122 1-129 1-168 (168)
9 2zqe_A MUTS2 protein; alpha/be 60.1 28 0.00097 21.7 6.9 59 6-65 18-82 (83)
10 2hgc_A YJCQ protein; SR346, st 55.6 3.6 0.00012 27.5 0.8 23 32-54 32-54 (102)
11 3qd7_X Uncharacterized protein 50.7 57 0.002 22.3 6.9 62 6-67 61-133 (137)
12 2zrr_A Mundticin KS immunity p 42.0 13 0.00043 25.5 1.9 43 4-47 55-97 (118)
13 1a6s_A GAG polyprotein; core p 38.6 16 0.00054 23.4 1.8 22 28-49 21-42 (87)
14 2k19_A Putative piscicolin 126 33.7 11 0.00036 25.0 0.4 43 4-47 35-77 (98)
15 1r7j_A Conserved hypothetical 21.3 22 0.00076 22.6 0.2 43 4-48 8-52 (95)
16 2hzt_A Putative HTH-type trans 21.2 86 0.003 19.6 3.2 23 29-51 41-63 (107)
17 3l7w_A Putative uncharacterize 21.0 1E+02 0.0036 19.4 3.6 25 28-52 38-62 (108)
18 2heo_A Z-DNA binding protein 1 21.0 45 0.0015 19.5 1.6 19 30-48 39-57 (67)
No 1
>3u5c_W 40S ribosomal protein S22-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_H 3o30_O 3o2z_O 3u5g_W 1s1h_H 3jyv_H* 3iz6_H 2zkq_h
Probab=100.00 E-value=2.9e-54 Score=309.08 Aligned_cols=129 Identities=46% Similarity=0.820 Sum_probs=125.1
Q ss_pred CCC-chHHHHHHHhhhhhhcCCceEEeecchHHHHHHHHhhccCCcccceEEEeCCCcceEEEEEecccCCcccccccee
Q 032980 1 MGR-RILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELLGRVNDCRALTYRQD 79 (129)
Q Consensus 1 M~~-d~lad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~I~Lky~~~k~~~IspRvy 79 (129)
|+. |+||||||+||||.+++|+.|.+.|+||++.+||++|++||||++|++.+|++++++||+|||+.++|++||||+|
T Consensus 1 m~~~d~iad~lt~IrNA~~~~~~~v~i~P~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lk~r~~k~~~ISpR~y 80 (130)
T 3u5c_W 1 MTRSSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFN 80 (130)
T ss_dssp -CCCCHHHHHHHHHHHHHHTTCSEEEECSCCHHHHHHHHHHHTTTSSCCEEEECCSSSCEEEEECCSCCSCEEECSSCCB
T ss_pred CCcccHHHHHHHHhHHHHHcCCceEEEecCCHHHHHHHHHHHHCCCccceeeeccCCCceEEEEEccccCCCCeEEccee
Confidence 775 9999999999999999999998679999999999999999999999999998899999999999999999999999
Q ss_pred ecccchhhhhcccCCCCCceEEEEECCCCcccHHHHHHcCCCeEEEEEEC
Q 032980 80 IKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 129 (129)
Q Consensus 80 ~~~~~l~~~~~~~~~~~~~Gi~IlSTs~Gimt~~eA~~~~~GGevL~~v~ 129 (129)
++.+|||+|.+|++|++|+|++|||||+|||||+|||++++|||+||+||
T Consensus 81 ~~~~el~kv~~g~lp~~~~Gi~IlSTs~Gimt~~eAr~~~vGGevL~~v~ 130 (130)
T 3u5c_W 81 VKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKHVSGKILGFVY 130 (130)
T ss_dssp CCSSHHHHHHHHHCSCSSSCEEEEEETTEEEEHHHHHHHTCCEEEEEEEC
T ss_pred cCHHHhHHHHcCCCCCCCceEEEEEcCCCceeHHHHHHhCCCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999998
No 2
>1i6u_A 30S ribosomal protein S8P; protein-RNA interactions, ribosome, RNA, X-RAY crystallography; 2.60A {Methanocaldococcus jannaschii} SCOP: d.140.1.1
Probab=100.00 E-value=1.6e-53 Score=305.25 Aligned_cols=129 Identities=38% Similarity=0.685 Sum_probs=124.5
Q ss_pred CCC-chHHHHHHHhhhhhhcCCceEEeecchHHHHHHHHhhccCCcccceEEEeCCCcceEEEEEecccCCcccccccee
Q 032980 1 MGR-RILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELLGRVNDCRALTYRQD 79 (129)
Q Consensus 1 M~~-d~lad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~I~Lky~~~k~~~IspRvy 79 (129)
