BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032982
(129 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 95.1 bits (235), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 22 VMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDV 81
V+ + W Q + + +S LVV+ +TA+WCGPC+FI P+ D A +V F+K+D
Sbjct: 18 VIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDT 77
Query: 82 DWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKR 127
D L A + I +PTF+ +K GK +D+VVGAKKDELQ K
Sbjct: 78 DELKSVASDW-AIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKH 122
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 95.1 bits (235), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 71/101 (70%), Gaps = 1/101 (0%)
Query: 21 LVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKID 80
+V+ +K ++ +Q +K++ ++V+I +TA+WCGPC+FI P ++A + F+K+D
Sbjct: 15 VVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVD 74
Query: 81 VDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQ 121
VD L E A+ ++ ++ +PTF+ +K G E D+VVGA+KD+LQ
Sbjct: 75 VDELKEVAEKYN-VEAMPTFLFIKDGAEADKVVGARKDDLQ 114
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
Query: 22 VMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDV 81
V+ + S QW Q E + + +LVVI +TA+WCGPC+ + P D A + + F+K+DV
Sbjct: 14 VISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVDV 73
Query: 82 DWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKT 124
D L A+ F ++ +PTF+ +K G DRVVGA K+EL K
Sbjct: 74 DELKPIAEQFS-VEAMPTFLFMKEGDVKDRVVGAIKEELTAKV 115
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 89.0 bits (219), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 17 AKTPLVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQF 76
A+ V+ +K ++ + K + +LV+I +TA+WCGPC+ I P ++A + F
Sbjct: 3 AEEGAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIF 62
Query: 77 IKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMK 123
+K+DVD L + A+A++ ++ +PTF+ +K G+++D VVG +KD++ K
Sbjct: 63 LKVDVDELKDVAEAYN-VEAMPTFLFIKDGEKVDSVVGGRKDDIHTK 108
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 62/102 (60%), Gaps = 1/102 (0%)
Query: 22 VMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDV 81
V+ + S QW Q E + + +LVVI +TA+WCGP + + P D A + + F+K+DV
Sbjct: 17 VISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPSRIMAPVFADLAKKFPNAVFLKVDV 76
Query: 82 DWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMK 123
D L A+ F ++ +PTF+ +K G DRVVGA K+EL K
Sbjct: 77 DELKPIAEQFS-VEAMPTFLFMKEGDVKDRVVGAIKEELTAK 117
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 85.9 bits (211), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 62/99 (62%), Gaps = 1/99 (1%)
Query: 22 VMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDV 81
V+ + W+ +E K S +L+V+ +TA+WC PCK I P + A + +V F+K+DV
Sbjct: 6 VIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDV 65
Query: 82 DWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDEL 120
D L A+ ++ ++ +PTF+ +K GK +D+ VGA KD L
Sbjct: 66 DELKAVAEEWN-VEAMPTFIFLKDGKLVDKTVGADKDGL 103
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 59/96 (61%), Gaps = 4/96 (4%)
Query: 21 LVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKID 80
+V +L+S ++ S A D+LVV+ + A WCGPCK I P ++ FA Y+D F K+D
Sbjct: 8 MVTQLKSASEYDS---ALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLD 64
Query: 81 VDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAK 116
VD + + A+ + + +PT + K GKE+ RVVGA
Sbjct: 65 VDEVSDVAQKAE-VSSMPTLIFYKGGKEVTRVVGAN 99
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 59/96 (61%), Gaps = 4/96 (4%)
Query: 21 LVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKID 80
+V +L+S ++ S A D+LVV+ + A WCGPCK I P ++ FA Y+D F K+D
Sbjct: 1 MVTQLKSASEYDS---ALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLD 57
Query: 81 VDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAK 116
VD + + A+ + + +PT + K GKE+ RVVGA
Sbjct: 58 VDEVSDVAQKAE-VSSMPTLIFYKGGKEVTRVVGAN 92
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 39 KQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLP 98
KQ+D+LV+ +Y A WCGPCK ++P++ Y DV+F+K DVD P+ AK + + +P
Sbjct: 28 KQNDKLVIDFY-ATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECE-VTAMP 85
Query: 99 TFVLVKRGKEIDRVVGAKKDELQ 121
TFVL K G+ I +++GA L+
Sbjct: 86 TFVLGKDGQLIGKIIGANPTALE 108
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 58/96 (60%), Gaps = 4/96 (4%)
Query: 21 LVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKID 80
+V +L+S ++ S A D+LVV+ + A WCGP K I P ++ FA Y+D F K+D
Sbjct: 9 MVTQLKSASEYDS---ALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLD 65
Query: 81 VDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAK 116
VD + + A+ + + +PT + K GKE+ RVVGA
Sbjct: 66 VDEVSDVAQKAE-VSSMPTLIFYKGGKEVTRVVGAN 100
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 58/95 (61%), Gaps = 4/95 (4%)
Query: 21 LVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKID 80
+V +L+S ++ S A D+LVV+ + A WCGP K I P ++ FA Y+D F K+D
Sbjct: 1 MVTQLKSASEYDS---ALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLD 57
Query: 81 VDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA 115
VD + + A+ + + +PT + K GKE+ RVVGA
Sbjct: 58 VDEVSDVAQKAE-VSSMPTLIFYKGGKEVTRVVGA 91
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 27 SKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPE 86
++ + S+++++ D+LVV+ + A WCGPCK I P ++ F+ Y F K+DVD L +
Sbjct: 3 TQFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGD 62
Query: 87 AAKAFDLIDVLPTFVLVKRGKEIDRVVGA 115
A+ + + +PT +L K GKE+ +VVGA
Sbjct: 63 VAQK-NEVSAMPTLLLFKNGKEVAKVVGA 90
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 27 SKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPE 86
++ + S+++++ D+LVV+ + A WCGPCK I P ++ F+ Y F K+DVD L +
Sbjct: 9 TQFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGD 68
Query: 87 AAKAFDLIDVLPTFVLVKRGKEIDRVVGA 115
A+ + + +PT +L K GKE+ +VVGA
Sbjct: 69 VAQK-NEVSAMPTLLLFKNGKEVAKVVGA 96
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 75.1 bits (183), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 64/104 (61%), Gaps = 5/104 (4%)
Query: 29 HQWRSQYEASKQ----SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL 84
+Q + Q + +KQ ++LVVI + A WCGPCK I P +++ + +DV F+K+DVD
Sbjct: 3 YQVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDVDEC 62
Query: 85 PEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRR 128
+ A+ + I +PTF+ +K G+++D + GA D+L EK +
Sbjct: 63 EDIAQD-NQIACMPTFLFMKNGQKLDSLSGANYDKLLELVEKNK 105
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 38 SKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVL 97
++ RL+V+ + A WCGPC+ I P V+ A +V+F K+DVD EAA + + +
Sbjct: 15 NENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEEAAAKYS-VTAM 73
Query: 98 PTFVLVKRGKEIDRVVGAKKDELQ 121
PTFV +K GKE+DR GA + +L+
Sbjct: 74 PTFVFIKDGKEVDRFSGANETKLR 97
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
Query: 25 LQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL 84
+ +K +W + + + ++V+ ++A WCGPCK I PY + + Y + F+ IDVD L
Sbjct: 29 ITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLVIDVDEL 88
Query: 85 PEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMK 123
+ + +++ I PTF ++ G+++D++VGA K EL K
Sbjct: 89 SDFSASWE-IKATPTFFFLRDGQQVDKLVGANKPELHKK 126
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 64/101 (63%), Gaps = 3/101 (2%)
Query: 21 LVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKID 80
