Query 032982
Match_columns 129
No_of_seqs 103 out of 1875
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 08:20:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032982.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032982hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0910 Thioredoxin-like prote 100.0 2.8E-28 6.1E-33 152.9 12.7 106 20-129 42-149 (150)
2 KOG0907 Thioredoxin [Posttrans 99.9 2.5E-25 5.3E-30 134.5 13.1 102 25-127 4-105 (106)
3 cd02985 TRX_CDSP32 TRX family, 99.9 5.8E-25 1.3E-29 133.0 14.0 97 27-126 2-101 (103)
4 cd02954 DIM1 Dim1 family; Dim1 99.9 1.5E-25 3.3E-30 136.5 9.2 84 29-115 3-87 (114)
5 PF00085 Thioredoxin: Thioredo 99.9 4.9E-24 1.1E-28 128.2 15.0 99 24-127 3-103 (103)
6 PHA02278 thioredoxin-like prot 99.9 4.2E-24 9.1E-29 128.9 12.8 92 27-123 3-100 (103)
7 COG3118 Thioredoxin domain-con 99.9 1.4E-24 3.1E-29 149.2 11.6 109 17-128 20-130 (304)
8 cd02948 TRX_NDPK TRX domain, T 99.9 8.5E-24 1.8E-28 127.7 13.6 98 24-127 3-102 (102)
9 cd03006 PDI_a_EFP1_N PDIa fami 99.9 9.5E-24 2.1E-28 129.3 12.7 105 16-123 5-112 (113)
10 PLN00410 U5 snRNP protein, DIM 99.9 1.4E-23 3.1E-28 132.3 12.9 104 22-128 5-120 (142)
11 PRK09381 trxA thioredoxin; Pro 99.9 3.4E-23 7.5E-28 126.2 14.3 105 20-129 3-109 (109)
12 cd02956 ybbN ybbN protein fami 99.9 1.7E-23 3.7E-28 124.8 12.1 93 30-125 2-96 (96)
13 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 2E-23 4.4E-28 126.2 11.5 99 21-124 2-104 (104)
14 cd02963 TRX_DnaJ TRX domain, D 99.9 2.5E-23 5.5E-28 127.4 11.8 99 27-127 10-111 (111)
15 cd02999 PDI_a_ERp44_like PDIa 99.9 2.2E-23 4.9E-28 125.4 11.2 83 40-124 16-100 (100)
16 cd02989 Phd_like_TxnDC9 Phosdu 99.9 5.4E-23 1.2E-27 126.2 12.8 92 19-115 3-94 (113)
17 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 2.7E-23 5.8E-28 125.1 11.1 97 21-123 2-100 (101)
18 PRK10996 thioredoxin 2; Provis 99.9 7.2E-23 1.6E-27 129.9 13.6 101 22-128 37-139 (139)
19 cd03065 PDI_b_Calsequestrin_N 99.9 5.7E-23 1.2E-27 126.8 12.5 104 19-128 8-119 (120)
20 PTZ00051 thioredoxin; Provisio 99.9 2.2E-22 4.7E-27 120.4 12.7 96 22-122 2-97 (98)
21 cd02957 Phd_like Phosducin (Ph 99.9 2.7E-22 5.9E-27 123.1 13.4 93 19-115 3-95 (113)
22 cd02984 TRX_PICOT TRX domain, 99.9 3.9E-22 8.5E-27 119.0 12.6 94 28-124 2-96 (97)
23 cd02950 TxlA TRX-like protein 99.9 2.2E-22 4.8E-27 128.0 11.3 93 35-128 13-110 (142)
24 cd02994 PDI_a_TMX PDIa family, 99.9 6.6E-22 1.4E-26 119.0 12.6 97 21-126 2-101 (101)
25 cd02986 DLP Dim1 family, Dim1- 99.9 8.4E-22 1.8E-26 119.4 13.0 97 29-128 3-111 (114)
26 cd02975 PfPDO_like_N Pyrococcu 99.9 6.4E-22 1.4E-26 121.5 12.3 101 28-129 8-111 (113)
27 cd02965 HyaE HyaE family; HyaE 99.9 8.1E-22 1.8E-26 119.5 11.4 89 29-122 18-110 (111)
28 PTZ00443 Thioredoxin domain-co 99.9 1.4E-21 3E-26 132.3 13.8 108 19-128 29-139 (224)
29 cd02996 PDI_a_ERp44 PDIa famil 99.9 9.4E-22 2E-26 119.7 11.3 98 21-124 2-108 (108)
30 cd03002 PDI_a_MPD1_like PDI fa 99.9 9.7E-22 2.1E-26 119.6 11.4 99 22-125 2-109 (109)
31 cd02987 Phd_like_Phd Phosducin 99.9 2.5E-21 5.4E-26 127.0 14.0 107 17-126 59-173 (175)
32 TIGR01068 thioredoxin thioredo 99.9 3.1E-21 6.7E-26 115.5 12.9 96 29-128 4-101 (101)
33 cd02962 TMX2 TMX2 family; comp 99.9 3.6E-21 7.8E-26 123.3 13.7 93 19-115 27-127 (152)
34 cd03005 PDI_a_ERp46 PDIa famil 99.9 1.6E-21 3.5E-26 117.2 11.5 96 22-124 2-102 (102)
35 KOG0908 Thioredoxin-like prote 99.9 8.8E-22 1.9E-26 132.1 10.8 106 20-128 1-106 (288)
36 cd02949 TRX_NTR TRX domain, no 99.9 7.4E-21 1.6E-25 113.7 12.8 85 40-125 11-97 (97)
37 cd03001 PDI_a_P5 PDIa family, 99.9 7.6E-21 1.6E-25 114.5 12.2 98 22-124 2-102 (103)
38 cd02997 PDI_a_PDIR PDIa family 99.9 1.2E-20 2.5E-25 113.8 11.8 97 22-124 2-104 (104)
39 cd02953 DsbDgamma DsbD gamma f 99.9 2.5E-21 5.5E-26 117.1 8.6 90 35-125 4-104 (104)
40 TIGR01126 pdi_dom protein disu 99.9 1.2E-20 2.6E-25 113.2 11.3 88 40-128 11-102 (102)
41 cd03000 PDI_a_TMX3 PDIa family 99.9 2E-20 4.3E-25 113.2 11.1 85 41-127 14-103 (104)
42 cd02951 SoxW SoxW family; SoxW 99.8 4.4E-20 9.5E-25 115.1 11.4 94 34-128 5-119 (125)
43 cd02988 Phd_like_VIAF Phosduci 99.8 1.6E-19 3.5E-24 119.9 13.3 104 17-126 79-190 (192)
44 TIGR01295 PedC_BrcD bacterioci 99.8 2E-19 4.4E-24 111.7 12.5 97 22-125 8-121 (122)
45 cd02993 PDI_a_APS_reductase PD 99.8 1.5E-19 3.2E-24 110.3 11.0 100 22-124 3-109 (109)
46 PTZ00062 glutaredoxin; Provisi 99.8 1.6E-19 3.6E-24 120.5 12.1 91 26-128 4-94 (204)
47 cd02998 PDI_a_ERp38 PDIa famil 99.8 1.1E-19 2.5E-24 109.5 10.3 98 22-124 2-105 (105)
48 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 1.4E-19 3E-24 109.0 10.6 97 22-124 2-104 (104)
49 cd02947 TRX_family TRX family; 99.8 4.1E-19 8.9E-24 104.0 12.1 86 39-125 7-93 (93)
50 cd02961 PDI_a_family Protein D 99.8 3.7E-19 7.9E-24 106.0 9.9 85 39-124 12-101 (101)
51 PRK00293 dipZ thiol:disulfide 99.8 3.4E-18 7.4E-23 129.6 12.9 110 19-129 451-571 (571)
52 cd02952 TRP14_like Human TRX-r 99.8 5.1E-18 1.1E-22 104.5 10.8 99 24-124 5-118 (119)
53 TIGR00411 redox_disulf_1 small 99.8 9.7E-18 2.1E-22 97.0 10.6 79 45-128 2-82 (82)
54 cd02992 PDI_a_QSOX PDIa family 99.8 3.3E-18 7.1E-23 105.1 8.3 82 21-107 2-89 (114)
55 TIGR02187 GlrX_arch Glutaredox 99.8 1.8E-17 4E-22 112.1 11.9 98 29-128 7-111 (215)
56 PLN02309 5'-adenylylsulfate re 99.8 2.5E-17 5.5E-22 121.2 13.0 107 18-127 343-456 (457)
57 PTZ00102 disulphide isomerase; 99.8 1.8E-17 3.9E-22 123.3 12.3 105 19-128 356-465 (477)
58 PTZ00102 disulphide isomerase; 99.8 2.5E-17 5.5E-22 122.6 12.8 102 20-128 32-138 (477)
59 TIGR00424 APS_reduc 5'-adenyly 99.8 3.2E-17 6.9E-22 120.8 13.0 107 18-127 349-462 (463)
60 TIGR01130 ER_PDI_fam protein d 99.7 3E-17 6.5E-22 121.4 12.5 101 22-128 3-109 (462)
61 cd02959 ERp19 Endoplasmic reti 99.7 3.8E-18 8.2E-23 105.3 6.3 95 30-125 7-110 (117)
62 KOG0190 Protein disulfide isom 99.7 1.4E-17 3.1E-22 122.4 10.1 104 19-128 24-132 (493)
63 PF13098 Thioredoxin_2: Thiore 99.7 4.5E-17 9.8E-22 99.5 7.8 84 40-124 3-112 (112)
64 PRK15412 thiol:disulfide inter 99.7 3.3E-16 7.1E-21 103.8 11.8 85 41-128 67-176 (185)
65 cd02982 PDI_b'_family Protein 99.7 1E-16 2.3E-21 96.4 8.4 87 42-128 12-103 (103)
66 TIGR02187 GlrX_arch Glutaredox 99.7 5.1E-16 1.1E-20 105.1 11.9 82 41-126 132-214 (215)
67 TIGR00385 dsbE periplasmic pro 99.7 9.3E-16 2E-20 100.6 11.4 87 40-129 61-172 (173)
68 TIGR02738 TrbB type-F conjugat 99.7 1.3E-15 2.7E-20 97.9 11.3 86 41-128 49-153 (153)
69 PRK14018 trifunctional thiored 99.7 1.1E-15 2.5E-20 114.0 12.2 85 41-126 55-171 (521)
70 cd03010 TlpA_like_DsbE TlpA-li 99.7 1E-15 2.2E-20 95.4 10.0 80 39-120 22-126 (127)
71 TIGR02740 TraF-like TraF-like 99.7 4.6E-15 9.9E-20 103.4 13.8 85 41-127 165-263 (271)
72 cd02955 SSP411 TRX domain, SSP 99.7 1.9E-15 4.2E-20 93.8 10.5 81 34-115 7-100 (124)
73 PHA02125 thioredoxin-like prot 99.7 2.2E-15 4.7E-20 86.0 9.9 70 46-124 2-73 (75)
74 cd03007 PDI_a_ERp29_N PDIa fam 99.6 2.1E-15 4.6E-20 92.3 9.2 98 22-127 3-115 (116)
75 cd03026 AhpF_NTD_C TRX-GRX-lik 99.6 5.3E-15 1.1E-19 87.0 10.5 76 41-121 11-87 (89)
76 KOG4277 Uncharacterized conser 99.6 6.9E-16 1.5E-20 106.9 7.4 96 30-127 32-131 (468)
77 cd02958 UAS UAS family; UAS is 99.6 1E-14 2.2E-19 89.5 11.2 99 29-128 4-111 (114)
78 TIGR01130 ER_PDI_fam protein d 99.6 5.6E-15 1.2E-19 109.3 11.3 103 19-128 345-454 (462)
79 PRK03147 thiol-disulfide oxido 99.6 1.4E-14 3E-19 94.7 11.8 86 41-127 60-171 (173)
80 TIGR00412 redox_disulf_2 small 99.6 1E-14 2.2E-19 83.4 9.5 70 47-124 3-75 (76)
81 cd03008 TryX_like_RdCVF Trypar 99.6 8E-15 1.7E-19 93.4 9.4 71 40-111 23-128 (146)
82 cd02973 TRX_GRX_like Thioredox 99.6 8.2E-15 1.8E-19 81.7 8.3 62 45-109 2-63 (67)
83 KOG0190 Protein disulfide isom 99.6 3.6E-15 7.8E-20 109.9 8.3 101 20-127 366-472 (493)
84 KOG0912 Thiol-disulfide isomer 99.6 7E-15 1.5E-19 101.7 8.4 89 40-129 11-107 (375)
85 PF13905 Thioredoxin_8: Thiore 99.6 1.7E-14 3.6E-19 85.6 8.6 66 42-108 1-95 (95)
86 cd03009 TryX_like_TryX_NRX Try 99.6 1.7E-14 3.8E-19 90.4 8.9 71 40-111 16-115 (131)
87 PLN02919 haloacid dehalogenase 99.6 2.6E-14 5.7E-19 114.8 11.9 87 41-128 419-536 (1057)
88 cd02964 TryX_like_family Trypa 99.6 1.4E-14 3.1E-19 91.0 8.3 72 39-111 14-115 (132)
89 PRK13728 conjugal transfer pro 99.6 7.1E-14 1.5E-18 91.6 11.3 81 46-128 73-171 (181)
90 PRK11509 hydrogenase-1 operon 99.6 1.2E-13 2.7E-18 86.1 11.8 88 41-129 33-125 (132)
91 PTZ00056 glutathione peroxidas 99.6 3.3E-14 7.2E-19 95.1 9.1 88 41-128 38-178 (199)
92 cd03011 TlpA_like_ScsD_MtbDsbE 99.6 6.7E-14 1.5E-18 86.6 9.9 81 41-123 19-121 (123)
93 cd02966 TlpA_like_family TlpA- 99.5 6.9E-14 1.5E-18 84.6 9.2 73 41-114 18-116 (116)
94 cd03012 TlpA_like_DipZ_like Tl 99.5 1.9E-13 4.1E-18 85.2 9.3 74 41-115 22-125 (126)
95 TIGR02661 MauD methylamine deh 99.5 2.8E-13 6.1E-18 90.0 10.0 86 40-127 72-178 (189)
96 cd02960 AGR Anterior Gradient 99.5 1.7E-13 3.7E-18 85.4 8.1 89 25-115 6-99 (130)
97 smart00594 UAS UAS domain. 99.5 6.2E-13 1.3E-17 82.6 10.3 95 29-124 14-121 (122)
98 cd02967 mauD Methylamine utili 99.5 4.3E-13 9.3E-18 82.0 9.1 70 41-111 20-111 (114)
99 KOG0191 Thioredoxin/protein di 99.5 2.8E-13 6E-18 98.8 9.6 89 39-128 44-134 (383)
100 PLN02399 phospholipid hydroper 99.5 5.4E-13 1.2E-17 91.1 10.1 90 40-129 97-235 (236)
101 PF02114 Phosducin: Phosducin; 99.5 5.4E-13 1.2E-17 92.6 9.9 107 17-126 122-236 (265)
102 TIGR01626 ytfJ_HI0045 conserve 99.5 1.1E-12 2.4E-17 86.4 10.4 82 39-123 56-175 (184)
103 COG4232 Thiol:disulfide interc 99.5 5E-13 1.1E-17 99.7 9.3 103 23-128 457-568 (569)
104 TIGR02540 gpx7 putative glutat 99.4 1.4E-12 3.1E-17 83.9 9.3 88 41-128 21-153 (153)
105 PF13899 Thioredoxin_7: Thiore 99.4 1.2E-12 2.6E-17 75.8 7.0 74 29-104 4-81 (82)
106 PLN02412 probable glutathione 99.4 3.6E-12 7.7E-17 83.2 9.1 88 41-129 28-165 (167)
107 cd00340 GSH_Peroxidase Glutath 99.4 2E-12 4.3E-17 83.1 7.5 82 41-123 21-151 (152)
108 PTZ00256 glutathione peroxidas 99.4 6.7E-12 1.5E-16 83.0 9.0 88 41-129 39-182 (183)
109 PF08534 Redoxin: Redoxin; In 99.4 2E-11 4.3E-16 77.7 10.5 75 41-115 27-134 (146)
110 COG2143 Thioredoxin-related pr 99.3 2.9E-11 6.3E-16 76.5 10.6 92 33-125 33-146 (182)
111 cd02969 PRX_like1 Peroxiredoxi 99.3 3E-11 6.5E-16 79.0 11.2 87 41-128 24-152 (171)
112 KOG1731 FAD-dependent sulfhydr 99.3 1.1E-12 2.3E-17 97.5 4.6 87 14-105 33-125 (606)
113 KOG0191 Thioredoxin/protein di 99.3 1.1E-11 2.3E-16 90.5 9.4 102 22-128 146-252 (383)
114 KOG0914 Thioredoxin-like prote 99.3 2.5E-12 5.4E-17 85.4 4.9 100 14-115 118-224 (265)
115 TIGR02196 GlrX_YruB Glutaredox 99.3 3.5E-11 7.5E-16 67.6 8.6 69 46-125 2-74 (74)
116 PF11009 DUF2847: Protein of u 99.3 2.6E-10 5.6E-15 68.4 11.4 97 22-120 1-104 (105)
117 PF06110 DUF953: Eukaryotic pr 99.3 5.7E-11 1.2E-15 73.0 8.7 97 25-125 2-118 (119)
118 cd03017 PRX_BCP Peroxiredoxin 99.3 7.1E-11 1.5E-15 74.5 9.3 83 41-124 22-139 (140)
119 COG0526 TrxA Thiol-disulfide i 99.3 6.8E-11 1.5E-15 71.2 8.4 82 42-124 32-120 (127)
120 PF13728 TraF: F plasmid trans 99.2 3.8E-10 8.3E-15 76.4 12.4 81 41-123 119-213 (215)
121 KOG3414 Component of the U4/U6 99.2 4.6E-10 1E-14 68.5 10.9 103 22-127 5-119 (142)
122 PF14595 Thioredoxin_9: Thiore 99.2 1E-10 2.3E-15 73.2 8.4 84 41-126 40-127 (129)
123 KOG1672 ATP binding protein [P 99.2 1.5E-10 3.2E-15 75.7 9.0 93 18-115 64-156 (211)
124 cd03014 PRX_Atyp2cys Peroxired 99.2 3.9E-10 8.4E-15 71.6 9.7 83 41-124 25-141 (143)
125 PRK00522 tpx lipid hydroperoxi 99.1 8.2E-10 1.8E-14 72.1 10.1 73 41-114 43-149 (167)
126 PF13192 Thioredoxin_3: Thiore 99.1 1.3E-09 2.7E-14 62.2 9.4 71 48-125 4-76 (76)
127 TIGR02200 GlrX_actino Glutared 99.1 8.6E-10 1.9E-14 62.6 8.4 70 46-125 2-76 (77)
128 PRK09437 bcp thioredoxin-depen 99.1 3.4E-09 7.4E-14 68.0 12.2 84 41-125 29-150 (154)
129 TIGR02739 TraF type-F conjugat 99.1 3.1E-09 6.6E-14 73.4 12.5 85 41-127 149-247 (256)
130 PF03190 Thioredox_DsbH: Prote 99.1 6.4E-10 1.4E-14 71.7 8.4 92 34-126 29-139 (163)
131 cd01659 TRX_superfamily Thiore 99.1 1E-09 2.3E-14 59.0 7.4 60 46-106 1-63 (69)
132 cd02991 UAS_ETEA UAS family, E 99.1 6.9E-09 1.5E-13 63.8 11.3 96 30-128 5-113 (116)
133 KOG2501 Thioredoxin, nucleored 99.1 7.3E-10 1.6E-14 70.7 6.6 70 41-111 32-131 (157)
134 PF02966 DIM1: Mitosis protein 99.1 1.4E-08 3.1E-13 62.7 12.0 102 23-127 3-116 (133)
135 PF00578 AhpC-TSA: AhpC/TSA fa 99.0 3.3E-09 7.1E-14 65.4 8.8 70 41-110 24-123 (124)
136 PRK10877 protein disulfide iso 99.0 3.2E-09 7E-14 72.7 9.5 80 41-127 106-230 (232)
137 PRK13703 conjugal pilus assemb 99.0 1.2E-08 2.6E-13 70.2 12.3 85 41-127 142-240 (248)
138 cd02970 PRX_like2 Peroxiredoxi 99.0 5.7E-09 1.2E-13 66.3 9.8 42 42-83 24-67 (149)
139 PRK11200 grxA glutaredoxin 1; 99.0 7.6E-09 1.7E-13 60.1 9.4 76 45-128 2-83 (85)
140 cd03015 PRX_Typ2cys Peroxiredo 99.0 6.2E-09 1.4E-13 68.2 10.0 87 41-127 28-156 (173)
141 KOG3425 Uncharacterized conser 99.0 4.9E-09 1.1E-13 63.6 8.6 79 25-105 9-104 (128)