|++ ||||||||+||||++++|++|.+.|+||++.+||++|++||||++|++.+++.++++||+|||+.+++++||||+|
T Consensus 1 M~~~d~iad~lt~IrNA~~~~~~~V~i~P~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lky~i~~~~~IS~R~y 80 (130)
T 1i6u_A 1 MSLMDPLANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNGYIGEFEFIEDGRAGIFKVELIGKINKCGAIKPRFP 80 (130)
T ss_dssp -CCCCHHHHHHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTTSSCCEEEECCSSSCEEEEECCSCCSCEEECSSCCE
T ss_pred CCccCHHHHHHHHhHHHHHcCCCEEEEECchHHHHHHHHHHHHCCccccEEEEecCCceEEEEEEeeecccCCEEECCee
Confidence 775 9999999999999999999999779999999999999999999999998887788999999999999999999999
Q ss_pred ecccchhhhhcccCCCCCceEEEEECCCCcccHHHHHHcCCCeEEEEEEC
Q 032980 80 IKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 129 (129)
Q Consensus 80 ~~~~~l~~~~~~~~~~~~~Gi~IlSTs~Gimt~~eA~~~~~GGevL~~v~ 129 (129)
++.+|||+|.++++|+.|+|++|||||+|||||+|||++++|||+||+||
T Consensus 81 ~~~~~l~kv~~~~lp~~g~G~~IlSTs~Gimt~~eAr~~~vGGevL~~v~ 130 (130)
T 1i6u_A 81 VKKFGYEKFEKRYLPARDFGILIVSTTQGVMSHEEAKKRGLGGRLLAYVY 130 (130)
T ss_dssp ECTTCCHHHHHHHCSSTTCCEEEEEETTEEEEHHHHHHTTCCEEEEEEEC
T ss_pred cChhhhHHHHhccCCCCCceEEEEECCcCceeHHHHHHcCCCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999
No 3
>2xzm_H Ribosomal protein S8 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_H
Probab=100.00 E-value=1.2e-53 Score=305.86 Aligned_cols=129 Identities=45% Similarity=0.808 Sum_probs=124.7
Q ss_pred CCC-chHHHHHHHhhhhhhcCCceEEeecchHHHHHHHHhhccCCcccceEEEeCCCcceEEEEEecccCCcccccccee
Q 032980 1 MGR-RILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELLGRVNDCRALTYRQD 79 (129)
Q Consensus 1 M~~-d~lad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~I~Lky~~~k~~~IspRvy 79 (129)
|++ ||||||||+||||++++|++|.+.|+||++.+||++|++||||++|++.+++.++++||+|||..+++.+||||+|
T Consensus 1 M~~~d~iad~lt~IrNA~~~~~~~V~i~P~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lky~i~~~~~IS~R~y 80 (130)
T 2xzm_H 1 MVKVNILAECLKDLVNAEKMGKKQVLLRPVSKVVLKFLRIMQKNGYIGEFEVIDDHRSKKVVVELIGRINKCGVISPRYD 80 (130)
T ss_dssp -CCCCHHHHHHHHHHHHHHHTCSEEEECSCCHHHHHHHHHHHHHTSSCCEEEECCSSSCEEEEECCSCCCCEEECTTCCB
T ss_pred CCccCHHHHHHHHhHHHHHcCCCEEEEEcchHHHHHHHHHHHHCCCcceEEEEecCCceEEEEEEecccccCcEEECcee
Confidence 775 9999999999999999999999779999999999999999999999998888788999999999999999999999
Q ss_pred ecccchhhhhcccCCCCCceEEEEECCCCcccHHHHHHcCCCeEEEEEEC
Q 032980 80 IKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 129 (129)
Q Consensus 80 ~~~~~l~~~~~~~~~~~~~Gi~IlSTs~Gimt~~eA~~~~~GGevL~~v~ 129 (129)
++.+|||+|.++++|+.|+|++|||||+|||||+|||++++|||+||+||
T Consensus 81 ~~~~~l~kv~~~~lp~~g~Gi~IlSTs~Gimt~~eAr~~~vGGevL~~v~ 130 (130)
T 2xzm_H 81 VPLADFEKWTNNILPSRQFGNVVLTTTYGILTHEECRKRHTGGKILGFFY 130 (130)
T ss_dssp CCGGGHHHHHHHHSSSTTCCCCCEECSSCEECTTHHHHTTCCCEECEEEC
T ss_pred CCHHHhHHHHhccCCCCCceEEEEECCccceeHHHHHHcCCCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999
No 4
>2vqe_H 30S ribosomal protein S8, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.140.1.1 PDB: 1eg0_E* 1fka_H 1gix_K* 1hnw_H* 1hnx_H* 1hnz_H* 1hr0_H 1ibk_H* 1ibl_H* 1ibm_H 1j5e_H 1jgo_K* 1jgp_K* 1jgq_K* 1ml5_K* 1n32_H* 1n33_H* 1n34_H 1n36_H 1pns_H ...
