Query 032981
Match_columns 129
No_of_seqs 123 out of 540
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 08:19:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032981.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032981hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2940 Predicted methyltransf 99.5 1.2E-14 2.6E-19 119.8 3.7 85 25-120 15-100 (325)
2 PRK10258 biotin biosynthesis p 99.1 3.2E-10 7E-15 89.0 6.0 62 49-112 2-63 (251)
3 TIGR02072 BioC biotin biosynth 98.3 7.3E-07 1.6E-11 67.6 4.3 54 60-113 2-56 (240)
4 TIGR02752 MenG_heptapren 2-hep 97.4 0.00021 4.5E-09 55.1 4.0 58 53-111 4-65 (231)
5 PLN02233 ubiquinone biosynthes 97.2 0.00074 1.6E-08 54.4 5.7 65 46-111 24-93 (261)
6 PRK05785 hypothetical protein; 97.2 0.00068 1.5E-08 53.6 5.3 62 51-112 6-72 (226)
7 PRK11088 rrmA 23S rRNA methylt 97.0 0.0032 7E-08 50.5 7.3 58 49-111 48-105 (272)
8 PRK11036 putative S-adenosyl-L 96.9 0.0038 8.3E-08 49.5 6.9 56 56-113 9-66 (255)
9 PF13489 Methyltransf_23: Meth 96.8 0.0016 3.4E-08 46.4 3.7 33 81-113 12-44 (161)
10 PRK14103 trans-aconitate 2-met 96.7 0.00074 1.6E-08 53.5 1.6 44 67-112 7-50 (255)
11 PRK01683 trans-aconitate 2-met 96.7 0.00085 1.8E-08 52.8 1.6 44 67-112 9-52 (258)
12 PRK00216 ubiE ubiquinone/menaq 96.5 0.0056 1.2E-07 46.5 5.3 61 51-113 8-73 (239)
13 PRK00274 ksgA 16S ribosomal RN 96.5 0.002 4.4E-08 52.1 3.0 50 62-113 15-64 (272)
14 PRK07580 Mg-protoporphyrin IX 96.1 0.023 5.1E-07 43.4 6.6 36 77-112 48-84 (230)
15 PLN02585 magnesium protoporphy 96.0 0.014 3.1E-07 49.0 5.6 63 51-113 88-166 (315)
16 PF01209 Ubie_methyltran: ubiE 95.9 0.0072 1.6E-07 48.4 3.0 59 52-112 5-68 (233)
17 TIGR02021 BchM-ChlM magnesium 95.9 0.015 3.2E-07 44.8 4.6 23 91-113 55-77 (219)
18 PRK15451 tRNA cmo(5)U34 methyl 95.8 0.03 6.5E-07 44.4 6.2 56 50-110 19-75 (247)
19 TIGR00740 methyltransferase, p 95.8 0.029 6.2E-07 43.9 5.9 21 91-111 53-73 (239)
20 COG2226 UbiE Methylase involve 95.7 0.015 3.3E-07 47.4 4.4 62 50-113 7-73 (238)
21 TIGR01934 MenG_MenH_UbiE ubiqu 95.7 0.02 4.3E-07 43.0 4.6 53 58-112 3-60 (223)
22 TIGR00755 ksgA dimethyladenosi 95.6 0.01 2.2E-07 47.2 3.0 39 74-114 14-52 (253)
23 TIGR00477 tehB tellurite resis 95.6 0.014 3.1E-07 44.8 3.5 34 78-113 19-52 (195)
24 TIGR03587 Pse_Me-ase pseudamin 95.5 0.024 5.2E-07 44.3 4.7 35 77-112 30-64 (204)
25 PF07021 MetW: Methionine bios 95.5 0.015 3.2E-07 46.4 3.4 22 91-112 13-34 (193)
26 PF12847 Methyltransf_18: Meth 95.5 0.012 2.6E-07 39.9 2.5 20 92-111 2-21 (112)
27 PRK11188 rrmJ 23S rRNA methylt 95.4 0.015 3.3E-07 45.5 3.3 32 80-112 41-72 (209)
28 KOG1541 Predicted protein carb 95.4 0.0097 2.1E-07 49.3 2.1 51 64-114 20-73 (270)
29 PRK14896 ksgA 16S ribosomal RN 95.3 0.016 3.5E-07 46.5 3.1 39 73-113 13-51 (258)
30 PRK08287 cobalt-precorrin-6Y C 95.3 0.017 3.7E-07 43.6 3.0 41 69-111 11-51 (187)
31 PF05175 MTS: Methyltransferas 95.3 0.042 9.1E-07 41.2 5.1 33 78-112 20-52 (170)
32 PLN02396 hexaprenyldihydroxybe 95.1 0.14 3E-06 43.1 8.4 22 92-113 132-153 (322)
33 COG4976 Predicted methyltransf 95.1 0.014 3.1E-07 48.6 2.3 32 80-111 113-145 (287)
34 COG4106 Tam Trans-aconitate me 95.0 0.017 3.6E-07 47.8 2.3 33 78-112 19-51 (257)
35 smart00650 rADc Ribosomal RNA 94.9 0.024 5.3E-07 42.2 3.0 33 78-112 2-34 (169)
36 TIGR00537 hemK_rel_arch HemK-r 94.9 0.02 4.4E-07 42.9 2.4 34 79-114 9-42 (179)
37 PLN02244 tocopherol O-methyltr 94.9 0.031 6.8E-07 46.7 3.8 23 90-112 117-139 (340)
38 TIGR02469 CbiT precorrin-6Y C5 94.9 0.027 5.9E-07 38.3 2.9 36 74-111 4-39 (124)
39 KOG1271 Methyltransferases [Ge 94.9 0.027 5.9E-07 45.7 3.2 26 88-113 64-89 (227)
40 TIGR02081 metW methionine bios 94.9 0.037 7.9E-07 42.1 3.8 22 91-112 13-34 (194)
41 PRK00517 prmA ribosomal protei 94.8 0.032 7E-07 44.4 3.5 33 81-113 109-141 (250)
42 PRK06202 hypothetical protein; 94.8 0.081 1.8E-06 41.2 5.6 21 90-110 59-79 (232)
43 PRK11207 tellurite resistance 94.7 0.031 6.8E-07 42.9 3.1 32 80-113 21-52 (197)
44 PF02353 CMAS: Mycolic acid cy 94.6 0.036 7.8E-07 45.5 3.3 39 72-112 45-83 (273)
45 PRK15068 tRNA mo(5)U34 methylt 94.5 0.038 8.2E-07 46.1 3.3 23 91-113 122-144 (322)
46 PRK13944 protein-L-isoaspartat 94.4 0.044 9.4E-07 42.4 3.3 34 76-111 59-92 (205)
47 TIGR00478 tly hemolysin TlyA f 94.3 0.067 1.4E-06 43.1 4.3 23 91-113 75-97 (228)
48 TIGR00080 pimt protein-L-isoas 94.3 0.061 1.3E-06 41.6 3.9 35 76-112 64-98 (215)
49 TIGR03438 probable methyltrans 94.2 0.062 1.4E-06 44.1 4.1 37 72-112 48-84 (301)
50 TIGR00438 rrmJ cell division p 94.2 0.045 9.8E-07 41.3 3.0 30 81-111 23-52 (188)
51 TIGR00138 gidB 16S rRNA methyl 94.1 0.061 1.3E-06 41.3 3.5 37 71-110 25-61 (181)
52 PF01728 FtsJ: FtsJ-like methy 94.0 0.051 1.1E-06 40.7 2.9 34 80-113 11-45 (181)
53 TIGR00452 methyltransferase, p 93.8 0.061 1.3E-06 45.2 3.2 22 92-113 122-143 (314)
54 PRK07402 precorrin-6B methylas 93.8 0.072 1.6E-06 40.5 3.3 38 71-110 22-59 (196)
55 PRK04148 hypothetical protein; 93.7 0.085 1.9E-06 39.7 3.6 37 75-113 2-39 (134)
56 COG2227 UbiG 2-polyprenyl-3-me 93.6 0.049 1.1E-06 44.9 2.4 23 91-113 59-81 (243)
57 PF13649 Methyltransf_25: Meth 93.5 0.053 1.2E-06 36.7 2.0 18 95-112 1-18 (101)
58 PRK13942 protein-L-isoaspartat 93.4 0.099 2.1E-06 40.8 3.7 35 75-111 62-96 (212)
59 PF08241 Methyltransf_11: Meth 93.4 0.027 5.8E-07 36.3 0.4 17 96-112 1-17 (95)
60 PRK00121 trmB tRNA (guanine-N( 93.4 0.059 1.3E-06 41.6 2.4 21 91-111 40-60 (202)
61 PTZ00338 dimethyladenosine tra 93.4 0.072 1.6E-06 44.2 3.0 41 71-113 17-58 (294)
62 TIGR00406 prmA ribosomal prote 93.3 0.095 2.1E-06 42.8 3.5 23 91-113 159-181 (288)
63 PRK03522 rumB 23S rRNA methylu 93.0 0.17 3.8E-06 41.7 4.7 38 76-113 156-195 (315)
64 PRK00107 gidB 16S rRNA methylt 92.9 0.15 3.3E-06 39.5 4.0 19 92-110 46-64 (187)
65 PRK12335 tellurite resistance 92.9 0.086 1.9E-06 42.8 2.7 23 91-113 120-142 (287)
66 COG2230 Cfa Cyclopropane fatty 92.7 0.11 2.4E-06 43.5 3.2 36 78-115 61-96 (283)
67 PRK00312 pcm protein-L-isoaspa 92.7 0.14 3E-06 39.3 3.5 37 73-111 62-98 (212)
68 PF06325 PrmA: Ribosomal prote 92.7 0.17 3.6E-06 42.4 4.2 26 85-110 155-180 (295)
69 PRK08317 hypothetical protein; 92.6 0.17 3.6E-06 38.0 3.8 21 91-111 19-39 (241)
70 PF13679 Methyltransf_32: Meth 92.5 0.17 3.6E-06 37.0 3.6 22 90-111 24-45 (141)
71 PF08242 Methyltransf_12: Meth 92.4 0.038 8.3E-07 37.0 0.0 16 96-111 1-16 (99)
72 KOG1270 Methyltransferases [Co 92.4 0.098 2.1E-06 44.0 2.4 22 93-114 91-112 (282)
73 TIGR00091 tRNA (guanine-N(7)-) 92.1 0.1 2.2E-06 39.9 2.1 22 91-112 16-37 (194)
74 TIGR03534 RF_mod_PrmC protein- 92.1 0.16 3.4E-06 39.2 3.1 22 90-111 86-107 (251)
75 PLN02490 MPBQ/MSBQ methyltrans 91.9 0.18 3.9E-06 43.0 3.5 36 75-111 98-133 (340)
76 COG2264 PrmA Ribosomal protein 91.9 0.17 3.7E-06 42.8 3.4 22 91-112 162-183 (300)
77 PLN02668 indole-3-acetate carb 91.9 0.12 2.5E-06 45.0 2.4 46 61-106 24-78 (386)
78 PF00398 RrnaAD: Ribosomal RNA 91.6 0.18 3.8E-06 40.6 3.1 40 72-113 12-52 (262)
79 PRK11705 cyclopropane fatty ac 91.6 0.26 5.7E-06 42.2 4.2 22 91-112 167-188 (383)
80 PLN02336 phosphoethanolamine N 91.2 0.16 3.4E-06 43.7 2.5 33 78-112 26-58 (475)
81 PLN02336 phosphoethanolamine N 91.2 0.2 4.4E-06 43.0 3.2 32 78-111 255-286 (475)
82 TIGR01983 UbiG ubiquinone bios 91.2 0.44 9.5E-06 36.3 4.7 20 92-111 46-65 (224)
83 PF01135 PCMT: Protein-L-isoas 91.2 0.28 6E-06 38.9 3.7 34 76-111 59-92 (209)
84 PF03848 TehB: Tellurite resis 91.1 0.18 4E-06 39.8 2.6 23 91-113 30-52 (192)
85 PRK04266 fibrillarin; Provisio 91.0 0.31 6.7E-06 38.9 3.9 22 91-112 72-93 (226)
86 PTZ00098 phosphoethanolamine N 90.8 0.27 5.8E-06 39.6 3.4 33 77-111 40-72 (263)
87 PRK14968 putative methyltransf 90.8 0.37 7.9E-06 35.3 3.8 22 91-112 23-44 (188)
88 PRK09489 rsmC 16S ribosomal RN 90.8 0.18 3.9E-06 42.7 2.4 21 92-112 197-217 (342)
89 TIGR02716 C20_methyl_CrtF C-20 90.6 0.33 7.1E-06 39.5 3.7 22 91-112 149-170 (306)
90 PRK13168 rumA 23S rRNA m(5)U19 90.5 0.45 9.7E-06 41.1 4.6 38 75-112 279-318 (443)
91 PRK15001 SAM-dependent 23S rib 90.2 0.16 3.5E-06 43.8 1.7 20 93-112 230-249 (378)
92 PRK00811 spermidine synthase; 90.0 0.26 5.5E-06 40.4 2.6 23 90-112 75-97 (283)
93 TIGR03533 L3_gln_methyl protei 89.9 0.4 8.6E-06 39.2 3.7 22 91-112 121-142 (284)
94 PRK11805 N5-glutamine S-adenos 89.9 0.28 6.1E-06 40.7 2.8 20 93-112 135-154 (307)
95 COG2890 HemK Methylase of poly 89.7 0.33 7.2E-06 39.9 3.1 20 94-113 113-132 (280)
96 PRK14967 putative methyltransf 89.7 0.45 9.8E-06 37.0 3.7 21 92-112 37-57 (223)
97 cd02440 AdoMet_MTases S-adenos 89.5 0.3 6.5E-06 30.4 2.2 18 94-111 1-18 (107)
98 COG2813 RsmC 16S RNA G1207 met 89.2 0.31 6.7E-06 41.3 2.6 32 80-113 149-180 (300)
99 COG2263 Predicted RNA methylas 89.2 0.49 1.1E-05 38.1 3.6 18 91-108 45-62 (198)
100 TIGR03840 TMPT_Se_Te thiopurin 88.9 0.33 7.2E-06 38.3 2.5 22 92-113 35-56 (213)
101 TIGR00536 hemK_fam HemK family 88.9 0.62 1.3E-05 37.8 4.1 20 93-112 116-135 (284)
102 COG2518 Pcm Protein-L-isoaspar 88.9 0.49 1.1E-05 38.2 3.4 34 77-112 60-93 (209)
103 PF09243 Rsm22: Mitochondrial 88.7 0.42 9E-06 39.0 3.0 28 77-106 21-48 (274)
104 PF08003 Methyltransf_9: Prote 88.6 0.48 1E-05 40.5 3.3 36 70-111 100-135 (315)
105 TIGR02085 meth_trns_rumB 23S r 88.2 0.91 2E-05 38.6 4.8 37 76-112 216-254 (374)
106 PRK05134 bifunctional 3-demeth 88.2 2.2 4.8E-05 32.8 6.6 22 91-112 48-69 (233)
107 COG0030 KsgA Dimethyladenosine 88.1 0.68 1.5E-05 38.4 3.8 42 71-114 11-53 (259)
108 PRK09328 N5-glutamine S-adenos 88.0 0.45 9.7E-06 37.4 2.7 22 91-112 108-129 (275)
109 PF07757 AdoMet_MTase: Predict 87.7 0.5 1.1E-05 34.9 2.5 24 90-113 57-80 (112)
110 PRK14966 unknown domain/N5-glu 87.5 0.49 1.1E-05 41.8 2.9 19 92-110 252-270 (423)
111 PLN02366 spermidine synthase 87.4 0.47 1E-05 39.7 2.6 26 90-115 90-115 (308)
112 PRK14121 tRNA (guanine-N(7)-)- 87.4 0.61 1.3E-05 40.7 3.3 22 91-112 122-143 (390)
113 TIGR00479 rumA 23S rRNA (uraci 87.2 1 2.2E-05 38.5 4.5 38 75-112 274-313 (431)
114 PRK00377 cbiT cobalt-precorrin 87.2 0.91 2E-05 34.6 3.9 36 72-109 23-58 (198)
115 PRK10901 16S rRNA methyltransf 86.6 0.41 8.8E-06 41.2 1.8 42 69-112 224-265 (427)
116 PRK10909 rsmD 16S rRNA m(2)G96 86.4 1.2 2.7E-05 34.9 4.3 17 92-108 54-70 (199)
117 TIGR03704 PrmC_rel_meth putati 86.1 1 2.2E-05 36.3 3.7 20 92-111 87-106 (251)
118 PRK01544 bifunctional N5-gluta 86.1 0.93 2E-05 40.3 3.9 19 92-110 139-157 (506)
119 PRK06922 hypothetical protein; 85.9 0.49 1.1E-05 44.1 2.1 21 91-111 418-438 (677)
120 TIGR02143 trmA_only tRNA (urac 85.8 1.3 2.8E-05 37.4 4.4 38 75-112 180-218 (353)
121 smart00138 MeTrc Methyltransfe 85.7 0.74 1.6E-05 37.3 2.8 33 70-104 80-112 (264)
122 PF05401 NodS: Nodulation prot 85.5 0.69 1.5E-05 37.2 2.5 26 87-112 39-64 (201)
123 COG2242 CobL Precorrin-6B meth 85.4 0.62 1.3E-05 37.1 2.2 37 72-110 17-53 (187)
124 PRK04457 spermidine synthase; 85.3 0.55 1.2E-05 38.0 1.9 21 91-111 66-86 (262)
125 PRK05031 tRNA (uracil-5-)-meth 85.1 1.6 3.5E-05 36.9 4.7 37 75-111 189-226 (362)
126 KOG2904 Predicted methyltransf 85.0 1.5 3.2E-05 37.7 4.3 35 75-109 131-166 (328)
127 PF05185 PRMT5: PRMT5 arginine 84.9 1.1 2.4E-05 39.5 3.7 37 73-109 166-204 (448)
128 PRK01581 speE spermidine synth 84.8 0.68 1.5E-05 40.4 2.3 25 90-114 149-173 (374)
129 KOG3191 Predicted N6-DNA-methy 84.7 0.99 2.1E-05 36.5 3.0 39 71-111 25-63 (209)
130 TIGR00417 speE spermidine synt 84.5 1.6 3.5E-05 35.2 4.2 23 90-112 71-93 (270)
131 PRK13255 thiopurine S-methyltr 84.3 0.86 1.9E-05 36.1 2.5 22 92-113 38-59 (218)
132 PRK13943 protein-L-isoaspartat 84.2 0.87 1.9E-05 38.4 2.7 21 91-111 80-100 (322)
133 PRK11873 arsM arsenite S-adeno 83.7 0.97 2.1E-05 35.8 2.6 19 91-109 77-95 (272)
134 PRK03612 spermidine synthase; 83.1 1.5 3.3E-05 38.9 3.9 25 90-114 296-320 (521)
135 KOG1499 Protein arginine N-met 82.1 0.96 2.1E-05 39.1 2.1 21 93-113 62-82 (346)
136 PF00891 Methyltransf_2: O-met 81.8 1.2 2.7E-05 34.6 2.5 20 91-110 100-119 (241)
137 PRK11760 putative 23S rRNA C24 81.7 2.4 5.1E-05 36.9 4.4 24 90-113 210-233 (357)
138 PF02390 Methyltransf_4: Putat 81.4 1.3 2.9E-05 34.4 2.5 21 91-111 17-37 (195)
139 PRK14902 16S rRNA methyltransf 81.0 0.9 2E-05 39.2 1.6 40 70-111 231-270 (444)
140 PHA03412 putative methyltransf 80.9 1.6 3.5E-05 35.9 3.0 19 92-110 50-68 (241)
141 PF05148 Methyltransf_8: Hypot 80.8 1.3 2.8E-05 36.2 2.3 20 93-112 74-93 (219)
142 TIGR00563 rsmB ribosomal RNA s 80.7 0.82 1.8E-05 39.3 1.3 40 70-111 219-258 (426)
143 PTZ00146 fibrillarin; Provisio 80.1 1.4 2.9E-05 37.2 2.3 37 75-111 115-152 (293)
144 PHA03411 putative methyltransf 79.6 1.8 3.9E-05 36.3 2.9 20 92-111 65-84 (279)
145 PRK11727 23S rRNA mA1618 methy 79.4 1.4 3E-05 37.4 2.2 21 91-111 114-134 (321)
146 KOG0820 Ribosomal RNA adenine 79.0 2.6 5.6E-05 36.0 3.7 37 76-114 45-81 (315)
147 COG4123 Predicted O-methyltran 78.9 2.1 4.5E-05 35.3 3.0 31 81-112 35-65 (248)
148 TIGR00095 RNA methyltransferas 78.4 1.7 3.6E-05 33.6 2.2 23 92-114 50-72 (189)
149 PLN02672 methionine S-methyltr 78.4 1.7 3.7E-05 42.5 2.8 20 93-112 120-139 (1082)
150 KOG1661 Protein-L-isoaspartate 78.3 2.3 5.1E-05 35.0 3.1 28 82-109 73-100 (237)
151 TIGR02987 met_A_Alw26 type II 78.0 3 6.4E-05 36.8 3.9 20 91-110 31-50 (524)
152 COG0293 FtsJ 23S rRNA methylas 78.0 2 4.3E-05 34.6 2.6 31 80-111 35-65 (205)
153 PF03141 Methyltransf_29: Puta 77.0 2.5 5.4E-05 38.3 3.2 22 92-113 118-139 (506)
154 PF01596 Methyltransf_3: O-met 76.3 10 0.00023 29.9 6.2 57 52-110 7-64 (205)
155 PF02527 GidB: rRNA small subu 75.0 3.9 8.5E-05 31.8 3.5 34 70-104 28-61 (184)
156 PF10294 Methyltransf_16: Puta 74.8 3 6.5E-05 31.5 2.7 24 89-112 43-66 (173)
157 KOG3010 Methyltransferase [Gen 74.6 3 6.5E-05 34.9 2.8 26 86-111 28-53 (261)
158 PF06080 DUF938: Protein of un 73.5 4.1 9E-05 32.7 3.3 16 94-109 28-43 (204)
159 PF03291 Pox_MCEL: mRNA cappin 73.0 2.2 4.9E-05 36.1 1.8 40 71-111 43-82 (331)
160 PLN03075 nicotianamine synthas 72.3 4.4 9.6E-05 34.1 3.4 18 91-108 123-140 (296)
161 TIGR01177 conserved hypothetic 71.3 4.1 8.9E-05 33.7 2.9 39 69-109 162-200 (329)
162 PRK14904 16S rRNA methyltransf 70.2 2.8 6E-05 36.3 1.8 36 72-109 233-268 (445)
163 COG0220 Predicted S-adenosylme 68.7 4.4 9.5E-05 32.7 2.5 19 93-111 50-68 (227)
164 PRK14901 16S rRNA methyltransf 68.0 3 6.4E-05 36.0 1.5 38 71-110 234-271 (434)
165 PRK15128 23S rRNA m(5)C1962 me 67.0 7.3 0.00016 33.7 3.7 33 72-108 205-237 (396)
166 COG0500 SmtA SAM-dependent met 67.0 3.9 8.4E-05 25.5 1.5 12 95-106 52-63 (257)
167 PRK14903 16S rRNA methyltransf 66.9 3.4 7.3E-05 35.9 1.6 40 69-110 217-256 (431)
168 PLN02781 Probable caffeoyl-CoA 66.1 8.6 0.00019 30.5 3.7 27 81-108 59-85 (234)
169 TIGR00446 nop2p NOL1/NOP2/sun 66.0 5.2 0.00011 32.2 2.5 38 71-110 53-90 (264)
170 KOG4589 Cell division protein 64.3 5 0.00011 32.9 2.0 29 82-111 61-89 (232)
171 PF05219 DREV: DREV methyltran 63.0 6 0.00013 33.2 2.3 21 91-111 94-114 (265)
172 PF07091 FmrO: Ribosomal RNA m 61.9 6.6 0.00014 32.6 2.4 19 91-109 105-123 (251)
173 COG0421 SpeE Spermidine syntha 61.8 6.5 0.00014 32.8 2.3 42 72-117 60-102 (282)
174 COG0357 GidB Predicted S-adeno 61.4 13 0.00028 30.0 3.9 31 70-104 47-80 (215)
175 PF01564 Spermine_synth: Sperm 61.0 7.9 0.00017 31.1 2.6 24 91-114 76-99 (246)
176 PLN02823 spermine synthase 58.6 7.3 0.00016 33.1 2.2 22 91-112 103-124 (336)
177 KOG2920 Predicted methyltransf 58.4 6.7 0.00014 33.1 1.9 47 72-121 100-146 (282)
178 COG1189 Predicted rRNA methyla 58.4 15 0.00033 30.5 3.9 36 78-113 64-101 (245)
179 KOG2899 Predicted methyltransf 56.1 8.3 0.00018 32.6 2.0 21 91-111 58-78 (288)
180 COG3963 Phospholipid N-methylt 55.9 9.4 0.0002 30.7 2.2 22 92-113 49-70 (194)
181 PF02636 Methyltransf_28: Puta 54.9 21 0.00045 28.3 4.1 32 78-109 3-36 (252)
182 TIGR03439 methyl_EasF probable 53.9 21 0.00047 30.2 4.2 32 72-107 61-92 (319)
183 PRK01544 bifunctional N5-gluta 52.3 13 0.00027 33.2 2.7 23 89-111 345-367 (506)
184 PLN02476 O-methyltransferase 52.0 43 0.00094 27.9 5.7 20 91-110 118-137 (278)
185 PF05724 TPMT: Thiopurine S-me 51.7 14 0.00031 29.2 2.7 22 92-113 38-59 (218)
186 PRK00050 16S rRNA m(4)C1402 me 51.4 15 0.00033 30.8 2.9 21 92-112 20-40 (296)
187 PRK11783 rlmL 23S rRNA m(2)G24 50.9 18 0.0004 33.4 3.6 21 92-112 539-559 (702)
188 PF12242 Eno-Rase_NADH_b: NAD( 50.7 30 0.00064 24.1 3.8 16 92-107 39-54 (78)
189 PF02384 N6_Mtase: N-6 DNA Met 50.1 19 0.00042 29.0 3.3 36 72-109 29-64 (311)
190 PF05958 tRNA_U5-meth_tr: tRNA 49.7 24 0.00052 29.8 3.8 38 75-112 179-217 (352)
191 PRK04338 N(2),N(2)-dimethylgua 48.8 13 0.00028 32.1 2.1 20 92-111 58-77 (382)