142 cd03018 PRX_AhpE_like Peroxire 99.0 6.1E-09 1.3E-13 66.3 9.7 82 42-124 28-147 (149)
143 PRK10606 btuE putative glutath 99.0 2.7E-09 5.8E-14 70.6 7.6 41 41-82 24-66 (183)
144 PRK10382 alkyl hydroperoxide r 99.0 5.3E-08 1.1E-12 64.7 13.5 87 41-127 30-155 (187)
145 KOG0911 Glutaredoxin-related p 99.0 6E-10 1.3E-14 74.5 3.8 97 21-124 2-98 (227)
146 TIGR03137 AhpC peroxiredoxin. 99.0 1.3E-08 2.9E-13 67.5 10.2 86 41-126 30-154 (187)
147 cd02971 PRX_family Peroxiredox 98.9 9.6E-09 2.1E-13 64.7 8.6 74 41-115 21-129 (140)
148 TIGR02180 GRX_euk Glutaredoxin 98.9 1.6E-08 3.6E-13 58.2 7.9 61 46-110 1-66 (84)
149 PRK13190 putative peroxiredoxi 98.9 3.1E-08 6.8E-13 66.5 10.3 87 41-127 26-153 (202)
150 cd02968 SCO SCO (an acronym fo 98.9 1.3E-08 2.8E-13 64.3 7.6 42 41-82 21-68 (142)
151 TIGR03143 AhpF_homolog putativ 98.9 5.3E-08 1.2E-12 74.4 11.5 78 42-124 476-554 (555)
152 PRK11657 dsbG disulfide isomer 98.8 3.1E-08 6.8E-13 68.6 9.0 83 41-126 116-250 (251)
153 cd02976 NrdH NrdH-redoxin (Nrd 98.8 5.1E-08 1.1E-12 54.4 8.1 67 46-123 2-72 (73)
154 TIGR02183 GRXA Glutaredoxin, G 98.8 5.4E-08 1.2E-12 56.7 8.4 75 46-128 2-82 (86)
155 KOG3171 Conserved phosducin-li 98.8 2.7E-08 5.9E-13 66.3 7.3 107 17-126 135-249 (273)
156 cd03023 DsbA_Com1_like DsbA fa 98.8 9E-08 1.9E-12 60.9 9.1 40 41-80 4-43 (154)
157 cd03020 DsbA_DsbC_DsbG DsbA fa 98.8 3.8E-08 8.3E-13 65.8 7.6 76 41-124 76-197 (197)
158 PRK15317 alkyl hydroperoxide r 98.8 1.5E-07 3.3E-12 71.3 11.2 81 41-126 115-196 (517)
159 TIGR03143 AhpF_homolog putativ 98.7 1.4E-07 3E-12 72.1 10.4 106 20-128 346-454 (555)
160 PRK15000 peroxidase; Provision 98.7 3.5E-07 7.7E-12 61.4 10.8 86 41-126 33-160 (200)
161 KOG0913 Thiol-disulfide isomer 98.7 2.6E-09 5.7E-14 71.8 0.5 99 19-126 23-124 (248)
162 PRK13599 putative peroxiredoxi 98.7 3.6E-07 7.7E-12 62.0 10.2 87 41-127 27-155 (215)
163 cd03016 PRX_1cys Peroxiredoxin 98.7 4.6E-07 1E-11 60.9 10.5 85 43-127 26-153 (203)
164 PTZ00137 2-Cys peroxiredoxin; 98.7 6.2E-07 1.3E-11 62.4 10.8 86 41-126 97-223 (261)
165 PF13462 Thioredoxin_4: Thiore 98.6 5.3E-07 1.1E-11 58.0 9.5 80 41-126 11-162 (162)
166 TIGR02194 GlrX_NrdH Glutaredox 98.6 3.6E-07 7.8E-12 51.4 7.7 67 47-123 2-71 (72)
167 PF00462 Glutaredoxin: Glutare 98.6 4.1E-07 8.9E-12 49.3 7.6 55 46-108 1-59 (60)
168 PRK10329 glutaredoxin-like pro 98.6 1E-06 2.3E-11 50.7 9.5 71 46-127 3-76 (81)
169 PRK13191 putative peroxiredoxi 98.6 8E-07 1.7E-11 60.3 10.3 87 41-127 32-160 (215)
170 TIGR03140 AhpF alkyl hydropero 98.6 9E-07 1.9E-11 67.2 11.3 81 41-126 116-197 (515)
171 KOG3170 Conserved phosducin-li 98.6 4E-07 8.8E-12 60.2 7.5 104 17-126 88-199 (240)
172 COG1225 Bcp Peroxiredoxin [Pos 98.6 4.9E-06 1.1E-10 53.6 12.2 89 40-128 28-156 (157)
173 PRK13189 peroxiredoxin; Provis 98.5 1.8E-06 3.8E-11 58.9 10.4 87 41-127 34-162 (222)
174 cd03419 GRX_GRXh_1_2_like Glut 98.5 1.4E-06 3.1E-11 49.9 8.2 59 46-110 2-65 (82)
175 TIGR02190 GlrX-dom Glutaredoxi 98.5 2.5E-06 5.5E-11 48.8 8.8 61 42-110 6-69 (79)
176 PF05768 DUF836: Glutaredoxin- 98.5 6.4E-07 1.4E-11 51.6 6.3 77 46-125 2-81 (81)
177 PF13848 Thioredoxin_6: Thiore 98.5 1.5E-05 3.2E-10 52.2 13.2 103 19-126 76-184 (184)
178 PTZ00253 tryparedoxin peroxida 98.5 2E-06 4.2E-11 57.7 8.7 86 41-126 35-162 (199)
179 cd03019 DsbA_DsbA DsbA family, 98.4 2.3E-06 5E-11 55.8 8.5 39 41-79 14-53 (178)
180 TIGR02189 GlrX-like_plant Glut 98.4 1.3E-06 2.9E-11 52.2 6.7 57 46-110 10-73 (99)
181 cd02066 GRX_family Glutaredoxi 98.4 4.3E-06 9.3E-11 46.2 7.2 57 46-110 2-62 (72)
182 PHA03050 glutaredoxin; Provisi 98.3 9.2E-06 2E-10 49.3 8.6 60 46-110 15-81 (108)
183 PF07449 HyaE: Hydrogenase-1 e 98.3 6.3E-06 1.4E-10 49.8 7.3 84 29-118 17-105 (107)
184 PRK10954 periplasmic protein d 98.3 6.4E-06 1.4E-10 55.5 8.1 41 41-81 36-80 (207)
185 PF00837 T4_deiodinase: Iodoth 98.3 9.9E-06 2.1E-10 55.2 8.7 106 17-127 79-236 (237)
186 PF01216 Calsequestrin: Calseq 98.3 7.1E-05 1.5E-09 53.6 13.1 106 16-128 30-144 (383)
187 cd02983 P5_C P5 family, C-term 98.3 7.9E-05 1.7E-09 46.7 12.0 105 20-128 2-115 (130)
188 cd03029 GRX_hybridPRX5 Glutare 98.3 2.8E-05 6E-10 43.5 8.9 66 46-124 3-71 (72)
189 KOG2603 Oligosaccharyltransfer 98.2 1.9E-05 4.1E-10 55.6 8.8 107 18-127 38-165 (331)
190 TIGR02181 GRX_bact Glutaredoxi 98.2 7.6E-06 1.7E-10 46.6 5.8 57 46-110 1-61 (79)
191 cd03027 GRX_DEP Glutaredoxin ( 98.1 5.4E-05 1.2E-09 42.5 8.3 57 46-110 3-63 (73)
192 TIGR00365 monothiol glutaredox 98.0 6.2E-05 1.4E-09 44.8 7.9 51 52-110 25-79 (97)
193 cd03072 PDI_b'_ERp44 PDIb' fam 98.0 8.4E-05 1.8E-09 45.3 8.3 86 41-128 15-108 (111)
194 COG0695 GrxC Glutaredoxin and 98.0 0.00012 2.7E-09 42.0 8.3 66 46-122 3-75 (80)
195 cd02981 PDI_b_family Protein D 98.0 0.00017 3.7E-09 42.4 9.2 92 23-126 2-96 (97)
196 cd03418 GRX_GRXb_1_3_like Glut 98.0 0.00018 3.8E-09 40.3 8.6 58 46-110 2-63 (75)
197 PRK10638 glutaredoxin 3; Provi 98.0 9.8E-05 2.1E-09 42.5 7.5 57 46-110 4-64 (83)
198 cd02972 DsbA_family DsbA famil 97.9 4.8E-05 1E-09 44.2 6.2 58 46-104 1-91 (98)
199 cd02974 AhpF_NTD_N Alkyl hydro 97.9 0.00038 8.2E-09 41.2 9.9 87 27-128 6-94 (94)
200 cd03028 GRX_PICOT_like Glutare 97.9 0.00034 7.4E-09 41.0 9.0 51 52-110 21-75 (90)
201 PRK10824 glutaredoxin-4; Provi 97.8 0.00017 3.7E-09 44.2 6.9 70 33-110 6-82 (115)
202 cd03073 PDI_b'_ERp72_ERp57 PDI 97.8 0.00026 5.7E-09 43.2 7.6 73 55-127 31-110 (111)
203 COG1331 Highly conserved prote 97.8 0.0002 4.3E-09 55.4 8.1 79 34-112 35-125 (667)
204 PTZ00062 glutaredoxin; Provisi 97.7 0.00047 1E-08 46.5 8.5 74 29-110 100-180 (204)
205 PRK12759 bifunctional gluaredo 97.7 0.00017 3.7E-09 53.5 6.5 57 46-110 4-72 (410)
206 PF07912 ERp29_N: ERp29, N-ter 97.7 0.0021 4.6E-08 39.6 10.2 99 22-127 6-118 (126)
207 cd03013 PRX5_like Peroxiredoxi 97.5 0.0012 2.5E-08 42.6 8.5 75 41-115 28-140 (155)
208 PRK15317 alkyl hydroperoxide r 97.5 0.0013 2.8E-08 50.2 10.0 87 27-128 6-94 (517)
209 TIGR03140 AhpF alkyl hydropero 97.5 0.0014 3.1E-08 49.9 10.0 88 27-128 6-95 (515)
210 COG1651 DsbG Protein-disulfide 97.5 0.00086 1.9E-08 46.1 7.6 36 87-128 207-243 (244)
211 PF01323 DSBA: DSBA-like thior 97.4 0.0033 7.1E-08 41.4 9.8 33 45-77 1-33 (193)
212 KOG1752 Glutaredoxin and relat 97.3 0.0016 3.4E-08 39.3 6.1 58 46-110 16-79 (104)
213 cd02990 UAS_FAF1 UAS family, F 97.3 0.019 4.1E-07 36.3 11.7 94 31-127 6-132 (136)
214 PF13743 Thioredoxin_5: Thiore 96.9 0.0032 6.9E-08 41.5 5.6 32 48-79 2-34 (176)
215 cd03066 PDI_b_Calsequestrin_mi 96.9 0.036 7.8E-07 33.0 10.0 95 22-127 2-100 (102)
216 COG0386 BtuE Glutathione perox 96.9 0.02 4.3E-07 36.8 8.5 90 39-129 22-161 (162)
217 PF13848 Thioredoxin_6: Thiore 96.7 0.025 5.5E-07 36.8 8.4 64 59-127 7-74 (184)
218 cd02978 KaiB_like KaiB-like fa 96.6 0.016 3.4E-07 32.5 5.8 56 45-101 3-60 (72)
219 PF06053 DUF929: Domain of unk 96.5 0.016 3.4E-07 40.3 6.8 58 39-103 55-112 (249)
220 COG3019 Predicted metal-bindin 96.2 0.1 2.3E-06 32.9 8.4 75 42-126 24-102 (149)
221 PHA03075 glutaredoxin-like pro 96.1 0.011 2.5E-07 35.9 3.9 36 43-81 2-37 (123)
222 cd03067 PDI_b_PDIR_N PDIb fami 96.0 0.16 3.5E-06 30.4 8.3 98 23-125 4-109 (112)
223 cd02977 ArsC_family Arsenate R 95.9 0.013 2.9E-07 35.1 3.5 74 47-126 2-85 (105)
224 COG0450 AhpC Peroxiredoxin [Po 95.9 0.19 4.2E-06 33.6 9.1 86 42-127 33-160 (194)
225 COG1999 Uncharacterized protei 95.8 0.24 5.1E-06 33.6 9.6 90 39-128 64-204 (207)
226 TIGR02654 circ_KaiB circadian 95.7 0.061 1.3E-06 31.3 5.5 76 43-120 3-82 (87)
227 PRK09301 circadian clock prote 95.7 0.11 2.3E-06 31.2 6.7 78 42-121 5-86 (103)
228 cd03040 GST_N_mPGES2 GST_N fam 95.7 0.17 3.6E-06 28.2 8.9 71 46-128 2-76 (77)
229 cd03031 GRX_GRX_like Glutaredo 95.7 0.093 2E-06 33.6 6.8 57 46-110 2-72 (147)
230 cd03060 GST_N_Omega_like GST_N 95.5 0.16 3.5E-06 27.8 6.8 58 47-109 2-60 (71)
231 cd03041 GST_N_2GST_N GST_N fam 95.5 0.21 4.5E-06 27.9 8.6 69 47-126 3-75 (77)
232 COG4545 Glutaredoxin-related p 95.4 0.063 1.4E-06 30.2 4.7 57 47-109 5-77 (85)
233 TIGR01617 arsC_related transcr 95.2 0.054 1.2E-06 33.2 4.6 35 47-86 2-36 (117)
234 cd03036 ArsC_like Arsenate Red 95.2 0.042 9.1E-07 33.4 4.0 34 47-85 2-35 (111)
235 cd03069 PDI_b_ERp57 PDIb famil 95.1 0.38 8.2E-06 28.7 9.1 91 22-127 2-103 (104)
236 PRK01655 spxA transcriptional 95.0 0.069 1.5E-06 33.5 4.7 34 46-84 2-35 (131)
237 KOG2640 Thioredoxin [Function 94.9 0.013 2.9E-07 41.6 1.4 84 42-127 76-161 (319)
238 KOG2507 Ubiquitin regulatory p 94.7 0.42 9.1E-06 35.7 8.5 92 34-127 11-110 (506)
239 cd03068 PDI_b_ERp72 PDIb famil 94.7 0.52 1.1E-05 28.4 11.1 94 22-126 2-106 (107)
240 cd03035 ArsC_Yffb Arsenate Red 94.6 0.069 1.5E-06 32.2 3.7 34 47-85 2-35 (105)
241 cd03037 GST_N_GRX2 GST_N famil 94.4 0.42 9.2E-06 26.1 7.0 54 48-108 3-58 (71)
242 PF13417 GST_N_3: Glutathione 94.1 0.52 1.1E-05 26.1 8.6 69 49-128 2-71 (75)
243 cd03032 ArsC_Spx Arsenate Redu 94.0 0.2 4.3E-06 30.6 5.0 34 46-84 2-35 (115)
244 PRK12559 transcriptional regul 94.0 0.14 3.1E-06 32.1 4.4 33 46-83 2-34 (131)
245 PF07689 KaiB: KaiB domain; I 93.9 0.037 8E-07 31.9 1.5 52 49-101 3-56 (82)
246 COG0278 Glutaredoxin-related p 93.7 0.85 1.8E-05 27.3 6.9 73 33-110 6-83 (105)
247 TIGR02742 TrbC_Ftype type-F co 93.7 1.1 2.3E-05 28.2 8.4 89 29-125 12-112 (130)
248 KOG0852 Alkyl hydroperoxide re 93.3 0.83 1.8E-05 30.2 7.0 88 39-126 30-159 (196)
249 KOG1651 Glutathione peroxidase 93.2 0.47 1E-05 31.0 5.7 94 35-128 27-169 (171)
250 cd03051 GST_N_GTT2_like GST_N 93.1 0.29 6.2E-06 26.6 4.3 56 47-107 2-61 (74)
251 cd03059 GST_N_SspA GST_N famil 92.9 0.83 1.8E-05 24.8 8.5 69 47-126 2-71 (73)
252 PRK13344 spxA transcriptional 92.9 0.29 6.3E-06 30.7 4.4 33 46-83 2-34 (132)
253 cd00570 GST_N_family Glutathio 92.8 0.36 7.8E-06 25.5 4.3 55 48-108 3-59 (71)
254 PF09673 TrbC_Ftype: Type-F co 92.6 1.5 3.2E-05 26.8 8.9 70 29-105 11-80 (113)
255 PF02630 SCO1-SenC: SCO1/SenC; 92.4 0.5 1.1E-05 31.0 5.3 44 40-83 50-98 (174)
256 PF06764 DUF1223: Protein of u 92.2 2.1 4.5E-05 29.0 8.1 74 48-127 4-97 (202)
257 cd03061 GST_N_CLIC GST_N famil 92.0 1.5 3.3E-05 25.7 7.9 65 51-127 19-85 (91)
258 PF13778 DUF4174: Domain of un 91.5 2.1 4.5E-05 26.3 9.2 86 40-127 8-111 (118)
259 KOG2792 Putative cytochrome C 91.5 0.74 1.6E-05 32.3 5.4 89 39-127 136-274 (280)
260 COG3531 Predicted protein-disu 91.5 0.45 9.8E-06 32.0 4.2 42 86-128 165-209 (212)
261 PF06953 ArsD: Arsenical resis 90.5 2.7 5.9E-05 26.1 6.8 59 62-125 31-99 (123)
262 PF04134 DUF393: Protein of un 90.2 0.44 9.6E-06 28.7 3.2 58 49-107 2-61 (114)
263 cd03025 DsbA_FrnE_like DsbA fa 90.0 0.59 1.3E-05 30.6 3.9 27 46-72 3-29 (193)
264 COG2761 FrnE Predicted dithiol 90.0 0.92 2E-05 31.2 4.8 37 87-128 176-213 (225)
265 cd03024 DsbA_FrnE DsbA family, 89.8 0.59 1.3E-05 30.9 3.8 36 85-125 165-201 (201)
266 COG3011 Predicted thiol-disulf 89.4 2.8 6.2E-05 26.5 6.3 68 41-110 5-74 (137)
267 cd03045 GST_N_Delta_Epsilon GS 88.8 1.3 2.7E-05 24.2 4.2 56 47-108 2-61 (74)
268 PF04592 SelP_N: Selenoprotein 88.4 5.1 0.00011 27.8 7.5 42 41-82 25-71 (238)
269 TIGR03759 conj_TIGR03759 integ 88.3 5 0.00011 27.1 7.2 37 42-81 108-144 (200)
270 COG2077 Tpx Peroxiredoxin [Pos 87.2 6.1 0.00013 25.6 7.4 42 41-82 43-85 (158)
271 cd03033 ArsC_15kD Arsenate Red 86.3 1.7 3.6E-05 26.5 3.9 33 46-83 2-34 (113)
272 cd03022 DsbA_HCCA_Iso DsbA fam 86.2 1.1 2.4E-05 29.3 3.3 33 86-124 158-191 (192)
273 KOG1422 Intracellular Cl- chan 86.1 7.4 0.00016 26.6 7.1 65 53-127 20-84 (221)
274 cd03055 GST_N_Omega GST_N fami 85.8 4.8 0.0001 23.0 6.4 53 46-102 19-72 (89)
275 PRK00366 ispG 4-hydroxy-3-meth 85.3 5.1 0.00011 29.5 6.4 75 52-126 272-355 (360)
276 COG3634 AhpF Alkyl hydroperoxi 85.2 7.4 0.00016 29.1 7.2 80 41-125 115-195 (520)
277 cd03074 PDI_b'_Calsequestrin_C 84.9 6.7 0.00015 23.9 9.4 88 41-128 19-120 (120)
278 COG0821 gcpE 1-hydroxy-2-methy 84.7 5.3 0.00011 29.2 6.2 75 53-127 263-350 (361)
279 KOG0855 Alkyl hydroperoxide re 84.6 0.77 1.7E-05 30.2 1.9 42 41-82 89-133 (211)
280 COG5429 Uncharacterized secret 84.2 4.3 9.2E-05 28.2 5.4 81 42-126 41-139 (261)
281 PRK13730 conjugal transfer pil 83.8 2.7 5.9E-05 28.5 4.2 37 84-122 151-188 (212)
282 cd03056 GST_N_4 GST_N family, 83.6 2.8 6E-05 22.6 3.8 56 48-109 3-62 (73)
283 TIGR00014 arsC arsenate reduct 82.0 3 6.6E-05 25.3 3.7 33 47-84 2-34 (114)
284 PF09822 ABC_transp_aux: ABC-t 81.5 16 0.00034 25.6 12.1 54 41-94 24-87 (271)
285 cd03034 ArsC_ArsC Arsenate Red 81.4 3.3 7.2E-05 25.0 3.8 32 47-83 2-33 (112)
286 cd03052 GST_N_GDAP1 GST_N fami 79.4 5 0.00011 22.1 3.8 57 47-109 2-62 (73)
287 PF08806 Sep15_SelM: Sep15/Sel 77.8 4.5 9.7E-05 23.0 3.3 33 95-127 40-75 (78)
288 PF00255 GSHPx: Glutathione pe 76.7 13 0.00029 22.4 5.3 42 40-82 19-62 (108)
289 cd03053 GST_N_Phi GST_N family 76.1 9.5 0.00021 20.7 4.4 57 46-108 2-62 (76)
290 PF06491 Disulph_isomer: Disul 76.0 17 0.00037 22.9 14.1 105 19-127 15-131 (136)
291 PF04551 GcpE: GcpE protein; 74.0 17 0.00036 26.9 6.0 82 41-127 263-358 (359)
