BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032981
         (129 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2FHJ|D Chain D, Crystal Structure Of Formylmethanofuran:
           Tetrahydromethanopterin Formyltransferase In Complex
           With Its Coenzymes
          Length = 296

 Score = 26.2 bits (56), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 20/64 (31%)

Query: 35  DNGF---ETTSNGSSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKT 91
           D G+   E T +G   V+I   H               ND   D + E LLDR+  C  T
Sbjct: 57  DXGYVPPEETPDGRPGVTIMIGH---------------NDE--DELKEQLLDRIGQCVMT 99

Query: 92  FPTA 95
            PTA
Sbjct: 100 APTA 103


>pdb|1FTR|A Chain A, Formylmethanofuran:tetrahydromethanopterin
           Formyltransferase From Methanopyrus Kandleri
 pdb|1FTR|B Chain B, Formylmethanofuran:tetrahydromethanopterin
           Formyltransferase From Methanopyrus Kandleri
 pdb|1FTR|C Chain C, Formylmethanofuran:tetrahydromethanopterin
           Formyltransferase From Methanopyrus Kandleri
 pdb|1FTR|D Chain D, Formylmethanofuran:tetrahydromethanopterin
           Formyltransferase From Methanopyrus Kandleri
 pdb|2FHJ|A Chain A, Crystal Structure Of Formylmethanofuran:
           Tetrahydromethanopterin Formyltransferase In Complex
           With Its Coenzymes
 pdb|2FHJ|B Chain B, Crystal Structure Of Formylmethanofuran:
           Tetrahydromethanopterin Formyltransferase In Complex
           With Its Coenzymes
 pdb|2FHJ|C Chain C, Crystal Structure Of Formylmethanofuran:
           Tetrahydromethanopterin Formyltransferase In Complex
           With Its Coenzymes
 pdb|2FHK|A Chain A, Crystal Structure Of Formylmethanofuran:
           Tetrahydromethanopterin Formyltransferase In Complex
           With Its Coenzymes
 pdb|2FHK|B Chain B, Crystal Structure Of Formylmethanofuran:
           Tetrahydromethanopterin Formyltransferase In Complex
           With Its Coenzymes
 pdb|2FHK|C Chain C, Crystal Structure Of Formylmethanofuran:
           Tetrahydromethanopterin Formyltransferase In Complex
           With Its Coenzymes
 pdb|2FHK|D Chain D, Crystal Structure Of Formylmethanofuran:
           Tetrahydromethanopterin Formyltransferase In Complex
           With Its Coenzymes
          Length = 296

 Score = 26.2 bits (56), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 17/57 (29%)

Query: 39  ETTSNGSSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTA 95
           E T +G   V+I   H               ND   D + E LLDR+  C  T PTA
Sbjct: 64  EETPDGRPGVTIMIGH---------------NDE--DELKEQLLDRIGQCVMTAPTA 103


>pdb|3P0R|A Chain A, Crystal Structure Of Azoreductase From Bacillus Anthracis
           Str. Sterne
          Length = 211

 Score = 25.8 bits (55), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 15/79 (18%)

Query: 23  PYALVP--SGSFCTDNGFETTSNGSSRVSIFDRHLKR-KQRDRAAW------LTRPNDSF 73
           PY  V   +G+F    GF+ T   +  V++ D++L +  + D+  +      LT P    
Sbjct: 53  PYVGVDXINGTFKAGKGFDLTEEEAKAVAVADKYLNQFLEADKVVFGFPLWNLTIP---- 108

Query: 74  VDAVAENLLDRLEDCRKTF 92
             AV    +D L    KTF
Sbjct: 109 --AVLHTYIDYLNRAGKTF 125


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,167,669
Number of Sequences: 62578
Number of extensions: 100992
Number of successful extensions: 156
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 154
Number of HSP's gapped (non-prelim): 4
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)