192 PF08123 DOT1: Histone methyla 48.2 22 0.00048 28.1 3.2 28 77-106 30-57 (205)
193 PF02086 MethyltransfD12: D12 47.7 12 0.00027 28.9 1.7 49 78-128 9-63 (260)
194 KOG4300 Predicted methyltransf 47.4 10 0.00022 31.5 1.2 18 93-110 78-95 (252)
195 PF01234 NNMT_PNMT_TEMT: NNMT/ 46.4 25 0.00055 29.0 3.4 21 91-112 56-76 (256)
196 PF05891 Methyltransf_PK: AdoM 46.0 16 0.00035 29.7 2.2 20 90-109 54-73 (218)
197 PRK00536 speE spermidine synth 44.9 21 0.00047 29.4 2.8 39 70-112 54-93 (262)
198 COG1565 Uncharacterized conser 44.7 40 0.00087 29.6 4.5 40 71-110 56-96 (370)
199 KOG3178 Hydroxyindole-O-methyl 44.0 28 0.0006 30.2 3.4 20 91-110 177-196 (342)
200 PRK13256 thiopurine S-methyltr 44.0 21 0.00045 28.8 2.5 37 70-113 29-65 (226)
201 KOG3420 Predicted RNA methylas 41.3 26 0.00056 27.8 2.6 17 91-107 48-64 (185)
202 PF03602 Cons_hypoth95: Conser 40.2 33 0.0007 26.4 3.0 36 71-110 26-62 (183)
203 PF03492 Methyltransf_7: SAM d 38.5 21 0.00045 30.2 1.8 18 92-109 17-34 (334)
204 KOG3987 Uncharacterized conser 38.3 19 0.00041 30.1 1.5 22 90-111 111-132 (288)
205 KOG2651 rRNA adenine N-6-methy 36.1 43 0.00094 30.2 3.4 36 79-114 139-176 (476)
206 COG2519 GCD14 tRNA(1-methylade 35.5 23 0.00049 29.6 1.6 20 91-110 94-113 (256)
207 TIGR00197 yjeF_nterm yjeF N-te 34.9 1.9E+02 0.0041 22.5 6.6 53 49-103 2-55 (205)
208 KOG3045 Predicted RNA methylas 34.6 38 0.00082 29.1 2.8 16 92-107 181-196 (325)
209 PF07942 N2227: N2227-like pro 33.9 45 0.00097 27.8 3.1 42 71-112 34-77 (270)
210 PRK11933 yebU rRNA (cytosine-C 33.7 27 0.00058 31.1 1.8 40 69-109 91-131 (470)
211 KOG3115 Methyltransferase-like 33.5 22 0.00049 29.5 1.2 17 94-110 63-79 (249)
212 KOG1540 Ubiquinone biosynthesi 33.3 53 0.0011 28.1 3.4 55 53-109 59-118 (296)
213 PF01739 CheR: CheR methyltran 32.7 21 0.00045 28.0 0.9 34 69-104 11-44 (196)
214 KOG1500 Protein arginine N-met 32.7 36 0.00077 30.5 2.4 17 93-109 179-195 (517)
215 PF10237 N6-adenineMlase: Prob 31.9 57 0.0012 25.1 3.1 46 75-122 9-56 (162)
216 KOG2361 Predicted methyltransf 31.1 20 0.00044 30.1 0.6 21 92-112 72-93 (264)
217 KOG4058 Uncharacterized conser 29.7 55 0.0012 26.1 2.8 30 78-107 58-88 (199)
218 COG5459 Predicted rRNA methyla 29.6 37 0.00079 30.5 1.9 32 76-109 100-131 (484)
219 PF12147 Methyltransf_20: Puta 29.0 64 0.0014 27.8 3.2 24 91-114 135-159 (311)
220 KOG1975 mRNA cap methyltransfe 28.5 30 0.00066 30.4 1.2 21 91-111 117-137 (389)
221 PF05206 TRM13: Methyltransfer 27.8 63 0.0014 26.6 2.9 20 92-111 19-38 (259)
222 PF08704 GCD14: tRNA methyltra 27.5 55 0.0012 26.7 2.5 20 91-110 40-59 (247)
223 COG4262 Predicted spermidine s 26.8 43 0.00093 30.2 1.9 29 90-118 288-316 (508)
224 COG2265 TrmA SAM-dependent met 25.9 1E+02 0.0023 27.1 4.1 38 75-112 275-314 (432)
225 KOG1098 Putative SAM-dependent 25.7 34 0.00074 32.5 1.1 26 92-117 45-70 (780)
226 KOG0821 Predicted ribosomal RN 23.6 1.5E+02 0.0033 25.2 4.4 56 52-111 13-70 (326)
227 COG4076 Predicted RNA methylas 23.3 93 0.002 25.8 3.1 16 93-108 34-49 (252)
228 PLN02589 caffeoyl-CoA O-methyl 23.0 2.5E+02 0.0054 22.8 5.5 19 91-109 79-97 (247)
229 PLN02918 pyridoxine (pyridoxam 22.2 2.6E+02 0.0056 25.7 6.0 68 43-112 83-161 (544)
230 COG0062 Uncharacterized conser 21.6 3.7E+02 0.0081 21.5 6.2 62 51-113 5-76 (203)
231 KOG0822 Protein kinase inhibit 21.2 1.1E+02 0.0023 28.8 3.3 39 70-108 345-384 (649)
232 PRK10565 putative carbohydrate 20.9 4.8E+02 0.01 23.4 7.3 53 49-103 16-70 (508)
233 TIGR01381 E1_like_apg7 E1-like 20.2 1.1E+02 0.0024 28.9 3.2 44 74-118 320-365 (664)
No 1
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.50 E-value=1.2e-14 Score=119.83 Aligned_cols=85 Identities=51% Similarity=0.801 Sum_probs=73.2
Q ss_pred eecccccccccCCCccCCCCCCccCcCCHHHHHHHHhHhhhcCCC-ChHHHHHHHHHHHhhhHhhhccCCeEEEEccCcc
Q 032981 25 ALVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTRP-NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLE 103 (129)
Q Consensus 25 ~~~~~r~~~~~~~~~~~~~~~~~~~IFDR~~vr~~r~RAA~~y~~-~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG 103 (129)
+++.+-+|+|. +...||||+.++.||+||+...+. .+||++||+++|+||+.++++.|+.++||||+-|
T Consensus 15 ~~l~sls~~t~----------s~~~iFDR~~KR~qrdrAa~~~d~k~dylkeeig~rlaDrvfD~kk~fp~a~diGcs~G 84 (325)
T KOG2940|consen 15 TFLASLSFSTE----------SKVKIFDRDLKRIQRDRAAWLSDQKNDYLKEEIGDRLADRVFDCKKSFPTAFDIGCSLG 84 (325)
T ss_pred HHHHHhhccch----------hhhHhhhhHHHHHHHhHHhhcchhhhhHHHHHHHHHHHHHHHHHhhhCcceeecccchh
Confidence 44555566554 446799999999999999987554 5999999999999999999999999999999999
Q ss_pred HHHHHHhccCCcchhHH
Q 032981 104 AVRRLLRGRVVLQKENF 120 (129)
Q Consensus 104 ~l~~~L~~~g~v~~l~~ 120 (129)
++.+.|.+.+ |+++|+
T Consensus 85 ~v~rhl~~e~-vekli~ 100 (325)
T KOG2940|consen 85 AVKRHLRGEG-VEKLIM 100 (325)
T ss_pred hhhHHHHhcc-hhheee
Confidence 9999999864 888764
No 2
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.05 E-value=3.2e-10 Score=89.03 Aligned_cols=62 Identities=21% Similarity=0.208 Sum_probs=55.7
Q ss_pred CcCCHHHHHHHHhHhhhcCCCChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981 49 SIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 49 ~IFDR~~vr~~r~RAA~~y~~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
...|+++|+++|+||+.+|++++.+|+++++.|.++|.. ..+.+|||+|||+|.++..|.+.
T Consensus 2 ~~~~k~~i~~~F~~aa~~Y~~~~~~q~~~a~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~ 63 (251)
T PRK10258 2 ATVNKQAIAAAFGRAAAHYEQHAELQRQSADALLAMLPQ--RKFTHVLDAGCGPGWMSRYWRER 63 (251)
T ss_pred CccCHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhcCc--cCCCeEEEeeCCCCHHHHHHHHc
Confidence 458999999999999999999999999999999999875 35889999999999999888654
No 3
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.31 E-value=7.3e-07 Score=67.61 Aligned_cols=54 Identities=20% Similarity=0.144 Sum_probs=46.0
Q ss_pred HhHhhhcCCCChHHHHHHHHHHHhhhHhhh-ccCCeEEEEccCccHHHHHHhccC
Q 032981 60 RDRAAWLTRPNDSFVDAVAENLLDRLEDCR-KTFPTALCLGGSLEAVRRLLRGRV 113 (129)
Q Consensus 60 r~RAA~~y~~~~fLq~eVAerL~DRL~~Ik-R~f~~aLDLGcgtG~l~~~L~~~g 113 (129)
|+||+..|++++.+|++++..|.+.+.... ..+.+|||+|||+|.++..|.+.+
T Consensus 2 ~~~~~~~y~~~~~~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~ 56 (240)
T TIGR02072 2 FNKAAKTYDRHAKIQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF 56 (240)
T ss_pred cchhhhchhHHHHHHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC
Confidence 678888899999999999999999998754 345789999999999988886544
No 4
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=97.38 E-value=0.00021 Score=55.14 Aligned_cols=58 Identities=12% Similarity=-0.072 Sum_probs=38.5
Q ss_pred HHHHHHHHhHhhhcCCCChH---HHHHHHHHHHhhhHhhhc-cCCeEEEEccCccHHHHHHhc
Q 032981 53 RHLKRKQRDRAAWLTRPNDS---FVDAVAENLLDRLEDCRK-TFPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 53 R~~vr~~r~RAA~~y~~~~f---Lq~eVAerL~DRL~~IkR-~f~~aLDLGcgtG~l~~~L~~ 111 (129)
+..++..|++++..||..+- ++.....+ .+.+..+.. ...+|||+|||+|.++..+.+
T Consensus 4 ~~~~~~~f~~~a~~yd~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~ 65 (231)
T TIGR02752 4 EERVHKVFEKIYKKYDRMNSVISFQRHKKWR-KDTMKRMNVQAGTSALDVCCGTADWSIALAE 65 (231)
T ss_pred HHHHHHHHHHhhhHHhHHHHHhcCCchHHHH-HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHH
Confidence 67889999999998887432 22333222 223333332 356999999999999887753
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=97.22 E-value=0.00074 Score=54.36 Aligned_cols=65 Identities=12% Similarity=0.016 Sum_probs=43.3
Q ss_pred CccCcCCH-HHHHHHHhHhhhcCCCC-hHH---HHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981 46 SRVSIFDR-HLKRKQRDRAAWLTRPN-DSF---VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 46 ~~~~IFDR-~~vr~~r~RAA~~y~~~-~fL---q~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~ 111 (129)
....+.|= +.++..|+++|..||.. +++ +++...++..++..++ ...++||+|||||.++..|.+
T Consensus 24 ~~~~~~~~~~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~~-~~~~VLDlGcGtG~~~~~la~ 93 (261)
T PLN02233 24 RRRDVVKCANERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGAK-MGDRVLDLCCGSGDLAFLLSE 93 (261)
T ss_pred hcCChhhhHHHHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCCC-CCCEEEEECCcCCHHHHHHHH
Confidence 33445554 45888999999988863 333 3444454443333433 467999999999998887754
No 6
>PRK05785 hypothetical protein; Provisional
Probab=97.21 E-value=0.00068 Score=53.60 Aligned_cols=62 Identities=3% Similarity=-0.094 Sum_probs=38.1
Q ss_pred CCHHHHHHHHhHhhhcCCCChH-H----HHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981 51 FDRHLKRKQRDRAAWLTRPNDS-F----VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 51 FDR~~vr~~r~RAA~~y~~~~f-L----q~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
.+.+.++..|++.|..||...- + ...--..+.+.+........+|||||||||.++..|.+.
T Consensus 6 ~~~~~v~~~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~ 72 (226)
T PRK05785 6 ATWEELQEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKV 72 (226)
T ss_pred ccHHHHHHHHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHh
Confidence 4566778888888877765321 1 011112233333222223679999999999999888665
No 7
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=96.99 E-value=0.0032 Score=50.52 Aligned_cols=58 Identities=19% Similarity=0.153 Sum_probs=39.4
Q ss_pred CcCCHHHHHHHHhHhhhcCCCChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981 49 SIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 49 ~IFDR~~vr~~r~RAA~~y~~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~ 111 (129)
+-.++..+..++ +-. ....++.+++.+++.|.+.+. ....+|||+|||+|.++..|.+
T Consensus 48 ~~d~~~~~~ar~-~fl-~~g~y~~l~~~i~~~l~~~l~---~~~~~vLDiGcG~G~~~~~l~~ 105 (272)
T PRK11088 48 PGDNKEMMQARR-AFL-DAGHYQPLRDAVANLLAERLD---EKATALLDIGCGEGYYTHALAD 105 (272)
T ss_pred CCcCHHHHHHHH-HHH-HCCChHHHHHHHHHHHHHhcC---CCCCeEEEECCcCCHHHHHHHH
Confidence 346666665543 211 123366788888888876553 3567899999999999887753
No 8
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.88 E-value=0.0038 Score=49.47 Aligned_cols=56 Identities=13% Similarity=-0.056 Sum_probs=34.0
Q ss_pred HHHHHhHhhhcCCC--ChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981 56 KRKQRDRAAWLTRP--NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV 113 (129)
Q Consensus 56 vr~~r~RAA~~y~~--~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g 113 (129)
++.+|++.. |.. ..--+.-+-.++.+-|..+.....+|||+|||+|.++..|.+.+
T Consensus 9 ~a~~f~~~~--y~~~~g~~r~~~~~~~~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~g 66 (255)
T PRK11036 9 IAEKFSRNI--YGTTKGQIRQAILWQDLDRLLAELPPRPLRVLDAGGGEGQTAIKLAELG 66 (255)
T ss_pred HHHHHHHhc--cCCCccHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHcC
Confidence 556666644 332 12222223334444445554567899999999999998886654
No 9
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=96.80 E-value=0.0016 Score=46.38 Aligned_cols=33 Identities=30% Similarity=0.220 Sum_probs=24.8
Q ss_pred HHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981 81 LLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV 113 (129)
Q Consensus 81 L~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g 113 (129)
+..++........+|||+|||+|.++..|.+.+
T Consensus 12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~ 44 (161)
T PF13489_consen 12 LLERLLPRLKPGKRVLDIGCGTGSFLRALAKRG 44 (161)
T ss_dssp HHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTT
T ss_pred HHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhC
Confidence 344555434568899999999999999996653
No 10
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=96.72 E-value=0.00074 Score=53.46 Aligned_cols=44 Identities=18% Similarity=0.112 Sum_probs=32.2
Q ss_pred CCCChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981 67 TRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 67 y~~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
|...+..+.....+|.+++.. ....+|||||||+|.++..|...
T Consensus 7 y~~~~~~~~~~~~~ll~~l~~--~~~~~vLDlGcG~G~~~~~l~~~ 50 (255)
T PRK14103 7 YLAFADHRGRPFYDLLARVGA--ERARRVVDLGCGPGNLTRYLARR 50 (255)
T ss_pred HHHHHhHhhCHHHHHHHhCCC--CCCCEEEEEcCCCCHHHHHHHHH
Confidence 444455555667778777654 34689999999999999888654
No 11
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=96.67 E-value=0.00085 Score=52.78 Aligned_cols=44 Identities=20% Similarity=0.080 Sum_probs=32.0
Q ss_pred CCCChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981 67 TRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 67 y~~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
|+.....+...++++.+.+.. ....+|||||||+|.++..|.+.
T Consensus 9 Y~~~~~~~~~~~~~ll~~~~~--~~~~~vLDiGcG~G~~~~~la~~ 52 (258)
T PRK01683 9 YLKFEDERTRPARDLLARVPL--ENPRYVVDLGCGPGNSTELLVER 52 (258)
T ss_pred HHHHHHHhhcHHHHHHhhCCC--cCCCEEEEEcccCCHHHHHHHHH
Confidence 444445666678888877743 24679999999999998887543
No 12
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=96.54 E-value=0.0056 Score=46.50 Aligned_cols=61 Identities=15% Similarity=-0.065 Sum_probs=40.9
Q ss_pred CCHHHHHHHHhHhhhcCCCC-hHH----HHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981 51 FDRHLKRKQRDRAAWLTRPN-DSF----VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV 113 (129)
Q Consensus 51 FDR~~vr~~r~RAA~~y~~~-~fL----q~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g 113 (129)
=+++.++..++.++..|+.. .++ +......+.+.+.. . ...++||+|||+|.++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~vldiG~G~G~~~~~l~~~~ 73 (239)
T PRK00216 8 EKQEKVAEMFDSIAPKYDLMNDLLSFGLHRVWRRKTIKWLGV-R-PGDKVLDLACGTGDLAIALAKAV 73 (239)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHhcCCcHHHHHHHHHHhCC-C-CCCeEEEeCCCCCHHHHHHHHHc
Confidence 36888889999988877642 222 33444455554432 2 45799999999999988775443
No 13
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=96.53 E-value=0.002 Score=52.12 Aligned_cols=50 Identities=20% Similarity=0.164 Sum_probs=34.7
Q ss_pred HhhhcCCCChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981 62 RAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV 113 (129)
Q Consensus 62 RAA~~y~~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g 113 (129)
++...+.+.-.....+++.+.+.+.. .....|||+|||+|.++..|.+.+
T Consensus 15 ~~~k~~gq~fl~~~~i~~~i~~~l~~--~~~~~VLEiG~G~G~lt~~L~~~~ 64 (272)
T PRK00274 15 RAKKSLGQNFLIDENILDKIVDAAGP--QPGDNVLEIGPGLGALTEPLLERA 64 (272)
T ss_pred CCCcccCcCcCCCHHHHHHHHHhcCC--CCcCeEEEeCCCccHHHHHHHHhC
Confidence 44444555433455678888876643 245789999999999999886654
No 14
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=96.10 E-value=0.023 Score=43.37 Aligned_cols=36 Identities=19% Similarity=0.106 Sum_probs=23.5
Q ss_pred HHHHHHhhhHhh-hccCCeEEEEccCccHHHHHHhcc
Q 032981 77 VAENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 77 VAerL~DRL~~I-kR~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
+.+.+.+.+... .....+|||+|||+|.++..|.+.
T Consensus 48 ~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~ 84 (230)
T PRK07580 48 MRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARR 84 (230)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHc
Confidence 344444444331 123568999999999998888543
No 15
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=96.04 E-value=0.014 Score=48.95 Aligned_cols=63 Identities=14% Similarity=-0.002 Sum_probs=37.2
Q ss_pred CCHHHHHHHHhHhh-----hcCCCChHH----------HHHHHHHHHhhhHhh-hccCCeEEEEccCccHHHHHHhccC
Q 032981 51 FDRHLKRKQRDRAA-----WLTRPNDSF----------VDAVAENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRGRV 113 (129)
Q Consensus 51 FDR~~vr~~r~RAA-----~~y~~~~fL----------q~eVAerL~DRL~~I-kR~f~~aLDLGcgtG~l~~~L~~~g 113 (129)
=|+..|+..|++.+ ..|+..+.+ ++++.+.+.+-+... .....++||||||+|.++..|.+.+
T Consensus 88 ~~~~~V~~~Fd~~a~~~w~~iy~~~d~v~~~~l~~~~~~~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g 166 (315)
T PLN02585 88 DDKEVVREYFNTTGFERWRKIYGETDEVNKVQLDIRLGHAQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEG 166 (315)
T ss_pred HHHHHHHHHhcccchhhHHHhcCCccccCceeeecccChHHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCC
Confidence 36677778888753 224432211 123344444444322 1235699999999999998886654
No 16
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=95.87 E-value=0.0072 Score=48.39 Aligned_cols=59 Identities=20% Similarity=0.032 Sum_probs=19.0
Q ss_pred CHHHHHHHHhHhhhcCCCCh----HH-HHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981 52 DRHLKRKQRDRAAWLTRPND----SF-VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 52 DR~~vr~~r~RAA~~y~~~~----fL-q~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
..+.|++-|++.|..||... +- ++..-+.+.+.+. .+...+|||+|||||.++..|.+.
