RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 032980
         (129 letters)



>d1i6ua_ d.140.1.1 (A:) Ribosomal protein S8 {Archaeon Methanococcus
           jannaschii [TaxId: 2190]}
          Length = 129

 Score =  106 bits (265), Expect = 3e-31
 Identities = 48/123 (39%), Positives = 74/123 (60%)

Query: 6   LNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELL 65
           L NAL  I N ER GK  V ++P S ++   L +M+  GY+ +F+  +  R G  KVEL+
Sbjct: 6   LANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNGYIGEFEFIEDGRAGIFKVELI 65

Query: 66  GRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVL 125
           G++N C A+  R  +K    E +  R LP R +G ++++T  GV+ HEEA +R +GG++L
Sbjct: 66  GKINKCGAIKPRFPVKKFGYEKFEKRYLPARDFGILIVSTTQGVMSHEEAKKRGLGGRLL 125

Query: 126 GYF 128
            Y 
Sbjct: 126 AYV 128


>d1seia_ d.140.1.1 (A:) Ribosomal protein S8 {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 130

 Score = 85.4 bits (211), Expect = 4e-23
 Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 5/125 (4%)

Query: 6   LNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELL 65
           + + L AI NA       +E+ P S +      I+K  G+++D++  + ++ G +++ L 
Sbjct: 6   IADMLTAIRNANMVRHEKLEV-PASKIKREIAEILKREGFIRDYEYIEDNKQGILRIFL- 63

Query: 66  GRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGY---VVITTPDGVLDHEEALRRNVGG 122
               + R +T  + I    +  Y       R        +++T  GVL  +EA ++  GG
Sbjct: 64  KYGPNERVITGLKRISKPGLRVYVKAHEVPRVLNGLGIAILSTSQGVLTDKEARQKGTGG 123

Query: 123 QVLGY 127
           +++ Y
Sbjct: 124 EIIAY 128


>d2gy9h1 d.140.1.1 (H:3-128) Ribosomal protein S8 {Escherichia coli
           [TaxId: 562]}
          Length = 126

 Score = 73.8 bits (181), Expect = 1e-18
 Identities = 25/125 (20%), Positives = 53/125 (42%), Gaps = 6/125 (4%)

Query: 6   LNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELL 65
           + + L  I N +   KA V + P S +  +  N++K  G+++DF+V    +  ++++ L 
Sbjct: 4   IADMLTRIRNGQAANKAAVTM-PSSKLKVAIANVLKEEGFIEDFKVEGDTK-PELELTLK 61

Query: 66  GRVNDCRALTYRQDIKAS---EIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGG 122
                   +   Q +        +            G  V++T  GV+    A +  +GG
Sbjct: 62  YF-QGKAVVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGG 120

Query: 123 QVLGY 127
           +++ Y
Sbjct: 121 EIICY 125


>d1an7a_ d.140.1.1 (A:) Ribosomal protein S8 {Thermus thermophilus
           [TaxId: 274]}
          Length = 136

 Score = 68.5 bits (167), Expect = 2e-16
 Identities = 29/133 (21%), Positives = 49/133 (36%), Gaps = 13/133 (9%)

Query: 6   LNNALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYVKDFQVYDPHRVGKIKVELL 65
           + + L  I NA R  K + ++ P S      L I+   G++K ++  D      ++V L 
Sbjct: 4   IADMLTRIRNATRVYKESTDV-PASRFKEEILRILAREGFIKGYERVDVDGKPYLRVYLK 62

Query: 66  GRVNDCRALTYRQDIKASEIE-----------GYTVRALPTRQWGYVVITTPDGVLDHEE 114
                      R +     I            G        R  G  +++T  GVL   E
Sbjct: 63  YGPRRQ-GPDPRPEQVIHHIRRISKPGRRVYVGVKEIPRVRRGLGIAILSTSKGVLTDRE 121

Query: 115 ALRRNVGGQVLGY 127
           A +  VGG+++  
Sbjct: 122 ARKLGVGGELICE 134


>d1a87a_ f.1.1.1 (A:) Colicin N {Escherichia coli [TaxId: 562]}
          Length = 297

 Score = 25.7 bits (56), Expect = 1.7
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 80  IKASEIEGYTVRALPTRQWGYVVITTPDGVLDHEE 114
           I A  I+G  V    TR+  YV +T PD  +D   
Sbjct: 33  IDAESIKGTEVYTFHTRKGQYVKVTVPDSNIDKMR 67


>d1sxja1 a.80.1.1 (A:548-693) Replication factor C1 {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 146

 Score = 25.2 bits (55), Expect = 2.3
 Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 6/51 (11%)

Query: 5   ILNNALRAIVNAE------RRGKATVELQPISTVMSSFLNIMKYRGYVKDF 49
            +  A   I   +      R  +    L P+  V+SS     K  G++   
Sbjct: 66  AVAEAANCISLGDIVEKKIRSSEQLWSLLPLHAVLSSVYPASKVAGHMAGR 116


>d1h41a2 d.92.2.2 (A:5-151) alpha-D-glucuronidase, N-terminal domain
           {Pseudomonas cellulosa [TaxId: 155077]}
          Length = 147

 Score = 24.5 bits (53), Expect = 3.8
 Identities = 9/62 (14%), Positives = 22/62 (35%), Gaps = 2/62 (3%)

Query: 51  VYDPHRVGKIKVELLGRVNDCRALTYRQDIKASEIEGYTVRALPTRQWGYVVIT--TPDG 108
             +  +   + +          +L   + ++A   EGY +      +   V++   +  G
Sbjct: 60  RDEKLKDYSLVIGTPDNSPLIASLNLGERLQALGAEGYLLEQTRINKRHVVIVAANSDVG 119

Query: 109 VL 110
           VL
Sbjct: 120 VL 121


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.140    0.411 

Gapped
Lambda     K      H
   0.267   0.0583    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 510,562
Number of extensions: 22868
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 9
Length of query: 129
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 53
Effective length of database: 1,364,116
Effective search space: 72298148
Effective search space used: 72298148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.6 bits)