Probab=100.00 E-value=5.4e-50 Score=289.37 Aligned_cols=122 Identities=24% Similarity=0.312 Sum_probs=116.6
Q ss_pred CCCchHHHHHHHhhhhhhcCCceEEeecchHHHHHHHHhhccCCcccceEEEeCCCcceEEEEEecccCC-------ccc
Q 032980 1 MGRRILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELLGRVND-------CRA 73 (129)
Q Consensus 1 M~~d~lad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~I~Lky~~~k-------~~~ 73 (129)
|.+||||||||+||||++++|++|.+ |+||++.+||++|++||||++|++.+++.++.++|+|||+.++ +|+
T Consensus 1 m~~d~iad~ltrIrNA~~~~k~~V~i-P~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lky~~~~~~~~~~~~~v 79 (138)
T 2vqe_H 1 MLTDPIADMLTRIRNATRVYKESTDV-PASRFKEEILRILAREGFIKGYERVDVDGKPYLRVYLKYGPRRQGPDPRPEQV 79 (138)
T ss_dssp CCSCHHHHHHHHHHHHHHTTCSCCCC-BCCHHHHHHHHHHHHTTSSSEEEEEEETTEEEEEEECCBCCCCSSSCCCCCBS
T ss_pred CccchHHHHHHHhHHHHHcCCCEEEe-cCcHHHHHHHHHHHHcCcceeEEEEecCCceEEEEEEecCcCCccccccCCcc
Confidence 66799999999999999999999998 9999999999999999999999988877788999999997676 899
Q ss_pred cc-------c--ceeecccchhhhhcccCCCCCceEEEEECCCCcccHHHHHHcCCCeEEEEEEC
Q 032980 74 LT-------Y--RQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 129 (129)
Q Consensus 74 Is-------p--Rvy~~~~~l~~~~~~~~~~~~~Gi~IlSTs~Gimt~~eA~~~~~GGevL~~v~ 129 (129)
|+ | |+|++.+|||+|.+ |+|++|||||+|||||+|||++++|||+||+||
T Consensus 80 I~~ikriSkPg~Riy~~~~~lpkv~~------g~Gi~IlSTskGimt~~eAr~~~vGGEvLc~v~ 138 (138)
T 2vqe_H 80 IHHIRRISKPGRRVYVGVKEIPRVRR------GLGIAILSTSKGVLTDREARKLGVGGELICEVW 138 (138)
T ss_dssp CSCEEECSBTTBCCEECGGGCCCGGG------GTSEEEEEETTEEEEHHHHHHTTCCEEEEEEEC
T ss_pred ccccEEecCCCcceEeCHHHHHHHhC------CceEEEEECCCCceeHHHHHHcCCCCEEEEEEC
Confidence 88 6 99999999999998 699999999999999999999999999999999
No 5
>3bbn_H Ribosomal protein S8; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=2.3e-49 Score=284.84 Aligned_cols=120 Identities=18% Similarity=0.314 Sum_probs=114.8
Q ss_pred CCCchHHHHHHHhhhhhhcCCceEEeecchHHHHHHHHhhccCCcccceEEEeC-CCcceEEEEEecccCCccccc----
Q 032980 1 MGRRILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDP-HRVGKIKVELLGRVNDCRALT---- 75 (129)
Q Consensus 1 M~~d~lad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eGyI~~~~~~~~-~~~~~i~I~Lky~~~k~~~Is---- 75 (129)
|.+||||||||+||||++++|++|.+ |+||++.+||++|++||||++|++.++ +. +++||+||| .+++|+|+
T Consensus 1 m~~d~iad~lt~IrNA~~~~k~~V~i-P~Sk~~~~il~iL~~eGyI~~~~~~~~~~~-~~i~v~Lky-~~~~~vI~p~~~ 77 (134)
T 3bbn_H 1 MGKDTIADIITCIRNADMNRKGTVRI-VSTNITENIVKILLREGFIENARKHQERNK-YFLVLTLRH-RRNKKGPYLNTF 77 (134)
T ss_dssp CCSCHHHHHHHHHHHHHHTTCSEEEE-ECCHHHHHHTHHHHTTTSSSCEEEEESSSC-EEEEEECCB-CCCSSSCCBSCS
T ss_pred CcccHHHHHHHHhHHHHHcCCCEEEE-eCcHHHHHHHHHHHHCCcceeEEEEecCCC-cEEEEEEec-CCCCceeecccc
Confidence 66799999999999999999999998 999999999999999999999999887 77 899999999 67789998