T Consensus 5 k~~~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~--~~~g~~vLDv~~GtG~~~~~l~~~ 68 (233)
T PF01209_consen 5 KEQYVRKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLG--LRPGDRVLDVACGTGDVTRELARR 68 (233)
T ss_dssp --------------------------------SHHHHHHT----S--EEEEET-TTSHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHhCCCccccCCcHHHHHHHHHHhccC--CCCCCEEEEeCCChHHHHHHHHHH
Confidence 44567778888888777632 21 2222233333321 245779999999999999988653
No 17
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=95.86 E-value=0.015 Score=44.81 Aligned_cols=23 Identities=17% Similarity=-0.061 Sum_probs=19.3
Q ss_pred cCCeEEEEccCccHHHHHHhccC
Q 032981 91 TFPTALCLGGSLEAVRRLLRGRV 113 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L~~~g 113 (129)
...++||+|||+|.++..+.+.+
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~ 77 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRG 77 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCC
Confidence 46789999999999998886543
No 18
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=95.77 E-value=0.03 Score=44.40 Aligned_cols=56 Identities=16% Similarity=0.121 Sum_probs=32.9
Q ss_pred cCCHHHHHHHHhHhhh-cCCCChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHh
Q 032981 50 IFDRHLKRKQRDRAAW-LTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLR 110 (129)
Q Consensus 50 IFDR~~vr~~r~RAA~-~y~~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~ 110 (129)
-||..... .++.... .-..++.+++.++.- ..+. .....+|||||||+|..+..|.
T Consensus 19 ~f~~~~a~-~yd~~~~~~~p~y~~~~~~~~~~-~~~~---~~~~~~vLDlGcGtG~~~~~l~ 75 (247)
T PRK15451 19 TFDERVAE-VFPDMIQRSVPGYSNIISMIGML-AERF---VQPGTQVYDLGCSLGAATLSVR 75 (247)
T ss_pred ccChHHHH-hhhhHHHhcCCChHHHHHHHHHH-HHHh---CCCCCEEEEEcccCCHHHHHHH
Confidence 57764333 4543332 233456666665543 3222 2245789999999999876664
No 19
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=95.75 E-value=0.029 Score=43.89 Aligned_cols=21 Identities=24% Similarity=0.029 Sum_probs=17.1
Q ss_pred cCCeEEEEccCccHHHHHHhc
Q 032981 91 TFPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L~~ 111 (129)
...+|||||||+|..+..+.+
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~ 73 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARR 73 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHH
Confidence 456899999999998876643
No 20
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=95.74 E-value=0.015 Score=47.40 Aligned_cols=62 Identities=15% Similarity=-0.022 Sum_probs=41.7
Q ss_pred cCCHHHHHHHHhHhhhcCCCCh-----HHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981 50 IFDRHLKRKQRDRAAWLTRPND-----SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV 113 (129)
Q Consensus 50 IFDR~~vr~~r~RAA~~y~~~~-----fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g 113 (129)
......|..-|++.|..||..+ =+++.-=+.+.+++.. + ...++||+|||||-++-.+.+..
T Consensus 7 ~~k~~~v~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~-~-~g~~vLDva~GTGd~a~~~~k~~ 73 (238)
T COG2226 7 DEKQEKVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGI-K-PGDKVLDVACGTGDMALLLAKSV 73 (238)
T ss_pred cccHHHHHHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhCC-C-CCCEEEEecCCccHHHHHHHHhc
Confidence 3456778888888887776543 2333333344443322 2 68899999999999999887653
No 21
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=95.70 E-value=0.02 Score=43.02 Aligned_cols=53 Identities=9% Similarity=-0.106 Sum_probs=32.9
Q ss_pred HHHhHhhhcCCCChHHH-----HHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981 58 KQRDRAAWLTRPNDSFV-----DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 58 ~~r~RAA~~y~~~~fLq-----~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
.+|+..+.+|+..+-.. ....+.+.+.+.. ....+|||+|||+|.++..+.+.
T Consensus 3 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vldiG~G~G~~~~~~~~~ 60 (223)
T TIGR01934 3 EMFDRIAPKYDLLNDLLSFGLHRLWRRRAVKLIGV--FKGQKVLDVACGTGDLAIELAKS 60 (223)
T ss_pred hHHHHHHhhhhHHHHHHhcccHHHHHHHHHHHhcc--CCCCeEEEeCCCCChhHHHHHHh
Confidence 46777777777754332 2222333333222 14679999999999998877543
No 22
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=95.64 E-value=0.01 Score=47.23 Aligned_cols=39 Identities=18% Similarity=0.171 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccCC
Q 032981 74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRVV 114 (129)
Q Consensus 74 q~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g~ 114 (129)
-..+++.+.+-+.. ...+.|||+|||+|.++..|.+.+.
T Consensus 14 d~~i~~~i~~~~~~--~~~~~VLEiG~G~G~lt~~L~~~~~ 52 (253)
T TIGR00755 14 DESVIQKIVEAANV--LEGDVVLEIGPGLGALTEPLLKRAK 52 (253)
T ss_pred CHHHHHHHHHhcCC--CCcCEEEEeCCCCCHHHHHHHHhCC
Confidence 34666777765543 2467999999999999999976543
No 23
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=95.58 E-value=0.014 Score=44.78 Aligned_cols=34 Identities=12% Similarity=-0.038 Sum_probs=24.1
Q ss_pred HHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981 78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV 113 (129)
Q Consensus 78 AerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g 113 (129)
.+.+.+.+... .+.+|||+|||+|..+..|.+.+
T Consensus 19 ~~~l~~~~~~~--~~~~vLDiGcG~G~~a~~la~~g 52 (195)
T TIGR00477 19 HSAVREAVKTV--APCKTLDLGCGQGRNSLYLSLAG 52 (195)
T ss_pred hHHHHHHhccC--CCCcEEEeCCCCCHHHHHHHHCC
Confidence 33444444332 46799999999999999887654
No 24
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=95.54 E-value=0.024 Score=44.30 Aligned_cols=35 Identities=14% Similarity=0.104 Sum_probs=23.9
Q ss_pred HHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981 77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 77 VAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
..+.+..-|..+. ...+|||+|||+|..+..|...
T Consensus 30 ~~~~~~~~l~~~~-~~~~VLDiGCG~G~~~~~L~~~ 64 (204)
T TIGR03587 30 KLAMFARALNRLP-KIASILELGANIGMNLAALKRL 64 (204)
T ss_pred HHHHHHHHHHhcC-CCCcEEEEecCCCHHHHHHHHh
Confidence 3444444444433 4678999999999999888654
No 25
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=95.50 E-value=0.015 Score=46.45 Aligned_cols=22 Identities=18% Similarity=0.099 Sum_probs=19.3
Q ss_pred cCCeEEEEccCccHHHHHHhcc
Q 032981 91 TFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
.-.+|||||||+|.+...|.+.
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~ 34 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDE 34 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHh
Confidence 4679999999999999999764
No 26
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=95.46 E-value=0.012 Score=39.85 Aligned_cols=20 Identities=20% Similarity=0.012 Sum_probs=16.9
Q ss_pred CCeEEEEccCccHHHHHHhc
Q 032981 92 FPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 92 f~~aLDLGcgtG~l~~~L~~ 111 (129)
..+|||||||+|.++..|.+
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~ 21 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALAR 21 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHH
T ss_pred CCEEEEEcCcCCHHHHHHHh
Confidence 35799999999999888755
No 27
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=95.43 E-value=0.015 Score=45.50 Aligned_cols=32 Identities=9% Similarity=-0.028 Sum_probs=22.6
Q ss_pred HHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981 80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 80 rL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
++.++...++ ....|||||||||.++..+.+.
T Consensus 41 ~~~~~~~~~~-~~~~VLDlG~GtG~~t~~l~~~ 72 (209)
T PRK11188 41 EIQQSDKLFK-PGMTVVDLGAAPGGWSQYAVTQ 72 (209)
T ss_pred HHHHHhccCC-CCCEEEEEcccCCHHHHHHHHH
Confidence 3444444444 3578999999999999877543
No 28
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=95.39 E-value=0.0097 Score=49.34 Aligned_cols=51 Identities=18% Similarity=-0.039 Sum_probs=38.9
Q ss_pred hhcCCCC---hHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccCC
Q 032981 64 AWLTRPN---DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRVV 114 (129)
Q Consensus 64 A~~y~~~---~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g~ 114 (129)
|..|.+. -.+|.+++++-+|-|+.-.-...-|||||||+|.....|...|.
T Consensus 20 A~kYt~nsri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh 73 (270)
T KOG1541|consen 20 APKYTQNSRIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGH 73 (270)
T ss_pred hhhccccceeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCc
Confidence 3445553 48899999999988866443467899999999999988876653
No 29
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=95.31 E-value=0.016 Score=46.50 Aligned_cols=39 Identities=23% Similarity=0.253 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981 73 FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV 113 (129)
Q Consensus 73 Lq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g 113 (129)
+-..+++.+.+.+... ....|||+|||+|.++..|.+.+
T Consensus 13 ~d~~~~~~iv~~~~~~--~~~~VLEIG~G~G~lt~~L~~~~ 51 (258)
T PRK14896 13 IDDRVVDRIVEYAEDT--DGDPVLEIGPGKGALTDELAKRA 51 (258)
T ss_pred CCHHHHHHHHHhcCCC--CcCeEEEEeCccCHHHHHHHHhC
Confidence 3556777777766432 45789999999999999986653
No 30
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=95.27 E-value=0.017 Score=43.56 Aligned_cols=41 Identities=15% Similarity=-0.006 Sum_probs=30.8
Q ss_pred CChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981 69 PNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 69 ~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~ 111 (129)
.....++++.+-+.+.|.. . ...++||+|||+|.++-.+..
T Consensus 11 ~~~~~~~~~r~~~~~~l~~-~-~~~~vLDiG~G~G~~~~~la~ 51 (187)
T PRK08287 11 KVPMTKEEVRALALSKLEL-H-RAKHLIDVGAGTGSVSIEAAL 51 (187)
T ss_pred CCCCchHHHHHHHHHhcCC-C-CCCEEEEECCcCCHHHHHHHH
Confidence 4557777888777777643 2 467999999999999877754
No 31
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=95.27 E-value=0.042 Score=41.23 Aligned_cols=33 Identities=27% Similarity=0.208 Sum_probs=23.7
Q ss_pred HHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981 78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 78 AerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
.+-|.+.+... ...++||+|||+|.++-.+.+.
T Consensus 20 t~lL~~~l~~~--~~~~vLDlG~G~G~i~~~la~~ 52 (170)
T PF05175_consen 20 TRLLLDNLPKH--KGGRVLDLGCGSGVISLALAKR 52 (170)
T ss_dssp HHHHHHHHHHH--TTCEEEEETSTTSHHHHHHHHT
T ss_pred HHHHHHHHhhc--cCCeEEEecCChHHHHHHHHHh
Confidence 33444444443 5778999999999998888654
No 32
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=95.15 E-value=0.14 Score=43.13 Aligned_cols=22 Identities=9% Similarity=-0.173 Sum_probs=18.1
Q ss_pred CCeEEEEccCccHHHHHHhccC
Q 032981 92 FPTALCLGGSLEAVRRLLRGRV 113 (129)
Q Consensus 92 f~~aLDLGcgtG~l~~~L~~~g 113 (129)
..+|||||||+|.++..|.+.+
T Consensus 132 g~~ILDIGCG~G~~s~~La~~g 153 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARMG 153 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHcC
Confidence 3489999999999998886543
No 33
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.10 E-value=0.014 Score=48.64 Aligned_cols=32 Identities=22% Similarity=0.212 Sum_probs=22.9
Q ss_pred HHHhhhHhhhc-cCCeEEEEccCccHHHHHHhc
Q 032981 80 NLLDRLEDCRK-TFPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 80 rL~DRL~~IkR-~f~~aLDLGcgtG~l~~~L~~ 111 (129)
-|.+++..... .|.++||||||||.....|+.
T Consensus 113 ~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~ 145 (287)
T COG4976 113 LLAEMIGKADLGPFRRMLDLGCGTGLTGEALRD 145 (287)
T ss_pred HHHHHHHhccCCccceeeecccCcCcccHhHHH
Confidence 34444444443 399999999999998888753
No 34
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=94.99 E-value=0.017 Score=47.78 Aligned_cols=33 Identities=27% Similarity=0.216 Sum_probs=26.5
Q ss_pred HHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981 78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 78 AerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
|.+|..++... .+..|.|||||+|..++.|.++
T Consensus 19 a~dLla~Vp~~--~~~~v~DLGCGpGnsTelL~~R 51 (257)
T COG4106 19 ARDLLARVPLE--RPRRVVDLGCGPGNSTELLARR 51 (257)
T ss_pred HHHHHhhCCcc--ccceeeecCCCCCHHHHHHHHh
Confidence 66777777653 4778999999999999999655
No 35
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=94.95 E-value=0.024 Score=42.22 Aligned_cols=33 Identities=18% Similarity=0.156 Sum_probs=23.7
Q ss_pred HHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981 78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 78 AerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
++.+.+.+.. .....+||+|||+|.++..+..+
T Consensus 2 ~~~i~~~~~~--~~~~~vLEiG~G~G~lt~~l~~~ 34 (169)
T smart00650 2 IDKIVRAANL--RPGDTVLEIGPGKGALTEELLER 34 (169)
T ss_pred HHHHHHhcCC--CCcCEEEEECCCccHHHHHHHhc
Confidence 4555555532 23468999999999999988665
No 36
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=94.89 E-value=0.02 Score=42.87 Aligned_cols=34 Identities=21% Similarity=0.138 Sum_probs=24.5
Q ss_pred HHHHhhhHhhhccCCeEEEEccCccHHHHHHhccCC
Q 032981 79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRVV 114 (129)
Q Consensus 79 erL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g~ 114 (129)
.-|.+.+... .+.++||+|||+|.++..+...+.
T Consensus 9 ~~l~~~l~~~--~~~~vLdlG~G~G~~~~~l~~~~~ 42 (179)
T TIGR00537 9 LLLEANLREL--KPDDVLEIGAGTGLVAIRLKGKGK 42 (179)
T ss_pred HHHHHHHHhc--CCCeEEEeCCChhHHHHHHHhcCC
Confidence 3344444443 457899999999999998876654
No 37
>PLN02244 tocopherol O-methyltransferase
Probab=94.88 E-value=0.031 Score=46.68 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=18.9
Q ss_pred ccCCeEEEEccCccHHHHHHhcc
Q 032981 90 KTFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 90 R~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
....+|||||||+|.++..|.+.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~ 139 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARK 139 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHh
Confidence 35678999999999998888653
No 38
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=94.88 E-value=0.027 Score=38.33 Aligned_cols=36 Identities=14% Similarity=0.038 Sum_probs=25.5
Q ss_pred HHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981 74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 74 q~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~ 111 (129)
++++...+.+.+. +. ...++||+|||+|.++..+..
T Consensus 4 ~~~~~~~~~~~~~-~~-~~~~vldlG~G~G~~~~~l~~ 39 (124)
T TIGR02469 4 KREVRALTLSKLR-LR-PGDVLWDIGAGSGSITIEAAR 39 (124)
T ss_pred hHHHHHHHHHHcC-CC-CCCEEEEeCCCCCHHHHHHHH
Confidence 4456666666653 22 246899999999999887754
No 39
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=94.86 E-value=0.027 Score=45.66 Aligned_cols=26 Identities=19% Similarity=0.005 Sum_probs=21.0
Q ss_pred hhccCCeEEEEccCccHHHHHHhccC
Q 032981 88 CRKTFPTALCLGGSLEAVRRLLRGRV 113 (129)
Q Consensus 88 IkR~f~~aLDLGcgtG~l~~~L~~~g 113 (129)
|..+.++|||||||.|++...|.+.|
T Consensus 64 v~~~A~~VlDLGtGNG~~L~~L~~eg 89 (227)
T KOG1271|consen 64 VSKQADRVLDLGTGNGHLLFQLAKEG 89 (227)
T ss_pred hcccccceeeccCCchHHHHHHHHhc
Confidence 34456799999999999999987644
No 40
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=94.85 E-value=0.037 Score=42.05 Aligned_cols=22 Identities=27% Similarity=0.190 Sum_probs=18.2
Q ss_pred cCCeEEEEccCccHHHHHHhcc
Q 032981 91 TFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
...+|||+|||+|.++..|...
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~ 34 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDE 34 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhc
Confidence 4568999999999999888543
No 41
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=94.82 E-value=0.032 Score=44.40 Aligned_cols=33 Identities=18% Similarity=-0.027 Sum_probs=22.8
Q ss_pred HHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981 81 LLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV 113 (129)
Q Consensus 81 L~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g 113 (129)
+++.|........++||+|||+|.++-.+.+.+
T Consensus 109 ~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g 141 (250)
T PRK00517 109 CLEALEKLVLPGKTVLDVGCGSGILAIAAAKLG 141 (250)
T ss_pred HHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcC
Confidence 333333333467899999999999887776543
No 42
>PRK06202 hypothetical protein; Provisional
Probab=94.77 E-value=0.081 Score=41.16 Aligned_cols=21 Identities=19% Similarity=-0.048 Sum_probs=17.5
Q ss_pred ccCCeEEEEccCccHHHHHHh
Q 032981 90 KTFPTALCLGGSLEAVRRLLR 110 (129)
Q Consensus 90 R~f~~aLDLGcgtG~l~~~L~ 110 (129)
....+|||||||+|.++..|.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~ 79 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLA 79 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHH
Confidence 456799999999999877764
No 43
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=94.70 E-value=0.031 Score=42.95 Aligned_cols=32 Identities=16% Similarity=0.065 Sum_probs=23.2
Q ss_pred HHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981 80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV 113 (129)
Q Consensus 80 rL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g 113 (129)
.+.+.+... ...+|||+|||+|..+..|.+.+
T Consensus 21 ~l~~~l~~~--~~~~vLDiGcG~G~~a~~La~~g 52 (197)
T PRK11207 21 EVLEAVKVV--KPGKTLDLGCGNGRNSLYLAANG 52 (197)
T ss_pred HHHHhcccC--CCCcEEEECCCCCHHHHHHHHCC
Confidence 344444432 46799999999999998887654
No 44
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=94.57 E-value=0.036 Score=45.49 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981 72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 72 fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
--|.+..+.+.|++. ++ .-.+|||||||.|.++..+.++
T Consensus 45 ~AQ~~k~~~~~~~~~-l~-~G~~vLDiGcGwG~~~~~~a~~ 83 (273)
T PF02353_consen 45 EAQERKLDLLCEKLG-LK-PGDRVLDIGCGWGGLAIYAAER 83 (273)
T ss_dssp HHHHHHHHHHHTTTT----TT-EEEEES-TTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CC-CCCEEEEeCCCccHHHHHHHHH
Confidence 345555666777763 33 5779999999999999888665
No 45
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=94.47 E-value=0.038 Score=46.14 Aligned_cols=23 Identities=17% Similarity=-0.084 Sum_probs=18.6
Q ss_pred cCCeEEEEccCccHHHHHHhccC
Q 032981 91 TFPTALCLGGSLEAVRRLLRGRV 113 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L~~~g 113 (129)
...+|||||||+|.++..+...+
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g 144 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAG 144 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcC
Confidence 35799999999999988775543
No 46
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=94.38 E-value=0.044 Score=42.40 Aligned_cols=34 Identities=9% Similarity=0.007 Sum_probs=22.9
Q ss_pred HHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981 76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 76 eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~ 111 (129)
.+...|.+.|.. ....++||+|||+|+.+..|.+
T Consensus 59 ~~~~~~~~~l~~--~~~~~VLDiG~GsG~~~~~la~ 92 (205)
T PRK13944 59 HMVAMMCELIEP--RPGMKILEVGTGSGYQAAVCAE 92 (205)
T ss_pred HHHHHHHHhcCC--CCCCEEEEECcCccHHHHHHHH
Confidence 344455554432 2457999999999998877643
No 47
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=94.32 E-value=0.067 Score=43.12 Aligned_cols=23 Identities=13% Similarity=-0.009 Sum_probs=19.0
Q ss_pred cCCeEEEEccCccHHHHHHhccC
Q 032981 91 TFPTALCLGGSLEAVRRLLRGRV 113 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L~~~g 113 (129)
.-..+||+|||||.++..|.+.|
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~g 97 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKG 97 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcC
Confidence 34489999999999999987653
No 48
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=94.28 E-value=0.061 Score=41.64 Aligned_cols=35 Identities=17% Similarity=0.065 Sum_probs=24.8
Q ss_pred HHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981 76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 76 eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
.+...|.+.+. + ....++||||||+|+.+..|.+.
T Consensus 64 ~~~~~~~~~l~-~-~~~~~VLDiG~GsG~~a~~la~~ 98 (215)
T TIGR00080 64 HMVAMMTELLE-L-KPGMKVLEIGTGSGYQAAVLAEI 98 (215)
T ss_pred HHHHHHHHHhC-C-CCcCEEEEECCCccHHHHHHHHH
Confidence 34455655554 2 35679999999999999887543
No 49
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=94.23 E-value=0.062 Score=44.09 Aligned_cols=37 Identities=16% Similarity=0.141 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981 72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 72 fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
-+.+..+++|.+.+. ....+||+|||||..+..|.+.
T Consensus 48 ~il~~~~~~ia~~~~----~~~~iLELGcGtG~~t~~Ll~~ 84 (301)
T TIGR03438 48 AILERHADEIAAATG----AGCELVELGSGSSRKTRLLLDA 84 (301)
T ss_pred HHHHHHHHHHHHhhC----CCCeEEecCCCcchhHHHHHHh
Confidence 455566666666553 3568999999999988777543
No 50
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=94.20 E-value=0.045 Score=41.35 Aligned_cols=30 Identities=17% Similarity=0.103 Sum_probs=22.5
Q ss_pred HHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981 81 LLDRLEDCRKTFPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 81 L~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~ 111 (129)
+.+++..++ ...+|||+|||+|.++..+..
T Consensus 23 ~~~~~~~i~-~g~~VLDiG~GtG~~~~~l~~ 52 (188)
T TIGR00438 23 LNQKFKLIK-PGDTVLDLGAAPGGWSQVAVE 52 (188)
T ss_pred HHHHhcccC-CCCEEEEecCCCCHHHHHHHH
Confidence 555565654 467899999999998887643
No 51
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=94.06 E-value=0.061 Score=41.26 Aligned_cols=37 Identities=14% Similarity=0.055 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHh
Q 032981 71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLR 110 (129)
Q Consensus 71 ~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~ 110 (129)
+++.+.+-+.+. -+..+ ...++||+|||+|.++-.+.
T Consensus 25 ~~~~~~~~d~i~-~~~~~--~~~~vLDiGcGtG~~s~~la 61 (181)
T TIGR00138 25 EIWERHILDSLK-LLEYL--DGKKVIDIGSGAGFPGIPLA 61 (181)
T ss_pred HHHHHHHHHHHH-HHHhc--CCCeEEEecCCCCccHHHHH
Confidence 445555545443 22233 26799999999998777664
No 52
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=94.03 E-value=0.051 Score=40.66 Aligned_cols=34 Identities=18% Similarity=0.126 Sum_probs=23.8
Q ss_pred HHHhhhHhhhc-cCCeEEEEccCccHHHHHHhccC
Q 032981 80 NLLDRLEDCRK-TFPTALCLGGSLEAVRRLLRGRV 113 (129)
Q Consensus 80 rL~DRL~~IkR-~f~~aLDLGcgtG~l~~~L~~~g 113 (129)
++.++...++. ....+|||||++|.|++.+..++
T Consensus 11 ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~ 45 (181)
T PF01728_consen 11 EIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRG 45 (181)
T ss_dssp HHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTST
T ss_pred HHHHHCCCCCcccccEEEEcCCcccceeeeeeecc
Confidence 34555554444 45799999999999999997765
No 53
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=93.76 E-value=0.061 Score=45.19 Aligned_cols=22 Identities=18% Similarity=-0.071 Sum_probs=17.5
Q ss_pred CCeEEEEccCccHHHHHHhccC
Q 032981 92 FPTALCLGGSLEAVRRLLRGRV 113 (129)
Q Consensus 92 f~~aLDLGcgtG~l~~~L~~~g 113 (129)
..+|||+|||+|.+...+...+
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g 143 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHG 143 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcC
Confidence 5689999999999877765443
No 54
>PRK07402 precorrin-6B methylase; Provisional
Probab=93.76 E-value=0.072 Score=40.50 Aligned_cols=38 Identities=11% Similarity=-0.024 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHh
Q 032981 71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLR 110 (129)
Q Consensus 71 ~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~ 110 (129)
...++++..-+.+.+. +. ...++||+|||+|.++..+.