292 cd03021 DsbA_GSTK DsbA family, 73.6 4.4 9.6E-05 27.2 3.0 37 87-124 171-208 (209)
293 COG5309 Exo-beta-1,3-glucanase 72.9 13 0.00028 26.5 5.1 98 24-127 58-161 (305)
294 PRK09481 sspA stringent starva 71.1 28 0.0006 23.2 7.0 60 44-108 9-68 (211)
295 COG1393 ArsC Arsenate reductas 70.7 9.6 0.00021 23.4 3.7 31 46-81 3-33 (117)
296 cd03025 DsbA_FrnE_like DsbA fa 70.4 6.3 0.00014 25.7 3.1 21 86-107 160-180 (193)
297 TIGR00612 ispG_gcpE 1-hydroxy- 69.7 12 0.00027 27.4 4.6 71 41-113 254-333 (346)
298 cd03049 GST_N_3 GST_N family, 68.4 17 0.00036 19.6 5.1 58 48-108 3-61 (73)
299 COG3411 Ferredoxin [Energy pro 68.2 16 0.00034 20.0 3.8 30 96-128 16-45 (64)
300 PRK10853 putative reductase; P 68.2 11 0.00024 23.1 3.6 32 46-82 2-33 (118)
301 PF03960 ArsC: ArsC family; I 68.1 17 0.00036 21.7 4.4 32 49-85 1-32 (110)
302 PF11287 DUF3088: Protein of u 67.8 9.6 0.00021 23.3 3.2 52 53-104 23-76 (112)
303 PRK13602 putative ribosomal pr 67.3 21 0.00046 20.3 7.3 52 37-94 21-72 (82)
304 PF09695 YtfJ_HI0045: Bacteria 67.3 32 0.00069 22.5 9.8 85 41-125 36-155 (160)
305 KOG0911 Glutaredoxin-related p 66.4 40 0.00088 23.3 6.4 75 31-110 128-206 (227)
306 TIGR01616 nitro_assoc nitrogen 65.4 18 0.00038 22.5 4.2 32 46-82 3-34 (126)
307 KOG2244 Highly conserved prote 64.9 8 0.00017 30.4 3.0 71 32-103 102-184 (786)
308 COG2761 FrnE Predicted dithiol 62.5 22 0.00048 24.6 4.5 30 44-73 6-35 (225)
309 PRK10026 arsenate reductase; P 62.0 20 0.00043 22.8 4.0 32 46-82 4-35 (141)
310 KOG2990 C2C2-type Zn-finger pr 61.8 9.4 0.0002 27.3 2.7 42 27-70 27-71 (317)
311 PRK01045 ispH 4-hydroxy-3-meth 61.7 48 0.001 24.0 6.3 96 26-125 166-276 (298)
312 cd03022 DsbA_HCCA_Iso DsbA fam 60.3 13 0.00029 24.1 3.2 25 48-72 3-27 (192)
313 cd03062 TRX_Fd_Sucrase TRX-lik 59.5 22 0.00049 20.9 3.7 29 96-128 52-83 (97)
314 cd03030 GRX_SH3BGR Glutaredoxi 57.8 36 0.00078 19.9 5.0 16 73-88 30-45 (92)
315 PF14424 Toxin-deaminase: The 56.8 47 0.001 20.9 5.8 27 51-80 105-131 (133)
316 PRK13601 putative L7Ae-like ri 54.2 40 0.00087 19.3 6.8 53 39-99 20-72 (82)
317 cd03024 DsbA_FrnE DsbA family, 52.1 31 0.00068 22.6 3.9 25 48-72 3-27 (201)
318 PF05176 ATP-synt_10: ATP10 pr 49.5 90 0.0019 22.0 8.8 84 41-125 121-247 (252)
319 COG5494 Predicted thioredoxin/ 49.4 86 0.0019 21.7 7.3 73 46-126 13-86 (265)
320 TIGR02652 conserved hypothetic 47.8 7.2 0.00016 24.8 0.3 12 53-64 11-22 (163)
321 KOG0406 Glutathione S-transfer 47.7 94 0.002 21.6 5.9 49 54-109 18-69 (231)
322 TIGR00216 ispH_lytB (E)-4-hydr 47.5 85 0.0018 22.5 5.6 96 27-126 165-275 (280)
323 PF02401 LYTB: LytB protein; 47.5 13 0.00028 26.6 1.6 93 27-126 166-276 (281)
324 TIGR01287 nifH nitrogenase iro 47.5 15 0.00031 25.7 1.9 58 35-94 214-271 (275)
325 cd06353 PBP1_BmpA_Med_like Per 47.3 94 0.002 21.6 5.9 49 27-82 42-90 (258)
326 PHA02151 hypothetical protein 47.3 13 0.00027 24.3 1.4 16 40-55 201-216 (217)
327 PF09654 DUF2396: Protein of u 47.3 7.2 0.00016 24.8 0.2 12 53-64 8-19 (161)
328 PF05679 CHGN: Chondroitin N-a 45.9 1.4E+02 0.0031 23.2 7.5 56 42-98 281-340 (499)
329 TIGR02743 TraW type-F conjugat 44.6 28 0.00061 23.6 2.8 28 80-109 170-197 (202)
330 cd01840 SGNH_hydrolase_yrhL_li 44.0 79 0.0017 19.7 5.5 25 41-65 50-74 (150)
331 COG1107 Archaea-specific RecJ- 42.1 82 0.0018 25.3 5.2 74 33-108 334-429 (715)
332 KOG1364 Predicted ubiquitin re 41.8 44 0.00095 24.7 3.5 53 74-127 133-188 (356)
333 cd03058 GST_N_Tau GST_N family 41.7 57 0.0012 17.4 8.5 69 48-126 3-72 (74)
334 PLN02817 glutathione dehydroge 40.7 1.3E+02 0.0028 21.2 6.2 48 52-102 71-118 (265)
335 TIGR00862 O-ClC intracellular 39.7 1.3E+02 0.0028 20.9 8.2 51 52-109 17-69 (236)
336 PF14639 YqgF: Holliday-juncti 39.5 62 0.0013 20.8 3.7 42 39-81 59-106 (150)
337 PF07511 DUF1525: Protein of u 39.2 85 0.0018 19.3 4.0 22 16-37 16-37 (114)
338 PF01216 Calsequestrin: Calseq 38.9 1.7E+02 0.0036 22.0 11.7 98 20-128 146-247 (383)
339 PF00352 TBP: Transcription fa 38.6 76 0.0017 18.0 3.9 29 97-127 49-78 (86)
340 PRK13738 conjugal transfer pil 38.1 25 0.00053 24.0 1.7 29 81-110 169-198 (209)
341 PRK13669 hypothetical protein; 37.8 80 0.0017 18.0 5.4 53 64-128 20-72 (78)
342 PRK12360 4-hydroxy-3-methylbut 37.2 1.6E+02 0.0034 21.2 5.9 95 26-126 167-276 (281)
343 COG1198 PriA Primosomal protei 37.1 59 0.0013 26.7 3.9 32 53-84 477-517 (730)
344 PF07801 DUF1647: Protein of u 36.4 76 0.0016 20.3 3.6 43 42-84 58-102 (142)
345 cd02980 TRX_Fd_family Thioredo 36.2 75 0.0016 17.2 3.6 28 96-127 49-77 (77)
346 PLN02925 4-hydroxy-3-methylbut 35.7 75 0.0016 26.0 4.2 75 53-127 636-723 (733)
347 COG3531 Predicted protein-disu 35.7 42 0.00092 22.8 2.5 35 44-79 2-36 (212)
348 PF11072 DUF2859: Protein of u 34.3 59 0.0013 20.8 2.9 17 84-101 120-136 (142)
349 cd03038 GST_N_etherase_LigE GS 34.0 86 0.0019 17.3 6.6 67 51-126 13-81 (84)
350 TIGR03765 ICE_PFL_4695 integra 33.5 57 0.0012 19.7 2.6 37 61-101 62-98 (105)
351 PRK15113 glutathione S-transfe 32.5 1.3E+02 0.0029 19.9 4.7 57 46-108 6-68 (214)
352 COG1125 OpuBA ABC-type proline 32.3 1.7E+02 0.0036 21.2 5.1 77 25-110 136-216 (309)
353 COG4604 CeuD ABC-type enteroch 32.2 1.8E+02 0.0038 20.3 5.6 50 53-111 167-217 (252)
354 PF04940 BLUF: Sensors of blue 31.9 1.1E+02 0.0024 17.8 4.3 31 96-127 34-64 (93)
355 cd03375 TPP_OGFOR Thiamine pyr 31.8 1.1E+02 0.0023 20.3 4.0 28 24-51 156-183 (193)
356 cd03054 GST_N_Metaxin GST_N fa 31.6 87 0.0019 16.6 7.3 45 52-108 14-58 (72)
357 PHA02513 V1 structural protein 31.2 25 0.00053 21.5 0.8 26 48-73 33-58 (135)
358 PRK06683 hypothetical protein; 31.0 1.1E+02 0.0023 17.4 7.2 51 38-94 22-72 (82)
359 PF03227 GILT: Gamma interfero 30.9 1.2E+02 0.0026 18.0 4.6 21 46-66 3-24 (108)
360 PF07700 HNOB: Heme NO binding 30.9 1.5E+02 0.0033 19.1 5.4 40 42-81 127-168 (171)
361 cd05863 Ig2_VEGFR-3 Second imm 30.7 46 0.001 17.9 1.8 14 97-110 12-25 (67)
362 TIGR00595 priA primosomal prot 30.5 53 0.0011 25.5 2.7 23 61-83 272-294 (505)
363 PLN02378 glutathione S-transfe 30.4 1.7E+02 0.0036 19.5 5.7 48 51-101 17-64 (213)
364 PF02775 TPP_enzyme_C: Thiamin 30.3 1.3E+02 0.0027 18.9 4.1 31 19-49 121-153 (153)
365 cd05855 Ig_TrkB_d5 Fifth domai 29.9 39 0.00084 19.0 1.5 19 91-110 5-25 (79)
366 KOG1731 FAD-dependent sulfhydr 29.8 89 0.0019 24.9 3.7 54 73-128 215-269 (606)
367 KOG4175 Tryptophan synthase al 28.9 1.7E+02 0.0037 20.2 4.5 42 29-70 3-44 (268)
368 KOG0912 Thiol-disulfide isomer 28.9 2.4E+02 0.0052 20.9 7.1 90 39-128 224-319 (375)
369 smart00140 NGF Nerve growth fa 28.9 28 0.0006 21.1 0.7 29 53-81 70-101 (106)
370 cd03081 TRX_Fd_NuoE_FDH_gamma 28.6 1.1E+02 0.0025 17.0 3.3 27 96-127 54-80 (80)
371 PF14097 SpoVAE: Stage V sporu 28.5 90 0.0019 20.7 3.0 57 18-78 31-87 (180)
372 PF12617 LdpA_C: Iron-Sulfur b 28.5 1.8E+02 0.0038 19.6 4.5 57 59-115 22-83 (183)
373 cd03050 GST_N_Theta GST_N fami 27.9 1.1E+02 0.0023 16.4 4.1 55 48-108 3-61 (76)
374 PF07293 DUF1450: Protein of u 27.9 1.2E+02 0.0027 17.2 3.7 56 61-128 17-72 (78)
375 PF11453 DUF2950: Protein of u 27.5 85 0.0018 22.4 3.0 31 89-120 225-255 (271)
376 cd03376 TPP_PFOR_porB_like Thi 27.1 1.3E+02 0.0028 20.7 3.9 29 24-52 172-200 (235)
377 cd06538 CIDE_N_FSP27 CIDE_N do 26.4 94 0.002 17.8 2.6 23 87-110 30-52 (79)
378 COG2101 SPT15 TATA-box binding 26.3 1.9E+02 0.0041 19.4 4.2 28 98-127 54-82 (185)
379 PHA02131 hypothetical protein 25.5 1.2E+02 0.0025 16.1 3.7 27 96-122 28-54 (70)
380 PF06180 CbiK: Cobalt chelatas 25.5 1.5E+02 0.0033 21.0 4.0 39 44-82 3-42 (262)
381 PRK00087 4-hydroxy-3-methylbut 25.3 3.4E+02 0.0075 21.9 6.4 93 26-124 164-271 (647)
382 PF09936 Methyltrn_RNA_4: SAM- 25.1 1.2E+02 0.0025 20.4 3.1 27 27-56 120-146 (185)
383 cd02009 TPP_SHCHC_synthase Thi 25.0 1.4E+02 0.003 19.4 3.6 28 22-49 145-172 (175)
384 COG3640 CooC CO dehydrogenase 25.0 1.3E+02 0.0028 21.3 3.5 29 65-94 22-50 (255)
385 cd02003 TPP_IolD Thiamine pyro 24.8 1.4E+02 0.0031 19.9 3.7 29 22-50 154-182 (205)
386 PRK06163 hypothetical protein; 24.8 1.5E+02 0.0033 19.9 3.8 30 24-53 145-174 (202)
387 cd02015 TPP_AHAS Thiamine pyro 24.8 1.7E+02 0.0036 19.1 4.0 32 21-52 143-174 (186)
388 PF10865 DUF2703: Domain of un 24.7 1.7E+02 0.0036 18.2 3.7 52 53-110 14-73 (120)
389 cd06537 CIDE_N_B CIDE_N domain 24.7 1E+02 0.0022 17.7 2.5 23 87-110 30-52 (81)
390 cd03042 GST_N_Zeta GST_N famil 24.5 1.2E+02 0.0026 15.8 4.0 54 49-108 4-61 (73)
391 PRK10387 glutaredoxin 2; Provi 24.4 2.1E+02 0.0046 18.7 8.0 56 48-108 3-58 (210)
392 PLN02949 transferase, transfer 24.3 3.2E+02 0.007 21.0 5.9 70 41-110 30-111 (463)
393 cd00568 TPP_enzymes Thiamine p 24.1 1.7E+02 0.0037 18.3 3.9 30 20-49 137-166 (168)
394 PF06289 FlbD: Flagellar prote 23.9 1.3E+02 0.0029 16.2 3.9 30 96-127 24-54 (60)
395 PF10589 NADH_4Fe-4S: NADH-ubi 23.6 44 0.00096 16.7 0.8 20 52-71 17-36 (46)
396 cd00652 TBP_TLF TATA box bindi 23.6 2.2E+02 0.0048 18.7 4.3 27 99-127 141-168 (174)
397 cd02010 TPP_ALS Thiamine pyrop 23.6 1.7E+02 0.0036 19.0 3.8 30 21-50 139-168 (177)
398 PF10407 Cytokin_check_N: Cdc1 23.6 1.5E+02 0.0032 16.6 4.3 34 46-79 5-41 (73)
399 COG4752 Uncharacterized protei 23.3 1.5E+02 0.0032 19.4 3.3 28 28-58 122-149 (190)
400 PF09547 Spore_IV_A: Stage IV 23.1 2.3E+02 0.0049 22.1 4.7 43 39-83 177-219 (492)
401 KOG0854 Alkyl hydroperoxide re 22.9 1.6E+02 0.0034 19.9 3.4 42 41-82 30-75 (224)
402 cd04517 TLF TBP-like factors ( 22.6 2.3E+02 0.0051 18.6 4.3 28 99-128 141-169 (174)
403 TIGR03757 conj_TIGR03757 integ 22.6 2E+02 0.0043 17.7 3.9 21 17-37 18-38 (113)
404 KOG1371 UDP-glucose 4-epimeras 22.6 3.3E+02 0.0072 20.3 5.5 60 40-103 25-84 (343)
405 PLN00062 TATA-box-binding prot 22.5 2.4E+02 0.0051 18.8 4.3 27 99-127 140-167 (179)
406 cd02008 TPP_IOR_alpha Thiamine 22.5 1.7E+02 0.0036 19.0 3.6 31 22-52 144-177 (178)
407 KOG4277 Uncharacterized conser 22.5 3.3E+02 0.0071 20.2 8.7 77 40-126 151-229 (468)
408 KOG1387 Glycosyltransferase [C 22.5 2.3E+02 0.0051 21.4 4.5 56 42-98 41-107 (465)
409 PRK08573 phosphomethylpyrimidi 22.5 3.6E+02 0.0078 20.6 7.7 56 73-128 376-447 (448)
410 PRK11752 putative S-transferas 22.3 2.8E+02 0.0061 19.3 5.8 56 47-103 45-107 (264)
411 COG4175 ProV ABC-type proline/ 22.2 80 0.0017 23.5 2.1 66 37-111 177-246 (386)
412 PF01986 DUF123: Domain of unk 22.1 43 0.00094 20.0 0.7 32 26-58 61-92 (99)
413 cd03070 PDI_b_ERp44 PDIb famil 22.0 1.8E+02 0.0039 17.0 5.5 52 23-82 2-54 (91)
414 PRK11865 pyruvate ferredoxin o 21.8 2.2E+02 0.0048 20.6 4.3 58 24-82 183-244 (299)
415 cd04971 Ig_TrKABC_d5 Fifth dom 21.6 76 0.0017 17.6 1.7 14 97-110 12-25 (81)
416 cd02979 PHOX_C FAD-dependent P 21.5 2.4E+02 0.0052 18.3 6.4 42 85-126 124-166 (167)
417 PF01947 DUF98: Protein of unk 21.3 1.3E+02 0.0029 19.2 2.9 30 83-112 106-137 (149)
418 cd02004 TPP_BZL_OCoD_HPCL Thia 21.2 2.4E+02 0.0051 18.0 4.3 30 21-50 141-170 (172)
419 cd04518 TBP_archaea archaeal T 21.2 2.6E+02 0.0056 18.5 4.4 27 99-127 140-167 (174)
420 cd03021 DsbA_GSTK DsbA family, 21.2 2.6E+02 0.0057 18.6 4.7 27 46-72 3-29 (209)
421 COG0295 Cdd Cytidine deaminase 20.9 61 0.0013 20.5 1.2 23 53-80 87-109 (134)
422 PRK01018 50S ribosomal protein 20.8 2E+02 0.0042 16.9 6.9 51 39-94 28-78 (99)
423 TIGR00550 nadA quinolinate syn 20.6 2.4E+02 0.0052 20.5 4.3 53 29-82 62-116 (310)
424 PF15409 PH_8: Pleckstrin homo 20.6 1.9E+02 0.0042 16.8 4.3 28 100-127 58-85 (89)
425 cd05892 Ig_Myotilin_C C-termin 20.3 91 0.002 17.0 1.8 14 97-110 12-25 (75)
426 PRK00394 transcription factor; 20.2 2.7E+02 0.0059 18.4 4.4 27 99-127 141-168 (179)
427 KOG3286 Selenoprotein T [Gener 20.2 3E+02 0.0066 18.9 4.5 71 44-115 70-143 (226)
428 PF06999 Suc_Fer-like: Sucrase 20.2 2E+02 0.0044 19.4 3.8 31 96-126 183-214 (230)
429 TIGR02949 anti_SigH_actin anti 20.1 97 0.0021 17.6 1.9 21 51-71 36-56 (84)
430 PF11551 Omp28: Outer membrane 20.1 35 0.00075 22.7 0.0 26 83-109 7-32 (184)
No 1
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.8e-28 Score=152.89 Aligned_cols=106 Identities=30% Similarity=0.650 Sum_probs=98.3
Q ss_pred CceEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC-cEEEEEECCCChhHHhhcCCccccc
Q 032982 20 PLVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLP 98 (129)
Q Consensus 20 ~~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~~~~~~~~~~v~~~~P 98 (129)
.....+.+..++++.+ .+.+.||+|.|||+||++|+.+.|.++++..++.+ ++|+.+|+|++.+++.+|+|. ++|
T Consensus 42 ~~~~~~~s~~~~~~~V---i~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~-avP 117 (150)
T KOG0910|consen 42 ATLFNVQSDSEFDDKV---INSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEIS-AVP 117 (150)
T ss_pred cccccccCHHHHHHHH---HccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhccee-eee
Confidence 4566777788888877 55799999999999999999999999999999987 999999999999999999999 999
Q ss_pred EEEEEeCCeEEEEEeCC-CHHHHHHHHHhhhC
Q 032982 99 TFVLVKRGKEIDRVVGA-KKDELQMKTEKRRN 129 (129)
Q Consensus 99 t~~i~~~G~~~~~~~g~-~~~~l~~~i~~~~~ 129 (129)
|+++|+||+..+++.|. +.++|.++|++.+.