Q ss_pred -------c--ceeecccchhhhhcccCCCCCceEEEEECCCCcccHHHHHHcCCCeEEEEEEC
Q 032980 76 -------Y--RQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 129 (129)
Q Consensus 76 -------p--Rvy~~~~~l~~~~~~~~~~~~~Gi~IlSTs~Gimt~~eA~~~~~GGevL~~v~ 129 (129)
| |+|++.+|||+|.+ |+|++|||||+|||||+|||++++|||+||+||
T Consensus 78 ~ikriSkPg~Riy~~~~~lpkv~~------g~Gi~IlSTskGimt~~eAr~~~vGGevLc~v~ 134 (134)
T 3bbn_H 78 HLKRVSRPGLRIYSNYQRIPRILG------GMGIAILSTSRGIMTDREARLEGIGGEILCYIW 134 (134)
T ss_dssp CEEESSBTTBCCEECSSSCCCGGG------TTSEEEEEESSSEECTTHHHHHTCCEEEEEEEC
T ss_pred ccEEecCCCcceEcCHHHHHHHhC------CceEEEEECCcccccHHHHHHcCCCcEEEEEEC
Confidence 5 99999999999998 799999999999999999999999999999999
No 6
>1sei_A Ribosomal protein S8; prokaryotic, rRNA-binding; 1.90A {Geobacillus stearothermophilus} SCOP: d.140.1.1
Probab=100.00 E-value=2.6e-49 Score=283.40 Aligned_cols=118 Identities=26% Similarity=0.451 Sum_probs=113.3
Q ss_pred chHHHHHHHhhhhhhcCCceEEeecchHHHHHHHHhhccCCcccceEEEeCCCcceEEEEEecccCCccccc-------c
Q 032980 4 RILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELLGRVNDCRALT-------Y 76 (129)
Q Consensus 4 d~lad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~I~Lky~~~k~~~Is-------p 76 (129)
||||||||+||||++++|++|.+ |+||++.+||++|++||||++|++.+++.+++++|+|||+.+ +|+|+ |
T Consensus 4 d~iad~lt~IrNA~~~~~~~v~i-P~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lky~~~-~~vI~~i~rISkP 81 (130)
T 1sei_A 4 DPIADMLTAIRNANMVRHEKLEV-PASKIKREIAEILKREGFIRDYEYIEDNKQGILRIFLKYGPN-ERVITGLKRISKP 81 (130)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEE-ECCHHHHHHHHHHHHTTSEEEEEEEESSSCEEEEEEECBSSS-SBSCCCEEECCBT
T ss_pred ChHHHHHHHhHHHHHcCCCEEEe-cCcHHHHHHHHHHHHCCCceeEEEEecCCccEEEEEEecCCC-CcceeeeEEEcCC
Confidence 99999999999999999999998 999999999999999999999999888878899999999866 78777 6
Q ss_pred --ceeecccchhhhhcccCCCCCceEEEEECCCCcccHHHHHHcCCCeEEEEEEC
Q 032980 77 --RQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 129 (129)
Q Consensus 77 --Rvy~~~~~l~~~~~~~~~~~~~Gi~IlSTs~Gimt~~eA~~~~~GGevL~~v~ 129 (129)
|+|++.+|||+|.+ |+|++|||||+|||||+|||++++|||+||+||
T Consensus 82 g~R~y~~~~~l~~v~~------g~Gi~IlSTskGimt~~eAr~~~vGGevL~~v~ 130 (130)
T 1sei_A 82 GLRVYVKAHEVPRVLN------GLGIAILSTSQGVLTDKEARQKGTGGEIIAYVI 130 (130)
T ss_dssp TBCCEECGGGCCCCCT------TSCEEEEEETTEEEEHHHHHHHTCCEEEEEEEC
T ss_pred CCeeEcCHHHHHHHhC------CCeEEEEECCcccccHHHHHHcCCCcEEEEEEC
Confidence 99999999999998 799999999999999999999999999999999
No 7
>1s03_H 30S ribosomal protein S8; protein-RNA complex, SPC operon, transcription-RN; 2.70A {Escherichia coli} SCOP: d.140.1.1 PDB: 1p6g_H 1p87_H 2avy_H 2aw7_H 2i2p_H 2i2u_H 2qal_H* 2qan_H* 2qb9_H* 2qbb_H* 2qbd_H 2qbf_H 2qbh_H* 2qbj_H* 2qou_H* 2qow_H* 2qoy_H* 2qp0_H* 2vho_H 2vhp_H ...