T Consensus 22 p~t~~~v~~~l~~~l~-~~-~~~~VLDiG~G~G~~~~~la 59 (196)
T PRK07402 22 PLTKREVRLLLISQLR-LE-PDSVLWDIGAGTGTIPVEAG 59 (196)
T ss_pred CCCHHHHHHHHHHhcC-CC-CCCEEEEeCCCCCHHHHHHH
Confidence 4667777777777663 32 45789999999999877764
No 55
>PRK04148 hypothetical protein; Provisional
Probab=93.74 E-value=0.085 Score=39.70 Aligned_cols=37 Identities=22% Similarity=0.198 Sum_probs=27.8
Q ss_pred HHHHHHHHhhhHhhhccCCeEEEEccCccH-HHHHHhccC
Q 032981 75 DAVAENLLDRLEDCRKTFPTALCLGGSLEA-VRRLLRGRV 113 (129)
Q Consensus 75 ~eVAerL~DRL~~IkR~f~~aLDLGcgtG~-l~~~L~~~g 113 (129)
+.+++-|.+.+... ...++||+|||+|. ++..|.+.|
T Consensus 2 ~~i~~~l~~~~~~~--~~~kileIG~GfG~~vA~~L~~~G 39 (134)
T PRK04148 2 DTIAEFIAENYEKG--KNKKIVELGIGFYFKVAKKLKESG 39 (134)
T ss_pred hHHHHHHHHhcccc--cCCEEEEEEecCCHHHHHHHHHCC
Confidence 45777777777553 24689999999996 888887654
No 56
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=93.64 E-value=0.049 Score=44.92 Aligned_cols=23 Identities=13% Similarity=-0.132 Sum_probs=19.4
Q ss_pred cCCeEEEEccCccHHHHHHhccC
Q 032981 91 TFPTALCLGGSLEAVRRLLRGRV 113 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L~~~g 113 (129)
.-.+|||+|||-|.++..+...|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G 81 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG 81 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC
Confidence 45589999999999999987654
No 57
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=93.48 E-value=0.053 Score=36.72 Aligned_cols=18 Identities=39% Similarity=0.374 Sum_probs=13.6
Q ss_pred EEEEccCccHHHHHHhcc
Q 032981 95 ALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 95 aLDLGcgtG~l~~~L~~~ 112 (129)
|||+|||+|..+..+...
T Consensus 1 ILDlgcG~G~~~~~l~~~ 18 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARR 18 (101)
T ss_dssp -EEET-TTSHHHHHHHHH
T ss_pred CEEeecCCcHHHHHHHHH
Confidence 799999999998888644
No 58
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=93.45 E-value=0.099 Score=40.77 Aligned_cols=35 Identities=9% Similarity=0.003 Sum_probs=24.4
Q ss_pred HHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981 75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 75 ~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~ 111 (129)
-.+...|.+.+. ++ ...+|||+|||+|+.+..|..
T Consensus 62 p~~~~~~~~~l~-~~-~g~~VLdIG~GsG~~t~~la~ 96 (212)
T PRK13942 62 IHMVAIMCELLD-LK-EGMKVLEIGTGSGYHAAVVAE 96 (212)
T ss_pred HHHHHHHHHHcC-CC-CcCEEEEECCcccHHHHHHHH
Confidence 344455555553 22 467999999999999987753
No 59
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=93.45 E-value=0.027 Score=36.27 Aligned_cols=17 Identities=24% Similarity=0.210 Sum_probs=14.6
Q ss_pred EEEccCccHHHHHHhcc
Q 032981 96 LCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 96 LDLGcgtG~l~~~L~~~ 112 (129)
||+|||+|..+..|.+.
T Consensus 1 LdiG~G~G~~~~~l~~~ 17 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR 17 (95)
T ss_dssp EEET-TTSHHHHHHHHT
T ss_pred CEecCcCCHHHHHHHhc
Confidence 89999999999999776
No 60
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=93.45 E-value=0.059 Score=41.64 Aligned_cols=21 Identities=14% Similarity=0.015 Sum_probs=18.0
Q ss_pred cCCeEEEEccCccHHHHHHhc
Q 032981 91 TFPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L~~ 111 (129)
+...|||+|||+|..+..|.+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~ 60 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAK 60 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHH
Confidence 567899999999999888754
No 61
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=93.38 E-value=0.072 Score=44.24 Aligned_cols=41 Identities=15% Similarity=0.129 Sum_probs=29.5
Q ss_pred hHH-HHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981 71 DSF-VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV 113 (129)
Q Consensus 71 ~fL-q~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g 113 (129)
.|| ...+.+.+.+.+.. ...+.|||||||+|.++..|.+.+
T Consensus 17 nFL~d~~i~~~Iv~~~~~--~~~~~VLEIG~G~G~LT~~Ll~~~ 58 (294)
T PTZ00338 17 HILKNPLVLDKIVEKAAI--KPTDTVLEIGPGTGNLTEKLLQLA 58 (294)
T ss_pred cccCCHHHHHHHHHhcCC--CCcCEEEEecCchHHHHHHHHHhC
Confidence 454 45677777765532 246789999999999998886543
No 62
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=93.30 E-value=0.095 Score=42.77 Aligned_cols=23 Identities=4% Similarity=-0.195 Sum_probs=18.5
Q ss_pred cCCeEEEEccCccHHHHHHhccC
Q 032981 91 TFPTALCLGGSLEAVRRLLRGRV 113 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L~~~g 113 (129)
...+|||+|||+|.++..+.+.|
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g 181 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLG 181 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcC
Confidence 45799999999999887775543
No 63
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=93.02 E-value=0.17 Score=41.66 Aligned_cols=38 Identities=16% Similarity=-0.087 Sum_probs=25.6
Q ss_pred HHHHHHHhhhHhhh--ccCCeEEEEccCccHHHHHHhccC
Q 032981 76 AVAENLLDRLEDCR--KTFPTALCLGGSLEAVRRLLRGRV 113 (129)
Q Consensus 76 eVAerL~DRL~~Ik--R~f~~aLDLGcgtG~l~~~L~~~g 113 (129)
.+++.|.+.+.... ....+|||+|||+|.++-.|...+
T Consensus 156 ~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~ 195 (315)
T PRK03522 156 AVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPG 195 (315)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcC
Confidence 45555555443322 135799999999999988886543
No 64
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=92.89 E-value=0.15 Score=39.54 Aligned_cols=19 Identities=16% Similarity=-0.071 Sum_probs=16.2
Q ss_pred CCeEEEEccCccHHHHHHh
Q 032981 92 FPTALCLGGSLEAVRRLLR 110 (129)
Q Consensus 92 f~~aLDLGcgtG~l~~~L~ 110 (129)
..++||+|||+|..+-.+.
T Consensus 46 g~~VLDiGcGtG~~al~la 64 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLA 64 (187)
T ss_pred CCeEEEEcCCCCHHHHHHH
Confidence 6789999999998877664
No 65
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=92.87 E-value=0.086 Score=42.78 Aligned_cols=23 Identities=22% Similarity=-0.100 Sum_probs=18.8
Q ss_pred cCCeEEEEccCccHHHHHHhccC
Q 032981 91 TFPTALCLGGSLEAVRRLLRGRV 113 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L~~~g 113 (129)
.+.+|||+|||+|..+..|.+.|
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g 142 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLG 142 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCC
Confidence 35699999999999988886543
No 66
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=92.72 E-value=0.11 Score=43.52 Aligned_cols=36 Identities=17% Similarity=0.081 Sum_probs=24.9
Q ss_pred HHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccCCc
Q 032981 78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRVVL 115 (129)
Q Consensus 78 AerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g~v 115 (129)
-+.+++.|.. ....++||||||.|.+.....+..++
T Consensus 61 ~~~~~~kl~L--~~G~~lLDiGCGWG~l~~~aA~~y~v 96 (283)
T COG2230 61 LDLILEKLGL--KPGMTLLDIGCGWGGLAIYAAEEYGV 96 (283)
T ss_pred HHHHHHhcCC--CCCCEEEEeCCChhHHHHHHHHHcCC
Confidence 3444444433 25679999999999998888766433
No 67
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=92.71 E-value=0.14 Score=39.28 Aligned_cols=37 Identities=16% Similarity=0.033 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981 73 FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 73 Lq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~ 111 (129)
...++...|.+.+.. ....+|||+|||+|+.+..|..
T Consensus 62 ~~p~~~~~l~~~l~~--~~~~~VLeiG~GsG~~t~~la~ 98 (212)
T PRK00312 62 SQPYMVARMTELLEL--KPGDRVLEIGTGSGYQAAVLAH 98 (212)
T ss_pred CcHHHHHHHHHhcCC--CCCCEEEEECCCccHHHHHHHH
Confidence 445556666665532 2467999999999998876654
No 68
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=92.69 E-value=0.17 Score=42.40 Aligned_cols=26 Identities=19% Similarity=0.037 Sum_probs=17.7
Q ss_pred hHhhhccCCeEEEEccCccHHHHHHh
Q 032981 85 LEDCRKTFPTALCLGGSLEAVRRLLR 110 (129)
Q Consensus 85 L~~IkR~f~~aLDLGcgtG~l~~~L~ 110 (129)
|..+.....++||+|||+|.++=.-.
T Consensus 155 l~~~~~~g~~vLDvG~GSGILaiaA~ 180 (295)
T PF06325_consen 155 LEKYVKPGKRVLDVGCGSGILAIAAA 180 (295)
T ss_dssp HHHHSSTTSEEEEES-TTSHHHHHHH
T ss_pred HHHhccCCCEEEEeCCcHHHHHHHHH
Confidence 33445567799999999998765443
No 69
>PRK08317 hypothetical protein; Provisional
Probab=92.58 E-value=0.17 Score=38.00 Aligned_cols=21 Identities=19% Similarity=-0.012 Sum_probs=17.6
Q ss_pred cCCeEEEEccCccHHHHHHhc
Q 032981 91 TFPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L~~ 111 (129)
...+|||+|||+|.++..+..
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~ 39 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELAR 39 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHH
Confidence 457899999999999887754
No 70
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=92.51 E-value=0.17 Score=36.99 Aligned_cols=22 Identities=27% Similarity=0.217 Sum_probs=19.2
Q ss_pred ccCCeEEEEccCccHHHHHHhc
Q 032981 90 KTFPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 90 R~f~~aLDLGcgtG~l~~~L~~ 111 (129)
.+...++|+|||.|+++..|..
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~ 45 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAH 45 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHH
Confidence 3577999999999999998865
No 71
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=92.40 E-value=0.038 Score=37.04 Aligned_cols=16 Identities=25% Similarity=0.210 Sum_probs=11.8
Q ss_pred EEEccCccHHHHHHhc
Q 032981 96 LCLGGSLEAVRRLLRG 111 (129)
Q Consensus 96 LDLGcgtG~l~~~L~~ 111 (129)
||+|||+|.++..+.+
T Consensus 1 LdiGcG~G~~~~~l~~ 16 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLE 16 (99)
T ss_dssp -EESTTTS-TTTTHHH
T ss_pred CEeCccChHHHHHHHH
Confidence 7999999998887743
No 72
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=92.36 E-value=0.098 Score=44.01 Aligned_cols=22 Identities=14% Similarity=-0.076 Sum_probs=18.6
Q ss_pred CeEEEEccCccHHHHHHhccCC
Q 032981 93 PTALCLGGSLEAVRRLLRGRVV 114 (129)
Q Consensus 93 ~~aLDLGcgtG~l~~~L~~~g~ 114 (129)
..|||+|||+|.++..|.+.|.
T Consensus 91 ~~ilDvGCGgGLLSepLArlga 112 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGA 112 (282)
T ss_pred ceEEEeccCccccchhhHhhCC
Confidence 3599999999999999976554
No 73
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=92.10 E-value=0.1 Score=39.94 Aligned_cols=22 Identities=14% Similarity=0.043 Sum_probs=17.9
Q ss_pred cCCeEEEEccCccHHHHHHhcc
Q 032981 91 TFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
..+.+||||||+|.++..+...
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~ 37 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQ 37 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHh
Confidence 4568999999999998777543
No 74
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=92.07 E-value=0.16 Score=39.22 Aligned_cols=22 Identities=27% Similarity=0.116 Sum_probs=18.1
Q ss_pred ccCCeEEEEccCccHHHHHHhc
Q 032981 90 KTFPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 90 R~f~~aLDLGcgtG~l~~~L~~ 111 (129)
....+|||+|||+|.++..+..
T Consensus 86 ~~~~~ilDig~G~G~~~~~l~~ 107 (251)
T TIGR03534 86 KGPLRVLDLGTGSGAIALALAK 107 (251)
T ss_pred cCCCeEEEEeCcHhHHHHHHHH
Confidence 3456899999999999887754
No 75
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=91.91 E-value=0.18 Score=42.97 Aligned_cols=36 Identities=8% Similarity=0.098 Sum_probs=23.3
Q ss_pred HHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981 75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 75 ~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~ 111 (129)
+.+-+.+.+.+. +.....+|||||||+|.++..+.+
T Consensus 98 e~~r~~~l~~~~-l~~~~~~VLDLGcGtG~~~l~La~ 133 (340)
T PLN02490 98 EDMRDDALEPAD-LSDRNLKVVDVGGGTGFTTLGIVK 133 (340)
T ss_pred HHHHHHHHhhcc-cCCCCCEEEEEecCCcHHHHHHHH
Confidence 344444554443 233467999999999998776643
No 76
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=91.91 E-value=0.17 Score=42.76 Aligned_cols=22 Identities=14% Similarity=-0.099 Sum_probs=17.9
Q ss_pred cCCeEEEEccCccHHHHHHhcc
Q 032981 91 TFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
.+.++||+|||+|.++=+..+.
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kL 183 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKL 183 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHc
Confidence 7889999999999887655443
No 77
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=91.87 E-value=0.12 Score=45.04 Aligned_cols=46 Identities=22% Similarity=0.078 Sum_probs=31.7
Q ss_pred hHhhhcCCCChHHHHHHHHHHHhhhHhh----hc-----cCCeEEEEccCccHHH
Q 032981 61 DRAAWLTRPNDSFVDAVAENLLDRLEDC----RK-----TFPTALCLGGSLEAVR 106 (129)
Q Consensus 61 ~RAA~~y~~~~fLq~eVAerL~DRL~~I----kR-----~f~~aLDLGcgtG~l~ 106 (129)
+++..+|.....+|+.++..+..-|... .. ..-.|+|+||++|..+
T Consensus 24 G~g~~SYa~nS~~Q~~~~~~~k~~leeai~~~~~~~~p~~~~~iaDlGcs~G~nt 78 (386)
T PLN02668 24 GKGEGSYANNSQAQALHARSMLHLLEETLDNVHLNSSPEVPFTAVDLGCSSGSNT 78 (386)
T ss_pred CCccccHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeEEEecCCCCccH
Confidence 4555567777778888888886555553 11 1237999999999654
No 78
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=91.64 E-value=0.18 Score=40.58 Aligned_cols=40 Identities=25% Similarity=0.223 Sum_probs=31.2
Q ss_pred HH-HHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981 72 SF-VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV 113 (129)
Q Consensus 72 fL-q~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g 113 (129)
|| -..+++++.+.+..- .-..|||+|+|+|.++..|.+.+
T Consensus 12 FL~~~~~~~~Iv~~~~~~--~~~~VlEiGpG~G~lT~~L~~~~ 52 (262)
T PF00398_consen 12 FLVDPNIADKIVDALDLS--EGDTVLEIGPGPGALTRELLKRG 52 (262)
T ss_dssp EEEHHHHHHHHHHHHTCG--TTSEEEEESSTTSCCHHHHHHHS
T ss_pred eeCCHHHHHHHHHhcCCC--CCCEEEEeCCCCccchhhHhccc
Confidence 44 457788888877442 56789999999999999997654
No 79
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=91.59 E-value=0.26 Score=42.18 Aligned_cols=22 Identities=14% Similarity=0.061 Sum_probs=18.2
Q ss_pred cCCeEEEEccCccHHHHHHhcc
Q 032981 91 TFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
...++||||||+|.++..+.+.
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~ 188 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEH 188 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHH
Confidence 4569999999999998877653
No 80
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=91.22 E-value=0.16 Score=43.74 Aligned_cols=33 Identities=18% Similarity=0.183 Sum_probs=23.5
Q ss_pred HHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981 78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 78 AerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
...+.+.+... ...++||||||+|.++..|.+.
T Consensus 26 ~~~il~~l~~~--~~~~vLDlGcG~G~~~~~la~~ 58 (475)
T PLN02336 26 RPEILSLLPPY--EGKSVLELGAGIGRFTGELAKK 58 (475)
T ss_pred hhHHHhhcCcc--CCCEEEEeCCCcCHHHHHHHhh
Confidence 45555554332 3568999999999999988654
No 81
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=91.21 E-value=0.2 Score=43.01 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=23.0
Q ss_pred HHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981 78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 78 AerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~ 111 (129)
.+.+.+.+. + ....+|||||||+|..+..|..
T Consensus 255 te~l~~~~~-~-~~~~~vLDiGcG~G~~~~~la~ 286 (475)
T PLN02336 255 TKEFVDKLD-L-KPGQKVLDVGCGIGGGDFYMAE 286 (475)
T ss_pred HHHHHHhcC-C-CCCCEEEEEeccCCHHHHHHHH
Confidence 456666654 2 3467999999999988776654
No 82
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=91.21 E-value=0.44 Score=36.27 Aligned_cols=20 Identities=15% Similarity=-0.069 Sum_probs=17.0
Q ss_pred CCeEEEEccCccHHHHHHhc
Q 032981 92 FPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 92 f~~aLDLGcgtG~l~~~L~~ 111 (129)
..+|||+|||+|.++..+.+
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~ 65 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLAR 65 (224)
T ss_pred CCeEEEECCCCCHHHHHHHh
Confidence 66899999999998887754
No 83
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=91.17 E-value=0.28 Score=38.89 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=22.4
Q ss_pred HHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981 76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 76 eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~ 111 (129)
.+-..|++-|. ++ .-.++||||||+|+.+..|..
T Consensus 59 ~~~a~~l~~L~-l~-pg~~VLeIGtGsGY~aAlla~ 92 (209)
T PF01135_consen 59 SMVARMLEALD-LK-PGDRVLEIGTGSGYQAALLAH 92 (209)
T ss_dssp HHHHHHHHHTT-C--TT-EEEEES-TTSHHHHHHHH
T ss_pred HHHHHHHHHHh-cC-CCCEEEEecCCCcHHHHHHHH
Confidence 34444555554 33 467999999999999998864
No 84
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=91.13 E-value=0.18 Score=39.81 Aligned_cols=23 Identities=22% Similarity=-0.000 Sum_probs=18.2
Q ss_pred cCCeEEEEccCccHHHHHHhccC
Q 032981 91 TFPTALCLGGSLEAVRRLLRGRV 113 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L~~~g 113 (129)
.+.++||||||.|..+-.|...|
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G 52 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQG 52 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT
T ss_pred CCCcEEEcCCCCcHHHHHHHHCC
Confidence 47899999999999998887654
No 85
>PRK04266 fibrillarin; Provisional
Probab=90.99 E-value=0.31 Score=38.90 Aligned_cols=22 Identities=14% Similarity=0.064 Sum_probs=18.2
Q ss_pred cCCeEEEEccCccHHHHHHhcc
Q 032981 91 TFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
...+|||+|||+|.++..|...
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~ 93 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDI 93 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHh
Confidence 3569999999999998888653
No 86
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=90.80 E-value=0.27 Score=39.60 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=22.5
Q ss_pred HHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981 77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 77 VAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~ 111 (129)
..+.+.+.+.. ....+|||||||+|..+..|..
T Consensus 40 ~~~~~l~~l~l--~~~~~VLDiGcG~G~~a~~la~ 72 (263)
T PTZ00098 40 ATTKILSDIEL--NENSKVLDIGSGLGGGCKYINE 72 (263)
T ss_pred HHHHHHHhCCC--CCCCEEEEEcCCCChhhHHHHh
Confidence 34555554422 2356899999999998887754
No 87
>PRK14968 putative methyltransferase; Provisional
Probab=90.76 E-value=0.37 Score=35.34 Aligned_cols=22 Identities=14% Similarity=-0.017 Sum_probs=18.1
Q ss_pred cCCeEEEEccCccHHHHHHhcc
Q 032981 91 TFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
...++||+|||+|.++..+...
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~ 44 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN 44 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh
Confidence 4568999999999998887544
No 88
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=90.76 E-value=0.18 Score=42.69 Aligned_cols=21 Identities=14% Similarity=0.110 Sum_probs=17.9
Q ss_pred CCeEEEEccCccHHHHHHhcc
Q 032981 92 FPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 92 f~~aLDLGcgtG~l~~~L~~~ 112 (129)
..+|||+|||+|.++..+.+.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~ 217 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARH 217 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHh
Confidence 458999999999999888654
No 89
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=90.58 E-value=0.33 Score=39.46 Aligned_cols=22 Identities=9% Similarity=0.240 Sum_probs=18.1
Q ss_pred cCCeEEEEccCccHHHHHHhcc
Q 032981 91 TFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
...++||||||+|.++..+.+.
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~ 170 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKH 170 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHH
Confidence 4679999999999988877543
No 90
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=90.47 E-value=0.45 Score=41.10 Aligned_cols=38 Identities=16% Similarity=0.050 Sum_probs=25.2
Q ss_pred HHHHHHHHhhhHhhh--ccCCeEEEEccCccHHHHHHhcc
Q 032981 75 DAVAENLLDRLEDCR--KTFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 75 ~eVAerL~DRL~~Ik--R~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
..+++.|.+.+.... ....++||+|||+|.++-.|.+.
T Consensus 279 ~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~ 318 (443)
T PRK13168 279 AQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ 318 (443)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh
Confidence 444555555443322 23468999999999998888654
No 91
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=90.19 E-value=0.16 Score=43.83 Aligned_cols=20 Identities=15% Similarity=0.079 Sum_probs=17.1
Q ss_pred CeEEEEccCccHHHHHHhcc
Q 032981 93 PTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 93 ~~aLDLGcgtG~l~~~L~~~ 112 (129)
.+|||||||+|.++-.+.+.
T Consensus 230 ~~VLDLGCGtGvi~i~la~~ 249 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDK 249 (378)
T ss_pred CeEEEEeccccHHHHHHHHh
Confidence 58999999999998887554
No 92
>PRK00811 spermidine synthase; Provisional
Probab=90.03 E-value=0.26 Score=40.35 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=19.3
Q ss_pred ccCCeEEEEccCccHHHHHHhcc
Q 032981 90 KTFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 90 R~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
..+.+|||||||+|..+..+.+.