+V +++SK ++ +A+ D+LVV+ ++A WCGPCK I+P+ + Y++V F+++D
Sbjct: 1 MVKQIESKTAFQEALDAA--GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVD 58
Query: 81 VDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQ 121
VD + A + + +PTF K+G+++ GA K++L+
Sbjct: 59 VDDCQDVASEXE-VKCMPTFQFFKKGQKVGEFSGANKEKLE 98
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 64/101 (63%), Gaps = 3/101 (2%)
Query: 21 LVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKID 80
+V +++SK ++ +A+ D+LVV+ ++A WCGPCK I+P+ + Y++V F+++D
Sbjct: 1 MVKQIESKTAFQEALDAA--GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVD 58
Query: 81 VDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQ 121
VD + A + + +PTF K+G+++ GA K++L+
Sbjct: 59 VDDCQDVASECE-VKCMPTFQFFKKGQKVGEFSGANKEKLE 98
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 64/101 (63%), Gaps = 3/101 (2%)
Query: 21 LVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKID 80
+V +++SK ++ +A+ D+LVV+ ++A WCGPCK I+P+ + Y++V F+++D
Sbjct: 1 MVKQIESKTAFQEALDAA--GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVD 58
Query: 81 VDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQ 121
VD + A + + +PTF K+G+++ GA K++L+
Sbjct: 59 VDDCQDVASECE-VKSMPTFQFFKKGQKVGEFSGANKEKLE 98
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 64/101 (63%), Gaps = 3/101 (2%)
Query: 21 LVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKID 80
+V +++SK ++ +A+ D+LVV+ ++A WCGPCK I+P+ + Y++V F+++D
Sbjct: 1 MVKQIESKTAFQEALDAA--GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVD 58
Query: 81 VDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQ 121
VD + A + + +PTF K+G+++ GA K++L+
Sbjct: 59 VDDCQDVASESE-VKSMPTFQFFKKGQKVGEFSGANKEKLE 98
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 73.2 bits (178), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 58/94 (61%), Gaps = 4/94 (4%)
Query: 22 VMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDV 81
++EL+ S E K ++LVV+ + A WCGPCK I P K+ + Y D F+K+DV
Sbjct: 6 LIELKQDGDLESLLEQHK--NKLVVVDFFATWCGPCKTIAPLFKELSEKY-DAIFVKVDV 62
Query: 82 DWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA 115
D L E A+ ++ I +PTF+ +K G+++ VVGA
Sbjct: 63 DKLEETARKYN-ISAMPTFIAIKNGEKVGDVVGA 95
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 73.2 bits (178), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 58/94 (61%), Gaps = 4/94 (4%)
Query: 22 VMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDV 81
++EL+ S E K ++LVV+ + A WCGPCK I P K+ + Y D F+K+DV
Sbjct: 15 LIELKQDGDLESLLEQHK--NKLVVVDFFATWCGPCKTIAPLFKELSEKY-DAIFVKVDV 71
Query: 82 DWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA 115
D L E A+ ++ I +PTF+ +K G+++ VVGA
Sbjct: 72 DKLEETARKYN-ISAMPTFIAIKNGEKVGDVVGA 104
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 63/101 (62%), Gaps = 3/101 (2%)
Query: 21 LVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKID 80
+V +++SK ++ +A+ D+LVV+ ++A WCGPCK I+P+ + Y++V F+++D
Sbjct: 1 MVKQIESKTAFQEALDAA--GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVD 58
Query: 81 VDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQ 121
VD + A + + PTF K+G+++ GA K++L+
Sbjct: 59 VDDCQDVASECE-VKCTPTFQFFKKGQKVGEFSGANKEKLE 98
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 64/101 (63%), Gaps = 3/101 (2%)
Query: 21 LVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKID 80
+V +++SK ++ +A+ D+LVV+ ++A WCGPCK I+P+ + Y++V F+++D
Sbjct: 1 MVKQIESKTAFQEALDAA--GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVD 58
Query: 81 VDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQ 121
V+ + A + + +PTF K+G+++ GA K++L+
Sbjct: 59 VNDCQDVASECE-VKCMPTFQFFKKGQKVGEFSGANKEKLE 98
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Query: 27 SKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPE 86
++ + S+++++ D+LVV+ + A WCGP K I P ++ F+ Y F K+DVD L +
Sbjct: 9 TQFKTASEFDSAIAQDKLVVVDFYATWCGPSKMIAPMIEKFSEQYPQADFYKLDVDELGD 68
Query: 87 AAKAFDLIDVLPTFVLVKRGKEIDRVVGA 115
A+ + + +PT +L K GKE+ +VVGA
Sbjct: 69 VAQK-NEVSAMPTLLLFKNGKEVAKVVGA 96
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 63/101 (62%), Gaps = 3/101 (2%)
Query: 21 LVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKID 80
+V +++SK ++ +A+ D+LVV+ ++A WCGPCK I+P+ + Y++V F+++D
Sbjct: 1 MVKQIESKTAFQEALDAA--GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVD 58
Query: 81 VDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQ 121
VD + A + + PTF K+G+++ GA K++L+
Sbjct: 59 VDDAQDVASEAE-VKATPTFQFFKKGQKVGEFSGANKEKLE 98
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
Query: 25 LQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL 84
+ +K +W + + + ++V+ ++A WCGP + I PY + + Y + F+ IDVD L
Sbjct: 29 ITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPSLMFLVIDVDEL 88
Query: 85 PEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMK 123
+ + +++ I PTF ++ G+++D++VGA K EL K
Sbjct: 89 SDFSASWE-IKATPTFFFLRDGQQVDKLVGANKPELHKK 126
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 63/101 (62%), Gaps = 3/101 (2%)
Query: 21 LVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKID 80
+V +++SK ++ +A+ D+LVV+ ++A WCGP K I+P+ + Y++V F+++D
Sbjct: 1 MVKQIESKTAFQEALDAA--GDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVD 58
Query: 81 VDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQ 121
VD + A + + +PTF K+G+++ GA K++L+
Sbjct: 59 VDDSQDVASESE-VKSMPTFQFFKKGQKVGEFSGANKEKLE 98
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 62/100 (62%), Gaps = 3/100 (3%)
Query: 22 VMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDV 81
V +++SK ++ +A+ D+LVV+ ++A WCGP K I+P+ + Y++V F+++DV
Sbjct: 13 VKQIESKTAFQEALDAA--GDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDV 70
Query: 82 DWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQ 121
D + A + + +PTF K+G+++ GA K++L+
Sbjct: 71 DDCQDVASECE-VKSMPTFQFFKKGQKVGEFSGANKEKLE 109
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 62/101 (61%), Gaps = 3/101 (2%)
Query: 21 LVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKID 80
+V +++SK ++ +A+ D+LVV+ ++A WCGP K I+P+ + Y++V F+++D
Sbjct: 1 MVKQIESKTAFQEALDAA--GDKLVVVDFSATWCGPAKMIKPFFHSLSEKYSNVIFLEVD 58
Query: 81 VDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQ 121
VD + A + + PTF K+G+++ GA K++L+
Sbjct: 59 VDDAQDVASEAE-VKATPTFQFFKKGQKVGEFSGANKEKLE 98
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 63/101 (62%), Gaps = 3/101 (2%)
Query: 21 LVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKID 80
+V +++SK ++ +A+ D+LVV+ ++A WCGP K I+P+ + Y++V F+++D
Sbjct: 1 MVKQIESKTAFQEALDAA--GDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVD 58
Query: 81 VDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQ 121
VD + A + + +PTF K+G+++ GA K++L+
Sbjct: 59 VDDCQDVASECE-VKRMPTFQFFKKGQKVGEFSGANKEKLE 98
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 57/95 (60%), Gaps = 1/95 (1%)
Query: 32 RSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAF 91
++++++ + LV++ + A WCGPCK I P+ ++ + YT + FIK+DVD + E +
Sbjct: 16 QAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEK- 74
Query: 92 DLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEK 126
+ I +PTF + K G +D ++GA L+ EK
Sbjct: 75 ENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEK 109
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAA-MYTDVQFIKIDVDWLPEAAKAFDLIDVLP 98
S++ V++ + A WCGPCK + P +++ A TD+ K+DVD PE A+ F ++ + P
Sbjct: 23 SSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSI-P 81