T Consensus 118 tvlvfknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 118 TVLVFKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EEEEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 99999999999999999 99999999999763
No 2
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.5e-25 Score=134.51 Aligned_cols=102 Identities=44% Similarity=0.773 Sum_probs=91.4
Q ss_pred eechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCcccccEEEEEe
Q 032982 25 LQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 104 (129)
Q Consensus 25 i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~ 104 (129)
+.+.++++.....+..++++++|.||++||++|+.+.|.+.+++.+|+++.|+.+|+|+..+++++++|. .+||+++++
T Consensus 4 v~~~~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~-~~PTf~f~k 82 (106)
T KOG0907|consen 4 VETVSDLDLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVK-AMPTFVFYK 82 (106)
T ss_pred EEehhhHHHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCce-EeeEEEEEE
Confidence 3444555555556556789999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CCeEEEEEeCCCHHHHHHHHHhh
Q 032982 105 RGKEIDRVVGAKKDELQMKTEKR 127 (129)
Q Consensus 105 ~G~~~~~~~g~~~~~l~~~i~~~ 127 (129)
+|+.+.++.|.+.+++++.+.++
T Consensus 83 ~g~~~~~~vGa~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 83 GGEEVDEVVGANKAELEKKIAKH 105 (106)
T ss_pred CCEEEEEEecCCHHHHHHHHHhc
Confidence 99999999999888999988765
No 3
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.94 E-value=5.8e-25 Score=132.96 Aligned_cols=97 Identities=25% Similarity=0.342 Sum_probs=87.1
Q ss_pred chhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCCh---hHHhhcCCcccccEEEEE
Q 032982 27 SKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP---EAAKAFDLIDVLPTFVLV 103 (129)
Q Consensus 27 ~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~---~~~~~~~v~~~~Pt~~i~ 103 (129)
+.+++++.+.++ .+++++|.||++||++|+.+.|.|++++++++++.|+.+|.++++ +++++|+|. ++||+++|
T Consensus 2 ~~~~~~~~i~~~--~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~-~~Pt~~~~ 78 (103)
T cd02985 2 SVEELDEALKKA--KGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKII-EVPHFLFY 78 (103)
T ss_pred CHHHHHHHHHHc--CCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCC-cCCEEEEE
Confidence 457788877543 699999999999999999999999999999977999999999874 789999999 99999999
Q ss_pred eCCeEEEEEeCCCHHHHHHHHHh
Q 032982 104 KRGKEIDRVVGAKKDELQMKTEK 126 (129)
Q Consensus 104 ~~G~~~~~~~g~~~~~l~~~i~~ 126 (129)
++|+.+.++.|..+++|.+.|..
T Consensus 79 ~~G~~v~~~~G~~~~~l~~~~~~ 101 (103)
T cd02985 79 KDGEKIHEEEGIGPDELIGDVLY 101 (103)
T ss_pred eCCeEEEEEeCCCHHHHHHHHHh
Confidence 99999999999988888887754
No 4
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.93 E-value=1.5e-25 Score=136.51 Aligned_cols=84 Identities=19% Similarity=0.360 Sum_probs=75.8
Q ss_pred hHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC-cEEEEEECCCChhHHhhcCCcccccEEEEEeCCe
Q 032982 29 HQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGK 107 (129)
Q Consensus 29 ~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~ 107 (129)
+++++.+.. .++++++|.||++||++|+.+.|.+++++.++++ +.|+.||+|++++++++|+|. ++||+++|++|+
T Consensus 3 ~~~~~~i~~--~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~-~iPTf~~fk~G~ 79 (114)
T cd02954 3 WAVDQAILS--EEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELY-DPPTVMFFFRNK 79 (114)
T ss_pred HHHHHHHhc--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCC-CCCEEEEEECCE
Confidence 455655542 2688999999999999999999999999999998 899999999999999999999 999999999999
Q ss_pred EEEEEeCC
Q 032982 108 EIDRVVGA 115 (129)
Q Consensus 108 ~~~~~~g~ 115 (129)
.+.+..|.
T Consensus 80 ~v~~~~G~ 87 (114)
T cd02954 80 HMKIDLGT 87 (114)
T ss_pred EEEEEcCC
Confidence 99988775
No 5
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.93 E-value=4.9e-24 Score=128.20 Aligned_cols=99 Identities=33% Similarity=0.631 Sum_probs=90.5
Q ss_pred EeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcC-CcEEEEEECCCChhHHhhcCCcccccEEEE
Q 032982 24 ELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYT-DVQFIKIDVDWLPEAAKAFDLIDVLPTFVL 102 (129)
Q Consensus 24 ~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~-~v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i 102 (129)
.+++ ++|++.+.. ++++++|+||++||++|+.+.|.+.++++.++ ++.|+.+|+++++.++++|++. ++||+++
T Consensus 3 ~lt~-~~f~~~i~~---~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~-~~Pt~~~ 77 (103)
T PF00085_consen 3 VLTD-ENFEKFINE---SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVK-SVPTIIF 77 (103)
T ss_dssp EEST-TTHHHHHTT---TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCS-SSSEEEE
T ss_pred ECCH-HHHHHHHHc---cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCC-CCCEEEE
Confidence 4444 777776632 58999999999999999999999999999999 5999999999999999999999 9999999
Q ss_pred EeCCeEEEEEeCC-CHHHHHHHHHhh
Q 032982 103 VKRGKEIDRVVGA-KKDELQMKTEKR 127 (129)
Q Consensus 103 ~~~G~~~~~~~g~-~~~~l~~~i~~~ 127 (129)
+++|+...++.|. +.++|.+||++|
T Consensus 78 ~~~g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 78 FKNGKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EETTEEEEEEESSSSHHHHHHHHHHH
T ss_pred EECCcEEEEEECCCCHHHHHHHHHcC
Confidence 9999999999999 999999999986
No 6
>PHA02278 thioredoxin-like protein
Probab=99.92 E-value=4.2e-24 Score=128.89 Aligned_cols=92 Identities=18% Similarity=0.310 Sum_probs=80.6
Q ss_pred chhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC-cEEEEEECCCC----hhHHhhcCCcccccEEE
Q 032982 27 SKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWL----PEAAKAFDLIDVLPTFV 101 (129)
Q Consensus 27 ~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~~----~~~~~~~~v~~~~Pt~~ 101 (129)
+.++|.+.+ .++++++|.||++||++|+.+.|.++++++++.. +.|+.+|++.+ +.++++|+|. ++||++
T Consensus 3 ~~~~~~~~i----~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~-~iPT~i 77 (103)
T PHA02278 3 SLVDLNTAI----RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIM-STPVLI 77 (103)
T ss_pred CHHHHHHHH----hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCc-cccEEE
Confidence 455666554 4789999999999999999999999999887544 88999999986 6899999999 999999
Q ss_pred EEeCCeEEEEEeCC-CHHHHHHH
Q 032982 102 LVKRGKEIDRVVGA-KKDELQMK 123 (129)
Q Consensus 102 i~~~G~~~~~~~g~-~~~~l~~~ 123 (129)
+|++|+.+.++.|. +.+++.++
T Consensus 78 ~fk~G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 78 GYKDGQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred EEECCEEEEEEeCCCCHHHHHhh
Confidence 99999999999997 88888765
No 7
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.4e-24 Score=149.18 Aligned_cols=109 Identities=26% Similarity=0.494 Sum_probs=99.8
Q ss_pred cCCCceEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC-cEEEEEECCCChhHHhhcCCcc
Q 032982 17 AKTPLVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLID 95 (129)
Q Consensus 17 ~~~~~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~~~~~~~~~~v~~ 95 (129)
+..+.++.+++ .+|.+.+..+ +..+||+|.||+|||++|+.+.|.++++..++.+ +.+++||+|+++.++.+|||.
T Consensus 20 ~~a~~I~dvT~-anfe~~V~~~-S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiq- 96 (304)
T COG3118 20 MAAPGIKDVTE-ANFEQEVIQS-SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQ- 96 (304)
T ss_pred cccccceechH-hHHHHHHHHH-ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcC-
Confidence 34445888877 8999988774 4677999999999999999999999999999998 999999999999999999999
Q ss_pred cccEEEEEeCCeEEEEEeCC-CHHHHHHHHHhhh
Q 032982 96 VLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKRR 128 (129)
Q Consensus 96 ~~Pt~~i~~~G~~~~~~~g~-~~~~l~~~i~~~~ 128 (129)
++||++.|++|+.++.+.|. +++++.+|+++++
T Consensus 97 sIPtV~af~dGqpVdgF~G~qPesqlr~~ld~~~ 130 (304)
T COG3118 97 SIPTVYAFKDGQPVDGFQGAQPESQLRQFLDKVL 130 (304)
T ss_pred cCCeEEEeeCCcCccccCCCCcHHHHHHHHHHhc
Confidence 99999999999999999999 8889999999875
No 8
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.92 E-value=8.5e-24 Score=127.65 Aligned_cols=98 Identities=23% Similarity=0.476 Sum_probs=87.7
Q ss_pred EeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC--cEEEEEECCCChhHHhhcCCcccccEEE
Q 032982 24 ELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWLPEAAKAFDLIDVLPTFV 101 (129)
Q Consensus 24 ~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~--v~~~~v~~~~~~~~~~~~~v~~~~Pt~~ 101 (129)
.+.+.++++..+ .++++++|+||++||++|+.+.|.++++.+.+++ +.|+.+|++ +++++++|+|. ++||++
T Consensus 3 ~i~~~~~~~~~i----~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~-~~Pt~~ 76 (102)
T cd02948 3 EINNQEEWEELL----SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGK-CEPTFL 76 (102)
T ss_pred EccCHHHHHHHH----ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCC-cCcEEE
Confidence 456777777754 3688999999999999999999999999999874 889999999 77889999999 999999
Q ss_pred EEeCCeEEEEEeCCCHHHHHHHHHhh
Q 032982 102 LVKRGKEIDRVVGAKKDELQMKTEKR 127 (129)
Q Consensus 102 i~~~G~~~~~~~g~~~~~l~~~i~~~ 127 (129)
+|++|+.+.+..|.+.+++.++|+++
T Consensus 77 ~~~~g~~~~~~~G~~~~~~~~~i~~~ 102 (102)
T cd02948 77 FYKNGELVAVIRGANAPLLNKTITEL 102 (102)
T ss_pred EEECCEEEEEEecCChHHHHHHHhhC
Confidence 99999999999999999999998764
No 9
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.92 E-value=9.5e-24 Score=129.26 Aligned_cols=105 Identities=16% Similarity=0.257 Sum_probs=91.5
Q ss_pred ecCCCceEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC-cEEEEEECCCChhHH-hhcCC
Q 032982 16 HAKTPLVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAA-KAFDL 93 (129)
Q Consensus 16 ~~~~~~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~~~~~~-~~~~v 93 (129)
.++.+.+..+++ ++|++.+.- ..++++++|.||++||++|+.+.|.++++++.+++ +.|+.||++++..++ ++|+|
T Consensus 5 ~~~~~~v~~l~~-~~f~~~~~v-~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I 82 (113)
T cd03006 5 FSQRSPVLDFYK-GQLDYAEEL-RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHF 82 (113)
T ss_pred cCCCCCeEEech-hhhHHHHhc-ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCC
Confidence 455677888877 777765432 45899999999999999999999999999999987 999999999999998 58999
Q ss_pred cccccEEEEEeCCeEEEEEeCC-CHHHHHHH
Q 032982 94 IDVLPTFVLVKRGKEIDRVVGA-KKDELQMK 123 (129)
Q Consensus 94 ~~~~Pt~~i~~~G~~~~~~~g~-~~~~l~~~ 123 (129)
. ++||+++|++|+...++.|. +.+.+..|
T Consensus 83 ~-~~PTl~lf~~g~~~~~y~G~~~~~~i~~~ 112 (113)
T cd03006 83 F-YFPVIHLYYRSRGPIEYKGPMRAPYMEKF 112 (113)
T ss_pred c-ccCEEEEEECCccceEEeCCCCHHHHHhh
Confidence 9 99999999999987888888 88888776
No 10
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.92 E-value=1.4e-23 Score=132.33 Aligned_cols=104 Identities=20% Similarity=0.275 Sum_probs=92.3
Q ss_pred eEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC-cEEEEEECCCChhHHhhcCCcccccEE
Q 032982 22 VMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTF 100 (129)
Q Consensus 22 ~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~~~~~~~~~~v~~~~Pt~ 100 (129)
+.++.+.+++++.+... ++++++|.||++||++|+.+.|.|+++++++++ +.|+.||+|++++++++|+|. +.|++
T Consensus 5 l~~l~s~~e~d~~I~~~--~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~-~~~t~ 81 (142)
T PLN00410 5 LPHLHSGWAVDQAILAE--EERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELY-DPCTV 81 (142)
T ss_pred HhhhCCHHHHHHHHHhc--CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCcc-CCCcE
Confidence 45678889999888644 799999999999999999999999999999998 888999999999999999999 88766
Q ss_pred E-EEeCCe-EEEEEeC--------C-CHHHHHHHHHhhh
Q 032982 101 V-LVKRGK-EIDRVVG--------A-KKDELQMKTEKRR 128 (129)
Q Consensus 101 ~-i~~~G~-~~~~~~g--------~-~~~~l~~~i~~~~ 128 (129)
+ +|++|+ .+.+..| . +.++|...++.++
T Consensus 82 ~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~ 120 (142)
T PLN00410 82 MFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
T ss_pred EEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHH
Confidence 6 889999 8888888 5 7889988887754
No 11
>PRK09381 trxA thioredoxin; Provisional
Probab=99.91 E-value=3.4e-23 Score=126.22 Aligned_cols=105 Identities=26% Similarity=0.546 Sum_probs=94.0
Q ss_pred CceEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC-cEEEEEECCCChhHHhhcCCccccc
Q 032982 20 PLVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLP 98 (129)
Q Consensus 20 ~~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~~~~~~~~~~v~~~~P 98 (129)
..++.++. +++.+.+. ..+++++|+||++||++|+.+.|.++++++.+++ +.++.+|++..+.++++|++. ++|
T Consensus 3 ~~v~~~~~-~~~~~~v~---~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~-~~P 77 (109)
T PRK09381 3 DKIIHLTD-DSFDTDVL---KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIR-GIP 77 (109)
T ss_pred CcceeeCh-hhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCC-cCC
Confidence 46777765 67776663 3688999999999999999999999999999976 999999999999999999999 999
Q ss_pred EEEEEeCCeEEEEEeCC-CHHHHHHHHHhhhC
Q 032982 99 TFVLVKRGKEIDRVVGA-KKDELQMKTEKRRN 129 (129)
Q Consensus 99 t~~i~~~G~~~~~~~g~-~~~~l~~~i~~~~~ 129 (129)
|+++|++|+.+.++.|. +.+++..+|++++.
T Consensus 78 t~~~~~~G~~~~~~~G~~~~~~l~~~i~~~~~ 109 (109)
T PRK09381 78 TLLLFKNGEVAATKVGALSKGQLKEFLDANLA 109 (109)
T ss_pred EEEEEeCCeEEEEecCCCCHHHHHHHHHHhcC
Confidence 99999999999999998 99999999998763
No 12
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.91 E-value=1.7e-23 Score=124.81 Aligned_cols=93 Identities=24% Similarity=0.414 Sum_probs=83.1
Q ss_pred HHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC-cEEEEEECCCChhHHhhcCCcccccEEEEEeCCeE
Q 032982 30 QWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKE 108 (129)
Q Consensus 30 ~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~~ 108 (129)
++++.+.. ..+++++|+||++||++|+.+.|.++++++.+++ +.++.+|+++++.++++|++. ++||++++++|+.
