BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032981
(129 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O80543|Y1280_ARATH Putative methyltransferase At1g22800 OS=Arabidopsis thaliana
GN=At1g22800 PE=2 SV=2
Length = 355
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/111 (56%), Positives = 79/111 (71%), Gaps = 6/111 (5%)
Query: 13 LLRR--RRANNEPYALVPSGSFCTDNGFETTS---NGSSRVSIFDRHLKRKQRDRAAWLT 67
LL+R ++ + + + S SF T+ + SS+V IFDR LKR RDRAAWL+
Sbjct: 13 LLKRVPEKSTKQAHTFLASLSFSTEGAYGGDGEFQQNSSKVKIFDRDLKRIHRDRAAWLS 72
Query: 68 R-PNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRVVLQK 117
R NDSFVDAVA+NLLDRLEDC+K+FPTA CLGGSL AV+RLLRGR ++K
Sbjct: 73 RQKNDSFVDAVADNLLDRLEDCKKSFPTAFCLGGSLGAVKRLLRGRGGIEK 123
>sp|Q5RBS1|NDUF5_PONAB NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly
factor 5 OS=Pongo abelii GN=NDUFAF5 PE=2 SV=1
Length = 345
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 48 VSIFDRHLKRKQRDRAAWLTRPN--DSFVDAVAENLLDRLEDCRKTFPTALCLG 99
++IFDR LKRKQ++ AA P D + V + DR+ D + FP AL LG
Sbjct: 44 LNIFDRDLKRKQKNWAAQQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLG 97
>sp|Q5TEU4|NDUF5_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly
factor 5 OS=Homo sapiens GN=NDUFAF5 PE=1 SV=1
Length = 345
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 39 ETTSNGSSR-------VSIFDRHLKRKQRDRAAWLTRPN--DSFVDAVAENLLDRLEDCR 89
E TS S R ++IFDR LKRKQ++ AA P D + V + DR+ D
Sbjct: 28 EVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAARQPEPTKFDYLKEEVGSRIADRVYDIP 87
Query: 90 KTFPTALCLG 99
+ FP AL LG
Sbjct: 88 RNFPLALDLG 97
>sp|A2APY7|NDUF5_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly
factor 5 OS=Mus musculus GN=Ndufaf5 PE=2 SV=1
Length = 343
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 36 NGFETTSNGSSR-VSIFDRHLKRKQRDRAAWLTRPN--DSFVDAVAENLLDRLEDCRKTF 92
+G + + S R ++IFDR LKRKQ++ AA P D + V + DR+ D + F
Sbjct: 31 SGVPPSGSTSPRALNIFDRELKRKQKNWAARQPDPMKFDYLKEEVGSRIADRVYDIARDF 90
Query: 93 PTALCLG 99
P AL +G
Sbjct: 91 PLALDIG 97
>sp|B2GV71|NDUF5_RAT NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly
factor 5 OS=Rattus norvegicus GN=Ndufaf5 PE=2 SV=1
Length = 343
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 48 VSIFDRHLKRKQRDRAAWLTRPN--DSFVDAVAENLLDRLEDCRKTFPTALCLG 99
++IFDR LKRKQ++ AA P D + + + DR+ D + FP AL +G
Sbjct: 44 LNIFDRELKRKQKNWAARQPEPMKFDYLKEEIGSRIADRVYDIARDFPLALDIG 97
>sp|A3KP37|NDUF5_DANRE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
5 OS=Danio rerio GN=ndufaf5 PE=2 SV=1
Length = 321
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 48 VSIFDRHLKRKQRDRAAWL--TRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAV 105
+++FDR +KR+Q+D A+ L + D + V + DR+ D +TFP AL +G +
Sbjct: 24 MNVFDRSMKRRQKDWASSLLDSSKYDYLREEVGSRVADRVYDVARTFPLALDVGCGRSHI 83
Query: 106 RRLLRGRVV 114
L VV
Sbjct: 84 AEHLSKEVV 92
>sp|Q8DL83|LIPA1_THEEB Lipoyl synthase 1 OS=Thermosynechococcus elongatus (strain BP-1)
GN=lipA1 PE=3 SV=2
Length = 298
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 54 HLKRKQRDRAAWLTRPNDSFVD--AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG 111
L ++ RDRA W+ + V +E ++ ++D R+ L +G L+ + L
Sbjct: 182 ELLQRVRDRAPWIYSKSGIMVGLGETSEEVVALMQDLRQVGCDILTIGQYLQPSPKHLAV 241
Query: 112 RVVLQKENFEFWR 124
+ + E FE WR
Sbjct: 242 QAFIPPEQFEEWR 254
>sp|Q6WRH9|IGS10_RAT Immunoglobulin superfamily member 10 OS=Rattus norvegicus GN=Igsf10
PE=2 SV=1
Length = 2597
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
Query: 2 RAFGAFQRSSLLLRRRRANNEPYALVPSGSF-CTDNGFETTSNGSSRVSIFDRHLKRKQR 60
R+ + Q+ L + R + P+A+VPSG+F CT + + S V+ Q
Sbjct: 247 RSSSSPQQCPLCMNPRISKGRPFAMVPSGAFLCTKPTIDPSLKSKSLVT---------QE 297
Query: 61 DRAAWLTRPND 71
D + T P D
Sbjct: 298 DNGSASTSPQD 308
>sp|Q8NB66|UN13C_HUMAN Protein unc-13 homolog C OS=Homo sapiens GN=UNC13C PE=2 SV=3
Length = 2214
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 34 TDNGFETTSNGSSRVSIFDRHL-KRKQRDRAAWLTRPNDSFVDAVAENLLDRLE 86
++N F T +NGSS +S DR L +RKQ A P D ++ + + + E
Sbjct: 565 SENQFFTRTNGSSLLSSSDRELWQRKQEGTATLYDSPKDQHLNGGVQGIQGQTE 618
>sp|A8N513|M28P1_COPC7 Probable zinc metalloprotease CC1G_04591 OS=Coprinopsis cinerea
(strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)
GN=CC1G_04591 PE=3 SV=2
Length = 1005
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 44 GSSRVSIFDRHLKRKQRDRAAWLTRPNDSFV-DAVAENLLDRLED 87
GS ++ FD L R+ + A P +S DAV E LL+RL+D
Sbjct: 46 GSKKLKGFDLDLARRDLEHIAARPHPYNSHANDAVREYLLNRLDD 90
>sp|Q1QYX8|GCP_CHRSD Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC
BAA-138 / NCIMB 13768) GN=gcp PE=3 SV=1
Length = 343
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 14 LRRRRANNEPYALVPSGSFCTDNGFETTSNGSSRVSIFDR 53
L R A + A P G FCTDNG G+ R+ +R
Sbjct: 283 LDRETAKRQAQAFYPRGRFCTDNGAMIAYVGAQRLLAGER 322
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,475,824
Number of Sequences: 539616
Number of extensions: 1607111
Number of successful extensions: 5173
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 5164
Number of HSP's gapped (non-prelim): 14
length of query: 129
length of database: 191,569,459
effective HSP length: 95
effective length of query: 34
effective length of database: 140,305,939
effective search space: 4770401926
effective search space used: 4770401926
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)