Query: 99 TFVLVKRGKEIDRVVGAK 116
T +L K G+ + R+VGAK
Sbjct: 82 TLILFKDGQPVKRIVGAK 99
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAA-MYTDVQFIKIDVDWLPEAAKAFDLIDVLP 98
S++ V++ + A WCGPCK + P +++ A TD+ K+DVD PE A+ F ++ + P
Sbjct: 28 SSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSI-P 86
Query: 99 TFVLVKRGKEIDRVVGAK 116
T +L K G+ + R+VGAK
Sbjct: 87 TLILFKDGQPVKRIVGAK 104
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 58/95 (61%), Gaps = 3/95 (3%)
Query: 21 LVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKID 80
+V +++SK ++ +A+ D+LVV+ ++A WCGPCK I+P+ + Y++V F+++D
Sbjct: 1 MVKQIESKTAFQEALDAA--GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVD 58
Query: 81 VDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA 115
VD + A + I +PT +L K G+ VGA
Sbjct: 59 VDDAQDVAPKYG-IRGIPTLLLFKNGEVAATKVGA 92
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 62/101 (61%), Gaps = 3/101 (2%)
Query: 21 LVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKID 80
+V +++SK ++ +A+ D+LVV+ ++A W GP K I+P+ + Y++V F+++D
Sbjct: 1 MVKQIESKTAFQEALDAA--GDKLVVVDFSATWSGPSKMIKPFFHSLSEKYSNVIFLEVD 58
Query: 81 VDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQ 121
VD + A + + +PTF K+G+++ GA K++L+
Sbjct: 59 VDDCQDVASECE-VKCMPTFQFFKKGQKVGEFSGANKEKLE 98
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 64/101 (63%), Gaps = 3/101 (2%)
Query: 21 LVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKID 80
+V +++SK ++ +A+ D+LVV+ ++A WCGPCK I+P+ + Y++V F+++D
Sbjct: 1 MVKQIESKTAFQEALDAA--GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVD 58
Query: 81 VDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQ 121
VD + A + + +PTF K+G+++ GA K++L+
Sbjct: 59 VDDXQDVASEXE-VKCMPTFQFFKKGQKVGEFSGANKEKLE 98
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 65.1 bits (157), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 5/109 (4%)
Query: 15 IHAKTPLVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDV 74
+ A+ P V+++ S Q+R+ D L V ++TA WCGPCK IE ++ A + V
Sbjct: 14 MRARYPSVVDVYSVEQFRNIM----SEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTV 69
Query: 75 QFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMK 123
+F K+D D E ++ LPTF++ + GK + V+GA L+ K
Sbjct: 70 KFAKVDADNNSEIVSKCRVLQ-LPTFIIARSGKMLGHVIGANPGMLRQK 117
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 17 AKTPLVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQ 75
A +V +++ K Q +K S +LVV+ + A WCGPCK I P + + + + D V
Sbjct: 2 AAAAMVYQVKDKADLDGQL--TKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVV 59
Query: 76 FIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQ 121
+K+DVD + A ++ I +PTFV +K G +++ GA L+
Sbjct: 60 VLKVDVDECEDIAMEYN-ISSMPTFVFLKNGVKVEEFAGANAKRLE 104
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 33 SQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAF 91
+ ++ + Q D+ V++ + AAWCGPC+ + P +++FA + D V K++VD PE F
Sbjct: 8 ANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQF 67
Query: 92 DLIDVLPTFVLVKRGKEIDRVVGAKKDE 119
++ + PT +L K G+ + +++G + E
Sbjct: 68 GIMSI-PTLILFKGGRPVKQLIGYQPKE 94
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAA-MYTDVQFIKIDVDWLPEAAKAFDLIDVLP 98
S++ V++ + A WCGP K + P +++ A TD+ K+DVD PE A+ F ++ + P
Sbjct: 25 SSNKPVLVDFWATWCGPSKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSI-P 83
Query: 99 TFVLVKRGKEIDRVVGAK 116
T +L K G+ + R+VGAK
Sbjct: 84 TLILFKDGQPVKRIVGAK 101
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 33 SQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAF 91
+ ++ + Q D+ V++ + AAWCGPC+ + P +++FA + D V K++VD PE F
Sbjct: 8 ANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQF 67
Query: 92 DLIDVLPTFVLVKRGKEIDRVVGAKKDE 119
++ + PT +L K G+ + +++G + E
Sbjct: 68 GIMSI-PTLILFKGGEPVKQLIGYQPKE 94
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 23 MELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDV 81
M Q K + + +K S +LVV+ + A WCGPCK I P + + + + D V +K+DV
Sbjct: 1 MVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDV 60
Query: 82 DWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQ 121
D + A ++ I +PTFV +K G +++ GA L+
Sbjct: 61 DECEDIAMEYN-ISSMPTFVFLKNGVKVEEFAGANAKRLE 99
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 34 QYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWLPEAAKAF 91
Q++ D++VVI + A WCGPCK I P + + V F K+DVD + A+
Sbjct: 25 QFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEV 84
Query: 92 DLIDVLPTFVLVKRGKEIDRVVGAKKDELQ 121
I +PTFV K G++ID VVGA +LQ
Sbjct: 85 G-IRAMPTFVFFKNGQKIDTVVGADPSKLQ 113
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 63.2 bits (152), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 33 SQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAF 91
+ ++ + Q D V++ + AAWCGPC+ + P +++FA + D V K++VD PE F
Sbjct: 8 ANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQF 67
Query: 92 DLIDVLPTFVLVKRGKEIDRVVGAKKDE 119
++ + PT +L K G+ + +++G + E
Sbjct: 68 GIMSI-PTLILFKGGRPVKQLIGYQPKE 94
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 33 SQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAF 91
+ ++ + Q D V++ + AAWCGPC+ + P +++FA + D V K++VD PE F
Sbjct: 8 ANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQF 67
Query: 92 DLIDVLPTFVLVKRGKEIDRVVGAKKDE 119
++ + PT +L K G+ + +++G + E
Sbjct: 68 GIMSI-PTLILFKGGEPVKQLIGYQPKE 94
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
Query: 22 VMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKID 80
V+ + SK W +Q K+ + +V+ +TA WCGPCK I P + + Y V F+K+D
Sbjct: 4 VIVIDSKAAWDAQLAKGKEEHKPIVVAFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVD 63
Query: 81 VDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKR 127
VD + A+A I +PTF + K G + D +VGA +D+L+ K
Sbjct: 64 VDAVAAVAEAAG-ITAMPTFHVYKDGVKADDLVGASQDKLKALVAKH 109
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
Query: 22 VMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKID 80
V+ + SK W +Q K+ + +V+ +TA WCGPCK I P + + Y V F+K+D
Sbjct: 4 VIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVD 63
Query: 81 VDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKR 127
VD + A+A I +PTF + K G + D +VGA +D+L+ K
Sbjct: 64 VDAVAAVAEAAG-ITAMPTFHVYKDGVKADDLVGASQDKLKALVAKH 109
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 38 SKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDV 96
SK + ++ + A WCGPCK I P +++ AA Y +K+DVD P A ++++ +
Sbjct: 16 SKVESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSI 75
Query: 97 LPTFVLVKRGKEIDRVVGAKKDE 119
PT ++ K G+ +D+VVG + E
Sbjct: 76 -PTLIVFKDGQPVDKVVGFQPKE 97
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 39 KQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLP 98
K++ LV++ + A WCGPC+ + + A DV FIK+DVD AA A+ + +
Sbjct: 20 KEAPGLVLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGNAADAYGVSSIPA 79
Query: 99 TFVLVKRGKEI---DRVVGAKKDELQMKTEK 126
F + K G EI D+ VGA ++ EK
Sbjct: 80 LFFVKKEGNEIKTLDQFVGADVSRIKADIEK 110
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 59/106 (55%), Gaps = 7/106 (6%)
Query: 22 VMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDV 81
V+ L SK+ +++ S + V+ + A WC PC + P +++ A Y V F K++
Sbjct: 1 VIHLDSKN-----FDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNS 55
Query: 82 DWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEK 126
D P+ A + ++ LPT + K G+ +D ++GA ++E++++ +
Sbjct: 56 DENPDIAARYGVMS-LPTVIFFKDGEPVDEIIGAVPREEIEIRIKN 100