T Consensus 2 ~f~~~i~~--~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~-~~Pt~~~~~~g~~ 78 (96)
T cd02956 2 NFQQVLQE--STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQ-ALPTVYLFAAGQP 78 (96)
T ss_pred ChHHHHHh--cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCC-CCCEEEEEeCCEE
Confidence 34555533 2578999999999999999999999999999976 999999999999999999999 9999999999999
Q ss_pred EEEEeCC-CHHHHHHHHH
Q 032982 109 IDRVVGA-KKDELQMKTE 125 (129)
Q Consensus 109 ~~~~~g~-~~~~l~~~i~ 125 (129)
+.++.|. +.++|..+|+
T Consensus 79 ~~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 79 VDGFQGAQPEEQLRQMLD 96 (96)
T ss_pred eeeecCCCCHHHHHHHhC
Confidence 9999998 8999998874
No 13
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.91 E-value=2e-23 Score=126.19 Aligned_cols=99 Identities=17% Similarity=0.308 Sum_probs=86.4
Q ss_pred ceEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC-cEEEEEECCCChhHHhhcCCcccccE
Q 032982 21 LVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPT 99 (129)
Q Consensus 21 ~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~~~~~~~~~~v~~~~Pt 99 (129)
.++.++. +++++.+. .++++++|.||++||++|+.+.|.++++++++.+ +.|+.+|++++++++++|+|. ++||
T Consensus 2 ~v~~l~~-~~f~~~i~---~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~-~~Pt 76 (104)
T cd03004 2 SVITLTP-EDFPELVL---NRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIR-AYPT 76 (104)
T ss_pred cceEcCH-HHHHHHHh---cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCC-cccE
Confidence 4556654 67877663 3577999999999999999999999999999876 999999999999999999999 9999
Q ss_pred EEEEeCC-eEEEEEeCC-C-HHHHHHHH
Q 032982 100 FVLVKRG-KEIDRVVGA-K-KDELQMKT 124 (129)
Q Consensus 100 ~~i~~~G-~~~~~~~g~-~-~~~l~~~i 124 (129)
+++|.+| +...++.|. + .++|.+||
T Consensus 77 ~~~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 77 IRLYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EEEEcCCCCCceEccCCCCCHHHHHhhC
Confidence 9999887 888889997 6 88888774
No 14
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.91 E-value=2.5e-23 Score=127.35 Aligned_cols=99 Identities=18% Similarity=0.235 Sum_probs=86.7
Q ss_pred chhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcC--CcEEEEEECCCChhHHhhcCCcccccEEEEEe
Q 032982 27 SKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 104 (129)
Q Consensus 27 ~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~ 104 (129)
+.+++++.+.. ...+++++|.||++||++|+.+.|.++++.+.++ ++.++.+|+++++.++++|+|. ++||+++|+
T Consensus 10 ~~~~~~~~~~~-~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~-~~Pt~~i~~ 87 (111)
T cd02963 10 TFSQYENEIVP-KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAH-SVPAIVGII 87 (111)
T ss_pred eHHHHHHhhcc-ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCc-cCCEEEEEE
Confidence 34566554422 2368999999999999999999999999999986 3899999999999999999999 999999999
Q ss_pred CCeEEEEEeCC-CHHHHHHHHHhh
Q 032982 105 RGKEIDRVVGA-KKDELQMKTEKR 127 (129)
Q Consensus 105 ~G~~~~~~~g~-~~~~l~~~i~~~ 127 (129)
+|+.+.+..|. +.++|.++|+++
T Consensus 88 ~g~~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 88 NGQVTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred CCEEEEEecCCCCHHHHHHHHhcC
Confidence 99999999998 899999999864
No 15
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.91 E-value=2.2e-23 Score=125.36 Aligned_cols=83 Identities=17% Similarity=0.379 Sum_probs=77.5
Q ss_pred cCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECC-CChhHHhhcCCcccccEEEEEeCCeEEEEEeCC-CH
Q 032982 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD-WLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KK 117 (129)
Q Consensus 40 ~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~-~~~~~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~-~~ 117 (129)
.++++++|.||++||++|+.+.|.++++++.++++.++.+|.+ +++.++++|+|. ++||+++|++| .+.++.|. +.
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~-~~PT~~lf~~g-~~~~~~G~~~~ 93 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVV-GFPTILLFNST-PRVRYNGTRTL 93 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCe-ecCEEEEEcCC-ceeEecCCCCH
Confidence 4799999999999999999999999999999988999999999 889999999999 99999999999 77889998 89
Q ss_pred HHHHHHH
Q 032982 118 DELQMKT 124 (129)
Q Consensus 118 ~~l~~~i 124 (129)
++|.+||
T Consensus 94 ~~l~~f~ 100 (100)
T cd02999 94 DSLAAFY 100 (100)
T ss_pred HHHHhhC
Confidence 9988875
No 16
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.91 E-value=5.4e-23 Score=126.20 Aligned_cols=92 Identities=25% Similarity=0.383 Sum_probs=84.0
Q ss_pred CCceEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCccccc
Q 032982 19 TPLVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLP 98 (129)
Q Consensus 19 ~~~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~~P 98 (129)
++.+..|++.+++.+.+. ++++++|+||++||++|+.+.|.++++++++++++|+++|++++++++++|+|. ++|
T Consensus 3 ~g~v~~i~~~~~~~~~i~----~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~-~vP 77 (113)
T cd02989 3 HGKYREVSDEKEFFEIVK----SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIK-VLP 77 (113)
T ss_pred CCCeEEeCCHHHHHHHHh----CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCc-cCC
Confidence 567888988888877663 568999999999999999999999999999999999999999999999999999 999
Q ss_pred EEEEEeCCeEEEEEeCC
Q 032982 99 TFVLVKRGKEIDRVVGA 115 (129)
Q Consensus 99 t~~i~~~G~~~~~~~g~ 115 (129)
|+++|++|+.+.++.|.
T Consensus 78 t~l~fk~G~~v~~~~g~ 94 (113)
T cd02989 78 TVILFKNGKTVDRIVGF 94 (113)
T ss_pred EEEEEECCEEEEEEECc
Confidence 99999999999887654
No 17
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.91 E-value=2.7e-23 Score=125.15 Aligned_cols=97 Identities=12% Similarity=0.259 Sum_probs=85.4
Q ss_pred ceEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC-cEEEEEECCCChhHHhhcCCcccccE
Q 032982 21 LVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPT 99 (129)
Q Consensus 21 ~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~~~~~~~~~~v~~~~Pt 99 (129)
.++.++. +++++.+ .++++++|+||++||++|+.+.|.++++++.+++ +.|+.+|+++++.++++|+|. ++||
T Consensus 2 ~~~~l~~-~~f~~~v----~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~-~~Pt 75 (101)
T cd03003 2 EIVTLDR-GDFDAAV----NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVN-SYPS 75 (101)
T ss_pred CeEEcCH-hhHHHHh----cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCC-ccCE
Confidence 4566654 6777654 3568999999999999999999999999999987 899999999999999999999 9999
Q ss_pred EEEEeCCeEEEEEeCC-CHHHHHHH
Q 032982 100 FVLVKRGKEIDRVVGA-KKDELQMK 123 (129)
Q Consensus 100 ~~i~~~G~~~~~~~g~-~~~~l~~~ 123 (129)
+++|++|+...++.|. +.+.|.+|
T Consensus 76 ~~~~~~g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 76 LYVFPSGMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred EEEEcCCCCcccCCCCCCHHHHHhh
Confidence 9999999988888888 88888765
No 18
>PRK10996 thioredoxin 2; Provisional
Probab=99.91 E-value=7.2e-23 Score=129.91 Aligned_cols=101 Identities=29% Similarity=0.506 Sum_probs=89.2
Q ss_pred eEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC-cEEEEEECCCChhHHhhcCCcccccEE
Q 032982 22 VMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTF 100 (129)
Q Consensus 22 ~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~~~~~~~~~~v~~~~Pt~ 100 (129)
+..+ +.++++.. ..++++++|.||++||++|+.+.+.|.++++++.+ +.|+.+|+++++.++++|+|. ++||+
T Consensus 37 ~i~~-~~~~~~~~----i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~-~~Ptl 110 (139)
T PRK10996 37 VINA-TGETLDKL----LQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIR-SIPTI 110 (139)
T ss_pred CEEc-CHHHHHHH----HhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCC-ccCEE
Confidence 4444 34566654 34689999999999999999999999999998875 999999999999999999999 99999
Q ss_pred EEEeCCeEEEEEeCC-CHHHHHHHHHhhh
Q 032982 101 VLVKRGKEIDRVVGA-KKDELQMKTEKRR 128 (129)
Q Consensus 101 ~i~~~G~~~~~~~g~-~~~~l~~~i~~~~ 128 (129)
++|++|+.+.++.|. +.+++.+|+++++
T Consensus 111 ii~~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 111 MIFKNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred EEEECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 999999999999998 9999999999864
No 19
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.91 E-value=5.7e-23 Score=126.77 Aligned_cols=104 Identities=19% Similarity=0.180 Sum_probs=92.6
Q ss_pred CCceEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChh--Hh--hhhHHHHHHHHHc--CC-cEEEEEECCCChhHHhhc
Q 032982 19 TPLVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGP--CK--FIEPYVKDFAAMY--TD-VQFIKIDVDWLPEAAKAF 91 (129)
Q Consensus 19 ~~~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~--C~--~~~~~l~~~~~~~--~~-v~~~~v~~~~~~~~~~~~ 91 (129)
...+..+++ ++|++.+.+ ++.++|+.||+.||++ |+ .+.|.+.++++.+ ++ +.|+.||++++++++++|
T Consensus 8 ~~~v~~lt~-~nF~~~v~~---~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~ 83 (120)
T cd03065 8 KDRVIDLNE-KNYKQVLKK---YDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKL 83 (120)
T ss_pred CcceeeCCh-hhHHHHHHh---CCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHc
Confidence 446777766 888887744 6889999999999977 99 8999999999987 55 999999999999999999
Q ss_pred CCcccccEEEEEeCCeEEEEEeCC-CHHHHHHHHHhhh
Q 032982 92 DLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKRR 128 (129)
Q Consensus 92 ~v~~~~Pt~~i~~~G~~~~~~~g~-~~~~l~~~i~~~~ 128 (129)
+|. ++||+++|++|+.+. +.|. +.+.|.+||+++.
T Consensus 84 ~I~-~iPTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 84 GLD-EEDSIYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred CCc-cccEEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 999 999999999999887 8898 9999999999875
No 20
>PTZ00051 thioredoxin; Provisional
Probab=99.90 E-value=2.2e-22 Score=120.37 Aligned_cols=96 Identities=34% Similarity=0.708 Sum_probs=86.7
Q ss_pred eEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCcccccEEE
Q 032982 22 VMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFV 101 (129)
Q Consensus 22 ~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~~Pt~~ 101 (129)
+..+++.+++.+.+ ..+++++|+||++||++|+.+.+.++++++.++++.|+.+|.+++..++++|++. ++||++
T Consensus 2 v~~i~~~~~~~~~~----~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~-~~Pt~~ 76 (98)
T PTZ00051 2 VHIVTSQAEFESTL----SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENIT-SMPTFK 76 (98)
T ss_pred eEEecCHHHHHHHH----hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCc-eeeEEE
Confidence 56778877777654 3688999999999999999999999999999988999999999999999999999 999999
Q ss_pred EEeCCeEEEEEeCCCHHHHHH
Q 032982 102 LVKRGKEIDRVVGAKKDELQM 122 (129)
Q Consensus 102 i~~~G~~~~~~~g~~~~~l~~ 122 (129)
++++|+.+.++.|...++|.+
T Consensus 77 ~~~~g~~~~~~~G~~~~~~~~ 97 (98)
T PTZ00051 77 VFKNGSVVDTLLGANDEALKQ 97 (98)
T ss_pred EEeCCeEEEEEeCCCHHHhhc
Confidence 999999999999998777754
No 21
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.90 E-value=2.7e-22 Score=123.14 Aligned_cols=93 Identities=26% Similarity=0.440 Sum_probs=82.9
Q ss_pred CCceEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCccccc
Q 032982 19 TPLVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLP 98 (129)
Q Consensus 19 ~~~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~~P 98 (129)
.+.+.++++ +++.+.+... ..+++++|+||++||++|+.+.|.+++++++++++.|+.+|++++ .++++|+|. ++|
T Consensus 3 ~g~v~~i~~-~~f~~~i~~~-~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~-~~P 78 (113)
T cd02957 3 FGEVREISS-KEFLEEVTKA-SKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIK-VLP 78 (113)
T ss_pred CceEEEEcH-HHHHHHHHcc-CCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCC-cCC
Confidence 456788888 8888877542 135899999999999999999999999999999999999999998 999999999 999
Q ss_pred EEEEEeCCeEEEEEeCC
Q 032982 99 TFVLVKRGKEIDRVVGA 115 (129)
Q Consensus 99 t~~i~~~G~~~~~~~g~ 115 (129)
|+++|++|+.+.++.|.
T Consensus 79 t~~~f~~G~~v~~~~G~ 95 (113)
T cd02957 79 TLLVYKNGELIDNIVGF 95 (113)
T ss_pred EEEEEECCEEEEEEecH
Confidence 99999999999998774
No 22
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.89 E-value=3.9e-22 Score=119.02 Aligned_cols=94 Identities=30% Similarity=0.655 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHH-cCCcEEEEEECCCChhHHhhcCCcccccEEEEEeCC
Q 032982 28 KHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAM-YTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRG 106 (129)
Q Consensus 28 ~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~-~~~v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G 106 (129)
.+++++.+... .+++++|+||++||++|+.+.+.|+++.++ .+++.++.+|.++.++++++|++. ++||+++|.+|
T Consensus 2 ~~~~~~~~~~~--~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~-~~Pt~~~~~~g 78 (97)
T cd02984 2 EEEFEELLKSD--ASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEIT-AVPTFVFFRNG 78 (97)
T ss_pred HHHHHHHHhhC--CCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCc-cccEEEEEECC
Confidence 35666666543 379999999999999999999999999999 445999999999999999999999 99999999999
Q ss_pred eEEEEEeCCCHHHHHHHH
Q 032982 107 KEIDRVVGAKKDELQMKT 124 (129)
Q Consensus 107 ~~~~~~~g~~~~~l~~~i 124 (129)
+++.+..|.+.++|.+.|
T Consensus 79 ~~~~~~~g~~~~~l~~~~ 96 (97)
T cd02984 79 TIVDRVSGADPKELAKKV 96 (97)
T ss_pred EEEEEEeCCCHHHHHHhh
Confidence 999999999888888765
No 23
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.89 E-value=2.2e-22 Score=128.05 Aligned_cols=93 Identities=23% Similarity=0.450 Sum_probs=82.6
Q ss_pred HHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC-cEEEEEECCCC--hhHHhhcCCcccccEEEEE-eCCeEEE
Q 032982 35 YEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWL--PEAAKAFDLIDVLPTFVLV-KRGKEID 110 (129)
Q Consensus 35 ~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~~--~~~~~~~~v~~~~Pt~~i~-~~G~~~~ 110 (129)
+..+..++++++|+||++||++|+.+.|.+.++.+.+.+ +.|+.+|++.. ..++++|+|. ++||+++| ++|+++.
T Consensus 13 ~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~-~iPt~v~~~~~G~~v~ 91 (142)
T cd02950 13 PEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVD-GIPHFVFLDREGNEEG 91 (142)
T ss_pred HHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCC-CCCEEEEECCCCCEEE
Confidence 344456899999999999999999999999999999875 88999988864 5788999999 99999999 5899999
Q ss_pred EEeCC-CHHHHHHHHHhhh
Q 032982 111 RVVGA-KKDELQMKTEKRR 128 (129)
Q Consensus 111 ~~~g~-~~~~l~~~i~~~~ 128 (129)
++.|. +.++|.++|++++
T Consensus 92 ~~~G~~~~~~l~~~l~~l~ 110 (142)
T cd02950 92 QSIGLQPKQVLAQNLDALV 110 (142)
T ss_pred EEeCCCCHHHHHHHHHHHH
Confidence 99999 8899999998875
No 24
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.89 E-value=6.6e-22 Score=118.99 Aligned_cols=97 Identities=29% Similarity=0.484 Sum_probs=83.3
Q ss_pred ceEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC--cEEEEEECCCChhHHhhcCCccccc
Q 032982 21 LVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWLPEAAKAFDLIDVLP 98 (129)
Q Consensus 21 ~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~--v~~~~v~~~~~~~~~~~~~v~~~~P 98 (129)
.++.++. +++++.+ +++ ++|.||++||++|+.+.|.++++++.+++ +.++.+|+++++.++++|+|. ++|
T Consensus 2 ~v~~l~~-~~f~~~~-----~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~-~~P 73 (101)
T cd02994 2 NVVELTD-SNWTLVL-----EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVT-ALP 73 (101)
T ss_pred ceEEcCh-hhHHHHh-----CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCc-ccC
Confidence 4667754 6777644 233 68999999999999999999999988753 999999999999999999999 999
Q ss_pred EEEEEeCCeEEEEEeCC-CHHHHHHHHHh
Q 032982 99 TFVLVKRGKEIDRVVGA-KKDELQMKTEK 126 (129)
Q Consensus 99 t~~i~~~G~~~~~~~g~-~~~~l~~~i~~ 126 (129)
|++++++|+. .++.|. +.++|.++|++
T Consensus 74 t~~~~~~g~~-~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 74 TIYHAKDGVF-RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred EEEEeCCCCE-EEecCCCCHHHHHHHHhC
Confidence 9999999985 678888 99999999864
No 25
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.89 E-value=8.4e-22 Score=119.39 Aligned_cols=97 Identities=14% Similarity=0.280 Sum_probs=82.8
Q ss_pred hHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC-cEEEEEECCCChhHHhhcCCcccccEEEEEeCCe
Q 032982 29 HQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGK 107 (129)
Q Consensus 29 ~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~ 107 (129)
+++++.+..+ ++++++|.|+++||++|+.+.|.|+++++++++ +.|+.||+|+.++++++|+|. +.||+++|++|+
T Consensus 3 ~~~d~~i~~~--~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~-amPtfvffkngk 79 (114)
T cd02986 3 KEVDQAIKST--AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDIS-YIPSTIFFFNGQ 79 (114)
T ss_pred HHHHHHHHhc--CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCce-eCcEEEEEECCc
Confidence 5666666554 799999999999999999999999999999999 999999999999999999999 999999999998
Q ss_pred EEEE---------EeCC--CHHHHHHHHHhhh
Q 032982 108 EIDR---------VVGA--KKDELQMKTEKRR 128 (129)
Q Consensus 108 ~~~~---------~~g~--~~~~l~~~i~~~~ 128 (129)
.+.- +.+. +.+++...|+-.+
T Consensus 80 h~~~d~gt~~~~k~~~~~~~k~~~idi~e~~y 111 (114)
T cd02986 80 HMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIY 111 (114)
T ss_pred EEEEecCCCCCcEEEEEcCchhHHHHHHHHHH
Confidence 7653 3333 4677777776543
No 26
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.89 E-value=6.4e-22 Score=121.47 Aligned_cols=101 Identities=14% Similarity=0.254 Sum_probs=86.3
Q ss_pred hhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCcccccEEEEEeCCe
Q 032982 28 KHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGK 107 (129)
Q Consensus 28 ~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~ 107 (129)
..++...+.....+++.++|+||++||++|+.+.|.++++++.++.+.|+.+|.+++++++++|+|. ++||++++++|.
T Consensus 8 ~~~~~~~~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~-~vPt~~i~~~g~ 86 (113)
T cd02975 8 RKALKEEFFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVE-RVPTTIFLQDGG 86 (113)
T ss_pred HHHHHHHHHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCC-cCCEEEEEeCCe
Confidence 3455553444456788899999999999999999999999998867999999999999999999999 999999998875
Q ss_pred EEE--EEeCC-CHHHHHHHHHhhhC
Q 032982 108 EID--RVVGA-KKDELQMKTEKRRN 129 (129)
Q Consensus 108 ~~~--~~~g~-~~~~l~~~i~~~~~ 129 (129)
... ++.|. +.+++.++|+.+++
T Consensus 87 ~~~~~~~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 87 KDGGIRYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred ecceEEEEecCchHHHHHHHHHHHh
Confidence 544 67888 89999999998764
No 27
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.88 E-value=8.1e-22 Score=119.45 Aligned_cols=89 Identities=9% Similarity=0.109 Sum_probs=81.0
Q ss_pred hHHHHHHHHHhcCCCeEEEEEEcCC--ChhHhhhhHHHHHHHHHcCC-cEEEEEECCCChhHHhhcCCcccccEEEEEeC
Q 032982 29 HQWRSQYEASKQSDRLVVIYYTAAW--CGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKR 105 (129)
Q Consensus 29 ~~~~~~~~~~~~~~k~~lv~f~~~~--c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~ 105 (129)
.+|++.+ ..+.+++|.||++| ||.|+.+.|.|+++++++++ +.|+.+|++++++++.+|+|. ++||+++|++
T Consensus 18 ~~~~~~~----~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~-sIPTli~fkd 92 (111)
T cd02965 18 ATLDDWL----AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVL-RTPALLFFRD 92 (111)
T ss_pred ccHHHHH----hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCC-cCCEEEEEEC
Confidence 5666544 46889999999997 99999999999999999988 899999999999999999999 9999999999
Q ss_pred CeEEEEEeCC-CHHHHHH
Q 032982 106 GKEIDRVVGA-KKDELQM 122 (129)
Q Consensus 106 G~~~~~~~g~-~~~~l~~ 122 (129)
|+.+.+..|. +.+++..