Probab=100.00 E-value=1e-48 Score=279.94 Aligned_cols=118 Identities=22% Similarity=0.392 Sum_probs=112.0
Q ss_pred CchHHHHHHHhhhhhhcCCceEEeecchHHHHHHHHhhccCCcccceEEEeCCCcceEEEEEecccCCccccc-------
Q 032980 3 RRILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELLGRVNDCRALT------- 75 (129)
Q Consensus 3 ~d~lad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~I~Lky~~~k~~~Is------- 75 (129)
+||||||||+||||++++|++|.+ |+||++.+||++|++||||++|++ +++.++++||+||| .+++|+|+
T Consensus 3 ~d~iad~lt~IrNA~~~~~~~v~i-P~Sk~~~~il~iL~~eGyI~~~~~-~~~~~~~i~v~Lky-~~~~~vI~~i~rISk 79 (129)
T 1s03_H 3 QDPIADMLTRIRNGQAANKAAVTM-PSSKLKVAIANVLKEEGFIEDFKV-EGDTKPELELTLKY-FQGKAVVESIQRVSR 79 (129)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEE-ECCHHHHHHHHHHHHTTSEEEEEE-ECSSSCEEEEEECB-SSSSBSCSCEEECSB
T ss_pred cChHHHHHHHhHHHHHcCCCEEEE-eCcHHHHHHHHHHHHCCcceeEEE-cCCCceEEEEEEec-CCCCcccccceEEcC
Confidence 499999999999999999999998 999999999999999999999998 66668899999999 56678877
Q ss_pred c--ceeecccchhhhhcccCCCCCceEEEEECCCCcccHHHHHHcCCCeEEEEEEC
Q 032980 76 Y--RQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 129 (129)
Q Consensus 76 p--Rvy~~~~~l~~~~~~~~~~~~~Gi~IlSTs~Gimt~~eA~~~~~GGevL~~v~ 129 (129)
| |+|++.+|||+|.+ |+|++|||||+|||||+|||++++|||+||+||
T Consensus 80 Pg~R~y~~~~~l~kv~~------g~Gi~IlSTskGimt~~eAr~~~vGGevL~~v~ 129 (129)
T 1s03_H 80 PGLRIYKRKDELPKVMA------GLGIAVVSTSKGVMTDRAARQAGLGGEIICYVA 129 (129)
T ss_dssp TTBCCEECGGGSCCSCS------SSCEEEEEETTEEEEHHHHHHHTCCEEEEEEEC
T ss_pred CCcceEcCHHHHHHHhC------CceEEEEECCcccccHHHHHHcCCCcEEEEEEC
Confidence 6 99999999999998 799999999999999999999999999999998
No 8
>3rf2_A 30S ribosomal protein S8; RNA-binding protein, hyperthermophilic bacterium, ribosome; 2.16A {Aquifex aeolicus}
Probab=100.00 E-value=7.5e-48 Score=285.54 Aligned_cols=122 Identities=23% Similarity=0.303 Sum_probs=112.4
Q ss_pred CCC-chHHHHHHHhhhhhhcCCceEEeecchHHHHHHHHhhccCCcccceEEEeCC------------------------
Q 032980 1 MGR-RILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPH------------------------ 55 (129)
Q Consensus 1 M~~-d~lad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eGyI~~~~~~~~~------------------------ 55 (129)
|++ |+|||||||||||.+|+|+.|.+ |+||++.+|+++|++||||++|++.+++
T Consensus 1 m~~~d~iad~lt~IrNA~~ar~~~v~i-P~Skl~~~i~~iL~~eGyI~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 79 (168)
T 3rf2_A 1 MSAVDPIADMFSAIKNAIMRRDDFLYV-PSSKLKERILDVLKKEGFIQDWEALKGEKYEEEYKKMKELAEKSPNPKMKRY 79 (168)
T ss_dssp ---CCHHHHHHHHHHHHHHTTCSEEEE-ECCHHHHHHHHHHHHHTSEEEEEECCHHHHHHHHHHHHHHHHSSCCSSSHHH
T ss_pred CCcccHHHHHHHHHHHHHHcCCCEEEe-cccHHHHHHHHHHHHCCCccceEEecCCccccccccccccccCCCccccccc
Confidence 775 99999999999999999999998 9999999999999999999999998765