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLP 98
++ LV++ + A WCGPCK I P + + + V K+++D PE A+ + +P
Sbjct: 18 KASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQ-VRSIP 76
Query: 99 TFVLVKRGKEIDRVVGA 115
T +LV+ GK ID+ VGA
Sbjct: 77 TLMLVRDGKVIDKKVGA 93
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 38 SKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDV 96
SK + ++ + A WCG CK I P +++ AA Y +K+DVD P A ++++ +
Sbjct: 16 SKVESGVQLVDFWATWCGTCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSI 75
Query: 97 LPTFVLVKRGKEIDRVVG 114
PT ++ K G+ +D+VVG
Sbjct: 76 -PTLIVFKDGQPVDKVVG 92
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 38 SKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDV 96
SK + ++ + A WCG CK I P +++ AA Y +K+DVD P A ++++ +
Sbjct: 15 SKVESGVQLVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSI 74
Query: 97 LPTFVLVKRGKEIDRVVG 114
PT ++ K G+ +D+VVG
Sbjct: 75 -PTLIVFKDGQPVDKVVG 91
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLP 98
++D+ V++ + AAWCGPC+ I P ++ AA Y D ++ +K+++D P A + ++ + P
Sbjct: 21 KNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSI-P 79
Query: 99 TFVLVKRGKEIDRVVGAK 116
T + + G+ +VGAK
Sbjct: 80 TLNVYQGGEVAKTIVGAK 97
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%)
Query: 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTF 100
D+ VV+ WCGPCK + P + A Y DV F+K+D + + I V+PTF
Sbjct: 36 GDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTF 95
Query: 101 VLVKRGKEIDRVVGAKKDELQMKTEKRRN 129
++K + V GAK D+L + R+
Sbjct: 96 KILKENSVVGEVTGAKYDKLLEAIQAARS 124
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLP 98
+SD+ V++ + A WCGPC+ I P +++ A Y V+ +K++VD P A + I +P
Sbjct: 17 KSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYG-IRSIP 75
Query: 99 TFVLVKRGKEIDRVVGAKKDE 119
T +L K G+ +DR+VGA+ E
Sbjct: 76 TLLLFKNGQVVDRLVGAQPKE 96
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%)
Query: 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTF 100
D+ VV+ WCGPCK + P + A Y DV F+K+D + + I V+PTF
Sbjct: 24 GDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTF 83
Query: 101 VLVKRGKEIDRVVGAKKDELQMKTEKRRN 129
++K + V GAK D+L + R+
Sbjct: 84 KILKENSVVGEVTGAKYDKLLEAIQAARS 112
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 38 SKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDV 96
SK + ++ + A CGPCK I P +++ AA Y +K+DVD P A ++++ +
Sbjct: 15 SKVESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSI 74
Query: 97 LPTFVLVKRGKEIDRVVG 114
PT ++ K G+ +D+VVG
Sbjct: 75 -PTLIVFKDGQPVDKVVG 91
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 55/97 (56%), Gaps = 2/97 (2%)
Query: 28 KHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEA 87
KH ++ +++VV+ + A WC PC + P +++ A Y V F K++ + +
Sbjct: 9 KHLNSKNFDEFITKNKIVVVDFWAEWCAPCLILAPVIEELANDYPQVAFGKLNTEESQDI 68
Query: 88 AKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMK 123
A + ++ LPT + K G+ +D+++GA ++E++++
Sbjct: 69 AMRYGIMS-LPTIMFFKNGELVDQILGAVPREEIEVR 104
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLP 98
+S V++ + A WCGPC+ I P V + A Y D ++ +K++ D P A + I +P
Sbjct: 17 ESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYG-IRSIP 75
Query: 99 TFVLVKRGKEIDRVVGA-KKDELQMKTEKRRN 129
T ++ K GK+ + ++GA K + EK N
Sbjct: 76 TIMVFKGGKKCETIIGAVPKATIVQTVEKYLN 107
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPT 99
++ L+V+++ A W C + + + A V F+K++ + +PE ++ ++ I +PT
Sbjct: 36 KAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYE-ISSVPT 94
Query: 100 FVLVKRGKEIDRVVGAKKDELQMKTEKR 127
F+ K ++IDR+ GA EL K ++
Sbjct: 95 FLFFKNSQKIDRLDGAHAPELTKKVQRH 122
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 34 QYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFD 92
Q +++ S+ +V+ + A WCGPCK I P +++ D ++ +KIDVD E A +
Sbjct: 9 QSFSAETSEGVVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYG 68
Query: 93 LIDVLPTFVLVKRGKEIDRVVGAKKDE 119
++ + PT +++K G+ ++ VG K E
Sbjct: 69 VMSI-PTLLVLKDGEVVETSVGFKPKE 94
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPT 99
++ L+V+++ A W C + + + A V F+K++ + +PE ++ ++ I +PT
Sbjct: 30 KAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYE-ISSVPT 88
Query: 100 FVLVKRGKEIDRVVGAKKDELQMKTEKR 127
F+ K ++IDR+ GA EL K ++
Sbjct: 89 FLFFKNSQKIDRLDGAHAPELTKKVQRH 116
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 44 LVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFI-KIDVDWLPEAAKAFDLIDVLPTFVL 102
LV++ + A WC PC+ I P +++ A Y + K+DVD P+ A + + + PT +L
Sbjct: 21 LVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPKTAXRYRVXSI-PTVIL 79
Query: 103 VKRGKEIDRVVGAK-KDELQMKTEK 126
K G+ ++ +VGA+ K Q K EK
Sbjct: 80 FKDGQPVEVLVGAQPKRNYQAKIEK 104
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 44 LVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFI-KIDVDWLPEAAKAFDLIDVLPTFVL 102
LV++ + A WC PC+ I P +++ A Y + K+DVD P+ A + + + PT +L
Sbjct: 20 LVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPKTAXRYRVXSI-PTVIL 78
Query: 103 VKRGKEIDRVVGAK-KDELQMKTEK 126
K G+ ++ +VGA+ K Q K EK
Sbjct: 79 FKDGQPVEVLVGAQPKRNYQAKIEK 103
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 38 SKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDV 96
SK + ++ + A WCG K I P +++ AA Y +K+DVD P A ++++ +
Sbjct: 16 SKVESGVQLVDFWATWCGTSKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSI 75
Query: 97 LPTFVLVKRGKEIDRVVG 114
PT ++ K G+ +D+VVG
Sbjct: 76 -PTLIVFKDGQPVDKVVG 92
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 17 AKTPLVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQ 75
KTPL +++ + +Q A L ++ + A WCGPC+ + P +++ A + ++
Sbjct: 28 CKTPLPWVVEADEKGFAQEVAGAP---LTLVDFFAPWCGPCRLVSPILEELARDHAGRLK 84
Query: 76 FIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA 115
+K++VD P A + + V PT VL +RG + VGA
Sbjct: 85 VVKVNVDEHPGLAARYGVRSV-PTLVLFRRGAPVATWVGA 123
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLP 98
++++ V++Y+ A+WCGPC+ + P + A Y+D ++ +K+++D P K + ++ +P
Sbjct: 23 KAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYK-VEGVP 81
Query: 99 TFVLVKRGKEIDRVVGA-KKDEL 120
LVK + +D G KD+L
Sbjct: 82 ALRLVKGEQILDSTEGVISKDKL 104
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%)
Query: 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTF 100
D+ VV+ WCGP K + P + A Y DV F+K+D + + I V+PTF
Sbjct: 23 GDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTF 82
Query: 101 VLVKRGKEIDRVVGAKKDELQMKTEKRRN 129
++K + V GAK D+L + R+
Sbjct: 83 KILKENSVVGEVTGAKYDKLLEAIQAARS 111
>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
pdb|3D6I|B Chain B, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
Length = 112
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
Query: 22 VMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFA--AMYTDVQFIKI 79
V+E+ + Q+ + + D+L+V+Y+ +W PCK ++ + + ++V F+ I
Sbjct: 2 VIEINDQEQF-TYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSI 60
Query: 80 DVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRRN 129
D D E ++ F+ I +P F+++ +G + + GA E E +N
Sbjct: 61 DADENSEISELFE-ISAVPYFIIIHKGTILKELSGADPKEYVSLLEDXKN 109
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLP 98
+S+ V++ + A WCGPCK I P + + A Y+ + K++ D P A ++ I +P
Sbjct: 15 ESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYN-IRSIP 73
Query: 99 TFVLVKRGKEIDRVVGA 115
T + K G+ + ++GA
Sbjct: 74 TVLFFKNGERKESIIGA 90
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLP 98
Q D VI + A WCGPC+ P + AA V+F+K++ + P + F I +P