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~ 97 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKH 97 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcC
Confidence 35789999999999998877554
No 93
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=89.94 E-value=0.4 Score=39.24 Aligned_cols=22 Identities=9% Similarity=-0.141 Sum_probs=18.2
Q ss_pred cCCeEEEEccCccHHHHHHhcc
Q 032981 91 TFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
...++||+|||+|.++-.+...
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~ 142 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYA 142 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHH
Confidence 4578999999999998888643
No 94
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=89.88 E-value=0.28 Score=40.73 Aligned_cols=20 Identities=10% Similarity=-0.147 Sum_probs=17.0
Q ss_pred CeEEEEccCccHHHHHHhcc
Q 032981 93 PTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 93 ~~aLDLGcgtG~l~~~L~~~ 112 (129)
.++||+|||+|.++-.+...
T Consensus 135 ~~VLDlG~GsG~iai~la~~ 154 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYA 154 (307)
T ss_pred CEEEEEechhhHHHHHHHHH
Confidence 68999999999998877543
No 95
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=89.67 E-value=0.33 Score=39.91 Aligned_cols=20 Identities=25% Similarity=0.127 Sum_probs=17.2
Q ss_pred eEEEEccCccHHHHHHhccC
Q 032981 94 TALCLGGSLEAVRRLLRGRV 113 (129)
Q Consensus 94 ~aLDLGcgtG~l~~~L~~~g 113 (129)
+|||||||+|.++-.|....
T Consensus 113 ~ilDlGTGSG~iai~la~~~ 132 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG 132 (280)
T ss_pred cEEEecCChHHHHHHHHhhC
Confidence 89999999999998886543
No 96
>PRK14967 putative methyltransferase; Provisional
Probab=89.65 E-value=0.45 Score=36.97 Aligned_cols=21 Identities=14% Similarity=-0.132 Sum_probs=17.7
Q ss_pred CCeEEEEccCccHHHHHHhcc
Q 032981 92 FPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 92 f~~aLDLGcgtG~l~~~L~~~ 112 (129)
..++||+|||+|.++..+...
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~ 57 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAA 57 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHc
Confidence 468999999999998877654
No 97
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=89.54 E-value=0.3 Score=30.45 Aligned_cols=18 Identities=28% Similarity=0.217 Sum_probs=15.0
Q ss_pred eEEEEccCccHHHHHHhc
Q 032981 94 TALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 94 ~aLDLGcgtG~l~~~L~~ 111 (129)
+++|+|||+|..+..+..
T Consensus 1 ~ildig~G~G~~~~~~~~ 18 (107)
T cd02440 1 RVLDLGCGTGALALALAS 18 (107)
T ss_pred CeEEEcCCccHHHHHHhc
Confidence 479999999998877754
No 98
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=89.22 E-value=0.31 Score=41.31 Aligned_cols=32 Identities=22% Similarity=0.134 Sum_probs=22.5
Q ss_pred HHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981 80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV 113 (129)
Q Consensus 80 rL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g 113 (129)
-|++.|..- ...+|||+|||.|.+.-.|.+..
T Consensus 149 lLl~~l~~~--~~~~vlDlGCG~Gvlg~~la~~~ 180 (300)
T COG2813 149 LLLETLPPD--LGGKVLDLGCGYGVLGLVLAKKS 180 (300)
T ss_pred HHHHhCCcc--CCCcEEEeCCCccHHHHHHHHhC
Confidence 345555442 23389999999999988886554
No 99
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=89.16 E-value=0.49 Score=38.07 Aligned_cols=18 Identities=22% Similarity=0.012 Sum_probs=14.2
Q ss_pred cCCeEEEEccCccHHHHH
Q 032981 91 TFPTALCLGGSLEAVRRL 108 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~ 108 (129)
+-..|+|+|||||.++=.
T Consensus 45 ~g~~V~DlG~GTG~La~g 62 (198)
T COG2263 45 EGKTVLDLGAGTGILAIG 62 (198)
T ss_pred CCCEEEEcCCCcCHHHHH
Confidence 456799999999977543
No 100
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=88.95 E-value=0.33 Score=38.28 Aligned_cols=22 Identities=5% Similarity=-0.299 Sum_probs=18.9
Q ss_pred CCeEEEEccCccHHHHHHhccC
Q 032981 92 FPTALCLGGSLEAVRRLLRGRV 113 (129)
Q Consensus 92 f~~aLDLGcgtG~l~~~L~~~g 113 (129)
..+|||+|||.|.-+..|...|
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G 56 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQG 56 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCC
Confidence 4689999999999999997654
No 101
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=88.89 E-value=0.62 Score=37.79 Aligned_cols=20 Identities=20% Similarity=0.066 Sum_probs=16.8
Q ss_pred CeEEEEccCccHHHHHHhcc
Q 032981 93 PTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 93 ~~aLDLGcgtG~l~~~L~~~ 112 (129)
.++||+|||+|.++-.+...
T Consensus 116 ~~vLDlG~GsG~i~l~la~~ 135 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYE 135 (284)
T ss_pred CEEEEEeccHhHHHHHHHHH
Confidence 68999999999988877543
No 102
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.86 E-value=0.49 Score=38.20 Aligned_cols=34 Identities=21% Similarity=0.123 Sum_probs=25.1
Q ss_pred HHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981 77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 77 VAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
+.-+|.+.|+. +..++||+||||+|+.+..|.+.
T Consensus 60 ~vA~m~~~L~~--~~g~~VLEIGtGsGY~aAvla~l 93 (209)
T COG2518 60 MVARMLQLLEL--KPGDRVLEIGTGSGYQAAVLARL 93 (209)
T ss_pred HHHHHHHHhCC--CCCCeEEEECCCchHHHHHHHHH
Confidence 44556655543 34689999999999999988654
No 103
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=88.72 E-value=0.42 Score=39.05 Aligned_cols=28 Identities=25% Similarity=0.240 Sum_probs=19.0
Q ss_pred HHHHHHhhhHhhhccCCeEEEEccCccHHH
Q 032981 77 VAENLLDRLEDCRKTFPTALCLGGSLEAVR 106 (129)
Q Consensus 77 VAerL~DRL~~IkR~f~~aLDLGcgtG~l~ 106 (129)
|-+++..|+.+. .+.++||+|||+|...
T Consensus 21 vl~El~~r~p~f--~P~~vLD~GsGpGta~ 48 (274)
T PF09243_consen 21 VLSELRKRLPDF--RPRSVLDFGSGPGTAL 48 (274)
T ss_pred HHHHHHHhCcCC--CCceEEEecCChHHHH
Confidence 344455555443 5789999999999654
No 104
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=88.57 E-value=0.48 Score=40.51 Aligned_cols=36 Identities=19% Similarity=0.061 Sum_probs=23.6
Q ss_pred ChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981 70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 70 ~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~ 111 (129)
+++=.+++...| .++ .-.+|||||||.|+..=.+.+
T Consensus 100 Sd~KW~rl~p~l----~~L--~gk~VLDIGC~nGY~~frM~~ 135 (315)
T PF08003_consen 100 SDWKWDRLLPHL----PDL--KGKRVLDIGCNNGYYSFRMLG 135 (315)
T ss_pred ccchHHHHHhhh----CCc--CCCEEEEecCCCcHHHHHHhh
Confidence 455555555444 333 456899999999988755543
No 105
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=88.22 E-value=0.91 Score=38.56 Aligned_cols=37 Identities=16% Similarity=0.041 Sum_probs=24.0
Q ss_pred HHHHHHHhhhHhh-h-ccCCeEEEEccCccHHHHHHhcc
Q 032981 76 AVAENLLDRLEDC-R-KTFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 76 eVAerL~DRL~~I-k-R~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
++++.|.+.+... . ....++||+|||+|.++-.+...
T Consensus 216 ~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~ 254 (374)
T TIGR02085 216 KVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP 254 (374)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc
Confidence 4555555444332 1 23468999999999988777543
No 106
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=88.20 E-value=2.2 Score=32.81 Aligned_cols=22 Identities=9% Similarity=-0.112 Sum_probs=17.7
Q ss_pred cCCeEEEEccCccHHHHHHhcc
Q 032981 91 TFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
....|||||||+|.++..+.+.
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~ 69 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL 69 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc
Confidence 3568999999999988777544
No 107
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=88.06 E-value=0.68 Score=38.37 Aligned_cols=42 Identities=19% Similarity=0.275 Sum_probs=27.4
Q ss_pred hHHHHH-HHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccCC
Q 032981 71 DSFVDA-VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRVV 114 (129)
Q Consensus 71 ~fLq~e-VAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g~ 114 (129)
.||.+. +.+++.+-.. +.. .+.||+||+|.|.++..|.++++
T Consensus 11 nFL~d~~v~~kIv~~a~-~~~-~d~VlEIGpG~GaLT~~Ll~~~~ 53 (259)
T COG0030 11 NFLIDKNVIDKIVEAAN-ISP-GDNVLEIGPGLGALTEPLLERAA 53 (259)
T ss_pred ccccCHHHHHHHHHhcC-CCC-CCeEEEECCCCCHHHHHHHhhcC
Confidence 444443 3444443322 222 57999999999999999976654
No 108
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=87.98 E-value=0.45 Score=37.42 Aligned_cols=22 Identities=23% Similarity=0.089 Sum_probs=17.9
Q ss_pred cCCeEEEEccCccHHHHHHhcc
Q 032981 91 TFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
...++||+|||+|.++..+...
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~ 129 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKE 129 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHH
Confidence 4668999999999988877543
No 109
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=87.67 E-value=0.5 Score=34.93 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=19.9
Q ss_pred ccCCeEEEEccCccHHHHHHhccC
Q 032981 90 KTFPTALCLGGSLEAVRRLLRGRV 113 (129)
Q Consensus 90 R~f~~aLDLGcgtG~l~~~L~~~g 113 (129)
..|..-+|||||.|.+.-.|...|
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~EG 80 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSEG 80 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhCC
Confidence 357788999999999999886554
No 110
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=87.54 E-value=0.49 Score=41.77 Aligned_cols=19 Identities=21% Similarity=0.027 Sum_probs=16.0
Q ss_pred CCeEEEEccCccHHHHHHh
Q 032981 92 FPTALCLGGSLEAVRRLLR 110 (129)
Q Consensus 92 f~~aLDLGcgtG~l~~~L~ 110 (129)
..++||+|||+|.++-.|.
T Consensus 252 ~~rVLDLGcGSG~IaiaLA 270 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVA 270 (423)
T ss_pred CCEEEEEeChhhHHHHHHH
Confidence 4589999999999887764
No 111
>PLN02366 spermidine synthase
Probab=87.44 E-value=0.47 Score=39.72 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=21.2
Q ss_pred ccCCeEEEEccCccHHHHHHhccCCc
Q 032981 90 KTFPTALCLGGSLEAVRRLLRGRVVL 115 (129)
Q Consensus 90 R~f~~aLDLGcgtG~l~~~L~~~g~v 115 (129)
..+.+||+||||+|.+...+.+...+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v 115 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSV 115 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCC
Confidence 35889999999999999888665444
No 112
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=87.36 E-value=0.61 Score=40.72 Aligned_cols=22 Identities=5% Similarity=-0.221 Sum_probs=18.2
Q ss_pred cCCeEEEEccCccHHHHHHhcc
Q 032981 91 TFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
..+.+||||||+|..+-.+...
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~ 143 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKN 143 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHh
Confidence 4568999999999998888654
No 113
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=87.15 E-value=1 Score=38.55 Aligned_cols=38 Identities=13% Similarity=0.028 Sum_probs=26.2
Q ss_pred HHHHHHHHhhhHhhhc--cCCeEEEEccCccHHHHHHhcc
Q 032981 75 DAVAENLLDRLEDCRK--TFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 75 ~eVAerL~DRL~~IkR--~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
.+.++.|.+++..... ...++||+|||+|.++-.|...
T Consensus 274 ~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~ 313 (431)
T TIGR00479 274 SGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ 313 (431)
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh
Confidence 4556666665544322 3468999999999998888643
No 114
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=87.15 E-value=0.91 Score=34.62 Aligned_cols=36 Identities=14% Similarity=0.036 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHH
Q 032981 72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLL 109 (129)
Q Consensus 72 fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L 109 (129)
+-+.++-.-...++.. .....+||+|||+|.++-.+
T Consensus 23 ~t~~~~r~~~l~~l~~--~~~~~vlDlG~GtG~~s~~~ 58 (198)
T PRK00377 23 MTKEEIRALALSKLRL--RKGDMILDIGCGTGSVTVEA 58 (198)
T ss_pred CCHHHHHHHHHHHcCC--CCcCEEEEeCCcCCHHHHHH
Confidence 4444553333344422 24578999999999887655
No 115
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=86.56 E-value=0.41 Score=41.24 Aligned_cols=42 Identities=14% Similarity=-0.111 Sum_probs=31.7
Q ss_pred CChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981 69 PNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 69 ~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
+.-++|++.+..+..-|.. . ...+|||+|||+|..+-.+...
T Consensus 224 G~~~iQd~~s~~~~~~l~~-~-~g~~VLDlgaG~G~~t~~la~~ 265 (427)
T PRK10901 224 GWVSVQDAAAQLAATLLAP-Q-NGERVLDACAAPGGKTAHILEL 265 (427)
T ss_pred ceEEEECHHHHHHHHHcCC-C-CCCEEEEeCCCCChHHHHHHHH
Confidence 3457788888888876643 2 4679999999999988777543
No 116
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=86.37 E-value=1.2 Score=34.92 Aligned_cols=17 Identities=12% Similarity=-0.263 Sum_probs=14.5
Q ss_pred CCeEEEEccCccHHHHH
Q 032981 92 FPTALCLGGSLEAVRRL 108 (129)
Q Consensus 92 f~~aLDLGcgtG~l~~~ 108 (129)
-.++||+|||+|.++-.
T Consensus 54 ~~~vLDl~~GsG~l~l~ 70 (199)
T PRK10909 54 DARCLDCFAGSGALGLE 70 (199)
T ss_pred CCEEEEcCCCccHHHHH
Confidence 45899999999999864
No 117
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=86.15 E-value=1 Score=36.26 Aligned_cols=20 Identities=20% Similarity=-0.021 Sum_probs=16.3
Q ss_pred CCeEEEEccCccHHHHHHhc
Q 032981 92 FPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 92 f~~aLDLGcgtG~l~~~L~~ 111 (129)
..++||+|||+|.++-.+..
T Consensus 87 ~~~vLDlg~GsG~i~l~la~ 106 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAA 106 (251)
T ss_pred CCEEEEecCchHHHHHHHHH
Confidence 35899999999998877643
No 118
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=86.14 E-value=0.93 Score=40.26 Aligned_cols=19 Identities=26% Similarity=0.224 Sum_probs=16.1
Q ss_pred CCeEEEEccCccHHHHHHh
Q 032981 92 FPTALCLGGSLEAVRRLLR 110 (129)
Q Consensus 92 f~~aLDLGcgtG~l~~~L~ 110 (129)
..+|||+|||+|.++-.+.
T Consensus 139 ~~~VLDlG~GsG~iai~la 157 (506)
T PRK01544 139 FLNILELGTGSGCIAISLL 157 (506)
T ss_pred CCEEEEccCchhHHHHHHH
Confidence 4689999999999887664
No 119
>PRK06922 hypothetical protein; Provisional
Probab=85.93 E-value=0.49 Score=44.10 Aligned_cols=21 Identities=10% Similarity=0.050 Sum_probs=17.6
Q ss_pred cCCeEEEEccCccHHHHHHhc
Q 032981 91 TFPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L~~ 111 (129)
...+|||+|||+|..+..|.+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~ 438 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEE 438 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHH
Confidence 467999999999998877754
No 120
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=85.78 E-value=1.3 Score=37.42 Aligned_cols=38 Identities=16% Similarity=0.010 Sum_probs=25.2
Q ss_pred HHHHHHHHhhhHhhhc-cCCeEEEEccCccHHHHHHhcc
Q 032981 75 DAVAENLLDRLEDCRK-TFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 75 ~eVAerL~DRL~~IkR-~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
..+++.|.+.+.+... ....+||+|||+|.++-.|.+.
T Consensus 180 ~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~ 218 (353)
T TIGR02143 180 AAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQN 218 (353)
T ss_pred HHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHh
Confidence 3445566655544332 2347999999999998887653
No 121
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=85.70 E-value=0.74 Score=37.29 Aligned_cols=33 Identities=12% Similarity=0.028 Sum_probs=21.2
Q ss_pred ChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccH
Q 032981 70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEA 104 (129)
Q Consensus 70 ~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~ 104 (129)
.++|.+.+...|.++.. ....-+|+|+|||||.
T Consensus 80 ~~~l~~~vlp~l~~~~~--~~~~~ri~d~GCgtGe 112 (264)
T smart00138 80 FEALEEKVLPLLIASRR--HGRRVRIWSAGCSTGE 112 (264)
T ss_pred HHHHHHHHhHHHHHhcC--CCCCEEEEeccccCCh
Confidence 45666666666554311 1234689999999995
No 122
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=85.51 E-value=0.69 Score=37.21 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=19.8
Q ss_pred hhhccCCeEEEEccCccHHHHHHhcc
Q 032981 87 DCRKTFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 87 ~IkR~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
.-...+..+||+|||.|.++..|..+
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~r 64 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPR 64 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGG
T ss_pred cCccccceeEecCCCccHHHHHHHHh
Confidence 33456889999999999999999764
No 123
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=85.38 E-value=0.62 Score=37.07 Aligned_cols=37 Identities=8% Similarity=0.037 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHh
Q 032981 72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLR 110 (129)
Q Consensus 72 fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~ 110 (129)
.-++||=--.+.+|.- +.-++++|+|||||.++-.+.
T Consensus 17 ~TK~EIRal~ls~L~~--~~g~~l~DIGaGtGsi~iE~a 53 (187)
T COG2242 17 MTKEEIRALTLSKLRP--RPGDRLWDIGAGTGSITIEWA 53 (187)
T ss_pred CcHHHHHHHHHHhhCC--CCCCEEEEeCCCccHHHHHHH
Confidence 3445555555555544 356799999999999887765
No 124
>PRK04457 spermidine synthase; Provisional
Probab=85.33 E-value=0.55 Score=38.04 Aligned_cols=21 Identities=10% Similarity=0.056 Sum_probs=18.0
Q ss_pred cCCeEEEEccCccHHHHHHhc
Q 032981 91 TFPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L~~ 111 (129)
.+.+|||||||+|.++..+.+
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~ 86 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYT 86 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHH
Confidence 577899999999999987754
No 125
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=85.12 E-value=1.6 Score=36.92 Aligned_cols=37 Identities=24% Similarity=0.104 Sum_probs=25.5
Q ss_pred HHHHHHHHhhhHhhhc-cCCeEEEEccCccHHHHHHhc
Q 032981 75 DAVAENLLDRLEDCRK-TFPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 75 ~eVAerL~DRL~~IkR-~f~~aLDLGcgtG~l~~~L~~ 111 (129)
.++++.|.+.+..... ...++||++||+|.++-.|.+
T Consensus 189 ~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~ 226 (362)
T PRK05031 189 AAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALAR 226 (362)
T ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHh
Confidence 3456666666554332 235799999999999887754
No 126
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=85.04 E-value=1.5 Score=37.66 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=22.1
Q ss_pred HHHHHHHHhhhHhhhc-cCCeEEEEccCccHHHHHH
Q 032981 75 DAVAENLLDRLEDCRK-TFPTALCLGGSLEAVRRLL 109 (129)
Q Consensus 75 ~eVAerL~DRL~~IkR-~f~~aLDLGcgtG~l~~~L 109 (129)
+|..+.+.|-+..-.. ....+||+|||+|.++-.+
T Consensus 131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsl 166 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSL 166 (328)
T ss_pred HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHH
Confidence 4444545444433222 3558999999999887655
No 127
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=84.87 E-value=1.1 Score=39.47 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhhHhhhcc--CCeEEEEccCccHHHHHH
Q 032981 73 FVDAVAENLLDRLEDCRKT--FPTALCLGGSLEAVRRLL 109 (129)
Q Consensus 73 Lq~eVAerL~DRL~~IkR~--f~~aLDLGcgtG~l~~~L 109 (129)
-++.|.+-|.|+...-+.. ...|+|+|||+|.+....
T Consensus 166 Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~a 204 (448)
T PF05185_consen 166 YERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFA 204 (448)
T ss_dssp HHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHH
T ss_pred HHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHH
Confidence 3445566666666554322 468999999999987543
No 128
>PRK01581 speE spermidine synthase; Validated
Probab=84.77 E-value=0.68 Score=40.36 Aligned_cols=25 Identities=20% Similarity=0.036 Sum_probs=19.8
Q ss_pred ccCCeEEEEccCccHHHHHHhccCC
Q 032981 90 KTFPTALCLGGSLEAVRRLLRGRVV 114 (129)
Q Consensus 90 R~f~~aLDLGcgtG~l~~~L~~~g~ 114 (129)
..+.+||+||||+|.....+.+...
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~ 173 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYET 173 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCC
Confidence 4588999999999998877765443
No 129
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=84.72 E-value=0.99 Score=36.53 Aligned_cols=39 Identities=15% Similarity=0.093 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981 71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 71 ~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~ 111 (129)
.||.=.+-|.=.+-|. ...+..+++||||+|.++..|..
T Consensus 25 TFlLlDaLekd~~eL~--~~~~~i~lEIG~GSGvvstfL~~ 63 (209)
T KOG3191|consen 25 TFLLLDALEKDAAELK--GHNPEICLEIGCGSGVVSTFLAS 63 (209)
T ss_pred hhHHHHHHHHHHHHHh--hcCceeEEEecCCcchHHHHHHH
Confidence 4654444333332222 23588899999999999999864
No 130
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=84.51 E-value=1.6 Score=35.19 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=18.7
Q ss_pred ccCCeEEEEccCccHHHHHHhcc
Q 032981 90 KTFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 90 R~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
..+.+||+||||+|.++..+.+.
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~ 93 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKH 93 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhC
Confidence 35779999999999988777544
No 131
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=84.29 E-value=0.86 Score=36.06 Aligned_cols=22 Identities=9% Similarity=-0.284 Sum_probs=18.7
Q ss_pred CCeEEEEccCccHHHHHHhccC
Q 032981 92 FPTALCLGGSLEAVRRLLRGRV 113 (129)
Q Consensus 92 f~~aLDLGcgtG~l~~~L~~~g 113 (129)
-.+|||+|||.|.-+..|...|
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G 59 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQG 59 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCC
Confidence 4689999999999999887654
No 132
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=84.22 E-value=0.87 Score=38.43 Aligned_cols=21 Identities=14% Similarity=0.089 Sum_probs=17.7
Q ss_pred cCCeEEEEccCccHHHHHHhc
Q 032981 91 TFPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L~~ 111 (129)
...+|||+|||+|+++..+.+
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~ 100 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSR 100 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHH
Confidence 457999999999999887754
No 133
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=83.68 E-value=0.97 Score=35.85 Aligned_cols=19 Identities=26% Similarity=-0.064 Sum_probs=14.9
Q ss_pred cCCeEEEEccCccHHHHHH
Q 032981 91 TFPTALCLGGSLEAVRRLL 109 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L 109 (129)
...+|||+|||+|...-.+
T Consensus 77 ~g~~VLDiG~G~G~~~~~~ 95 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLA 95 (272)
T ss_pred CCCEEEEeCCCCCHHHHHH
Confidence 4679999999999765433
No 134
>PRK03612 spermidine synthase; Provisional
Probab=83.08 E-value=1.5 Score=38.93 Aligned_cols=25 Identities=20% Similarity=0.029 Sum_probs=20.3
Q ss_pred ccCCeEEEEccCccHHHHHHhccCC
Q 032981 90 KTFPTALCLGGSLEAVRRLLRGRVV 114 (129)
Q Consensus 90 R~f~~aLDLGcgtG~l~~~L~~~g~ 114 (129)
.++.+|||||||+|..+..+.+.+.