T Consensus 93 Gk~v~~~~G~~~~~e~~~ 110 (111)
T cd02965 93 GRYVGVLAGIRDWDEYVA 110 (111)
T ss_pred CEEEEEEeCccCHHHHhh
Confidence 9999999998 8888753
No 28
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.88 E-value=1.4e-21 Score=132.25 Aligned_cols=108 Identities=19% Similarity=0.314 Sum_probs=94.9
Q ss_pred CCceEEeechhHHHHHHHHHh-cCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC-cEEEEEECCCChhHHhhcCCccc
Q 032982 19 TPLVMELQSKHQWRSQYEASK-QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDV 96 (129)
Q Consensus 19 ~~~~~~i~~~~~~~~~~~~~~-~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~~~~~~~~~~v~~~ 96 (129)
.+.++.+++ +++++.+.... ..+++++|+||++||++|+.+.|.++++++++++ +.|+.+|++++++++++|+|. +
T Consensus 29 ~~~Vv~Lt~-~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~-~ 106 (224)
T PTZ00443 29 ANALVLLND-KNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIK-G 106 (224)
T ss_pred CCCcEECCH-HHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCC-c
Confidence 456788865 78988775432 2468999999999999999999999999999987 999999999999999999999 9
Q ss_pred ccEEEEEeCCeEEEEEeCC-CHHHHHHHHHhhh
Q 032982 97 LPTFVLVKRGKEIDRVVGA-KKDELQMKTEKRR 128 (129)
Q Consensus 97 ~Pt~~i~~~G~~~~~~~g~-~~~~l~~~i~~~~ 128 (129)
+||+++|++|+.+....|. +.++|.+|+.+.+
T Consensus 107 ~PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~ 139 (224)
T PTZ00443 107 YPTLLLFDKGKMYQYEGGDRSTEKLAAFALGDF 139 (224)
T ss_pred CCEEEEEECCEEEEeeCCCCCHHHHHHHHHHHH
Confidence 9999999999998888887 9999999987753
No 29
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.88 E-value=9.4e-22 Score=119.73 Aligned_cols=98 Identities=23% Similarity=0.356 Sum_probs=82.5
Q ss_pred ceEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHc----C---CcEEEEEECCCChhHHhhcCC
Q 032982 21 LVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMY----T---DVQFIKIDVDWLPEAAKAFDL 93 (129)
Q Consensus 21 ~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~----~---~v~~~~v~~~~~~~~~~~~~v 93 (129)
.+..++. +++++.+ .++++++|.||++||++|+.+.|.++++++.+ + .+.++.+|++++++++++|+|
T Consensus 2 ~v~~l~~-~~f~~~i----~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v 76 (108)
T cd02996 2 EIVSLTS-GNIDDIL----QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRI 76 (108)
T ss_pred ceEEcCH-hhHHHHH----hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCC
Confidence 4666754 6777644 35789999999999999999999999888764 2 389999999999999999999
Q ss_pred cccccEEEEEeCCeE-EEEEeCC-CHHHHHHHH
Q 032982 94 IDVLPTFVLVKRGKE-IDRVVGA-KKDELQMKT 124 (129)
Q Consensus 94 ~~~~Pt~~i~~~G~~-~~~~~g~-~~~~l~~~i 124 (129)
. ++||+++|++|+. ...+.|. +.+.|.+||
T Consensus 77 ~-~~Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 77 N-KYPTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred C-cCCEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 9 9999999999984 4667788 888888775
No 30
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.88 E-value=9.7e-22 Score=119.63 Aligned_cols=99 Identities=19% Similarity=0.335 Sum_probs=84.6
Q ss_pred eEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC-cEEEEEECCC--ChhHHhhcCCccccc
Q 032982 22 VMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDW--LPEAAKAFDLIDVLP 98 (129)
Q Consensus 22 ~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~--~~~~~~~~~v~~~~P 98 (129)
++.+++ +++++.+. ..+++++|.||++||++|+.+.|.++++++.+++ +.|+.+|++. ++.++++|+|. ++|
T Consensus 2 v~~l~~-~~~~~~i~---~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~-~~P 76 (109)
T cd03002 2 VYELTP-KNFDKVVH---NTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQ-GFP 76 (109)
T ss_pred eEEcch-hhHHHHHh---cCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCC-cCC
Confidence 455655 67777664 3688899999999999999999999999999876 8999999998 88999999999 999
Q ss_pred EEEEEeCCe-----EEEEEeCC-CHHHHHHHHH
Q 032982 99 TFVLVKRGK-----EIDRVVGA-KKDELQMKTE 125 (129)
Q Consensus 99 t~~i~~~G~-----~~~~~~g~-~~~~l~~~i~ 125 (129)
|+++|++|+ ....+.|. +.+.|.+||.
T Consensus 77 t~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 77 TLKVFRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred EEEEEeCCCcccccccccccCccCHHHHHHHhC
Confidence 999998775 45567788 8999998873
No 31
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.88 E-value=2.5e-21 Score=126.98 Aligned_cols=107 Identities=24% Similarity=0.293 Sum_probs=91.6
Q ss_pred cCCCceEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCccc
Q 032982 17 AKTPLVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDV 96 (129)
Q Consensus 17 ~~~~~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~ 96 (129)
...+.+..|++.++|.+.+... ..+.+++|+||++||++|+.+.|.|.++++++++++|+.||+++. .++.+|+|. .
T Consensus 59 ~~~g~v~ei~~~~~f~~~v~~~-~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v~-~ 135 (175)
T cd02987 59 RRFGKVYELDSGEQFLDAIDKE-GKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDTD-A 135 (175)
T ss_pred CCCCeEEEcCCHHHHHHHHHhc-CCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCCC-C
Confidence 3578899998878888877542 234699999999999999999999999999999999999999987 899999999 9
Q ss_pred ccEEEEEeCCeEEEEEeCC--------CHHHHHHHHHh
Q 032982 97 LPTFVLVKRGKEIDRVVGA--------KKDELQMKTEK 126 (129)
Q Consensus 97 ~Pt~~i~~~G~~~~~~~g~--------~~~~l~~~i~~ 126 (129)
+||+++|++|+.+.++.|. +.+.|+.++.+
T Consensus 136 vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 136 LPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred CCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 9999999999999887654 35566666654
No 32
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.88 E-value=3.1e-21 Score=115.47 Aligned_cols=96 Identities=38% Similarity=0.730 Sum_probs=85.7
Q ss_pred hHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC-cEEEEEECCCChhHHhhcCCcccccEEEEEeCCe
Q 032982 29 HQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGK 107 (129)
Q Consensus 29 ~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~ 107 (129)
+++.+.+. .++++++|+||++||++|+.+.+.++++.+.+++ +.|+.+|.++++.++++|++. .+|+++++++|+
T Consensus 4 ~~~~~~~~---~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~-~~P~~~~~~~g~ 79 (101)
T TIGR01068 4 ANFDETIA---SSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIR-SIPTLLLFKNGK 79 (101)
T ss_pred HHHHHHHh---hcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCC-cCCEEEEEeCCc
Confidence 45555542 3577999999999999999999999999988875 999999999999999999999 999999999999
Q ss_pred EEEEEeCC-CHHHHHHHHHhhh
Q 032982 108 EIDRVVGA-KKDELQMKTEKRR 128 (129)
Q Consensus 108 ~~~~~~g~-~~~~l~~~i~~~~ 128 (129)
...+..|. +.+++..+|++.+
T Consensus 80 ~~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 80 EVDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred EeeeecCCCCHHHHHHHHHhhC
Confidence 99888898 8899999998763
No 33
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.88 E-value=3.6e-21 Score=123.33 Aligned_cols=93 Identities=22% Similarity=0.427 Sum_probs=81.6
Q ss_pred CCceEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC--cEEEEEECCCChhHHhhcCCccc
Q 032982 19 TPLVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWLPEAAKAFDLIDV 96 (129)
Q Consensus 19 ~~~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~--v~~~~v~~~~~~~~~~~~~v~~~ 96 (129)
+..+..++. +++++.+.. ..+++++|.||++||++|+.+.|.++++++++++ +.|+.||++++++++++|+|. +
T Consensus 27 ~~~v~~l~~-~~f~~~l~~--~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~-~ 102 (152)
T cd02962 27 PEHIKYFTP-KTLEEELER--DKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVS-T 102 (152)
T ss_pred CCccEEcCH-HHHHHHHHh--cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCce-e
Confidence 457777765 778776643 2578999999999999999999999999999863 999999999999999999998 7
Q ss_pred ------ccEEEEEeCCeEEEEEeCC
Q 032982 97 ------LPTFVLVKRGKEIDRVVGA 115 (129)
Q Consensus 97 ------~Pt~~i~~~G~~~~~~~g~ 115 (129)
+||+++|++|+++.+..|+
T Consensus 103 ~~~v~~~PT~ilf~~Gk~v~r~~G~ 127 (152)
T cd02962 103 SPLSKQLPTIILFQGGKEVARRPYY 127 (152)
T ss_pred cCCcCCCCEEEEEECCEEEEEEecc
Confidence 9999999999999999873
No 34
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.88 E-value=1.6e-21 Score=117.20 Aligned_cols=96 Identities=26% Similarity=0.508 Sum_probs=82.2
Q ss_pred eEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcC----CcEEEEEECCCChhHHhhcCCcccc
Q 032982 22 VMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYT----DVQFIKIDVDWLPEAAKAFDLIDVL 97 (129)
Q Consensus 22 ~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~----~v~~~~v~~~~~~~~~~~~~v~~~~ 97 (129)
++.+++ ++++..+. ++ +++|.||++||++|+.+.|.++++++.+. ++.++.+|+++++.++++|++. ++
T Consensus 2 ~~~l~~-~~f~~~~~----~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~-~~ 74 (102)
T cd03005 2 VLELTE-DNFDHHIA----EG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVR-GY 74 (102)
T ss_pred eeECCH-HHHHHHhh----cC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCC-cC
Confidence 345554 66776652 23 59999999999999999999999988875 3999999999999999999999 99
Q ss_pred cEEEEEeCCeEEEEEeCC-CHHHHHHHH
Q 032982 98 PTFVLVKRGKEIDRVVGA-KKDELQMKT 124 (129)
Q Consensus 98 Pt~~i~~~G~~~~~~~g~-~~~~l~~~i 124 (129)
||+++|++|+...++.|. +.++|.+||
T Consensus 75 Pt~~~~~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 75 PTLLLFKDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred CEEEEEeCCCeeeEeeCCCCHHHHHhhC
Confidence 999999999988889998 888888764
No 35
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=8.8e-22 Score=132.15 Aligned_cols=106 Identities=34% Similarity=0.631 Sum_probs=99.9
Q ss_pred CceEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCcccccE
Q 032982 20 PLVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPT 99 (129)
Q Consensus 20 ~~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~~Pt 99 (129)
++++.+.+..+|+..+..+ +.|.++|.|++.||++|+...|++..++.+|++..|+.||+|+....+..+||+ +.||
T Consensus 1 m~Vi~v~~d~df~~~ls~a--g~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~-amPT 77 (288)
T KOG0908|consen 1 MPVIVVNSDSDFQRELSAA--GGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVN-AMPT 77 (288)
T ss_pred CCeEEecCcHHHHHhhhcc--CceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcc-cCce
Confidence 3688899999999988665 889999999999999999999999999999999999999999999999999999 9999
Q ss_pred EEEEeCCeEEEEEeCCCHHHHHHHHHhhh
Q 032982 100 FVLVKRGKEIDRVVGAKKDELQMKTEKRR 128 (129)
Q Consensus 100 ~~i~~~G~~~~~~~g~~~~~l~~~i~~~~ 128 (129)
+++|+||+.++.+.|.++.-|++.|.+++
T Consensus 78 Fiff~ng~kid~~qGAd~~gLe~kv~~~~ 106 (288)
T KOG0908|consen 78 FIFFRNGVKIDQIQGADASGLEEKVAKYA 106 (288)
T ss_pred EEEEecCeEeeeecCCCHHHHHHHHHHHh
Confidence 99999999999999999999999998875
No 36
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.87 E-value=7.4e-21 Score=113.75 Aligned_cols=85 Identities=31% Similarity=0.579 Sum_probs=79.6
Q ss_pred cCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC-cEEEEEECCCChhHHhhcCCcccccEEEEEeCCeEEEEEeCC-CH
Q 032982 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KK 117 (129)
Q Consensus 40 ~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~-~~ 117 (129)
..+++++++||++||+.|+.+.+.++++.+++++ +.++.+|.++.+++.+++++. ++|+++++++|+++.++.|. +.
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~-~vPt~~i~~~g~~v~~~~g~~~~ 89 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIM-GTPTVQFFKDKELVKEISGVKMK 89 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCe-eccEEEEEECCeEEEEEeCCccH
Confidence 4799999999999999999999999999999875 999999999999999999999 99999999999999999998 88
Q ss_pred HHHHHHHH
Q 032982 118 DELQMKTE 125 (129)
Q Consensus 118 ~~l~~~i~ 125 (129)
+++.++++
T Consensus 90 ~~~~~~l~ 97 (97)
T cd02949 90 SEYREFIE 97 (97)
T ss_pred HHHHHhhC
Confidence 89888763
No 37
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.87 E-value=7.6e-21 Score=114.47 Aligned_cols=98 Identities=22% Similarity=0.389 Sum_probs=82.7
Q ss_pred eEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC-cEEEEEECCCChhHHhhcCCcccccEE
Q 032982 22 VMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTF 100 (129)
Q Consensus 22 ~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~~~~~~~~~~v~~~~Pt~ 100 (129)
+..+++ +++++.+. ..+++++|.||++||++|+.+.|.+.++++++++ +.|+.+|.++++.++++|+|. ++|++
T Consensus 2 v~~l~~-~~~~~~i~---~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~-~~P~~ 76 (103)
T cd03001 2 VVELTD-SNFDKKVL---NSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVR-GFPTI 76 (103)
T ss_pred eEEcCH-HhHHHHHh---cCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCC-ccCEE
Confidence 455544 66666553 3567799999999999999999999999999876 999999999999999999999 99999
Q ss_pred EEEeCC-eEEEEEeCC-CHHHHHHHH
Q 032982 101 VLVKRG-KEIDRVVGA-KKDELQMKT 124 (129)
Q Consensus 101 ~i~~~G-~~~~~~~g~-~~~~l~~~i 124 (129)
++|.+| +....+.|. +.++|.+|+
T Consensus 77 ~~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 77 KVFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred EEECCCCcceeecCCCCCHHHHHHHh
Confidence 999888 445567777 899998875
No 38
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.86 E-value=1.2e-20 Score=113.80 Aligned_cols=97 Identities=20% Similarity=0.431 Sum_probs=82.9
Q ss_pred eEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcC--C-cEEEEEECCC--ChhHHhhcCCccc
Q 032982 22 VMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYT--D-VQFIKIDVDW--LPEAAKAFDLIDV 96 (129)
Q Consensus 22 ~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~--~-v~~~~v~~~~--~~~~~~~~~v~~~ 96 (129)
+..+++ .+++..+ .++++++|.||++||++|+.+.|.+.++.+.++ + +.++.+|+++ ++.++++|++. +
T Consensus 2 ~~~l~~-~~~~~~~----~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~-~ 75 (104)
T cd02997 2 VVHLTD-EDFRKFL----KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVK-G 75 (104)
T ss_pred eEEech-HhHHHHH----hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCc-c
Confidence 455554 5666554 356699999999999999999999999998886 3 8899999998 89999999999 9
Q ss_pred ccEEEEEeCCeEEEEEeCC-CHHHHHHHH
Q 032982 97 LPTFVLVKRGKEIDRVVGA-KKDELQMKT 124 (129)
Q Consensus 97 ~Pt~~i~~~G~~~~~~~g~-~~~~l~~~i 124 (129)
+||++++++|+.+.+..|. +.+++.+|+
T Consensus 76 ~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 76 FPTFKYFENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred ccEEEEEeCCCeeEEeCCCCCHHHHHhhC
Confidence 9999999999988888888 889888764
No 39
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.86 E-value=2.5e-21 Score=117.05 Aligned_cols=90 Identities=26% Similarity=0.388 Sum_probs=78.5
Q ss_pred HHHHhcCCCeEEEEEEcCCChhHhhhhHHH---HHHHHHcC-CcEEEEEECCC----ChhHHhhcCCcccccEEEEEe--
Q 032982 35 YEASKQSDRLVVIYYTAAWCGPCKFIEPYV---KDFAAMYT-DVQFIKIDVDW----LPEAAKAFDLIDVLPTFVLVK-- 104 (129)
Q Consensus 35 ~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l---~~~~~~~~-~v~~~~v~~~~----~~~~~~~~~v~~~~Pt~~i~~-- 104 (129)
+.++..++++++|+||++||++|+.+.+.+ .++.+.+. ++.++.+|+++ .+.++++|++. ++||+++|+
T Consensus 4 ~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~-~~Pti~~~~~~ 82 (104)
T cd02953 4 LAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVF-GPPTYLFYGPG 82 (104)
T ss_pred HHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCC-CCCEEEEECCC
Confidence 444556899999999999999999999987 67888777 59999999987 57889999999 999999997
Q ss_pred CCeEEEEEeCC-CHHHHHHHHH
Q 032982 105 RGKEIDRVVGA-KKDELQMKTE 125 (129)
Q Consensus 105 ~G~~~~~~~g~-~~~~l~~~i~ 125 (129)
+|+.+.++.|. +.++|.++|+
T Consensus 83 ~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 83 GEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCcccccccCHHHHHHHhC
Confidence 79999999998 9999988763
No 40
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.86 E-value=1.2e-20 Score=113.20 Aligned_cols=88 Identities=22% Similarity=0.406 Sum_probs=80.3
Q ss_pred cCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC---cEEEEEECCCChhHHhhcCCcccccEEEEEeCCeEEEEEeCC-
Q 032982 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD---VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA- 115 (129)
Q Consensus 40 ~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~---v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~- 115 (129)
.++++++|+||++||+.|+.+.+.++++++.+.+ +.++.+|+++++.++++|++. ++|+++++++|+...++.|.
T Consensus 11 ~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~-~~P~~~~~~~~~~~~~~~g~~ 89 (102)
T TIGR01126 11 LSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVS-GFPTIKFFPKGKKPVDYEGGR 89 (102)
T ss_pred ccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCC-cCCEEEEecCCCcceeecCCC
Confidence 4789999999999999999999999999988874 999999999999999999999 99999999877766778888
Q ss_pred CHHHHHHHHHhhh
Q 032982 116 KKDELQMKTEKRR 128 (129)
Q Consensus 116 ~~~~l~~~i~~~~ 128 (129)
+.++|..||++++
T Consensus 90 ~~~~l~~~i~~~~ 102 (102)
T TIGR01126 90 DLEAIVEFVNEKS 102 (102)
T ss_pred CHHHHHHHHHhcC
Confidence 8999999998864
No 41
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.85 E-value=2e-20 Score=113.19 Aligned_cols=85 Identities=25% Similarity=0.415 Sum_probs=75.9
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHcC----CcEEEEEECCCChhHHhhcCCcccccEEEEEeCCeEEEEEeCC-
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYT----DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA- 115 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~----~v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~- 115 (129)
++++++|.||++||++|+.+.|.++++++.++ ++.++.+|+++.+.++++|+|. ++||+++|.+|. ..++.|.