Sbjct: 53 QDDLPXVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRF-RIRSIP 111
Query: 99 TFVLVKRGKEIDRVVGA 115
T L + GK ID + GA
Sbjct: 112 TIXLYRNGKXIDXLNGA 128
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLP 98
+S+ V++ + A WCGPCK I P + + A Y+ + K++ D P A ++ I +P
Sbjct: 16 ESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYN-IRSIP 74
Query: 99 TFVLVKRGKEIDRVVGA 115
T + K G+ + ++GA
Sbjct: 75 TVLFFKNGERKESIIGA 91
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAA-MYTDVQFIKIDVDWLPEAAKAFDLIDVLP 98
S+ VV+ + A WCGPCK + P ++ A + V K+D+D + A ++ + +P
Sbjct: 29 NSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYE-VSAVP 87
Query: 99 TFVLVKRGKEIDRVVGAKKDELQMK 123
T + +K G +D+ VG KDE Q++
Sbjct: 88 TVLAMKNGDVVDKFVGI-KDEDQLE 111
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 38 SKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAA-MYTDVQFIKIDVDWLPEAAKAFDLIDV 96
+++ D +++ + A WCGPC+ + P + AA + V+ KID P A I
Sbjct: 60 AERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHR-IQG 118
Query: 97 LPTFVLVKRGKEIDRVVGAK 116
+P F+L +G+E+ R GA+
Sbjct: 119 IPAFILFHKGRELARAAGAR 138
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 34 QYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDF-AAMYTDVQFIKIDVDWLPEAAKAFD 92
Q +++ S+ +V+ + A WCGP K I P +++ M ++ +KIDVD E A +
Sbjct: 9 QSFSAETSEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYG 68
Query: 93 LIDVLPTFVLVKRGKEIDRVVGAKKDE 119
++ + PT +++K G+ ++ VG K E
Sbjct: 69 VMSI-PTLLVLKDGEVVETSVGFKPKE 94
>pdb|1GH2|A Chain A, Crystal Structure Of The Catalytic Domain Of A New Human
Thioredoxin-Like Protein
Length = 107
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Query: 34 QYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDL 93
Q E S RL V+ +T CGPC I P + Y F+++DV + A +
Sbjct: 13 QPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQC-QGTAATNN 71
Query: 94 IDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEK 126
I PTF + ID+ GA L+ K ++
Sbjct: 72 ISATPTFQFFRNKVRIDQYQGADAVGLEEKIKQ 104
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 34 QYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFD 92
Q +++ S+ +V+ + A WCGP K I P +++ D ++ +KIDVD E A +
Sbjct: 9 QSFSAETSEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYG 68
Query: 93 LIDVLPTFVLVKRGKEIDRVVGAKKDE 119
++ + PT +++K G+ ++ VG K E
Sbjct: 69 VMSI-PTLLVLKDGEVVETSVGFKPKE 94
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLP 98
++D +++ + A WCGPCK I P + D A Y + K+++D P A + I +P
Sbjct: 18 KADGAILVDFWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIP 76
Query: 99 TFVLVKRGKEIDRVVGA 115
T +L K G+ VGA
Sbjct: 77 TLLLFKNGEVAATKVGA 93
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLP 98
++D +++ + A WCGPCK I P +++ A Y + K+++D P A + I +P
Sbjct: 18 KADGAILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIP 76
Query: 99 TFVLVKRGKEIDRVVGA 115
T +L K G+ VGA
Sbjct: 77 TLLLFKNGEVAATKVGA 93
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFI-KIDVDWLPEAAKAFDLIDVLPT 99
D+ ++ + A WCGPCK + P +++ + Y +I K++VD PE A+ F I +PT
Sbjct: 50 GDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFG-IQSIPT 108
Query: 100 FVLVKRGKEIDRVVGA 115
V E +GA
Sbjct: 109 IWFVPMKGEPQVNMGA 124
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLP 98
++D +++ + A WCGPCK I P + + A Y + K+++D P A + I +P
Sbjct: 18 KADGAILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNIDQNPGTAPKYG-IRGIP 76
Query: 99 TFVLVKRGKEIDRVVGA 115
T +L K G+ VGA
Sbjct: 77 TLLLFKNGEVAATKVGA 93
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLP 98
++D +++ + A WCGPCK I P + + A Y + K+++D P A + I +P
Sbjct: 18 KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRSIP 76
Query: 99 TFVLVKRGKEIDRVVGA 115
T +L K G+ VGA
Sbjct: 77 TLLLFKNGEVAATKVGA 93
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLP 98
++D +++ + A WCGPCK I P + + A Y + K+++D P A + I +P
Sbjct: 18 KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIP 76
Query: 99 TFVLVKRGKEIDRVVGA 115
T +L K G+ VGA
Sbjct: 77 TLLLFKNGEVAATKVGA 93
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLP 98
++D +++ + A WCGPCK I P + + A Y + K+++D P A + I +P
Sbjct: 18 KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIP 76
Query: 99 TFVLVKRGKEIDRVVGA 115
T +L K G+ VGA
Sbjct: 77 TLLLFKNGEVAATKVGA 93
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLP 98
++D +++ + A WCGPCK I P + + A Y + K+++D P A + I +P
Sbjct: 18 KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIP 76
Query: 99 TFVLVKRGKEIDRVVGA 115
T +L K G+ VGA
Sbjct: 77 TLLLFKNGEVAATKVGA 93
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLP 98
++D +++ + A WCGPCK I P + + A Y + K+++D P A + I +P
Sbjct: 18 KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIP 76
Query: 99 TFVLVKRGKEIDRVVGA 115
T +L K G+ VGA
Sbjct: 77 TLLLFKNGEVAATKVGA 93
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLP 98
++D +++ + A WCGPCK I P + + A Y + K+++D P A + I +P
Sbjct: 28 KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIP 86
Query: 99 TFVLVKRGKEIDRVVGA 115
T +L K G+ VGA
Sbjct: 87 TLLLFKNGEVAATKVGA 103
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFI-KIDVDWLPEAAKAFDLIDVLPT 99
D+ ++ + A WCGPCK + P +++ + Y +I K++VD PE A+ F I +PT
Sbjct: 50 GDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFG-IQGIPT 108
Query: 100 FVLVKRGKEIDRVVGA 115
V E +GA
Sbjct: 109 IWFVPMKGEPQVNMGA 124
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLP 98
++D +++ + A WCGPCK I P + + A Y + K+++D P A + I +P
Sbjct: 18 KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIP 76
Query: 99 TFVLVKRGKEIDRVVGA 115
T +L K G+ VGA
Sbjct: 77 TLLLFKNGEVAATKVGA 93
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLP 98
+S+ V++ + A WCGP K I P + + A Y+ + K++ D P A ++ I +P
Sbjct: 16 ESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYN-IRSIP 74
Query: 99 TFVLVKRGKEIDRVVGA 115
T + K G+ + ++GA
Sbjct: 75 TVLFFKNGERKESIIGA 91
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLP 98
++D +++ + A WCGPCK I P + + A Y + K+++D P A + I +P
Sbjct: 18 KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIP 76
Query: 99 TFVLVKRGKEIDRVVGA 115
T +L K G+ VGA
Sbjct: 77 TLLLFKNGEVAATKVGA 93
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLP 98
++D +++ + A WCGPCK I P + + A Y + K+++D P A + I +P
Sbjct: 18 KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIP 76
Query: 99 TFVLVKRGKEIDRVVGA 115
T +L K G+ VGA
Sbjct: 77 TLLLFKNGEVAATKVGA 93
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLP 98
++D +++ + A WCGPCK I P + + A Y + K+++D P A + I +P
Sbjct: 18 KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIP 76
Query: 99 TFVLVKRGKEIDRVVGA 115
T +L K G+ VGA
Sbjct: 77 TLLLFKNGEVAATKVGA 93
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLP 98
++D +++ + A WCGPCK I P + + A Y + K+++D P A + I +P
Sbjct: 18 KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIP 76
Query: 99 TFVLVKRGKEIDRVVGA 115
T +L K G+ VGA
Sbjct: 77 TLLLFKNGEVAATKVGA 93
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLP 98
++D +++ + A WCGPCK I P + + A Y + K+++D P A + I +P
Sbjct: 18 KADGAILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQNPGTAPKYG-IRGIP 76
Query: 99 TFVLVKRGKEIDRVVGA 115
T +L K G+ VGA
Sbjct: 77 TLLLFKNGEVAATKVGA 93
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLP 98
++D +++ + A WCGPCK I P + + A Y + K+++D P A + I +P
Sbjct: 18 KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIP 76