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~ 320 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPD 320 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCC
Confidence 4578999999999999988765543
No 135
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=82.05 E-value=0.96 Score=39.12 Aligned_cols=21 Identities=14% Similarity=0.031 Sum_probs=17.0
Q ss_pred CeEEEEccCccHHHHHHhccC
Q 032981 93 PTALCLGGSLEAVRRLLRGRV 113 (129)
Q Consensus 93 ~~aLDLGcgtG~l~~~L~~~g 113 (129)
..|||+|||||.++-.-.+.|
T Consensus 62 K~VlDVGcGtGILS~F~akAG 82 (346)
T KOG1499|consen 62 KTVLDVGCGTGILSMFAAKAG 82 (346)
T ss_pred CEEEEcCCCccHHHHHHHHhC
Confidence 589999999999887665544
No 136
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=81.84 E-value=1.2 Score=34.60 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=16.2
Q ss_pred cCCeEEEEccCccHHHHHHh
Q 032981 91 TFPTALCLGGSLEAVRRLLR 110 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L~ 110 (129)
.+.+++|||+|+|.++..+.
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~ 119 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALA 119 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHH
T ss_pred CccEEEeccCcchHHHHHHH
Confidence 46789999999999988774
No 137
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=81.73 E-value=2.4 Score=36.89 Aligned_cols=24 Identities=21% Similarity=-0.016 Sum_probs=20.9
Q ss_pred ccCCeEEEEccCccHHHHHHhccC
Q 032981 90 KTFPTALCLGGSLEAVRRLLRGRV 113 (129)
Q Consensus 90 R~f~~aLDLGcgtG~l~~~L~~~g 113 (129)
.....+|||||.+|.++..|.++|
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG 233 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRG 233 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcC
Confidence 456799999999999999997765
No 138
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=81.40 E-value=1.3 Score=34.41 Aligned_cols=21 Identities=19% Similarity=0.055 Sum_probs=15.7
Q ss_pred cCCeEEEEccCccHHHHHHhc
Q 032981 91 TFPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L~~ 111 (129)
..+.+||||||.|.+.-.+..
T Consensus 17 ~~~l~lEIG~G~G~~l~~~A~ 37 (195)
T PF02390_consen 17 DNPLILEIGCGKGEFLIELAK 37 (195)
T ss_dssp CCEEEEEET-TTSHHHHHHHH
T ss_pred CCCeEEEecCCCCHHHHHHHH
Confidence 344899999999988877743
No 139
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=81.04 E-value=0.9 Score=39.19 Aligned_cols=40 Identities=13% Similarity=-0.083 Sum_probs=27.8
Q ss_pred ChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981 70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 70 ~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~ 111 (129)
.-++|++.+.-+.+.|. + ....+|||+|||+|..+-.+..
T Consensus 231 ~~~~qd~~s~lv~~~l~-~-~~g~~VLDlgaG~G~~t~~la~ 270 (444)
T PRK14902 231 LITIQDESSMLVAPALD-P-KGGDTVLDACAAPGGKTTHIAE 270 (444)
T ss_pred eEEEEChHHHHHHHHhC-C-CCCCEEEEeCCCCCHHHHHHHH
Confidence 34667777776665553 2 2357899999999988776643
No 140
>PHA03412 putative methyltransferase; Provisional
Probab=80.92 E-value=1.6 Score=35.91 Aligned_cols=19 Identities=5% Similarity=-0.011 Sum_probs=16.4
Q ss_pred CCeEEEEccCccHHHHHHh
Q 032981 92 FPTALCLGGSLEAVRRLLR 110 (129)
Q Consensus 92 f~~aLDLGcgtG~l~~~L~ 110 (129)
..+|||+|||+|.++-.+.
T Consensus 50 ~grVLDlG~GSG~Lalala 68 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMV 68 (241)
T ss_pred CCEEEEccChHHHHHHHHH
Confidence 5699999999999987664
No 141
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=80.77 E-value=1.3 Score=36.16 Aligned_cols=20 Identities=5% Similarity=0.032 Sum_probs=12.5
Q ss_pred CeEEEEccCccHHHHHHhcc
Q 032981 93 PTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 93 ~~aLDLGcgtG~l~~~L~~~ 112 (129)
-.|.|+|||.+.+++.+...
T Consensus 74 ~viaD~GCGdA~la~~~~~~ 93 (219)
T PF05148_consen 74 LVIADFGCGDAKLAKAVPNK 93 (219)
T ss_dssp S-EEEES-TT-HHHHH--S-
T ss_pred EEEEECCCchHHHHHhcccC
Confidence 48999999999999888643
No 142
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=80.74 E-value=0.82 Score=39.31 Aligned_cols=40 Identities=15% Similarity=-0.045 Sum_probs=29.9
Q ss_pred ChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981 70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 70 ~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~ 111 (129)
.-++|++.+.-+...|.- . ...+|||+|||+|..+-.+..
T Consensus 219 ~~~~Qd~~s~~~~~~L~~-~-~g~~VLDlcag~G~kt~~la~ 258 (426)
T TIGR00563 219 WVTVQDASAQWVATWLAP-Q-NEETILDACAAPGGKTTHILE 258 (426)
T ss_pred eEEEECHHHHHHHHHhCC-C-CCCeEEEeCCCccHHHHHHHH
Confidence 346788888888877753 2 357999999999987766643
No 143
>PTZ00146 fibrillarin; Provisional
Probab=80.14 E-value=1.4 Score=37.21 Aligned_cols=37 Identities=11% Similarity=0.138 Sum_probs=25.0
Q ss_pred HHHHHHHHhhhHhhhc-cCCeEEEEccCccHHHHHHhc
Q 032981 75 DAVAENLLDRLEDCRK-TFPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 75 ~eVAerL~DRL~~IkR-~f~~aLDLGcgtG~l~~~L~~ 111 (129)
.-.|.-++-=|..+.. .-.+|||||||+|.++..+..
T Consensus 115 SKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAd 152 (293)
T PTZ00146 115 SKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSD 152 (293)
T ss_pred cHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHH
Confidence 3344445555555533 345899999999999888754
No 144
>PHA03411 putative methyltransferase; Provisional
Probab=79.65 E-value=1.8 Score=36.31 Aligned_cols=20 Identities=10% Similarity=-0.037 Sum_probs=16.4
Q ss_pred CCeEEEEccCccHHHHHHhc
Q 032981 92 FPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 92 f~~aLDLGcgtG~l~~~L~~ 111 (129)
..+|||+|||+|.+...+..
T Consensus 65 ~grVLDLGcGsGilsl~la~ 84 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLH 84 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHH
Confidence 46899999999988776644
No 145
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=79.42 E-value=1.4 Score=37.38 Aligned_cols=21 Identities=14% Similarity=0.097 Sum_probs=17.0
Q ss_pred cCCeEEEEccCccHHHHHHhc
Q 032981 91 TFPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L~~ 111 (129)
...++||||||+|.+...|..
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~ 134 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGV 134 (321)
T ss_pred CCceEEEecCCccHHHHHHHh
Confidence 356899999999988877743
No 146
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=78.96 E-value=2.6 Score=36.03 Aligned_cols=37 Identities=16% Similarity=0.140 Sum_probs=27.4
Q ss_pred HHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccCC
Q 032981 76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRVV 114 (129)
Q Consensus 76 eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g~ 114 (129)
+|.+.+.++- + -+..+.+|++|.|||.++..|-+.|+
T Consensus 45 ~v~~~I~~ka-~-~k~tD~VLEvGPGTGnLT~~lLe~~k 81 (315)
T KOG0820|consen 45 LVIDQIVEKA-D-LKPTDVVLEVGPGTGNLTVKLLEAGK 81 (315)
T ss_pred HHHHHHHhcc-C-CCCCCEEEEeCCCCCHHHHHHHHhcC
Confidence 5566666653 3 25788999999999999998855443
No 147
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=78.87 E-value=2.1 Score=35.33 Aligned_cols=31 Identities=32% Similarity=0.275 Sum_probs=22.7
Q ss_pred HHhhhHhhhccCCeEEEEccCccHHHHHHhcc
Q 032981 81 LLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 81 L~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
|+-....+.. -.+|||||||+|.+.=.|.++
T Consensus 35 LL~~~~~~~~-~~~IlDlGaG~G~l~L~la~r 65 (248)
T COG4123 35 LLAAFAPVPK-KGRILDLGAGNGALGLLLAQR 65 (248)
T ss_pred HHHhhccccc-CCeEEEecCCcCHHHHHHhcc
Confidence 3444444443 679999999999998888765
No 148
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=78.43 E-value=1.7 Score=33.58 Aligned_cols=23 Identities=9% Similarity=-0.218 Sum_probs=17.7
Q ss_pred CCeEEEEccCccHHHHHHhccCC
Q 032981 92 FPTALCLGGSLEAVRRLLRGRVV 114 (129)
Q Consensus 92 f~~aLDLGcgtG~l~~~L~~~g~ 114 (129)
-.++||++||+|.+.-.+..+|.
T Consensus 50 g~~vLDLfaGsG~lglea~srga 72 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGA 72 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCC
Confidence 46799999999988776655443
No 149
>PLN02672 methionine S-methyltransferase
Probab=78.40 E-value=1.7 Score=42.48 Aligned_cols=20 Identities=15% Similarity=0.049 Sum_probs=17.0
Q ss_pred CeEEEEccCccHHHHHHhcc
Q 032981 93 PTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 93 ~~aLDLGcgtG~l~~~L~~~ 112 (129)
.+|||||||+|.++-.|.+.
T Consensus 120 ~~VLDlG~GSG~Iai~La~~ 139 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEK 139 (1082)
T ss_pred CEEEEEecchHHHHHHHHHH
Confidence 57999999999998887543
No 150
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=78.28 E-value=2.3 Score=35.02 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=21.2
Q ss_pred HhhhHhhhccCCeEEEEccCccHHHHHH
Q 032981 82 LDRLEDCRKTFPTALCLGGSLEAVRRLL 109 (129)
Q Consensus 82 ~DRL~~IkR~f~~aLDLGcgtG~l~~~L 109 (129)
+|-|.++.+.--.+||+|+|+|+++...
T Consensus 73 le~L~~~L~pG~s~LdvGsGSGYLt~~~ 100 (237)
T KOG1661|consen 73 LEYLDDHLQPGASFLDVGSGSGYLTACF 100 (237)
T ss_pred HHHHHHhhccCcceeecCCCccHHHHHH
Confidence 3444555556778999999999998865
No 151
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=78.04 E-value=3 Score=36.76 Aligned_cols=20 Identities=10% Similarity=-0.225 Sum_probs=15.9
Q ss_pred cCCeEEEEccCccHHHHHHh
Q 032981 91 TFPTALCLGGSLEAVRRLLR 110 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L~ 110 (129)
...++||.+||+|.+.-.+.
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~ 50 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALL 50 (524)
T ss_pred cceEEEeCCCCccHHHHHHH
Confidence 34589999999998876653
No 152
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=77.96 E-value=2 Score=34.58 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=22.9
Q ss_pred HHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981 80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 80 rL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~ 111 (129)
+|.|+- .+-+.-.+|+|||+.+|.|++.+.+
T Consensus 35 el~~k~-~i~~~~~~ViDLGAAPGgWsQva~~ 65 (205)
T COG0293 35 ELNEKF-KLFKPGMVVVDLGAAPGGWSQVAAK 65 (205)
T ss_pred HHHHhc-CeecCCCEEEEcCCCCCcHHHHHHH
Confidence 345555 3344578999999999999997754
No 153
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=77.01 E-value=2.5 Score=38.34 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=18.6
Q ss_pred CCeEEEEccCccHHHHHHhccC
Q 032981 92 FPTALCLGGSLEAVRRLLRGRV 113 (129)
Q Consensus 92 f~~aLDLGcgtG~l~~~L~~~g 113 (129)
-..+||+|||+|.+...|..++
T Consensus 118 iR~~LDvGcG~aSF~a~l~~r~ 139 (506)
T PF03141_consen 118 IRTALDVGCGVASFGAYLLERN 139 (506)
T ss_pred eEEEEeccceeehhHHHHhhCC
Confidence 3489999999999999987763
No 154
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=76.34 E-value=10 Score=29.85 Aligned_cols=57 Identities=16% Similarity=0.046 Sum_probs=33.1
Q ss_pred CHHHHHHHHhHhhhcCCCCh-HHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHh
Q 032981 52 DRHLKRKQRDRAAWLTRPND-SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLR 110 (129)
Q Consensus 52 DR~~vr~~r~RAA~~y~~~~-fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~ 110 (129)
+...++.-+.++........ -+-.+.+. ++..|.... .+.+||+||+++|+-+-.+.
T Consensus 7 ~~~~l~~l~~~t~~~~~~~~~~i~~~~g~-lL~~l~~~~-~~k~vLEIGt~~GySal~la 64 (205)
T PF01596_consen 7 EPELLKELREFTRENQGLPQMSISPETGQ-LLQMLVRLT-RPKRVLEIGTFTGYSALWLA 64 (205)
T ss_dssp STHHHHHHHHHHHCTTTTGGGSHHHHHHH-HHHHHHHHH-T-SEEEEESTTTSHHHHHHH
T ss_pred CCHHHHHHHHHHHhCcCCCCCccCHHHHH-HHHHHHHhc-CCceEEEeccccccHHHHHH
Confidence 44555555566554332222 23444444 555555443 58999999999998766653
No 155
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=75.02 E-value=3.9 Score=31.85 Aligned_cols=34 Identities=12% Similarity=0.046 Sum_probs=20.3
Q ss_pred ChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccH
Q 032981 70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEA 104 (129)
Q Consensus 70 ~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~ 104 (129)
.++..+.+.|.|. =+..+.....+++|+|+|.|.
T Consensus 28 ~~~~~~Hi~DSL~-~~~~~~~~~~~~lDiGSGaGf 61 (184)
T PF02527_consen 28 EEIWERHILDSLA-LLPFLPDFGKKVLDIGSGAGF 61 (184)
T ss_dssp HHHHHHHHHHHHG-GGGCS-CCCSEEEEETSTTTT
T ss_pred HHHHHHHHHHHHH-hhhhhccCCceEEecCCCCCC
Confidence 3556666666554 233333333389999999984
No 156
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=74.80 E-value=3 Score=31.52 Aligned_cols=24 Identities=13% Similarity=-0.190 Sum_probs=16.6
Q ss_pred hccCCeEEEEccCccHHHHHHhcc
Q 032981 89 RKTFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 89 kR~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
.....+||+||||+|...-.+...
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~ 66 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKL 66 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT
T ss_pred hcCCceEEEECCccchhHHHHHhc
Confidence 345679999999999766555443
No 157
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=74.64 E-value=3 Score=34.90 Aligned_cols=26 Identities=12% Similarity=-0.006 Sum_probs=17.5
Q ss_pred HhhhccCCeEEEEccCccHHHHHHhc
Q 032981 86 EDCRKTFPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 86 ~~IkR~f~~aLDLGcgtG~l~~~L~~ 111 (129)
..+...-..++|+|||+|..+..+..
T Consensus 28 a~~~~~h~~a~DvG~G~Gqa~~~iae 53 (261)
T KOG3010|consen 28 ASRTEGHRLAWDVGTGNGQAARGIAE 53 (261)
T ss_pred HhhCCCcceEEEeccCCCcchHHHHH
Confidence 33333344799999999976666544
No 158
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=73.45 E-value=4.1 Score=32.69 Aligned_cols=16 Identities=6% Similarity=0.005 Sum_probs=13.1
Q ss_pred eEEEEccCccHHHHHH
Q 032981 94 TALCLGGSLEAVRRLL 109 (129)
Q Consensus 94 ~aLDLGcgtG~l~~~L 109 (129)
+||+||||||..+..+
T Consensus 28 ~vLEiaSGtGqHa~~F 43 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYF 43 (204)
T ss_pred eEEEEcCCccHHHHHH
Confidence 5999999999766554
No 159
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=73.01 E-value=2.2 Score=36.09 Aligned_cols=40 Identities=8% Similarity=-0.029 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981 71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 71 ~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~ 111 (129)
.+++...-.....++..- +....|||||||-|.-...+..
T Consensus 43 NwvKs~LI~~~~~~~~~~-~~~~~VLDl~CGkGGDL~Kw~~ 82 (331)
T PF03291_consen 43 NWVKSVLIQKYAKKVKQN-RPGLTVLDLCCGKGGDLQKWQK 82 (331)
T ss_dssp HHHHHHHHHHHCHCCCCT-TTT-EEEEET-TTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcc-CCCCeEEEecCCCchhHHHHHh
Confidence 355555555554433321 2577999999998876666654
No 160
>PLN03075 nicotianamine synthase; Provisional
Probab=72.27 E-value=4.4 Score=34.14 Aligned_cols=18 Identities=6% Similarity=0.060 Sum_probs=14.6
Q ss_pred cCCeEEEEccCccHHHHH
Q 032981 91 TFPTALCLGGSLEAVRRL 108 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~ 108 (129)
.+.+|+|||||+|-++..
T Consensus 123 ~p~~VldIGcGpgpltai 140 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSI 140 (296)
T ss_pred CCCEEEEECCCCcHHHHH
Confidence 689999999998855444
No 161
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=71.31 E-value=4.1 Score=33.71 Aligned_cols=39 Identities=8% Similarity=-0.158 Sum_probs=25.3
Q ss_pred CChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHH
Q 032981 69 PNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLL 109 (129)
Q Consensus 69 ~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L 109 (129)
...-|...++.-|.... .++ ....+||.|||||.+.-..
T Consensus 162 ~~~~l~~~la~~~~~l~-~~~-~g~~vLDp~cGtG~~liea 200 (329)
T TIGR01177 162 KPGSMDPKLARAMVNLA-RVT-EGDRVLDPFCGTGGFLIEA 200 (329)
T ss_pred CCCCCCHHHHHHHHHHh-CCC-CcCEEEECCCCCCHHHHHH
Confidence 34445556666666433 332 4568999999999876544
No 162
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=70.20 E-value=2.8 Score=36.32 Aligned_cols=36 Identities=14% Similarity=-0.026 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHH
Q 032981 72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLL 109 (129)
Q Consensus 72 fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L 109 (129)
++|++.+.-....|. + ....+|||+|||+|..+-.+
T Consensus 233 ~vqd~~s~l~~~~l~-~-~~g~~VLDlgaG~G~kt~~l 268 (445)
T PRK14904 233 SVQNPTQALACLLLN-P-QPGSTVLDLCAAPGGKSTFM 268 (445)
T ss_pred EEeCHHHHHHHHhcC-C-CCCCEEEEECCCCCHHHHHH
Confidence 455555554443332 2 23468999999999765544
No 163
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=68.75 E-value=4.4 Score=32.71 Aligned_cols=19 Identities=16% Similarity=0.158 Sum_probs=16.3
Q ss_pred CeEEEEccCccHHHHHHhc
Q 032981 93 PTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 93 ~~aLDLGcgtG~l~~~L~~ 111 (129)
+.+||||||.|.+.-.+.+
T Consensus 50 pi~lEIGfG~G~~l~~~A~ 68 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAK 68 (227)
T ss_pred cEEEEECCCCCHHHHHHHH
Confidence 6899999999988877754
No 164
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=67.99 E-value=3 Score=36.03 Aligned_cols=38 Identities=11% Similarity=-0.082 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHh
Q 032981 71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLR 110 (129)
Q Consensus 71 ~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~ 110 (129)
-++|++.+.-+..-|. + ....+|||+|||+|..+-.+.
T Consensus 234 ~~~qd~~s~l~~~~l~-~-~~g~~VLDl~ag~G~kt~~la 271 (434)
T PRK14901 234 WTVQDRSAQLVAPLLD-P-QPGEVILDACAAPGGKTTHIA 271 (434)
T ss_pred EEEECHHHHHHHHHhC-C-CCcCEEEEeCCCCchhHHHHH
Confidence 3556676666665442 2 235789999999998776664
No 165
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=67.05 E-value=7.3 Score=33.73 Aligned_cols=33 Identities=6% Similarity=-0.229 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHH
Q 032981 72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRL 108 (129)
Q Consensus 72 fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~ 108 (129)
||-++.......++. ...+|||+|||+|.++-.
T Consensus 205 flDqr~~R~~~~~~~----~g~rVLDlfsgtG~~~l~ 237 (396)
T PRK15128 205 YLDQRDSRLATRRYV----ENKRVLNCFSYTGGFAVS 237 (396)
T ss_pred ChhhHHHHHHHHHhc----CCCeEEEeccCCCHHHHH
Confidence 444444444444332 356899999999987543
No 166
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=66.95 E-value=3.9 Score=25.48 Aligned_cols=12 Identities=17% Similarity=0.202 Sum_probs=10.5
Q ss_pred EEEEccCccHHH
Q 032981 95 ALCLGGSLEAVR 106 (129)
Q Consensus 95 aLDLGcgtG~l~ 106 (129)
++|+|||+|...
T Consensus 52 ~ld~~~g~g~~~ 63 (257)
T COG0500 52 VLDIGCGTGRLA 63 (257)
T ss_pred eEEecCCcCHHH
Confidence 999999999843
No 167
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=66.93 E-value=3.4 Score=35.93 Aligned_cols=40 Identities=3% Similarity=-0.164 Sum_probs=26.9
Q ss_pred CChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHh
Q 032981 69 PNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLR 110 (129)
Q Consensus 69 ~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~ 110 (129)
+.-++|++.+.-+..-| .++ ...+|||+|||+|..+-.+.
T Consensus 217 G~~~~Qd~~s~~~~~~l-~~~-~g~~VLD~cagpGgkt~~la 256 (431)
T PRK14903 217 GLATVQGESSQIVPLLM-ELE-PGLRVLDTCAAPGGKTTAIA 256 (431)
T ss_pred CeEEEECHHHHHHHHHh-CCC-CCCEEEEeCCCccHHHHHHH
Confidence 34577888776555433 332 35689999999997665543
No 168
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=66.08 E-value=8.6 Score=30.54 Aligned_cols=27 Identities=15% Similarity=-0.039 Sum_probs=18.2
Q ss_pred HHhhhHhhhccCCeEEEEccCccHHHHH
Q 032981 81 LLDRLEDCRKTFPTALCLGGSLEAVRRL 108 (129)
Q Consensus 81 L~DRL~~IkR~f~~aLDLGcgtG~l~~~ 108 (129)
++..|..+. .+.++||+|||+|+.+-.
T Consensus 59 ~L~~l~~~~-~~~~vLEiGt~~G~s~l~ 85 (234)
T PLN02781 59 FLSMLVKIM-NAKNTLEIGVFTGYSLLT 85 (234)
T ss_pred HHHHHHHHh-CCCEEEEecCcccHHHHH
Confidence 333444433 488999999999985443
No 169
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=66.05 E-value=5.2 Score=32.17 Aligned_cols=38 Identities=5% Similarity=-0.169 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHh
Q 032981 71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLR 110 (129)
Q Consensus 71 ~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~ 110 (129)
-++|+..+.-... +.++ ....+|||+|||+|..+-.+.