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~-~~Pt~~l~~~~~-~~~~~G~~ 91 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVR-GYPTIKLLKGDL-AYNYRGPR 91 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCc-cccEEEEEcCCC-ceeecCCC
Confidence 57799999999999999999999999999873 2889999999999999999999 999999998774 4567787
Q ss_pred CHHHHHHHHHhh
Q 032982 116 KKDELQMKTEKR 127 (129)
Q Consensus 116 ~~~~l~~~i~~~ 127 (129)
+.+.|.+++++.
T Consensus 92 ~~~~l~~~~~~~ 103 (104)
T cd03000 92 TKDDIVEFANRV 103 (104)
T ss_pred CHHHHHHHHHhh
Confidence 899999999874
No 42
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.84 E-value=4.4e-20 Score=115.09 Aligned_cols=94 Identities=19% Similarity=0.315 Sum_probs=78.6
Q ss_pred HHHHHhcCC-CeEEEEEEcCCChhHhhhhHHHH---HHHHHcCC-cEEEEEECCCC-------------hhHHhhcCCcc
Q 032982 34 QYEASKQSD-RLVVIYYTAAWCGPCKFIEPYVK---DFAAMYTD-VQFIKIDVDWL-------------PEAAKAFDLID 95 (129)
Q Consensus 34 ~~~~~~~~~-k~~lv~f~~~~c~~C~~~~~~l~---~~~~~~~~-v~~~~v~~~~~-------------~~~~~~~~v~~ 95 (129)
.+..+..++ ++++|.||++||++|+.+.+.+. .+.+.+.+ +.++.+|+++. ..++.+|++.
T Consensus 5 ~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~- 83 (125)
T cd02951 5 DLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVR- 83 (125)
T ss_pred HHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCc-
Confidence 344555677 99999999999999999999874 56555544 88999999864 6889999999
Q ss_pred cccEEEEEe-C-CeEEEEEeCC-CHHHHHHHHHhhh
Q 032982 96 VLPTFVLVK-R-GKEIDRVVGA-KKDELQMKTEKRR 128 (129)
Q Consensus 96 ~~Pt~~i~~-~-G~~~~~~~g~-~~~~l~~~i~~~~ 128 (129)
++||++++. + |+++.++.|. +.+++.++|+.++
T Consensus 84 ~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~ 119 (125)
T cd02951 84 FTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQ 119 (125)
T ss_pred cccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHH
Confidence 999999996 4 6999999998 8899999998765
No 43
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.84 E-value=1.6e-19 Score=119.94 Aligned_cols=104 Identities=17% Similarity=0.301 Sum_probs=87.0
Q ss_pred cCCCceEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCccc
Q 032982 17 AKTPLVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDV 96 (129)
Q Consensus 17 ~~~~~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~ 96 (129)
+..+.+..++. ++|...+..+ ..+.+|||+||++||++|+.+.+.|++++++|++++|+.+|++.. ..+|++. .
T Consensus 79 ~~~G~v~eis~-~~f~~eV~~a-s~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~---~~~~~i~-~ 152 (192)
T cd02988 79 SKFGEVYEISK-PDYVREVTEA-SKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC---IPNYPDK-N 152 (192)
T ss_pred CCCCeEEEeCH-HHHHHHHHhc-CCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HhhCCCC-C
Confidence 45788999965 7777766543 235699999999999999999999999999999999999999853 5899999 9
Q ss_pred ccEEEEEeCCeEEEEEeCC--------CHHHHHHHHHh
Q 032982 97 LPTFVLVKRGKEIDRVVGA--------KKDELQMKTEK 126 (129)
Q Consensus 97 ~Pt~~i~~~G~~~~~~~g~--------~~~~l~~~i~~ 126 (129)
+||+++|++|+.+.++.|. +.+.|..++.+
T Consensus 153 lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 153 LPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred CCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 9999999999999988764 45677666643
No 44
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.83 E-value=2e-19 Score=111.66 Aligned_cols=97 Identities=18% Similarity=0.216 Sum_probs=76.6
Q ss_pred eEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCCh-----------hHHhh
Q 032982 22 VMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP-----------EAAKA 90 (129)
Q Consensus 22 ~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~-----------~~~~~ 90 (129)
...++. +++.+.+ .+++.++|+|+++|||+|+.+.|.|.++.++ .++.++.+|++.+. ++.++
T Consensus 8 ~~~it~-~~~~~~i----~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~ 81 (122)
T TIGR01295 8 LEVTTV-VRALEAL----DKKETATFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAFRSR 81 (122)
T ss_pred ceecCH-HHHHHHH----HcCCcEEEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHHHHH
Confidence 344433 5555544 4688899999999999999999999999998 46889999988543 44456
Q ss_pred cC----CcccccEEEEEeCCeEEEEEeCC--CHHHHHHHHH
Q 032982 91 FD----LIDVLPTFVLVKRGKEIDRVVGA--KKDELQMKTE 125 (129)
Q Consensus 91 ~~----v~~~~Pt~~i~~~G~~~~~~~g~--~~~~l~~~i~ 125 (129)
|+ +. ++||+++|++|+.+.++.|. +.++|..++.
T Consensus 82 ~~i~~~i~-~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 82 FGIPTSFM-GTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred cCCcccCC-CCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 55 55 69999999999999999994 7999988763
No 45
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.83 E-value=1.5e-19 Score=110.29 Aligned_cols=100 Identities=20% Similarity=0.342 Sum_probs=80.5
Q ss_pred eEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC--cEEEEEECCC-ChhHHh-hcCCcccc
Q 032982 22 VMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDW-LPEAAK-AFDLIDVL 97 (129)
Q Consensus 22 ~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~--v~~~~v~~~~-~~~~~~-~~~v~~~~ 97 (129)
+++++. ++++..+.. ...+++++|.||++||++|+.+.|.+.++++.+++ +.++.+|+++ ...+++ .|++. ++
T Consensus 3 v~~~~~-~~~~~~~~~-~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~-~~ 79 (109)
T cd02993 3 VVTLSR-AEIEALAKG-ERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLK-SF 79 (109)
T ss_pred ceeccH-HHHHHHHhh-hhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCC-cC
Confidence 556655 678876643 34689999999999999999999999999999874 8999999997 567776 59999 99
Q ss_pred cEEEEEeCC-eEEEEEeC-C-CHHHHHHHH
Q 032982 98 PTFVLVKRG-KEIDRVVG-A-KKDELQMKT 124 (129)
Q Consensus 98 Pt~~i~~~G-~~~~~~~g-~-~~~~l~~~i 124 (129)
||+++|.+| .....+.| . +.+.|.+||
T Consensus 80 Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 80 PTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 999999654 45556666 3 788887764
No 46
>PTZ00062 glutaredoxin; Provisional
Probab=99.83 E-value=1.6e-19 Score=120.48 Aligned_cols=91 Identities=10% Similarity=0.098 Sum_probs=80.3
Q ss_pred echhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCcccccEEEEEeC
Q 032982 26 QSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKR 105 (129)
Q Consensus 26 ~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~ 105 (129)
.+.+++.+.+. .+.+.++++||++||++|+.+.+.+.+++++++++.|+.||.+ |+|. ++||+++|++
T Consensus 4 ~~~ee~~~~i~---~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~V~-~vPtfv~~~~ 71 (204)
T PTZ00062 4 IKKEEKDKLIE---SNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DANN-EYGVFEFYQN 71 (204)
T ss_pred CCHHHHHHHHh---cCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cCcc-cceEEEEEEC
Confidence 34566666542 1347889999999999999999999999999999999999987 9999 9999999999
Q ss_pred CeEEEEEeCCCHHHHHHHHHhhh
Q 032982 106 GKEIDRVVGAKKDELQMKTEKRR 128 (129)
Q Consensus 106 G~~~~~~~g~~~~~l~~~i~~~~ 128 (129)
|+.++++.|.++.+|.+.+.++.
T Consensus 72 g~~i~r~~G~~~~~~~~~~~~~~ 94 (204)
T PTZ00062 72 SQLINSLEGCNTSTLVSFIRGWA 94 (204)
T ss_pred CEEEeeeeCCCHHHHHHHHHHHc
Confidence 99999999999999999988764
No 47
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.83 E-value=1.1e-19 Score=109.48 Aligned_cols=98 Identities=27% Similarity=0.490 Sum_probs=81.2
Q ss_pred eEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcC---CcEEEEEECCC-ChhHHhhcCCcccc
Q 032982 22 VMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYT---DVQFIKIDVDW-LPEAAKAFDLIDVL 97 (129)
Q Consensus 22 ~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~---~v~~~~v~~~~-~~~~~~~~~v~~~~ 97 (129)
+..+++ +++++.+ ...+++++|+||++||++|+.+.|.+.++.+.++ ++.++.+|.++ ++.++++|++. ++
T Consensus 2 ~~~l~~-~~~~~~~---~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~-~~ 76 (105)
T cd02998 2 VVELTD-SNFDKVV---GDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVS-GF 76 (105)
T ss_pred eEEcch-hcHHHHh---cCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCC-Cc
Confidence 345544 6666644 2356799999999999999999999999999986 39999999999 89999999999 99
Q ss_pred cEEEEEeCC-eEEEEEeCC-CHHHHHHHH
Q 032982 98 PTFVLVKRG-KEIDRVVGA-KKDELQMKT 124 (129)
Q Consensus 98 Pt~~i~~~G-~~~~~~~g~-~~~~l~~~i 124 (129)
|++++|.+| +....+.|. +.++|.+||
T Consensus 77 P~~~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 77 PTLKFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred CEEEEEeCCCCCccccCCccCHHHHHhhC
Confidence 999999766 566667787 888888774
No 48
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.83 E-value=1.4e-19 Score=109.01 Aligned_cols=97 Identities=22% Similarity=0.376 Sum_probs=80.7
Q ss_pred eEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC---cEEEEEECCCChhHHhhcCCccccc
Q 032982 22 VMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD---VQFIKIDVDWLPEAAKAFDLIDVLP 98 (129)
Q Consensus 22 ~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~---v~~~~v~~~~~~~~~~~~~v~~~~P 98 (129)
+..++. +++++.+. ..+++++|+||++||++|+.+.|.++++++.+++ +.++.+|.+++ +++..+++. ++|
T Consensus 2 v~~l~~-~~f~~~i~---~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~-~~P 75 (104)
T cd02995 2 VKVVVG-KNFDEVVL---DSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVD-GFP 75 (104)
T ss_pred eEEEch-hhhHHHHh---CCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCC-CCC
Confidence 455554 67776653 3568999999999999999999999999998865 89999999987 578899999 999
Q ss_pred EEEEEeCCe--EEEEEeCC-CHHHHHHHH
Q 032982 99 TFVLVKRGK--EIDRVVGA-KKDELQMKT 124 (129)
Q Consensus 99 t~~i~~~G~--~~~~~~g~-~~~~l~~~i 124 (129)
++++|.+|+ ...++.|. +.++|.+||
T Consensus 76 t~~~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 76 TILFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EEEEEcCCCcCCceEccCCcCHHHHHhhC
Confidence 999998887 55567787 888888775
No 49
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.83 E-value=4.1e-19 Score=104.00 Aligned_cols=86 Identities=47% Similarity=0.841 Sum_probs=78.5
Q ss_pred hcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCcccccEEEEEeCCeEEEEEeCC-CH
Q 032982 39 KQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KK 117 (129)
Q Consensus 39 ~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~-~~ 117 (129)
...+++++|+||++||++|+.+.+.++++.+..+++.|+.+|+++.+.++++|++. ++|+++++.+|+.+..+.|. +.
T Consensus 7 ~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~-~~P~~~~~~~g~~~~~~~g~~~~ 85 (93)
T cd02947 7 IKSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVR-SIPTFLFFKNGKEVDRVVGADPK 85 (93)
T ss_pred HhcCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcc-cccEEEEEECCEEEEEEecCCCH
Confidence 34558999999999999999999999999998667999999999999999999999 99999999999999999998 77
Q ss_pred HHHHHHHH
Q 032982 118 DELQMKTE 125 (129)
Q Consensus 118 ~~l~~~i~ 125 (129)
++|..+|+
T Consensus 86 ~~l~~~i~ 93 (93)
T cd02947 86 EELEEFLE 93 (93)
T ss_pred HHHHHHhC
Confidence 88888763
No 50
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.81 E-value=3.7e-19 Score=105.99 Aligned_cols=85 Identities=24% Similarity=0.384 Sum_probs=75.2
Q ss_pred hcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHc---CCcEEEEEECCCChhHHhhcCCcccccEEEEEeCC-eEEEEEeC
Q 032982 39 KQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMY---TDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRG-KEIDRVVG 114 (129)
Q Consensus 39 ~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~---~~v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G-~~~~~~~g 114 (129)
..++++++|+||++||++|+.+.+.+.++++.+ .++.|+.+|+++++.++++|+|. ++|+++++++| +...++.|
T Consensus 12 i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~-~~Pt~~~~~~~~~~~~~~~g 90 (101)
T cd02961 12 VKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVR-GYPTIKLFPNGSKEPVKYEG 90 (101)
T ss_pred HhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCC-CCCEEEEEcCCCcccccCCC
Confidence 345669999999999999999999999999888 34999999999999999999999 99999999876 77778888
Q ss_pred C-CHHHHHHHH
Q 032982 115 A-KKDELQMKT 124 (129)
Q Consensus 115 ~-~~~~l~~~i 124 (129)
. +.+++.+|+
T Consensus 91 ~~~~~~i~~~~ 101 (101)
T cd02961 91 PRTLESLVEFI 101 (101)
T ss_pred CcCHHHHHhhC
Confidence 7 888887764
No 51
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.78 E-value=3.4e-18 Score=129.58 Aligned_cols=110 Identities=20% Similarity=0.360 Sum_probs=95.4
Q ss_pred CCceEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHH---HHHHHHcCCcEEEEEECCCC----hhHHhhc
Q 032982 19 TPLVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYV---KDFAAMYTDVQFIKIDVDWL----PEAAKAF 91 (129)
Q Consensus 19 ~~~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l---~~~~~~~~~v~~~~v~~~~~----~~~~~~~ 91 (129)
...+..+.+.+++++.+..+..++|+++|.||++||++|+.+.+.. .++.++++++.++.+|++++ .++.++|
T Consensus 451 ~~~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~ 530 (571)
T PRK00293 451 HLNFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHY 530 (571)
T ss_pred CCCceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHc
Confidence 4467888899999999988777899999999999999999998875 67888887899999999854 5788999
Q ss_pred CCcccccEEEEEe-CCeEE--EEEeCC-CHHHHHHHHHhhhC
Q 032982 92 DLIDVLPTFVLVK-RGKEI--DRVVGA-KKDELQMKTEKRRN 129 (129)
Q Consensus 92 ~v~~~~Pt~~i~~-~G~~~--~~~~g~-~~~~l~~~i~~~~~ 129 (129)
++. ++||+++|+ +|+++ .++.|. +++++.+++++..+
T Consensus 531 ~v~-g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~~ 571 (571)
T PRK00293 531 NVL-GLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQP 571 (571)
T ss_pred CCC-CCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhcC
Confidence 999 999999995 88884 678898 99999999998753
No 52
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.78 E-value=5.1e-18 Score=104.47 Aligned_cols=99 Identities=18% Similarity=0.254 Sum_probs=79.0
Q ss_pred EeechhHHHHHHHHHhcCCCeEEEEEEc-------CCChhHhhhhHHHHHHHHHcC-CcEEEEEECCC-------ChhHH
Q 032982 24 ELQSKHQWRSQYEASKQSDRLVVIYYTA-------AWCGPCKFIEPYVKDFAAMYT-DVQFIKIDVDW-------LPEAA 88 (129)
Q Consensus 24 ~i~~~~~~~~~~~~~~~~~k~~lv~f~~-------~~c~~C~~~~~~l~~~~~~~~-~v~~~~v~~~~-------~~~~~ 88 (129)
.+.+.+++.+.+... ++++++|.||+ +||++|+.+.|.++++.++++ ++.|+.||+++ +.++.
T Consensus 5 ~~~~~~~f~~~i~~~--~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~ 82 (119)
T cd02952 5 AVRGYEEFLKLLKSH--EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFR 82 (119)
T ss_pred cccCHHHHHHHHHhc--CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhH
Confidence 456667777776542 57899999999 999999999999999999998 59999999976 45888
Q ss_pred hhcCCcccccEEEEEeCCeEEEEEeCCCHHHHHHHH
Q 032982 89 KAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKT 124 (129)
Q Consensus 89 ~~~~v~~~~Pt~~i~~~G~~~~~~~g~~~~~l~~~i 124 (129)
.+|+|..++||++++++|..+-.-...+.+.+..++
T Consensus 83 ~~~~I~~~iPT~~~~~~~~~l~~~~c~~~~~~~~~~ 118 (119)
T cd02952 83 TDPKLTTGVPTLLRWKTPQRLVEDECLQADLVEMFF 118 (119)
T ss_pred hccCcccCCCEEEEEcCCceecchhhcCHHHHHHhh
Confidence 999983289999999887655443334677776654
No 53
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.77 E-value=9.7e-18 Score=96.99 Aligned_cols=79 Identities=27% Similarity=0.424 Sum_probs=70.4
Q ss_pred EEEEEEcCCChhHhhhhHHHHHHHHHcCC-cEEEEEECCCChhHHhhcCCcccccEEEEEeCCeEEEEEeCC-CHHHHHH
Q 032982 45 VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQM 122 (129)
Q Consensus 45 ~lv~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~-~~~~l~~ 122 (129)
.+..||++||++|+.+.+.+++++++++. +.++.+|.+++++++++|++. ++||+++ +|+. +..|. +.+++.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~-~vPt~~~--~g~~--~~~G~~~~~~l~~ 76 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIM-AVPAIVI--NGDV--EFIGAPTKEELVE 76 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCc-cCCEEEE--CCEE--EEecCCCHHHHHH
Confidence 46789999999999999999999998865 999999999999999999999 9999876 7763 67788 8999999
Q ss_pred HHHhhh
Q 032982 123 KTEKRR 128 (129)
Q Consensus 123 ~i~~~~ 128 (129)
++++.+
T Consensus 77 ~l~~~~ 82 (82)
T TIGR00411 77 AIKKRL 82 (82)
T ss_pred HHHhhC
Confidence 998754
No 54
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.77 E-value=3.3e-18 Score=105.14 Aligned_cols=82 Identities=21% Similarity=0.328 Sum_probs=68.8
Q ss_pred ceEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcC---C-cEEEEEECC--CChhHHhhcCCc
Q 032982 21 LVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYT---D-VQFIKIDVD--WLPEAAKAFDLI 94 (129)
Q Consensus 21 ~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~---~-v~~~~v~~~--~~~~~~~~~~v~ 94 (129)
.+++++. +++++.+.. .+++++|.||++||++|+.+.|.++++++.++ + +.|+.+|++ ++..++++|++.
T Consensus 2 ~v~~l~~-~~f~~~i~~---~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~ 77 (114)
T cd02992 2 PVIVLDA-ASFNSALLG---SPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVT 77 (114)
T ss_pred CeEECCH-HhHHHHHhc---CCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCC
Confidence 4556654 778877643 46899999999999999999999999988764 3 889999965 467899999999
Q ss_pred ccccEEEEEeCCe
Q 032982 95 DVLPTFVLVKRGK 107 (129)
Q Consensus 95 ~~~Pt~~i~~~G~ 107 (129)
++||+++|++|.