Query: 99 TFVLVKRGKEIDRVVGA 115
T +L K G VGA
Sbjct: 77 TLLLFKNGDVAATKVGA 93
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLP 98
++D +++ + A WCGPCK I P + + A Y + K+++D P A + I P
Sbjct: 19 KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGTP 77
Query: 99 TFVLVKRGKEIDRVVGA 115
T +L K G+ VGA
Sbjct: 78 TLLLFKNGEVAATKVGA 94
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLP 98
++D +++ + A WCGPCK I P + + A Y + K+++D P A + I +P
Sbjct: 18 KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIP 76
Query: 99 TFVLVKRGKEIDRVVGA 115
T +L K G+ VGA
Sbjct: 77 TLLLFKNGEVAACKVGA 93
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLP 98
++D +++ + A WCGPC+ I P + + A Y + K+++D P A + I +P
Sbjct: 18 KADGAILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIP 76
Query: 99 TFVLVKRGKEIDRVVGA 115
T +L K G+ VGA
Sbjct: 77 TLLLFKNGEVAATKVGA 93
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLP 98
++D +++ + A WCGPCK I P + + A Y + K+++D P A + + +P
Sbjct: 18 KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKY-IERGIP 76
Query: 99 TFVLVKRGKEIDRVVGA 115
T +L K G+ VGA
Sbjct: 77 TLLLFKNGEVAATKVGA 93
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLP 98
++++LV++ A WC PC EP K A Y F +++VD + A + ++++ P
Sbjct: 19 RNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKYSVLNI-P 77
Query: 99 TFVLVKRGKEIDRVVGA-KKDELQMKTEK 126
T ++ G+ +D +VGA +D L+ K
Sbjct: 78 TTLIFVNGQLVDSLVGAVDEDTLESTVNK 106
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLP 98
++D +++ + A WCGPCK I + + A Y + K+++D P A + I +P
Sbjct: 18 KADGAILVDFWAEWCGPCKLIASILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIP 76
Query: 99 TFVLVKRGKEIDRVVGA 115
T +L K G+ VGA
Sbjct: 77 TLLLFKNGEVAATKVGA 93
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLP 98
++D +++ + A WCGP K I P + + A Y + K+++D P A + I +P
Sbjct: 38 KADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIP 96
Query: 99 TFVLVKRGKEIDRVVGA 115
T +L K G+ VGA
Sbjct: 97 TLLLFKNGEVAATKVGA 113
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLP 98
++D +++ + A WCG CK I P + + A Y + K+++D P A + I +P
Sbjct: 18 KADGAILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIP 76
Query: 99 TFVLVKRGKEIDRVVGA 115
T +L K G+ VGA
Sbjct: 77 TLLLFKNGEVAATKVGA 93
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLP 98
++D +++ + A WCGP K I P + + A Y + K+++D P A + I +P
Sbjct: 18 KADGAILVDFWAEWCGPSKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIP 76
Query: 99 TFVLVKRGKEIDRVVGA 115
T +L K G+ VGA
Sbjct: 77 TLLLFKNGEVAATKVGA 93
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFI--KIDVDWLPEAAKAFDLIDVL 97
+ D+ ++ + A WCGPCK + P + + A Y D Q + K+D + E A AF + +
Sbjct: 36 EGDKPAIVDFYADWCGPCKMVAPILDELAKEY-DGQIVIYKVDTEKEQELAGAFGIRSIP 94
Query: 98 PTFVLVKRGK 107
+ GK
Sbjct: 95 SILFIPMEGK 104
>pdb|3CXG|A Chain A, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
pdb|3CXG|B Chain B, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
Length = 133
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 21 LVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKID 80
+ +EL++ + +++ S +VI + A WC PC I+ Y K+ Y V + ID
Sbjct: 21 IYIELKNTGSLNQVFSSTQNSS--IVIKFGAVWCKPCNKIKEYFKN-QLNYYYVTLVDID 77
Query: 81 VDWLPEAAKAFDLIDVLPTF 100
VD P+ + I LPTF
Sbjct: 78 VDIHPKLNDQHN-IKALPTF 96
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 45 VVIYYTAAWCGPCKFIEPYVKDFAA-MYTDVQFIKIDVDWLPEAAKAFDLIDV--LPTFV 101
++I +T +WC PCK ++P ++ A+ M D++F +D + +A K +++ LP+
Sbjct: 20 IIIMFTGSWCQPCKKMKPTFEEMASQMEGDIRFAYMDAE---DAEKTMAELNIRTLPSLA 76
Query: 102 LVKRG 106
L G
Sbjct: 77 LFVDG 81
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 14/108 (12%)
Query: 31 WRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMY-TDVQFIKIDVDWLPEAAK 89
W Q E SK+ +VV +Y+ A C CK EPY +++A Y + F +I++ P A+
Sbjct: 16 WSQQVEDSKKP--VVVXFYSPA-CPYCKAXEPYFEEYAKEYGSSAVFGRINIATNPWTAE 72
Query: 90 AFDLIDVLPTFVLVKRGKEIDRVVG---------AKKDELQMKTEKRR 128
+ + PTF G+ + VG A +D LQ E R
Sbjct: 73 KYG-VQGTPTFKFFCHGRPVWEQVGQIYPSILKNAVRDXLQHGEECIR 119
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLP 98
++D +++ + A WC CK I P + + A Y + K+++D P A + I +P
Sbjct: 18 KADGAILVDFWAEWCVWCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIP 76
Query: 99 TFVLVKRGKEIDRVVGA 115
T +L K G+ VGA
Sbjct: 77 TLLLFKNGEVAATKVGA 93
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 46 VIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 103
+I + A WC C+ ++P + FA D V K+DV P + F +I+ LPT
Sbjct: 26 MIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRF-IINALPTIYHC 84
Query: 104 KRGKEIDRVVG--AKKDELQMKTEK 126
K G E R G KKD + ++K
Sbjct: 85 KDG-EFRRYQGPRTKKDFINFISDK 108
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 45 VVIYYTAAWCGPCKFIEPYVKDFAAMY----TDVQFIKIDVDWLPEAAKAFDLIDVLPTF 100
V++ Y A WCG CK + P ++ A Y +DV K+D E +I+ PT
Sbjct: 379 VLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLD---HTENDVRGVVIEGYPTI 435
Query: 101 VLVKRGKEIDRVV 113
VL GK+ + VV
Sbjct: 436 VLYPGGKKSESVV 448
Score = 29.6 bits (65), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEP-YVK 65
QS LV+ + A WCG CK + P YVK
Sbjct: 29 QSHDLVLAEFFAPWCGHCKNMAPEYVK 55
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 16/91 (17%)
Query: 40 QSDRLVVIYYTAAWC--------------GPCKFIEPYVKDFAAMYTD-VQFIKIDVDWL 84
++D +++ + A WC GPCK I P + + A Y + K+++D
Sbjct: 19 KADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 78
Query: 85 PEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA 115
P A + I +PT +L K G+ VGA
Sbjct: 79 PGTAPKYG-IRGIPTLLLFKNGEVAATKVGA 108
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 44 LVVIYYTAAWCGPCKFIEP----YVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPT 99
++++ + A WCG CK + P K+ + + K+D + AK FD + PT
Sbjct: 26 IILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQTDLAKRFD-VSGYPT 84
Query: 100 FVLVKRGKEID 110
+ ++G+ D
Sbjct: 85 LKIFRKGRPFD 95
>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
pdb|3UL3|A Chain A, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
Length = 128
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 42 DRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTF 100
+ ++V+Y+ A WC C + Y + +K+D+D A+ F + LPT
Sbjct: 42 NTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFS-VKSLPTI 100
Query: 101 VLVKRGKEIDRVVGAKKDEL 120
+L+K ++ + A+KD
Sbjct: 101 ILLK-----NKTMLARKDHF 115
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 45 VVIYYTAAWCGPCKFIEPYVKDFAAMYTD----VQFIKIDVDWLPEAAKAFDLIDVLPTF 100
V++ + A WCG CK P + A+ D + KID A FD + PT
Sbjct: 37 VLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFD-VSGYPTI 95
Query: 101 VLVKRGKEIDRVVGAKKDELQMK 123
++K+G+ +D ++E+ K
Sbjct: 96 KILKKGQAVDYDGSRTQEEIVAK 118
>pdb|2KUC|A Chain A, Solution Structure Of A Putative Disulphide-Isomerase From
Bacteroides Thetaiotaomicron
Length = 130
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 42 DRLVVIYYTAAWCGPCKFIEPYV-KD-FAAMYTDVQFIKIDVDWLPEAAKAFDL-----I 94
D+L+ + WCGPCK + V KD A Y + F+ + +D E + +L +
Sbjct: 27 DKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDM--EKGEGVELRKKYGV 84
Query: 95 DVLPTFVLVK-RGKEIDRVVGAK 116
PT + + G+ + R+VGA+
Sbjct: 85 HAYPTLLFINSSGEVVYRLVGAE 107
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 45 VVIYYTAAWCGPCKFIEPYVKDFAAMYTD----VQFIKIDVDWLPEAAKAFDLIDVLPTF 100
V++ + A WCG CK P + A + D + KID A FD + PT
Sbjct: 35 VLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFD-VSGYPTI 93
Query: 101 VLVKRGKEIDRVVGAKKDELQMK 123