Q ss_pred ----------CcceEEEEEecccC--Cccccc-------c--ceeecccchhhhhcccCCCCCceEEEEECCCCcccHHH
Q 032980 56 ----------RVGKIKVELLGRVN--DCRALT-------Y--RQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEE 114 (129)
Q Consensus 56 ----------~~~~i~I~Lky~~~--k~~~Is-------p--Rvy~~~~~l~~~~~~~~~~~~~Gi~IlSTs~Gimt~~e 114 (129)
.++++||.|||+++ ++|+|+ | |+|++.+||++|.+ |+|++|||||+|||||+|
T Consensus 80 ~~~~t~~n~~~~~~l~v~LKY~~~~~k~pvI~~lkrISKPg~Riy~~~~eLprv~~------GlGi~IlSTskGImt~rE 153 (168)
T 3rf2_A 80 LKQLEEYNKGTQYPIKIYLKYLDPKKRKSAITNIVKVSKGGRRVYAGVRTMPYVKR------GLGIAIVSTDAGVMTDHE 153 (168)
T ss_dssp HHHHHHTTSTTCCEEEEEECBSSTTSCSBSCSCEEECSCSSSCCEECSTTCCCSGG------GTSEEEEEETTEEEEHHH
T ss_pred ccccccccccccceEEEEEEeecCCCCCccccccEEecCCCceEEcCHHHHHHHHc------CCcEEEEEcCCcceeHHH
Confidence 57899999999743 488884 8 99999999999998 699999999999999999
Q ss_pred HHHcCCCeEEEEEEC
Q 032980 115 ALRRNVGGQVLGYFH 129 (129)
Q Consensus 115 A~~~~~GGevL~~v~ 129 (129)
|+++++|||+||+||
T Consensus 154 Ar~~~vGGevLc~Vw 168 (168)
T 3rf2_A 154 ARRMRKGGEVIAFVW 168 (168)
T ss_dssp HHHTTCCEEEEEEEC
T ss_pred HHHhCCCCEEEEEEC
Confidence 999999999999999
No 9
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=60.14 E-value=28 Score=21.68 Aligned_cols=59 Identities=20% Similarity=0.185 Sum_probs=47.0
Q ss_pred HHHHHHHhhhhhhcCCceEEeecc----hHHHHHHHHhhccCCcccceEEEeCC--CcceEEEEEe
Q 032980 6 LNNALRAIVNAERRGKATVELQPI----STVMSSFLNIMKYRGYVKDFQVYDPH--RVGKIKVELL 65 (129)
Q Consensus 6 lad~lt~IrNa~~a~~~~v~i~p~----Sk~~~~il~iL~~eGyI~~~~~~~~~--~~~~i~I~Lk 65 (129)
...+-.-|..|..++.+.|.| -+ ..+...+-+.|.+...+..|...+.+ ..+-.+|.||
T Consensus 18 ~~~l~~fl~~a~~~g~~~v~I-IHGkG~GvLr~~V~~~L~~~~~V~~f~~a~~~~GG~Gat~V~Lk 82 (83)
T 2zqe_A 18 LLEVDQALEEARALGLSTLRL-LHGKGTGALRQAIREALRRDKRVESFADAPPGEGGHGVTVVALR 82 (83)
T ss_dssp HHHHHHHHHHHHHTTCSEEEE-ECCSTTSHHHHHHHHHHHHCTTEEEEEECCTTTTGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHCCCCEEEE-EECCCchHHHHHHHHHHhcCCceeEEEEcCcccCCCEEEEEEEe
Confidence 345566788999999999998 44 45888999999999999999886543 3677888886
No 10
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=55.56 E-value=3.6 Score=27.45 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=19.1
Q ss_pred HHHHHHHhhccCCcccceEEEeC
Q 032980 32 VMSSFLNIMKYRGYVKDFQVYDP 54 (129)
Q Consensus 32 ~~~~il~iL~~eGyI~~~~~~~~ 54 (129)
.-..+++.|.++|||.|+.+.++
T Consensus 32 ~~~~il~~L~d~GyI~Gv~~~~~ 54 (102)
T 2hgc_A 32 QFDDAVNFLKREGYIIGVHYSDD 54 (102)
T ss_dssp HHHHHHHHHHHHTSEECCEESSS
T ss_pred HHHHHHHHHHHCCCccceEEEeC
Confidence 34678999999999999998654
No 11
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=50.65 E-value=57 Score=22.32 Aligned_cols=62 Identities=18% Similarity=0.028 Sum_probs=48.5