T Consensus 53 ~~~qd~~s~~~~~-~l~~-~~g~~VLDl~ag~G~kt~~la 90 (264)
T TIGR00446 53 YYIQEASSMIPPL-ALEP-DPPERVLDMAAAPGGKTTQIS 90 (264)
T ss_pred EEEECHHHHHHHH-HhCC-CCcCEEEEECCCchHHHHHHH
Confidence 3455555543332 2233 345789999999998876653
No 170
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=64.32 E-value=5 Score=32.87 Aligned_cols=29 Identities=14% Similarity=0.018 Sum_probs=20.9
Q ss_pred HhhhHhhhccCCeEEEEccCccHHHHHHhc
Q 032981 82 LDRLEDCRKTFPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 82 ~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~ 111 (129)
-|+-..+ +.-++|||+||.+|.|++.-.+
T Consensus 61 ndKy~~l-~p~~~VlD~G~APGsWsQVavq 89 (232)
T KOG4589|consen 61 NDKYRFL-RPEDTVLDCGAAPGSWSQVAVQ 89 (232)
T ss_pred hhhcccc-CCCCEEEEccCCCChHHHHHHH
Confidence 3444443 3467999999999999987643
No 171
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=63.04 E-value=6 Score=33.16 Aligned_cols=21 Identities=24% Similarity=0.097 Sum_probs=17.6
Q ss_pred cCCeEEEEccCccHHHHHHhc
Q 032981 91 TFPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L~~ 111 (129)
...++||||+|.|.++..+..
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~ 114 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAP 114 (265)
T ss_pred cCCceEEecCCCcHHHHHHHh
Confidence 356799999999999988754
No 172
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=61.92 E-value=6.6 Score=32.62 Aligned_cols=19 Identities=16% Similarity=0.125 Sum_probs=13.1
Q ss_pred cCCeEEEEccCccHHHHHH
Q 032981 91 TFPTALCLGGSLEAVRRLL 109 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L 109 (129)
.+.+|+|||||.--++--+
T Consensus 105 ~p~sVlDigCGlNPlalp~ 123 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPW 123 (251)
T ss_dssp --SEEEEET-TTCHHHHHT
T ss_pred CCchhhhhhccCCceehhh
Confidence 4789999999998776544
No 173
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=61.77 E-value=6.5 Score=32.77 Aligned_cols=42 Identities=10% Similarity=0.079 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhhhHhhh-ccCCeEEEEccCccHHHHHHhccCCcch
Q 032981 72 SFVDAVAENLLDRLEDCR-KTFPTALCLGGSLEAVRRLLRGRVVLQK 117 (129)
Q Consensus 72 fLq~eVAerL~DRL~~Ik-R~f~~aLDLGcgtG~l~~~L~~~g~v~~ 117 (129)
|...|++-.+ .... -++.+||.||.|.|..++.+-+...+++
T Consensus 60 ~~yhEml~h~----~~~ah~~pk~VLiiGgGdG~tlRevlkh~~ve~ 102 (282)
T COG0421 60 FIYHEMLAHV----PLLAHPNPKRVLIIGGGDGGTLREVLKHLPVER 102 (282)
T ss_pred HHHHHHHHhc----hhhhCCCCCeEEEECCCccHHHHHHHhcCCcce
Confidence 4444444433 3333 3467999999999999998876655443
No 174
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=61.37 E-value=13 Score=30.00 Aligned_cols=31 Identities=10% Similarity=0.059 Sum_probs=19.7
Q ss_pred ChHHHHHHHHHHHhhhHhhhc-c--CCeEEEEccCccH
Q 032981 70 NDSFVDAVAENLLDRLEDCRK-T--FPTALCLGGSLEA 104 (129)
Q Consensus 70 ~~fLq~eVAerL~DRL~~IkR-~--f~~aLDLGcgtG~ 104 (129)
.+++++.+-|.+ ..+.- + +.+++|||+|.|.
T Consensus 47 ~e~~~rHilDSl----~~~~~~~~~~~~~~DIGSGaGf 80 (215)
T COG0357 47 EELWQRHILDSL----VLLPYLDGKAKRVLDIGSGAGF 80 (215)
T ss_pred HHHHHHHHHHHh----hhhhcccccCCEEEEeCCCCCC
Confidence 355555555544 33332 2 5899999999994
No 175
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=60.99 E-value=7.9 Score=31.14 Aligned_cols=24 Identities=21% Similarity=0.141 Sum_probs=19.8
Q ss_pred cCCeEEEEccCccHHHHHHhccCC
Q 032981 91 TFPTALCLGGSLEAVRRLLRGRVV 114 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L~~~g~ 114 (129)
.+.+||.||.|.|.....+.+...
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~ 99 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPP 99 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT
T ss_pred CcCceEEEcCCChhhhhhhhhcCC
Confidence 689999999999999999876553
No 176
>PLN02823 spermine synthase
Probab=58.59 E-value=7.3 Score=33.11 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=18.1
Q ss_pred cCCeEEEEccCccHHHHHHhcc
Q 032981 91 TFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
.+.+||.||+|.|.....+.+.
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~ 124 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRH 124 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhC
Confidence 5789999999999988866443
No 177
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=58.44 E-value=6.7 Score=33.13 Aligned_cols=47 Identities=9% Similarity=-0.056 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccCCcchhHHH
Q 032981 72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRVVLQKENFE 121 (129)
Q Consensus 72 fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g~v~~l~~~ 121 (129)
.|.+.+.+.+- +.+.-.-.++||+|||+|.-.-.....+.+....|+
T Consensus 100 dl~~~l~~e~~---~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD 146 (282)
T KOG2920|consen 100 DLLPYLKEEIG---AQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQD 146 (282)
T ss_pred HHHHHHHHHhh---hheEecCceeEecCCcccccchhhhhhccceeeeEe
Confidence 45555554442 233335678999999999654444333434444443
No 178
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=58.39 E-value=15 Score=30.51 Aligned_cols=36 Identities=22% Similarity=0.156 Sum_probs=25.3
Q ss_pred HHHHHhhhHhhhc--cCCeEEEEccCccHHHHHHhccC
Q 032981 78 AENLLDRLEDCRK--TFPTALCLGGSLEAVRRLLRGRV 113 (129)
Q Consensus 78 AerL~DRL~~IkR--~f~~aLDLGcgtG~l~~~L~~~g 113 (129)
|..|..=|+...- .-..+||+|+-||-+++.+-++|
T Consensus 64 ~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g 101 (245)
T COG1189 64 GLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG 101 (245)
T ss_pred HHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC
Confidence 4445554554443 35699999999999999886553
No 179
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=56.12 E-value=8.3 Score=32.63 Aligned_cols=21 Identities=14% Similarity=0.006 Sum_probs=17.8
Q ss_pred cCCeEEEEccCccHHHHHHhc
Q 032981 91 TFPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L~~ 111 (129)
.+..+|||||-.|.++..+.+
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak 78 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAK 78 (288)
T ss_pred CcceeEeccCCcchhHHHHHH
Confidence 366899999999999988854
No 180
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=55.89 E-value=9.4 Score=30.67 Aligned_cols=22 Identities=18% Similarity=0.122 Sum_probs=18.3
Q ss_pred CCeEEEEccCccHHHHHHhccC
Q 032981 92 FPTALCLGGSLEAVRRLLRGRV 113 (129)
Q Consensus 92 f~~aLDLGcgtG~l~~~L~~~g 113 (129)
.--||++|.|||.+++++-.+|
T Consensus 49 glpVlElGPGTGV~TkaIL~~g 70 (194)
T COG3963 49 GLPVLELGPGTGVITKAILSRG 70 (194)
T ss_pred CCeeEEEcCCccHhHHHHHhcC
Confidence 4468999999999999986554
No 181
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=54.94 E-value=21 Score=28.30 Aligned_cols=32 Identities=13% Similarity=0.088 Sum_probs=19.9
Q ss_pred HHHHHhhhHhhhc--cCCeEEEEccCccHHHHHH
Q 032981 78 AENLLDRLEDCRK--TFPTALCLGGSLEAVRRLL 109 (129)
Q Consensus 78 AerL~DRL~~IkR--~f~~aLDLGcgtG~l~~~L 109 (129)
|.-+.+-...... .+-.|+++|+|+|.++..+
T Consensus 3 a~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~di 36 (252)
T PF02636_consen 3 ARWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDI 36 (252)
T ss_dssp HHHHHHHHHHCT--SS-EEEEEES-TTSHHHHHH
T ss_pred HHHHHHHHHHcCCCCcCcEEEEECCCchHHHHHH
Confidence 4445555555433 2458999999999987765
No 182
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=53.86 E-value=21 Score=30.16 Aligned_cols=32 Identities=6% Similarity=0.023 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHH
Q 032981 72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRR 107 (129)
Q Consensus 72 fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~ 107 (129)
-|.++-+.+|+..+. ....++|+|||+|.=+.
T Consensus 61 ~iL~~~~~~Ia~~i~----~~~~lIELGsG~~~Kt~ 92 (319)
T TIGR03439 61 EILKKHSSDIAASIP----SGSMLVELGSGNLRKVG 92 (319)
T ss_pred HHHHHHHHHHHHhcC----CCCEEEEECCCchHHHH
Confidence 455666677776553 24479999999986444
No 183
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=52.31 E-value=13 Score=33.20 Aligned_cols=23 Identities=9% Similarity=-0.154 Sum_probs=18.2
Q ss_pred hccCCeEEEEccCccHHHHHHhc
Q 032981 89 RKTFPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 89 kR~f~~aLDLGcgtG~l~~~L~~ 111 (129)
.+.-+.+||||||.|.+.-.+..
T Consensus 345 ~~~~p~~lEIG~G~G~~~~~~A~ 367 (506)
T PRK01544 345 NEKRKVFLEIGFGMGEHFINQAK 367 (506)
T ss_pred CCCCceEEEECCCchHHHHHHHH
Confidence 34567999999999988777643
No 184
>PLN02476 O-methyltransferase
Probab=51.99 E-value=43 Score=27.89 Aligned_cols=20 Identities=5% Similarity=-0.135 Sum_probs=16.4
Q ss_pred cCCeEEEEccCccHHHHHHh
Q 032981 91 TFPTALCLGGSLEAVRRLLR 110 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L~ 110 (129)
.+.+|||||+++|+.+-.+.
T Consensus 118 ~ak~VLEIGT~tGySal~lA 137 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVA 137 (278)
T ss_pred CCCeEEEecCCCCHHHHHHH
Confidence 48899999999998766553
No 185
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=51.67 E-value=14 Score=29.23 Aligned_cols=22 Identities=14% Similarity=-0.179 Sum_probs=18.7
Q ss_pred CCeEEEEccCccHHHHHHhccC
Q 032981 92 FPTALCLGGSLEAVRRLLRGRV 113 (129)
Q Consensus 92 f~~aLDLGcgtG~l~~~L~~~g 113 (129)
..+||+.|||.|+-...|.+.|
T Consensus 38 ~~rvLvPgCG~g~D~~~La~~G 59 (218)
T PF05724_consen 38 GGRVLVPGCGKGYDMLWLAEQG 59 (218)
T ss_dssp SEEEEETTTTTSCHHHHHHHTT
T ss_pred CCeEEEeCCCChHHHHHHHHCC
Confidence 4589999999999988887654
No 186
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=51.38 E-value=15 Score=30.83 Aligned_cols=21 Identities=10% Similarity=-0.306 Sum_probs=17.3
Q ss_pred CCeEEEEccCccHHHHHHhcc
Q 032981 92 FPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 92 f~~aLDLGcgtG~l~~~L~~~ 112 (129)
...+||.+||.|..+..+.+.
T Consensus 20 g~~vlD~TlG~GGhS~~il~~ 40 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILER 40 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHh
Confidence 458999999999988877543
No 187
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=50.90 E-value=18 Score=33.40 Aligned_cols=21 Identities=10% Similarity=-0.333 Sum_probs=17.5
Q ss_pred CCeEEEEccCccHHHHHHhcc
Q 032981 92 FPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 92 f~~aLDLGcgtG~l~~~L~~~ 112 (129)
..+|||+|||+|.++-.+...
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~ 559 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALG 559 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHC
Confidence 568999999999998777654
No 188
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=50.71 E-value=30 Score=24.11 Aligned_cols=16 Identities=19% Similarity=0.034 Sum_probs=12.2
Q ss_pred CCeEEEEccCccHHHH
Q 032981 92 FPTALCLGGSLEAVRR 107 (129)
Q Consensus 92 f~~aLDLGcgtG~l~~ 107 (129)
+.+||.|||-+|+...
T Consensus 39 pK~VLViGaStGyGLA 54 (78)
T PF12242_consen 39 PKKVLVIGASTGYGLA 54 (78)
T ss_dssp -SEEEEES-SSHHHHH
T ss_pred CceEEEEecCCcccHH
Confidence 5799999999998654
No 189
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=50.13 E-value=19 Score=28.98 Aligned_cols=36 Identities=8% Similarity=-0.068 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHH
Q 032981 72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLL 109 (129)
Q Consensus 72 fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L 109 (129)
|-=..+++-|.+.+ . .....+|+|-.||+|.+.-..
T Consensus 29 ~TP~~i~~l~~~~~-~-~~~~~~VlDPacGsG~fL~~~ 64 (311)
T PF02384_consen 29 YTPREIVDLMVKLL-N-PKKGDSVLDPACGSGGFLVAA 64 (311)
T ss_dssp ---HHHHHHHHHHH-T-T-TTEEEEETT-TTSHHHHHH
T ss_pred ehHHHHHHHHHhhh-h-ccccceeechhhhHHHHHHHH
Confidence 45556666666555 2 223557999999999876554
No 190
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=49.69 E-value=24 Score=29.83 Aligned_cols=38 Identities=13% Similarity=0.031 Sum_probs=23.9
Q ss_pred HHHHHHHHhhhHhh-hccCCeEEEEccCccHHHHHHhcc
Q 032981 75 DAVAENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 75 ~eVAerL~DRL~~I-kR~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
..+++.|.+.+.+. ......+||+-||.|.++-.|...
T Consensus 179 ~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~ 217 (352)
T PF05958_consen 179 PEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKK 217 (352)
T ss_dssp HHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCC
T ss_pred HHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhh
Confidence 34555555554333 233458999999999998888653
No 191
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=48.78 E-value=13 Score=32.05 Aligned_cols=20 Identities=5% Similarity=-0.358 Sum_probs=16.3
Q ss_pred CCeEEEEccCccHHHHHHhc
Q 032981 92 FPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 92 f~~aLDLGcgtG~l~~~L~~ 111 (129)
..++||++||+|..+-.+..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~ 77 (382)
T PRK04338 58 RESVLDALSASGIRGIRYAL 77 (382)
T ss_pred CCEEEECCCcccHHHHHHHH
Confidence 35799999999998877643
No 192
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=48.17 E-value=22 Score=28.10 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=15.9
Q ss_pred HHHHHHhhhHhhhccCCeEEEEccCccHHH
Q 032981 77 VAENLLDRLEDCRKTFPTALCLGGSLEAVR 106 (129)
Q Consensus 77 VAerL~DRL~~IkR~f~~aLDLGcgtG~l~ 106 (129)
...++.+.+. ++ .-++.+|||||.|...
T Consensus 30 ~~~~il~~~~-l~-~~dvF~DlGSG~G~~v 57 (205)
T PF08123_consen 30 FVSKILDELN-LT-PDDVFYDLGSGVGNVV 57 (205)
T ss_dssp HHHHHHHHTT----TT-EEEEES-TTSHHH
T ss_pred HHHHHHHHhC-CC-CCCEEEECCCCCCHHH
Confidence 3344555543 33 3568999999999663
No 193
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=47.68 E-value=12 Score=28.92 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=28.8
Q ss_pred HHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccCC------cchhHHHHHHhhhc
Q 032981 78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRVV------LQKENFEFWRCLLK 128 (129)
Q Consensus 78 AerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g~------v~~l~~~~~~~~~~ 128 (129)
+..+.+-+... ...+.+|.-||+|.++-.+...+. +...+-.||+++++
T Consensus 9 ~~~I~~~ip~~--~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~~~l~ 63 (260)
T PF02086_consen 9 AKWIIELIPKN--KHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWKAVLK 63 (260)
T ss_dssp HHHHHHHS-S---S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHcCCC--CCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHHHHHh
Confidence 34444433332 688999999999999887743333 35667778987664
No 194
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=47.38 E-value=10 Score=31.54 Aligned_cols=18 Identities=17% Similarity=0.095 Sum_probs=14.8
Q ss_pred CeEEEEccCccHHHHHHh
Q 032981 93 PTALCLGGSLEAVRRLLR 110 (129)
Q Consensus 93 ~~aLDLGcgtG~l~~~L~ 110 (129)
..+|++|||||...+.+.
T Consensus 78 ~~vLEvgcGtG~Nfkfy~ 95 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYP 95 (252)
T ss_pred cceEEecccCCCCccccc
Confidence 367999999998877765
No 195
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=46.43 E-value=25 Score=28.98 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=12.1
Q ss_pred cCCeEEEEccCccHHHHHHhcc
Q 032981 91 TFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
...+.||||||+- +.+.|..+
T Consensus 56 ~g~~llDiGsGPt-iy~~lsa~ 76 (256)
T PF01234_consen 56 KGETLLDIGSGPT-IYQLLSAC 76 (256)
T ss_dssp -EEEEEEES-TT---GGGTTGG
T ss_pred CCCEEEEeCCCcH-HHhhhhHH
Confidence 4568999999984 44555443
No 196
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=46.02 E-value=16 Score=29.74 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=14.9
Q ss_pred ccCCeEEEEccCccHHHHHH
Q 032981 90 KTFPTALCLGGSLEAVRRLL 109 (129)
Q Consensus 90 R~f~~aLDLGcgtG~l~~~L 109 (129)
..+.++||.|+|-|.+++.|
T Consensus 54 ~~~~~alDcGAGIGRVTk~l 73 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGL 73 (218)
T ss_dssp ---SEEEEET-TTTHHHHHT
T ss_pred CCcceEEecccccchhHHHH
Confidence 35889999999999999876
No 197
>PRK00536 speE spermidine synthase; Provisional
Probab=44.87 E-value=21 Score=29.41 Aligned_cols=39 Identities=13% Similarity=0.073 Sum_probs=27.3
Q ss_pred ChHHHHHHHHHHHhhhHhhh-ccCCeEEEEccCccHHHHHHhcc
Q 032981 70 NDSFVDAVAENLLDRLEDCR-KTFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 70 ~~fLq~eVAerL~DRL~~Ik-R~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
..|+.+|+--.+. .+. -.+.+||.||+|.|..++.+-+.
T Consensus 54 dEfiYHEmLvHpp----l~~h~~pk~VLIiGGGDGg~~REvLkh 93 (262)
T PRK00536 54 FLHIESELLAHMG----GCTKKELKEVLIVDGFDLELAHQLFKY 93 (262)
T ss_pred hhhhHHHHHHHHH----HhhCCCCCeEEEEcCCchHHHHHHHCc
Confidence 4566666554443 332 36899999999999888877554
No 198
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=44.74 E-value=40 Score=29.61 Aligned_cols=40 Identities=13% Similarity=0.155 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHhhhHhhhcc-CCeEEEEccCccHHHHHHh
Q 032981 71 DSFVDAVAENLLDRLEDCRKT-FPTALCLGGSLEAVRRLLR 110 (129)
Q Consensus 71 ~fLq~eVAerL~DRL~~IkR~-f~~aLDLGcgtG~l~~~L~ 110 (129)
...=+-+|..+..-++.+.+. +-.+++||.|+|.+...+-
T Consensus 56 ~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL 96 (370)
T COG1565 56 QLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDIL 96 (370)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHH
Confidence 455567788888888888774 4479999999999877653
No 199
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=44.00 E-value=28 Score=30.20 Aligned_cols=20 Identities=25% Similarity=0.311 Sum_probs=17.3
Q ss_pred cCCeEEEEccCccHHHHHHh
Q 032981 91 TFPTALCLGGSLEAVRRLLR 110 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L~ 110 (129)
.+..++|+|+|.|.++..+-
T Consensus 177 ~v~~avDvGgGiG~v~k~ll 196 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLL 196 (342)
T ss_pred cCceEEEcCCcHhHHHHHHH
Confidence 37899999999999988773
No 200
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=43.98 E-value=21 Score=28.82 Aligned_cols=37 Identities=11% Similarity=-0.003 Sum_probs=25.5
Q ss_pred ChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhccC
Q 032981 70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRV 113 (129)
Q Consensus 70 ~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~~g 113 (129)
..+|.+...+ +.. ....+||+.|||.|.-...|...|
T Consensus 29 np~L~~~~~~-----l~~--~~~~rvLvPgCGkg~D~~~LA~~G 65 (226)
T PRK13256 29 NEFLVKHFSK-----LNI--NDSSVCLIPMCGCSIDMLFFLSKG 65 (226)
T ss_pred CHHHHHHHHh-----cCC--CCCCeEEEeCCCChHHHHHHHhCC
Confidence 4577666433 211 134699999999999999887654
No 201
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=41.26 E-value=26 Score=27.79 Aligned_cols=17 Identities=12% Similarity=-0.136 Sum_probs=14.4
Q ss_pred cCCeEEEEccCccHHHH
Q 032981 91 TFPTALCLGGSLEAVRR 107 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~ 107 (129)
+...++|||||.|-+.-
T Consensus 48 Egkkl~DLgcgcGmLs~ 64 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSI 64 (185)
T ss_pred cCcchhhhcCchhhhHH
Confidence 46689999999998873
No 202
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=40.23 E-value=33 Score=26.44 Aligned_cols=36 Identities=22% Similarity=0.071 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHhhhHhhhccCCeEEEEccCccHH-HHHHh
Q 032981 71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAV-RRLLR 110 (129)
Q Consensus 71 ~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l-~~~L~ 110 (129)
+-+.+.+-.-|..+ ...-.++|||-||+|.+ .++|.
T Consensus 26 drvrealFniL~~~----~~~g~~vLDLFaGSGalGlEALS 62 (183)
T PF03602_consen 26 DRVREALFNILQPR----NLEGARVLDLFAGSGALGLEALS 62 (183)
T ss_dssp HHHHHHHHHHHHCH-----HTT-EEEETT-TTSHHHHHHHH
T ss_pred HHHHHHHHHHhccc----ccCCCeEEEcCCccCccHHHHHh
Confidence 34444444444433 12466899999999977 44553
No 203
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=38.51 E-value=21 Score=30.17 Aligned_cols=18 Identities=22% Similarity=-0.119 Sum_probs=11.8
Q ss_pred CCeEEEEccCccHHHHHH
Q 032981 92 FPTALCLGGSLEAVRRLL 109 (129)
Q Consensus 92 f~~aLDLGcgtG~l~~~L 109 (129)
.=+|+|+||.+|..+=.+
T Consensus 17 ~~~iaD~GcS~G~Nsl~~ 34 (334)
T PF03492_consen 17 PFRIADLGCSSGPNSLLA 34 (334)
T ss_dssp EEEEEEES--SSHHHHHH
T ss_pred ceEEEecCCCCCccHHHH
Confidence 448999999999765443
No 204
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=38.29 E-value=19 Score=30.14 Aligned_cols=22 Identities=18% Similarity=0.058 Sum_probs=18.0
Q ss_pred ccCCeEEEEccCccHHHHHHhc
Q 032981 90 KTFPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 90 R~f~~aLDLGcgtG~l~~~L~~ 111 (129)
.++.++||||+|.|.++..+..