++K+G+ +D ++E+ K
Sbjct: 94 KILKKGQAVDYEGSRTQEEIVAK 116
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 44 LVVIYYTAAWCGPCKFIEP----YVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPT 99
++++ + A WCG CK + P K+ + + K+D + AK FD + PT
Sbjct: 149 IILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFD-VSGYPT 207
Query: 100 FVLVKRGKEID 110
+ ++G+ D
Sbjct: 208 LKIFRKGRPYD 218
>pdb|3S9F|A Chain A, The Structure Of Tryparedoxin I From Leishmania Major
Length = 165
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKI 79
S + V Y++A+WC PC+ P + +F + D + +I
Sbjct: 47 SGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEI 85
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic
Fungal Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic
Fungal Protein Disulfide Isomerase
Length = 121
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 45 VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQF------IKID--VDWLPEAAKAFDLIDV 96
V+I + A WCG CK + P ++ A+Y +F K+D + +P+ + F I +
Sbjct: 28 VLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFPTIKL 87
Query: 97 LP 98
P
Sbjct: 88 YP 89
>pdb|1OKD|A Chain A, Nmr-Structure Of Tryparedoxin 1
Length = 154
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 33 SQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDF 67
+ E + +LV Y++A+WC PC+ P + +F
Sbjct: 19 GEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEF 53
>pdb|1EZK|A Chain A, Crystal Structure Of Recombinant Tryparedoxin I
Length = 153
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 33 SQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDF 67
+ E + +LV Y++A+WC PC+ P + +F
Sbjct: 18 GEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEF 52
>pdb|1QK8|A Chain A, Tryparedoxin-I From Crithidia Fasciculata
pdb|1O7U|A Chain A, Radiation Induced Tryparedoxin-I
pdb|1O85|A Chain A, Radiation-Reduced Tryparedoxin-I
pdb|1O8W|A Chain A, Radiation-Reduced Tryparedoxin-I
Length = 146
Score = 33.1 bits (74), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 33 SQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDF 67
+ E + +LV Y++A+WC PC+ P + +F
Sbjct: 19 GEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEF 53
>pdb|1EWX|A Chain A, Crystal Structure Of Native Tryparedoxin I From
Crithidia Fasciculata
Length = 146
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 33 SQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDF 67
+ E + +LV Y++A+WC PC+ P + +F
Sbjct: 19 GEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEF 53
>pdb|1OC9|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 32.7 bits (73), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 14/103 (13%)
Query: 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAF-DLIDVLPT 99
+ + V Y++A+WC PC+ P + DF + + + ++ + E+A+ F D +P
Sbjct: 30 AGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAESKNFEVMLISWDESAEDFKDYYAKMPW 89
Query: 100 FVLV---KRG----------KEIDRVVGAKKDELQMKTEKRRN 129
L ++G K I +VG + D + T + R
Sbjct: 90 LALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQART 132
>pdb|1O81|A Chain A, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1O81|B Chain B, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1OC9|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 32.3 bits (72), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 14/103 (13%)
Query: 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAF-DLIDVLPT 99
+ + V Y++A+WC PC+ P + DF + + + ++ + E+A+ F D +P
Sbjct: 30 AGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPW 89
Query: 100 FVLV---KRG----------KEIDRVVGAKKDELQMKTEKRRN 129
L ++G K I +VG + D + T + R
Sbjct: 90 LALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQART 132
>pdb|1O6J|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur
Phasing
pdb|1O6J|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur
Phasing
Length = 150
Score = 32.0 bits (71), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 41 SDRLVVIYYTAAWCGPCKFIEPYVKDF 67
+ + V Y++A+WC PC+ P + DF
Sbjct: 28 AGKTVFFYFSASWCPPCRAFTPQLIDF 54
>pdb|1FG4|A Chain A, Structure Of Tryparedoxin Ii
pdb|1FG4|B Chain B, Structure Of Tryparedoxin Ii
Length = 149
Score = 32.0 bits (71), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 41 SDRLVVIYYTAAWCGPCKFIEPYVKDF 67
+ + V Y++A+WC PC+ P + DF
Sbjct: 27 AGKTVFFYFSASWCPPCRAFTPQLIDF 53
>pdb|2L6C|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Oxidized
Form
pdb|2L6D|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Reduced Form
Length = 110
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 46 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKR 105
++++ C CK +E + F A V +D + PE K + +PT V ++
Sbjct: 23 IVFFHKNLCPHCKNMEKVLDKFGARAPQVAISSVDSEARPELMKELGF-ERVPTLVFIRD 81
Query: 106 GK 107
GK
Sbjct: 82 GK 83
>pdb|1O73|A Chain A, Tryparedoxin From Trypanosoma Brucei
Length = 144
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 43 RLVVIYYTAAWCGPCKFIEPYVKDF 67
+ V +Y++A+WC PC+ P + +F
Sbjct: 29 KTVFLYFSASWCPPCRGFTPVLAEF 53
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 51 AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVD 82
A WCGPC+ P +K+ Y D+ F+ + D
Sbjct: 39 ATWCGPCRGELPALKELEEKYAGKDIHFVSLSCD 72
>pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide
Isomerase From Bacteroides Thetaiotaomicron
Length = 159
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 34 QYEASKQSDRLVVIYYTAAWCGPCKFIEPYV-KDFAAMY---TDVQFIKIDVDWLPEAAK 89
Q S ++V++ +TA+WCG C+ P++ KD + D I ID D E
Sbjct: 25 QVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVL 84
Query: 90 AF 91
AF
Sbjct: 85 AF 86
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain
Of Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDV 74
QSD L ++ + A WCG C+ + P K A DV
Sbjct: 33 QSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDV 67
>pdb|2LUS|A Chain A, Nmr Structure Of Carcinoscorpius Rotundicauda
Thioredoxin Related Protein 16 And Its Role In
Regulating Transcription Factor Nf-Kb Activity
Length = 143
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 36 EASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDV 74
EA K D ++ Y++A WC PC+ P + D MY+++
Sbjct: 21 EALKDKD-IIGFYFSAHWCPPCRGFTPILAD---MYSEL 55
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 36 EASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFA 68
E ++ V+I + A WCG CK +EP K+
Sbjct: 364 EIVNNENKDVLIEFYAPWCGHCKNLEPKYKELG 396
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain
Of Human Protein Disulfide-Isomerase A3
Length = 142
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 36 EASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFA 68
E ++ V+I + A WCG CK +EP K+
Sbjct: 39 EIVNNENKDVLIEFYAPWCGHCKNLEPKYKELG 71
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 38 SKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMY--TDVQFIKIDVD 82
S ++ +V + + A+WCGPC+ P+ A Y Q + +++D
Sbjct: 24 SDKTGSVVYLDFWASWCGPCRQSFPWXNQXQAKYKAKGFQVVAVNLD 70
>pdb|1O8X|A Chain A, Mutant Tryparedoxin-I Cys43ala
Length = 146
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 33 SQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDF 67
+ E + +LV Y++A+WC P + P + +F
Sbjct: 19 GEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEF 53
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain
Of Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 45 VVIYYTAAWCGPCKFIEPYVKDFAAMY 71
V+I + A WCG CK +EP Y