Q ss_pred HHHHHHHhhhhhhcCCceEEeec----ch-----HHHHHHHHhhccCCcccceEEEeC--CCcceEEEEEecc
Q 032980 6 LNNALRAIVNAERRGKATVELQP----IS-----TVMSSFLNIMKYRGYVKDFQVYDP--HRVGKIKVELLGR 67 (129)
Q Consensus 6 lad~lt~IrNa~~a~~~~v~i~p----~S-----k~~~~il~iL~~eGyI~~~~~~~~--~~~~~i~I~Lky~ 67 (129)
...+-.-|..|..++.+.|.|+. .| .+...+-..|.+..++..|..... +..+-.+|.||-.
T Consensus 61 ~~~L~~fL~~a~~~g~r~V~IIHGKG~gs~~~~~vLk~~V~~wL~~~~~V~~f~~a~~~~GG~Gat~V~Lr~~ 133 (137)
T 3qd7_X 61 RKMVFSFIQQALADGLRNVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGGSGACYVALRKT 133 (137)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCCCSSTTSHHHHHHHHHHHHHHTSTTEEEEEECCGGGTGGGEEEEEECC-
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCchHHHHHHHHHHHhcCCceeEEeecCccCCCCEEEEEEEEch
Confidence 34556778899999999999832 12 689999999999999999987543 4578899999854
No 12
>2zrr_A Mundticin KS immunity protein; antiparallel four-helix bundle, antimicrobial protein; 1.80A {Enterococcus mundtii}
Probab=41.98 E-value=13 Score=25.48 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=38.4
Q ss_pred chHHHHHHHhhhhhhcCCceEEeecchHHHHHHHHhhccCCccc
Q 032980 4 RILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVK 47 (129)
Q Consensus 4 d~lad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eGyI~ 47 (129)
.+|-++|..-++....+...|.+ --|+++.+|.++|.+++.+-
T Consensus 55 ~~Lk~vL~~Y~~ELk~~~tSvPf-ILSRMNldIS~vL~~n~I~L 97 (118)
T 2zrr_A 55 ESLRKVLGSYLKKLKNEGTSVPL-VLSRMNIEISNAIKKDGVSL 97 (118)
T ss_dssp HHHHHHHHHHHHHHHHCCSCHHH-HHHHHHHHHHHHHTTTTCCC
T ss_pred chHHHHHHHHHHHHhcCCCCchh-HHHHhhHHHHHHHHHCCccc
Confidence 57888899999999999999987 78999999999999998764
No 13
>1a6s_A GAG polyprotein; core protein, virus structure, membrane binding, viral protein; NMR {Rous sarcoma virus - prague C} SCOP: a.61.1.4
Probab=38.63 E-value=16 Score=23.42 Aligned_cols=22 Identities=14% Similarity=0.360 Sum_probs=20.2
Q ss_pred cchHHHHHHHHhhccCCcccce
Q 032980 28 PISTVMSSFLNIMKYRGYVKDF 49 (129)
Q Consensus 28 p~Sk~~~~il~iL~~eGyI~~~ 49 (129)
|+.|-.-++|..|++||.+.+=
T Consensus 21 pskKeI~a~LslL~kEg~l~sP 42 (87)
T 1a6s_A 21 PSKKEIGAMLSLLQKEGLLMSP 42 (87)
T ss_dssp SCSSHHHHHHHTGGGTTCTTCG
T ss_pred CcHHHHHHHHHHHHHccCcCCh
Confidence 8999999999999999999854
No 14
>2k19_A Putative piscicolin 126 immunity protein; PISI, bacteriocin, immune system, antimicrobial protein; NMR {Carnobacterium maltaromaticum}
Probab=33.68 E-value=11 Score=25.04 Aligned_cols=43 Identities=16% Similarity=0.214 Sum_probs=37.2
Q ss_pred chHHHHHHHhhhhhhcCCceEEeecchHHHHHHHHhhccCCccc
Q 032980 4 RILNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVK 47 (129)
Q Consensus 4 d~lad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eGyI~ 47 (129)