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p 132 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAP 132 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcc
Confidence 4567999999999998876654
No 205
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=36.08 E-value=43 Score=30.15 Aligned_cols=36 Identities=11% Similarity=0.105 Sum_probs=24.6
Q ss_pred HHHHhhhHhhhc--cCCeEEEEccCccHHHHHHhccCC
Q 032981 79 ENLLDRLEDCRK--TFPTALCLGGSLEAVRRLLRGRVV 114 (129)
Q Consensus 79 erL~DRL~~IkR--~f~~aLDLGcgtG~l~~~L~~~g~ 114 (129)
++|.|-+..|.. --+.++|+|.|.|++++.|.-..+
T Consensus 139 ~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~ 176 (476)
T KOG2651|consen 139 RRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYG 176 (476)
T ss_pred HHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccC
Confidence 445555554432 246899999999999999864333
No 206
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=35.47 E-value=23 Score=29.59 Aligned_cols=20 Identities=20% Similarity=0.082 Sum_probs=17.9
Q ss_pred cCCeEEEEccCccHHHHHHh
Q 032981 91 TFPTALCLGGSLEAVRRLLR 110 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L~ 110 (129)
.-.+|||.|.|+|.++..|.
T Consensus 94 pg~rVlEAGtGSG~lt~~La 113 (256)
T COG2519 94 PGSRVLEAGTGSGALTAYLA 113 (256)
T ss_pred CCCEEEEcccCchHHHHHHH
Confidence 56799999999999999886
No 207
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=34.91 E-value=1.9e+02 Score=22.50 Aligned_cols=53 Identities=4% Similarity=-0.029 Sum_probs=31.1
Q ss_pred CcCCHHHHHHHHhHhhhcCC-CChHHHHHHHHHHHhhhHhhhccCCeEEEEccCcc
Q 032981 49 SIFDRHLKRKQRDRAAWLTR-PNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLE 103 (129)
Q Consensus 49 ~IFDR~~vr~~r~RAA~~y~-~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG 103 (129)
.|+...+++.--..+ ..+. ....|.+.++..+.+.+...-....+|+.+ ||+|
T Consensus 2 ~i~t~~qm~~~d~~~-~~~gi~~~~LME~Ag~~va~~i~~~~~~~~~v~vl-~G~G 55 (205)
T TIGR00197 2 VVVSPKDMAIDKENA-EYLGLTLDLLMENAGKAVAQAVLQAFPLAGHVIIF-CGPG 55 (205)
T ss_pred ccCCHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEE-ECCC
Confidence 355666665543333 4322 246789999999888775432234566666 5544
No 208
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=34.61 E-value=38 Score=29.11 Aligned_cols=16 Identities=6% Similarity=-0.097 Sum_probs=13.3
Q ss_pred CCeEEEEccCccHHHH
Q 032981 92 FPTALCLGGSLEAVRR 107 (129)
Q Consensus 92 f~~aLDLGcgtG~l~~ 107 (129)
-..|.|+|||-+.++.
T Consensus 181 ~~vIaD~GCGEakiA~ 196 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIAS 196 (325)
T ss_pred ceEEEecccchhhhhh
Confidence 3478899999998875
No 209
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=33.86 E-value=45 Score=27.78 Aligned_cols=42 Identities=12% Similarity=0.123 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHhhhHh--hhccCCeEEEEccCccHHHHHHhcc
Q 032981 71 DSFVDAVAENLLDRLED--CRKTFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 71 ~fLq~eVAerL~DRL~~--IkR~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
+-..+-|-+.|.+.+.. -.+...+||.=|||.|.++-.+...
T Consensus 34 ~~~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~ 77 (270)
T PF07942_consen 34 DPCYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKL 77 (270)
T ss_pred HHHHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhc
Confidence 34444445555544432 2345679999999999998888665
No 210
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=33.72 E-value=27 Score=31.13 Aligned_cols=40 Identities=10% Similarity=-0.089 Sum_probs=27.3
Q ss_pred CChHHHHHHHHHHHhhhH-hhhccCCeEEEEccCccHHHHHH
Q 032981 69 PNDSFVDAVAENLLDRLE-DCRKTFPTALCLGGSLEAVRRLL 109 (129)
Q Consensus 69 ~~~fLq~eVAerL~DRL~-~IkR~f~~aLDLGcgtG~l~~~L 109 (129)
+.=|+|+..+.-...-|. ++ ....+|||+.+++|.=+-.+
T Consensus 91 G~~yvQd~sS~l~~~~L~~~~-~pg~~VLD~CAAPGgKTt~l 131 (470)
T PRK11933 91 GLFYIQEASSMLPVAALFADD-NAPQRVLDMAAAPGSKTTQI 131 (470)
T ss_pred CcEEEECHHHHHHHHHhccCC-CCCCEEEEeCCCccHHHHHH
Confidence 345778888876665442 22 35679999999999655544
No 211
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=33.47 E-value=22 Score=29.46 Aligned_cols=17 Identities=12% Similarity=0.001 Sum_probs=13.5
Q ss_pred eEEEEccCccHHHHHHh
Q 032981 94 TALCLGGSLEAVRRLLR 110 (129)
Q Consensus 94 ~aLDLGcgtG~l~~~L~ 110 (129)
..+|||||-|-+.-.|.
T Consensus 63 efaDIGCGyGGLlv~Ls 79 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLA 79 (249)
T ss_pred eEEeeccCccchhhhcc
Confidence 46899999997776664
No 212
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=33.32 E-value=53 Score=28.05 Aligned_cols=55 Identities=13% Similarity=0.055 Sum_probs=30.8
Q ss_pred HHHHHHHHhHhhhcCCC-Ch----HHHHHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHH
Q 032981 53 RHLKRKQRDRAAWLTRP-ND----SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLL 109 (129)
Q Consensus 53 R~~vr~~r~RAA~~y~~-~~----fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L 109 (129)
.+.|..-|++-|..||- .| -+|+.==+-..++|.--+ -..+||++||||-++=.+
T Consensus 59 e~~V~~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~--~m~~lDvaGGTGDiaFri 118 (296)
T KOG1540|consen 59 ERLVHHVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGK--GMKVLDVAGGTGDIAFRI 118 (296)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhhccCCCC--CCeEEEecCCcchhHHHH
Confidence 34556667777765443 11 122222222334454432 368999999999876554
No 213
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=32.72 E-value=21 Score=28.02 Aligned_cols=34 Identities=21% Similarity=0.105 Sum_probs=17.5
Q ss_pred CChHHHHHHHHHHHhhhHhhhccCCeEEEEccCccH
Q 032981 69 PNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEA 104 (129)
Q Consensus 69 ~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG~ 104 (129)
+.++|.+.|...+.++...- ..-+|..+||+||.
T Consensus 11 ~f~~l~~~vlp~~~~~~~~~--~~lrIWSagCStGe 44 (196)
T PF01739_consen 11 QFEALRDEVLPPLLARARPG--RPLRIWSAGCSTGE 44 (196)
T ss_dssp HHHHHHHHHH-------CS---S-EEEEETT-TTTH
T ss_pred HHHHHHHHHHHhhccccCCC--CCeEEEECCCCCCh
Confidence 35677777776555443321 45689999999994
No 214
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=32.71 E-value=36 Score=30.50 Aligned_cols=17 Identities=12% Similarity=0.090 Sum_probs=13.6
Q ss_pred CeEEEEccCccHHHHHH
Q 032981 93 PTALCLGGSLEAVRRLL 109 (129)
Q Consensus 93 ~~aLDLGcgtG~l~~~L 109 (129)
..+||+|||+|.++-.-
T Consensus 179 kiVlDVGaGSGILS~FA 195 (517)
T KOG1500|consen 179 KIVLDVGAGSGILSFFA 195 (517)
T ss_pred cEEEEecCCccHHHHHH
Confidence 48999999999876543
No 215
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=31.91 E-value=57 Score=25.06 Aligned_cols=46 Identities=24% Similarity=0.229 Sum_probs=29.5
Q ss_pred HHHHHHHHhhhHhhhccCCeEEEEccCccHHHHHHhc--cCCcchhHHHH
Q 032981 75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG--RVVLQKENFEF 122 (129)
Q Consensus 75 ~eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L~~--~g~v~~l~~~~ 122 (129)
++.++.|++-+........+|+.|||.+ +...|.+ ..++..+.+|+
T Consensus 9 ~~T~~~l~~~l~~~~~~~~~iaclstPs--l~~~l~~~~~~~~~~~Lle~ 56 (162)
T PF10237_consen 9 DETAEFLARELLDGALDDTRIACLSTPS--LYEALKKESKPRIQSFLLEY 56 (162)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEeCcH--HHHHHHhhcCCCccEEEEee
Confidence 4566777777767666778999999865 4455544 34555555543
No 216
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=31.13 E-value=20 Score=30.10 Aligned_cols=21 Identities=24% Similarity=0.203 Sum_probs=14.8
Q ss_pred CCeEEEEccCccHH-HHHHhcc
Q 032981 92 FPTALCLGGSLEAV-RRLLRGR 112 (129)
Q Consensus 92 f~~aLDLGcgtG~l-~~~L~~~ 112 (129)
+.+||++|||.|.. -+.|+..
T Consensus 72 ~~~ilEvGCGvGNtvfPll~~~ 93 (264)
T KOG2361|consen 72 AETILEVGCGVGNTVFPLLKTS 93 (264)
T ss_pred hhhheeeccCCCcccchhhhcC
Confidence 44799999999954 4555443
No 217
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.67 E-value=55 Score=26.10 Aligned_cols=30 Identities=17% Similarity=0.046 Sum_probs=19.8
Q ss_pred HHHHHhhhHhhhccC-CeEEEEccCccHHHH
Q 032981 78 AENLLDRLEDCRKTF-PTALCLGGSLEAVRR 107 (129)
Q Consensus 78 AerL~DRL~~IkR~f-~~aLDLGcgtG~l~~ 107 (129)
+|.+..=|+.....+ .+.+|||+|+|.+--
T Consensus 58 teQv~nVLSll~~n~~GklvDlGSGDGRiVl 88 (199)
T KOG4058|consen 58 TEQVENVLSLLRGNPKGKLVDLGSGDGRIVL 88 (199)
T ss_pred HHHHHHHHHHccCCCCCcEEeccCCCceeeh
Confidence 334444456655555 789999999996543
No 218
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=29.59 E-value=37 Score=30.47 Aligned_cols=32 Identities=22% Similarity=0.181 Sum_probs=21.9
Q ss_pred HHHHHHHhhhHhhhccCCeEEEEccCccHHHHHH
Q 032981 76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLL 109 (129)
Q Consensus 76 eVAerL~DRL~~IkR~f~~aLDLGcgtG~l~~~L 109 (129)
.+-++|..+..++ .+..+||+|.|+|...=++
T Consensus 100 asL~~L~~~~~df--apqsiLDvG~GPgtgl~A~ 131 (484)
T COG5459 100 ASLDELQKRVPDF--APQSILDVGAGPGTGLWAL 131 (484)
T ss_pred HHHHHHHHhCCCc--CcchhhccCCCCchhhhhh
Confidence 3445566666665 4778999999998665444
No 219
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=28.95 E-value=64 Score=27.76 Aligned_cols=24 Identities=13% Similarity=-0.092 Sum_probs=19.2
Q ss_pred cCCeEEEEccCcc-HHHHHHhccCC
Q 032981 91 TFPTALCLGGSLE-AVRRLLRGRVV 114 (129)
Q Consensus 91 ~f~~aLDLGcgtG-~l~~~L~~~g~ 114 (129)
.+-+||||-||+| ++.+.|.+...
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~ 159 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPE 159 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCC
Confidence 5779999999999 67888865543
No 220
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=28.50 E-value=30 Score=30.43 Aligned_cols=21 Identities=14% Similarity=-0.157 Sum_probs=14.5
Q ss_pred cCCeEEEEccCccHHHHHHhc
Q 032981 91 TFPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L~~ 111 (129)
.-+.++|||||-|--.-.+.+
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~k 137 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDK 137 (389)
T ss_pred cccccceeccCCcccHhHhhh
Confidence 345678999999865555544
No 221
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=27.81 E-value=63 Score=26.60 Aligned_cols=20 Identities=10% Similarity=0.072 Sum_probs=16.6
Q ss_pred CCeEEEEccCccHHHHHHhc
Q 032981 92 FPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 92 f~~aLDLGcgtG~l~~~L~~ 111 (129)
-...+++|||.|.++..+..
T Consensus 19 ~~~~vEfGaGrg~LS~~v~~ 38 (259)
T PF05206_consen 19 DSCFVEFGAGRGELSRWVAQ 38 (259)
T ss_pred CCEEEEECCCchHHHHHHHH
Confidence 44889999999999887754
No 222
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=27.51 E-value=55 Score=26.73 Aligned_cols=20 Identities=15% Similarity=0.061 Sum_probs=14.9
Q ss_pred cCCeEEEEccCccHHHHHHh
Q 032981 91 TFPTALCLGGSLEAVRRLLR 110 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L~ 110 (129)
...+||+.|.|+|.++-.|.
T Consensus 40 pG~~VlEaGtGSG~lt~~l~ 59 (247)
T PF08704_consen 40 PGSRVLEAGTGSGSLTHALA 59 (247)
T ss_dssp TT-EEEEE--TTSHHHHHHH
T ss_pred CCCEEEEecCCcHHHHHHHH
Confidence 57799999999999988874
No 223
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=26.77 E-value=43 Score=30.20 Aligned_cols=29 Identities=21% Similarity=0.155 Sum_probs=22.4
Q ss_pred ccCCeEEEEccCccHHHHHHhccCCcchh
Q 032981 90 KTFPTALCLGGSLEAVRRLLRGRVVLQKE 118 (129)
Q Consensus 90 R~f~~aLDLGcgtG~l~~~L~~~g~v~~l 118 (129)
+...++|.||+|+|...+.|.+-..++.+
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI 316 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQI 316 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceE
Confidence 34678999999999999988765545444
No 224
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=25.85 E-value=1e+02 Score=27.15 Aligned_cols=38 Identities=24% Similarity=0.095 Sum_probs=26.8
Q ss_pred HHHHHHHHhhhHhhhc--cCCeEEEEccCccHHHHHHhcc
Q 032981 75 DAVAENLLDRLEDCRK--TFPTALCLGGSLEAVRRLLRGR 112 (129)
Q Consensus 75 ~eVAerL~DRL~~IkR--~f~~aLDLGcgtG~l~~~L~~~ 112 (129)
..+++.|.+...+... .-+++||+=||.|.++-.|.+.
T Consensus 275 ~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~ 314 (432)
T COG2265 275 PAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR 314 (432)
T ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc
Confidence 3566666665554433 2368999999999999988743
No 225
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=25.68 E-value=34 Score=32.50 Aligned_cols=26 Identities=8% Similarity=-0.060 Sum_probs=18.8
Q ss_pred CCeEEEEccCccHHHHHHhccCCcch
Q 032981 92 FPTALCLGGSLEAVRRLLRGRVVLQK 117 (129)
Q Consensus 92 f~~aLDLGcgtG~l~~~L~~~g~v~~ 117 (129)
-..+|||+|.+|.|.+.-.+.=+|+.
T Consensus 45 a~~vlDLcaAPG~W~QVA~q~~pv~s 70 (780)
T KOG1098|consen 45 AHVVLDLCAAPGGWLQVASQSMPVGS 70 (780)
T ss_pred cchheeeccCCcHHHHHHHHhCCCCc
Confidence 46899999999999886644333433
No 226
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=23.64 E-value=1.5e+02 Score=25.19 Aligned_cols=56 Identities=18% Similarity=0.132 Sum_probs=36.5
Q ss_pred CHHHHHHHHhHhhhcCCCChHHHHHHHHHHHhhhHhhh--ccCCeEEEEccCccHHHHHHhc
Q 032981 52 DRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCR--KTFPTALCLGGSLEAVRRLLRG 111 (129)
Q Consensus 52 DR~~vr~~r~RAA~~y~~~~fLq~eVAerL~DRL~~Ik--R~f~~aLDLGcgtG~l~~~L~~ 111 (129)
=|..+...|-+|+.... ..||.|+ +|.|++.--. .+-+-+.+||.|+|.+++.+-.
T Consensus 13 iRe~i~lYRLqA~K~LS-QNfLMD~---~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~ 70 (326)
T KOG0821|consen 13 IREIIKLYRLQAAKQLS-QNFLMDL---RLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILN 70 (326)
T ss_pred HHHHHHHHHHHHHHHHh-HhHHhhh---HHHHHHHHhccccccceeEEecCCCCchhHHHHh
Confidence 37778888888876432 3677553 3444433221 2456789999999999888753
No 227
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=23.32 E-value=93 Score=25.76 Aligned_cols=16 Identities=19% Similarity=0.092 Sum_probs=12.7
Q ss_pred CeEEEEccCccHHHHH
Q 032981 93 PTALCLGGSLEAVRRL 108 (129)
Q Consensus 93 ~~aLDLGcgtG~l~~~ 108 (129)
+...|||.|+|.++-.
T Consensus 34 d~~~DLGaGsGiLs~~ 49 (252)
T COG4076 34 DTFADLGAGSGILSVV 49 (252)
T ss_pred hceeeccCCcchHHHH
Confidence 4579999999987643
No 228
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=22.96 E-value=2.5e+02 Score=22.80 Aligned_cols=19 Identities=5% Similarity=-0.164 Sum_probs=15.5
Q ss_pred cCCeEEEEccCccHHHHHH
Q 032981 91 TFPTALCLGGSLEAVRRLL 109 (129)
Q Consensus 91 ~f~~aLDLGcgtG~l~~~L 109 (129)
.+.+||+||+++|+-+-.+
T Consensus 79 ~ak~iLEiGT~~GySal~l 97 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLAT 97 (247)
T ss_pred CCCEEEEEeChhhHHHHHH
Confidence 5889999999999765544
No 229
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=22.16 E-value=2.6e+02 Score=25.75 Aligned_cols=68 Identities=13% Similarity=0.161 Sum_probs=40.4
Q ss_pred CCCCccCcCCHHHHHHHHhHhh-hcCC-CChHHHHHHHHHHHhhhHhhhcc--CCeEEEEccCcc-------HHHHHHhc
Q 032981 43 NGSSRVSIFDRHLKRKQRDRAA-WLTR-PNDSFVDAVAENLLDRLEDCRKT--FPTALCLGGSLE-------AVRRLLRG 111 (129)
Q Consensus 43 ~~~~~~~IFDR~~vr~~r~RAA-~~y~-~~~fLq~eVAerL~DRL~~IkR~--f~~aLDLGcgtG-------~l~~~L~~ 111 (129)
+++.+..++..+.++.- ++.+ ..+. ..+-|.+.++..+++-+...-.. ..+|+.+ ||+| .+++.|..
T Consensus 83 ~~~~~~~ilt~~qmr~l-D~~ai~~~Gis~~~LME~AG~avA~~I~~~~~~~~~~~VlVl-cGpGNNGGDGLVaAR~L~~ 160 (544)
T PLN02918 83 SGSPPLSYLTQREAAEI-DETLMGPLGFSVDQLMELAGLSVAASIAEVYKPGEYSRVLAI-CGPGNNGGDGLVAARHLHH 160 (544)
T ss_pred cCCCceEEeCHHHHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcccccCCEEEEE-ECCCcCHHHHHHHHHHHHH
Confidence 33444567888877664 4433 2222 35689999999999877653221 2456665 6666 34555644
Q ss_pred c
Q 032981 112 R 112 (129)
Q Consensus 112 ~ 112 (129)
.
T Consensus 161 ~ 161 (544)
T PLN02918 161 F 161 (544)
T ss_pred C
Confidence 3
No 230
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=21.59 E-value=3.7e+02 Score=21.45 Aligned_cols=62 Identities=13% Similarity=-0.035 Sum_probs=35.5
Q ss_pred CCHHHHHHHHhHhhhc-CCCChHHHHHHHHHHHhhhHhhhcc--CCeEEEEccCcc-------HHHHHHhccC
Q 032981 51 FDRHLKRKQRDRAAWL-TRPNDSFVDAVAENLLDRLEDCRKT--FPTALCLGGSLE-------AVRRLLRGRV 113 (129)
Q Consensus 51 FDR~~vr~~r~RAA~~-y~~~~fLq~eVAerL~DRL~~IkR~--f~~aLDLGcgtG-------~l~~~L~~~g 113 (129)
+-.....+.-++++.. .-....|.+.++.-+.+.+...--. ..+++.+ ||+| ..++.|...|
T Consensus 5 ~~~~~~~~~~~~~~~~lg~~~~~LMEnAG~aVa~~i~~~~~~~~~~~v~vl-cG~GnNGGDG~VaAR~L~~~G 76 (203)
T COG0062 5 SSAAEMMAIDDLNAEALGLPLDILMENAGLAVARAILREYPLGRARRVLVL-CGPGNNGGDGLVAARHLKAAG 76 (203)
T ss_pred hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHcCcccCCEEEEE-ECCCCccHHHHHHHHHHHhCC
Confidence 3344445555555553 3556789999888888655442111 2236665 7776 3455666554
No 231
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=21.18 E-value=1.1e+02 Score=28.84 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=31.1
Q ss_pred ChHHHHHHHHHHHhhhHhhhc-cCCeEEEEccCccHHHHH
Q 032981 70 NDSFVDAVAENLLDRLEDCRK-TFPTALCLGGSLEAVRRL 108 (129)
Q Consensus 70 ~~fLq~eVAerL~DRL~~IkR-~f~~aLDLGcgtG~l~~~ 108 (129)
++--++.|-.-|.||..+-.. +..+++.+|+|.|-+.++
T Consensus 345 Y~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~ 384 (649)
T KOG0822|consen 345 YDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDA 384 (649)
T ss_pred HHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHH
Confidence 566788889999999877543 377889999999987664
No 232
>PRK10565 putative carbohydrate kinase; Provisional
Probab=20.86 E-value=4.8e+02 Score=23.38 Aligned_cols=53 Identities=13% Similarity=0.018 Sum_probs=33.7
Q ss_pred CcCCHHHHHHHHhHhhh-cCC-CChHHHHHHHHHHHhhhHhhhccCCeEEEEccCcc
Q 032981 49 SIFDRHLKRKQRDRAAW-LTR-PNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLE 103 (129)
Q Consensus 49 ~IFDR~~vr~~r~RAA~-~y~-~~~fLq~eVAerL~DRL~~IkR~f~~aLDLGcgtG 103 (129)
.|++...++.- ++.+. .+. ....|.+.++..+.+-+........+|+.+ ||+|
T Consensus 16 ~i~t~~~m~~~-d~~~~~~~gi~~~~LME~Ag~~va~~i~~~~~~~~~v~vl-~G~G 70 (508)
T PRK10565 16 SVWPADDIRRG-EREAADALGLTLYELMLRAGEAAFQVARSAYPDARHWLVL-CGHG 70 (508)
T ss_pred cCCCHHHHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCCeEEEE-EcCC
Confidence 38898888765 55443 333 356899999998887664422234566665 5555
No 233
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=20.23 E-value=1.1e+02 Score=28.94 Aligned_cols=44 Identities=23% Similarity=0.151 Sum_probs=25.3
Q ss_pred HHHHHHHHHhhhHhhhccCCeEEEEccCc-c-HHHHHHhccCCcchh
Q 032981 74 VDAVAENLLDRLEDCRKTFPTALCLGGSL-E-AVRRLLRGRVVLQKE 118 (129)
Q Consensus 74 q~eVAerL~DRL~~IkR~f~~aLDLGcgt-G-~l~~~L~~~g~v~~l 118 (129)
.+-|-.|++.-+..-+-.-.+||.+|||+ | .++..|... +|+++
T Consensus 320 lkLmkWRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~-GVg~I 365 (664)
T TIGR01381 320 LKLMKWRLHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGW-GVRHI 365 (664)
T ss_pred HHHHhhhcCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHc-CCCeE
Confidence 33444444433333233456799999996 5 566777654 45544
Done!