Sbjct: 28 VLIEFYAPWCGHCKQLEPIYTSLGKKY 54
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 41 SDRLVVIYYTAAWCGPCKFIEPY-----VKDFAAMYTDVQFIKIDVDWLPEAAKAFDLID 95
++ + I + A WCG CK + P K+F + V+ ++D + +
Sbjct: 22 AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGL-AGVKIAEVDCTAERNICSKYS-VR 79
Query: 96 VLPTFVLVKRGKEIDRVVGAK 116
PT +L + GK++ G +
Sbjct: 80 GYPTLLLFRGGKKVSEHSGGR 100
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 41 SDRLVVIYYTAAWCGPCKFIEPY-----VKDFAAMYTDVQFIKIDVDWLPEAAKAFDLID 95
++ + I + A WCG CK + P K+F + V+ ++D + +
Sbjct: 20 AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGL-AGVKIAEVDCTAERNICSKYS-VR 77
Query: 96 VLPTFVLVKRGKEIDRVVGAK 116
PT +L + GK++ G +
Sbjct: 78 GYPTLLLFRGGKKVSEHSGGR 98
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 32 RSQYEASKQSDRLVVIYYTAAWCGPCKFIEP-YVK---DFAAMYTDVQFIKIDVDWLPEA 87
+S + + + + +++ + A WCG CK + P Y K A ++++ K+D +
Sbjct: 14 KSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDL 73
Query: 88 AKAFDLIDVLPTFVLVKRG 106
A+ + + PT + G
Sbjct: 74 AQQYG-VRGYPTIKFFRNG 91
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 41 SDRLVVIYYTAAWCGPCKFIEPY-----VKDFAAMYTDVQFIKIDVDWLPEAAKAFDLID 95
++ + I + A WCG CK + P K+F + V+ ++D + +
Sbjct: 15 AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGL-AGVKIAEVDCTAERNICSKYS-VR 72
Query: 96 VLPTFVLVKRGKEIDRVVGAK 116
PT +L + GK++ G +
Sbjct: 73 GYPTLLLFRGGKKVSEHSGGR 93
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 46 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAK 89
V+ + A WCGPC+ P + A M V+ K+D P+ +
Sbjct: 25 VVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQ 69
>pdb|1I5G|A Chain A, Tryparedoxin Ii Complexed With Glutathionylspermidine
Length = 144
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 41 SDRLVVIYYTAAWCGPCKFIEPYVKDF 67
+ + V Y++A+WC P + P + DF
Sbjct: 27 AGKTVFFYFSASWCPPSRAFTPQLIDF 53
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 45 VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKI 79
V + + A WCG CK + P Y D + I I
Sbjct: 270 VFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVI 304
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQ 75
S+ + ++ + A WCG CK +EP ++AA ++V+
Sbjct: 24 SEDVWMVEFYAPWCGHCKNLEP---EWAAAASEVK 55
>pdb|3A60|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form I)
pdb|3A60|B Chain B, Crystal Structure Of Unphosphorylated P70s6k1 (Form I)
pdb|3A61|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form Ii)
Length = 327
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 50 TAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEI 109
T +CG +++ P + + V DW A +D++ P F R K I
Sbjct: 178 THTFCGTIEYMAPEILMRSGHNRAV-------DWWSLGALMYDMLTGAPPFTGENRKKTI 230
Query: 110 DRVVGAK 116
D+++ K
Sbjct: 231 DKILKCK 237
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 45 VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKI 79
V + + A WCG CK + P Y D + I I
Sbjct: 28 VFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVI 62
>pdb|2K8V|A Chain A, Solution Structure Of Oxidised Erp18
Length = 157
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 30 QWRS----QYEASKQSDRLVVIYYTAAWCGPCKFIEP 62
WR+ + EA+ L+VI + + WCG CK ++P
Sbjct: 24 HWRTLEDGKKEAAASGLPLMVIIHKS-WCGACKALKP 59
>pdb|3A62|A Chain A, Crystal Structure Of Phosphorylated P70s6k1
Length = 327
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 50 TAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEI 109
T +CG +++ P + + V DW A +D++ P F R K I
Sbjct: 178 THXFCGTIEYMAPEILMRSGHNRAV-------DWWSLGALMYDMLTGAPPFTGENRKKTI 230
Query: 110 DRVVGAK 116
D+++ K
Sbjct: 231 DKILKCK 237
>pdb|1SEN|A Chain A, Endoplasmic Reticulum Protein Rp19 O95881
Length = 164
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 30 QWRS----QYEASKQSDRLVVIYYTAAWCGPCKFIEP 62
WR+ + EA+ L+VI + + WCG CK ++P
Sbjct: 31 HWRTLEDGKKEAAASGLPLMVIIHKS-WCGACKALKP 66
>pdb|3IS3|A Chain A, Crystal Structure Of 17beta-Hydroxysteroid Dehydrogenase
(Apo Form) From Fungus Cochliobolus Lunatus
pdb|3QWF|A Chain A, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus
pdb|3QWF|B Chain B, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus
pdb|3QWF|C Chain C, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus
pdb|3QWF|D Chain D, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus
pdb|3QWF|E Chain E, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus
pdb|3QWF|F Chain F, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus
pdb|3QWF|G Chain G, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus
pdb|3QWF|H Chain H, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus
pdb|3QWI|A Chain A, Crystal Structure Of A 17beta-Hydroxysteroid
Dehydrogenase (Holo Form) From Fungus Cochliobolus
Lunatus In Complex With Nadph And Coumestrol
pdb|3QWI|B Chain B, Crystal Structure Of A 17beta-Hydroxysteroid
Dehydrogenase (Holo Form) From Fungus Cochliobolus
Lunatus In Complex With Nadph And Coumestrol
pdb|3QWI|C Chain C, Crystal Structure Of A 17beta-Hydroxysteroid
Dehydrogenase (Holo Form) From Fungus Cochliobolus
Lunatus In Complex With Nadph And Coumestrol
pdb|3QWI|D Chain D, Crystal Structure Of A 17beta-Hydroxysteroid
Dehydrogenase (Holo Form) From Fungus Cochliobolus
Lunatus In Complex With Nadph And Coumestrol
pdb|3QWH|A Chain A, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus In Complex With
Nadph And Kaempferol
pdb|3QWH|B Chain B, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus In Complex With
Nadph And Kaempferol
pdb|3QWH|C Chain C, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus In Complex With
Nadph And Kaempferol
pdb|3QWH|D Chain D, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus In Complex With
Nadph And Kaempferol
Length = 270
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 53 WCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFD 92
+ K E V + A+ +D IK D+ +PE K FD
Sbjct: 49 YANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFD 88
>pdb|3ITD|A Chain A, Crystal Structure Of An Inactive 17beta-Hydroxysteroid
Dehydrogenase (Y167f Mutated Form) From Fungus
Cochliobolus Lunatus
Length = 270
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 53 WCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFD 92
+ K E V + A+ +D IK D+ +PE K FD
Sbjct: 49 YANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFD 88
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 41 SDRLVVIYYTAAWCGPCKFIEP-YVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPT 99
S L+++ + A WCG CK + P Y + V K+D + + PT
Sbjct: 20 SAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYG-VSGYPT 78
Query: 100 FVLVKRGKE 108
+ + G+E
Sbjct: 79 LKIFRDGEE 87
>pdb|3EMX|A Chain A, Crystal Structure Of Thioredoxin From Aeropyrum Pernix
pdb|3EMX|B Chain B, Crystal Structure Of Thioredoxin From Aeropyrum Pernix
Length = 135
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 94 IDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRRN 129
++ PT V K G+ +D++VGA +K EK R
Sbjct: 90 VEGTPTLVFYKEGRIVDKLVGATP--WSLKVEKARE 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,725,582
Number of Sequences: 62578
Number of extensions: 132178
Number of successful extensions: 522
Number of sequences better than 100.0: 164
Number of HSP's better than 100.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 297
Number of HSP's gapped (non-prelim): 167
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)