.++-++|..=++....+...|.+ --|.++.+|.++|.+++.+-
T Consensus 35 ~~Lk~vL~~Y~~EL~~~~tSvP~-ILSRMNldiS~vl~~n~i~L 77 (98)
T 2k19_A 35 ESLKKVLENYLEELKQKSASVPL-ILSRMNLDISKAIRNDGVTL 77 (98)
T ss_dssp SSTHHHHHHHHHHHHSSSSCHHH-HHHHHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhcCCCcchH-HHHHhhHHHHHHHHHCCccc
Confidence 56778888888998888888887 78999999999999988753
No 15
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=21.29 E-value=22 Score=22.56 Aligned_cols=43 Identities=9% Similarity=0.193 Sum_probs=28.3
Q ss_pred chHHHHHHHhhhhhhcCCceEEe--ecchHHHHHHHHhhccCCcccc
Q 032980 4 RILNNALRAIVNAERRGKATVEL--QPISTVMSSFLNIMKYRGYVKD 48 (129)
Q Consensus 4 d~lad~lt~IrNa~~a~~~~v~i--~p~Sk~~~~il~iL~~eGyI~~ 48 (129)
+.++|+|..|.++ .+.+.+.- .=........++.|.++|||.-
T Consensus 8 eIi~~IL~~i~~~--~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~ 52 (95)
T 1r7j_A 8 EIIQAILEACKSG--SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQ 52 (95)
T ss_dssp HHHHHHHHHHTTC--BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcC--CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEE
Confidence 6788999988865 33333221 0123455678899999999973
No 16
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=21.20 E-value=86 Score=19.63 Aligned_cols=23 Identities=9% Similarity=0.202 Sum_probs=17.3
Q ss_pred chHHHHHHHHhhccCCcccceEE
Q 032980 29 ISTVMSSFLNIMKYRGYVKDFQV 51 (129)
Q Consensus 29 ~Sk~~~~il~iL~~eGyI~~~~~ 51 (129)
..+.....++.|.++|+|.....
T Consensus 41 s~~tls~~L~~Le~~GlI~r~~~ 63 (107)
T 2hzt_A 41 TQKMLTQQLRELEADGVINRIVY 63 (107)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CHHHHHHHHHHHHHCCCEEEeec
Confidence 34456677888999999997644
No 17
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=20.96 E-value=1e+02 Score=19.43 Aligned_cols=25 Identities=12% Similarity=0.275 Sum_probs=20.3
Q ss_pred cchHHHHHHHHhhccCCcccceEEE
Q 032980 28 PISTVMSSFLNIMKYRGYVKDFQVY 52 (129)
Q Consensus 28 p~Sk~~~~il~iL~~eGyI~~~~~~ 52 (129)
.........|+-|.++|||......
T Consensus 38 i~~~tly~~L~~Le~~GlI~~~~~~ 62 (108)
T 3l7w_A 38 IKESTLYPILKKLEKAGYLSTYTQE 62 (108)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred CCcChHHHHHHHHHHCCCeEEEeec
Confidence 4567788899999999999987543
No 18
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=20.96 E-value=45 Score=19.55 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=15.0
Q ss_pred hHHHHHHHHhhccCCcccc
Q 032980 30 STVMSSFLNIMKYRGYVKD 48 (129)
Q Consensus 30 Sk~~~~il~iL~~eGyI~~ 48 (129)
-.....+++.|.++|||..
T Consensus 39 r~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 39 KKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHCCcEec
Confidence 3556788899999999864
Done!