T Consensus 78 -~~Pt~~lf~~~~ 89 (114)
T cd02992 78 -GYPTLRYFPPFS 89 (114)
T ss_pred -CCCEEEEECCCC
Confidence 999999998887
No 55
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.76 E-value=1.8e-17 Score=112.11 Aligned_cols=98 Identities=16% Similarity=0.281 Sum_probs=79.5
Q ss_pred hHHHHHHHHHhcCCCeEEEEEEc---CCChhHhhhhHHHHHHHHHcCCcE--EEEEECCCChhHHhhcCCcccccEEEEE
Q 032982 29 HQWRSQYEASKQSDRLVVIYYTA---AWCGPCKFIEPYVKDFAAMYTDVQ--FIKIDVDWLPEAAKAFDLIDVLPTFVLV 103 (129)
Q Consensus 29 ~~~~~~~~~~~~~~k~~lv~f~~---~~c~~C~~~~~~l~~~~~~~~~v~--~~~v~~~~~~~~~~~~~v~~~~Pt~~i~ 103 (129)
.++...+.+.. ++...++.|++ +||++|+.+.|.++++++.++++. ++.+|.+++++++++|+|. ++||+++|
T Consensus 7 ~~~~~~~~~~~-~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~-~~Pt~~~f 84 (215)
T TIGR02187 7 EILKELFLKEL-KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVE-RVPTTIIL 84 (215)
T ss_pred HHHHHHHHHhc-CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCC-ccCEEEEE
Confidence 34445433323 45555767887 999999999999999999997754 5666666999999999999 99999999
Q ss_pred eCCeEEE-EEeCC-CHHHHHHHHHhhh
Q 032982 104 KRGKEID-RVVGA-KKDELQMKTEKRR 128 (129)
Q Consensus 104 ~~G~~~~-~~~g~-~~~~l~~~i~~~~ 128 (129)
++|+... ++.|. +.+++.++|+.++
T Consensus 85 ~~g~~~~~~~~G~~~~~~l~~~i~~~~ 111 (215)
T TIGR02187 85 EEGKDGGIRYTGIPAGYEFAALIEDIV 111 (215)
T ss_pred eCCeeeEEEEeecCCHHHHHHHHHHHH
Confidence 9999875 88898 8899999998765
No 56
>PLN02309 5'-adenylylsulfate reductase
Probab=99.76 E-value=2.5e-17 Score=121.24 Aligned_cols=107 Identities=19% Similarity=0.241 Sum_probs=87.7
Q ss_pred CCCceEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC--cEEEEEECC-CChhHHh-hcCC
Q 032982 18 KTPLVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVD-WLPEAAK-AFDL 93 (129)
Q Consensus 18 ~~~~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~--v~~~~v~~~-~~~~~~~-~~~v 93 (129)
....++.++. +++++.+.. ...++++||.||++||++|+.+.|.|+++++++.+ +.|+.+|++ .+..+++ +|+|
T Consensus 343 ~~~~Vv~Lt~-~nfe~ll~~-~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I 420 (457)
T PLN02309 343 NSQNVVALSR-AGIENLLKL-ENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQL 420 (457)
T ss_pred CCCCcEECCH-HHHHHHHHh-hcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCC
Confidence 3457777766 788887654 34799999999999999999999999999999864 999999999 7778886 6999
Q ss_pred cccccEEEEEeCCeEE-EEEe-CC-CHHHHHHHHHhh
Q 032982 94 IDVLPTFVLVKRGKEI-DRVV-GA-KKDELQMKTEKR 127 (129)
Q Consensus 94 ~~~~Pt~~i~~~G~~~-~~~~-g~-~~~~l~~~i~~~ 127 (129)
. ++||+++|++|... -.+. +. +.+.|.+||+++
T Consensus 421 ~-~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 421 G-SFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred c-eeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 9 99999999876532 2343 34 899999999875
No 57
>PTZ00102 disulphide isomerase; Provisional
Probab=99.75 E-value=1.8e-17 Score=123.33 Aligned_cols=105 Identities=22% Similarity=0.368 Sum_probs=89.3
Q ss_pred CCceEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC---cEEEEEECCCChhHHhhcCCcc
Q 032982 19 TPLVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD---VQFIKIDVDWLPEAAKAFDLID 95 (129)
Q Consensus 19 ~~~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~---v~~~~v~~~~~~~~~~~~~v~~ 95 (129)
...+..+.. +++++.+ ..++++++|.||++||++|+.+.|.++++++.+++ +.++.+|.+++...+++|++.
T Consensus 356 ~~~v~~l~~-~~f~~~v---~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~- 430 (477)
T PTZ00102 356 DGPVKVVVG-NTFEEIV---FKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWS- 430 (477)
T ss_pred CCCeEEecc-cchHHHH---hcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCc-
Confidence 445666654 7777765 34689999999999999999999999999988763 889999999999999999999
Q ss_pred cccEEEEEeCCeEE-EEEeCC-CHHHHHHHHHhhh
Q 032982 96 VLPTFVLVKRGKEI-DRVVGA-KKDELQMKTEKRR 128 (129)
Q Consensus 96 ~~Pt~~i~~~G~~~-~~~~g~-~~~~l~~~i~~~~ 128 (129)
++||+++|++|..+ .++.|. +.+.+.++|+++.
T Consensus 431 ~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~ 465 (477)
T PTZ00102 431 AFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHA 465 (477)
T ss_pred ccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcC
Confidence 99999999876544 478888 9999999998865
No 58
>PTZ00102 disulphide isomerase; Provisional
Probab=99.75 E-value=2.5e-17 Score=122.55 Aligned_cols=102 Identities=23% Similarity=0.403 Sum_probs=87.3
Q ss_pred CceEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcC----CcEEEEEECCCChhHHhhcCCcc
Q 032982 20 PLVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYT----DVQFIKIDVDWLPEAAKAFDLID 95 (129)
Q Consensus 20 ~~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~----~v~~~~v~~~~~~~~~~~~~v~~ 95 (129)
..+..++. ++++..+ .+++.++|.||++||++|+.+.|.+.++++.+. ++.|+.+|++++..++++|+|.
T Consensus 32 ~~v~~l~~-~~f~~~i----~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~- 105 (477)
T PTZ00102 32 EHVTVLTD-STFDKFI----TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVR- 105 (477)
T ss_pred CCcEEcch-hhHHHHH----hcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCC-
Confidence 45666655 6666644 357899999999999999999999998876653 3999999999999999999999
Q ss_pred cccEEEEEeCCeEEEEEeCC-CHHHHHHHHHhhh
Q 032982 96 VLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKRR 128 (129)
Q Consensus 96 ~~Pt~~i~~~G~~~~~~~g~-~~~~l~~~i~~~~ 128 (129)
++||+++|++|+.+ ++.|. +.+.|.+|+++++
T Consensus 106 ~~Pt~~~~~~g~~~-~y~g~~~~~~l~~~l~~~~ 138 (477)
T PTZ00102 106 GYPTIKFFNKGNPV-NYSGGRTADGIVSWIKKLT 138 (477)
T ss_pred cccEEEEEECCceE-EecCCCCHHHHHHHHHHhh
Confidence 99999999999877 77887 9999999998875
No 59
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.75 E-value=3.2e-17 Score=120.81 Aligned_cols=107 Identities=17% Similarity=0.208 Sum_probs=86.9
Q ss_pred CCCceEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC--cEEEEEECCCCh-hHH-hhcCC
Q 032982 18 KTPLVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWLP-EAA-KAFDL 93 (129)
Q Consensus 18 ~~~~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~--v~~~~v~~~~~~-~~~-~~~~v 93 (129)
....++.++. +++++.+.. ...++++||.||++||++|+.+.|.|+++++++.+ +.|+.+|+|.+. .++ ++|+|
T Consensus 349 ~~~~Vv~L~~-~nf~~~v~~-~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I 426 (463)
T TIGR00424 349 DSNNVVSLSR-PGIENLLKL-EERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQL 426 (463)
T ss_pred CCCCeEECCH-HHHHHHHhh-hcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCC
Confidence 4557888877 688887753 34789999999999999999999999999999864 899999999753 444 78999
Q ss_pred cccccEEEEEeCCeE-EEEEe-CC-CHHHHHHHHHhh
Q 032982 94 IDVLPTFVLVKRGKE-IDRVV-GA-KKDELQMKTEKR 127 (129)
Q Consensus 94 ~~~~Pt~~i~~~G~~-~~~~~-g~-~~~~l~~~i~~~ 127 (129)
. ++||+++|++|.. ...+. |. +.+.|..||+.+
T Consensus 427 ~-~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 427 G-SFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred C-ccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 9 9999999988853 22343 45 899999998764
No 60
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.75 E-value=3e-17 Score=121.39 Aligned_cols=101 Identities=21% Similarity=0.441 Sum_probs=86.5
Q ss_pred eEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcC----CcEEEEEECCCChhHHhhcCCcccc
Q 032982 22 VMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYT----DVQFIKIDVDWLPEAAKAFDLIDVL 97 (129)
Q Consensus 22 ~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~----~v~~~~v~~~~~~~~~~~~~v~~~~ 97 (129)
+..++. ++++..+ .++++++|.||++||++|+.+.|.+.++++.+. ++.|+.+|++++.+++++|+|. ++
T Consensus 3 v~~l~~-~~~~~~i----~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~-~~ 76 (462)
T TIGR01130 3 VLVLTK-DNFDDFI----KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVS-GY 76 (462)
T ss_pred ceECCH-HHHHHHH----hcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCc-cc
Confidence 455544 6666654 367899999999999999999999998877654 3899999999999999999999 99
Q ss_pred cEEEEEeCCeE-EEEEeCC-CHHHHHHHHHhhh
Q 032982 98 PTFVLVKRGKE-IDRVVGA-KKDELQMKTEKRR 128 (129)
Q Consensus 98 Pt~~i~~~G~~-~~~~~g~-~~~~l~~~i~~~~ 128 (129)
||+++|++|+. +..+.|. +.+.|.+|+.+.+
T Consensus 77 Pt~~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~ 109 (462)
T TIGR01130 77 PTLKIFRNGEDSVSDYNGPRDADGIVKYMKKQS 109 (462)
T ss_pred cEEEEEeCCccceeEecCCCCHHHHHHHHHHhc
Confidence 99999999987 6778888 9999999998764
No 61
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.75 E-value=3.8e-18 Score=105.27 Aligned_cols=95 Identities=14% Similarity=0.341 Sum_probs=71.9
Q ss_pred HHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcC-CcEEEEEECCCCh-hHHhhcCCccc--ccEEEEEe-
Q 032982 30 QWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYT-DVQFIKIDVDWLP-EAAKAFDLIDV--LPTFVLVK- 104 (129)
Q Consensus 30 ~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~-~v~~~~v~~~~~~-~~~~~~~v~~~--~Pt~~i~~- 104 (129)
++++.+..+..++++++|.||++||++|+.+.|.+.+...... +.+|+.++++..+ ...++|++. + +||++++.
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~-g~~vPt~~f~~~ 85 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPD-GGYIPRILFLDP 85 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccC-CCccceEEEECC
Confidence 4667777777899999999999999999999999988766543 3677778887654 456789998 5 99999995
Q ss_pred CCeEEEEE---eCC-CHHHHHHHHH
Q 032982 105 RGKEIDRV---VGA-KKDELQMKTE 125 (129)
Q Consensus 105 ~G~~~~~~---~g~-~~~~l~~~i~ 125 (129)
+|+++.++ .|. +.+.+.+.++
T Consensus 86 ~Gk~~~~~~~~~~~~~~~~f~~~~~ 110 (117)
T cd02959 86 SGDVHPEIINKKGNPNYKYFYSSAA 110 (117)
T ss_pred CCCCchhhccCCCCccccccCCCHH
Confidence 99987754 344 3444444433
No 62
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.4e-17 Score=122.40 Aligned_cols=104 Identities=20% Similarity=0.420 Sum_probs=90.2
Q ss_pred CCceEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC----cEEEEEECCCChhHHhhcCCc
Q 032982 19 TPLVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD----VQFIKIDVDWLPEAAKAFDLI 94 (129)
Q Consensus 19 ~~~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~----v~~~~v~~~~~~~~~~~~~v~ 94 (129)
...+..+++ +++... +..+..++|.||||||++|+.+.|.+++.+..+.. +.++.||.+++..++.+|+|.
T Consensus 24 ~~~Vl~Lt~-dnf~~~----i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~ 98 (493)
T KOG0190|consen 24 EEDVLVLTK-DNFKET----INGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVR 98 (493)
T ss_pred ccceEEEec-ccHHHH----hccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCC
Confidence 556777766 666654 45788999999999999999999999998877653 999999999999999999999
Q ss_pred ccccEEEEEeCCeEEEEEeCC-CHHHHHHHHHhhh
Q 032982 95 DVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKRR 128 (129)
Q Consensus 95 ~~~Pt~~i~~~G~~~~~~~g~-~~~~l~~~i~~~~ 128 (129)
++||+.+|+||.....+.|. +.+.+..|+.+..
T Consensus 99 -gyPTlkiFrnG~~~~~Y~G~r~adgIv~wl~kq~ 132 (493)
T KOG0190|consen 99 -GYPTLKIFRNGRSAQDYNGPREADGIVKWLKKQS 132 (493)
T ss_pred -CCCeEEEEecCCcceeccCcccHHHHHHHHHhcc
Confidence 99999999999986667788 9999999998754
No 63
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.71 E-value=4.5e-17 Score=99.46 Aligned_cols=84 Identities=27% Similarity=0.441 Sum_probs=65.9
Q ss_pred cCCCeEEEEEEcCCChhHhhhhHHHHH---HHHHcC-CcEEEEEECCCC--------------------hhHHhhcCCcc
Q 032982 40 QSDRLVVIYYTAAWCGPCKFIEPYVKD---FAAMYT-DVQFIKIDVDWL--------------------PEAAKAFDLID 95 (129)
Q Consensus 40 ~~~k~~lv~f~~~~c~~C~~~~~~l~~---~~~~~~-~v~~~~v~~~~~--------------------~~~~~~~~v~~ 95 (129)
.++++++++||++||++|+.+.+.+.+ +.+.+. ++.++.++++.. .+++++|||.
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~- 81 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVN- 81 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT---
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCC-
Confidence 478999999999999999999999985 444444 388888888743 3588999999
Q ss_pred cccEEEEEe-CCeEEEEEeCC-CHHHHHHHH
Q 032982 96 VLPTFVLVK-RGKEIDRVVGA-KKDELQMKT 124 (129)
Q Consensus 96 ~~Pt~~i~~-~G~~~~~~~g~-~~~~l~~~i 124 (129)
++||+++++ +|+++.++.|+ ++++|.+++
T Consensus 82 gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 82 GTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred ccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 999999995 89999999999 999998765
No 64
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.71 E-value=3.3e-16 Score=103.77 Aligned_cols=85 Identities=14% Similarity=0.245 Sum_probs=70.2
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCCh-----------------------hHHhhcCCcccc
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP-----------------------EAAKAFDLIDVL 97 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~-----------------------~~~~~~~v~~~~ 97 (129)
.+|+++|+||++||++|+.+.|.+.++.+. ++.++.++.++.+ .+++.|++. ++
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-~~ 143 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVY-GA 143 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCC-cC
Confidence 689999999999999999999999998753 6888888875432 244578999 99
Q ss_pred cEEEEE-eCCeEEEEEeCC-CHHHHHHHHHhhh
Q 032982 98 PTFVLV-KRGKEIDRVVGA-KKDELQMKTEKRR 128 (129)
Q Consensus 98 Pt~~i~-~~G~~~~~~~g~-~~~~l~~~i~~~~ 128 (129)
|+.+++ ++|++..++.|. +.++++++|+.++
T Consensus 144 P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~ 176 (185)
T PRK15412 144 PETFLIDGNGIIRYRHAGDLNPRVWESEIKPLW 176 (185)
T ss_pred CeEEEECCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 965555 799999999998 8999988888765
No 65
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.70 E-value=1e-16 Score=96.42 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=77.9
Q ss_pred CCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC-cEEEEEECCCChhHHhhcCCc-ccccEEEEEeC--CeEEEEEeCC-C
Q 032982 42 DRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLI-DVLPTFVLVKR--GKEIDRVVGA-K 116 (129)
Q Consensus 42 ~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~~~~~~~~~~v~-~~~Pt~~i~~~--G~~~~~~~g~-~ 116 (129)
++++++.|+++||++|..+.+.++++++++++ +.|+.+|.++++.+++.||+. .++|+++++++ |+......+. +
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~ 91 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT 91 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence 78999999999999999999999999999987 999999999999999999996 37999999987 7666555666 8
Q ss_pred HHHHHHHHHhhh
Q 032982 117 KDELQMKTEKRR 128 (129)
Q Consensus 117 ~~~l~~~i~~~~ 128 (129)
.+.|.+|+++++
T Consensus 92 ~~~l~~fi~~~~ 103 (103)
T cd02982 92 AESLEEFVEDFL 103 (103)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 66
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.70 E-value=5.1e-16 Score=105.08 Aligned_cols=82 Identities=17% Similarity=0.297 Sum_probs=72.8
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCcccccEEEEEeCCeEEEEEeCC-CHHH
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDE 119 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~-~~~~ 119 (129)
.+.+.++.||++||++|..+.+.+++++.+.+++.+..+|.+++++++++|+|. ++||++++++|+. +.|. +.++
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~-~vPtl~i~~~~~~---~~G~~~~~~ 207 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVM-SVPKIVINKGVEE---FVGAYPEEQ 207 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCc-cCCEEEEecCCEE---EECCCCHHH
Confidence 344566669999999999999999999999877999999999999999999999 9999999988864 7788 8899
Q ss_pred HHHHHHh
Q 032982 120 LQMKTEK 126 (129)
Q Consensus 120 l~~~i~~ 126 (129)
|.+++.+
T Consensus 208 l~~~l~~ 214 (215)
T TIGR02187 208 FLEYILS 214 (215)
T ss_pred HHHHHHh
Confidence 9998875
No 67
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.68 E-value=9.3e-16 Score=100.60 Aligned_cols=87 Identities=18% Similarity=0.315 Sum_probs=70.9
Q ss_pred cCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECC-----------------------CChhHHhhcCCccc
Q 032982 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD-----------------------WLPEAAKAFDLIDV 96 (129)
Q Consensus 40 ~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~-----------------------~~~~~~~~~~v~~~ 96 (129)
..+++++|+||++||++|+.+.|.++++.+. ++.++.++.+ ....+.++|++. +
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~-~ 137 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVY-G 137 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCe-e
Confidence 3689999999999999999999999998764 5777777653 233456788999 9
Q ss_pred ccEEEEE-eCCeEEEEEeCC-CHHHHHHHHHhhhC
Q 032982 97 LPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKRRN 129 (129)
Q Consensus 97 ~Pt~~i~-~~G~~~~~~~g~-~~~~l~~~i~~~~~ 129 (129)
+|+.+++ ++|+++.++.|. +.+++.++++++++
T Consensus 138 ~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 138 APETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred CCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 9965555 799999999998 99999999988763
No 68
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.68 E-value=1.3e-15 Score=97.92 Aligned_cols=86 Identities=21% Similarity=0.406 Sum_probs=67.0
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCC------------hhHH-hhc---CCcccccEEEEE-
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL------------PEAA-KAF---DLIDVLPTFVLV- 103 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~------------~~~~-~~~---~v~~~~Pt~~i~- 103 (129)
.++..+|+||++||++|+.+.|.++++++++ ++.++.++++.. .... ..| ++. ++||.+++
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~-~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~-~iPTt~LID 126 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQF-GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPV-VTPATFLVN 126 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHc-CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCC-CCCeEEEEe
Confidence 4566799999999999999999999999998 566766666642 2222 345 788 99987777
Q ss_pred eCCe-EEEEEeCC-CHHHHHHHHHhhh
Q 032982 104 KRGK-EIDRVVGA-KKDELQMKTEKRR 128 (129)
Q Consensus 104 ~~G~-~~~~~~g~-~~~~l~~~i~~~~ 128 (129)
++|+ +.....|. +.+++.+.|++++
T Consensus 127 ~~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 127 VNTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred CCCCEEEEEeecccCHHHHHHHHHHhC
Confidence 4666 45578898 9999999988764
No 69
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.67 E-value=1.1e-15 Score=113.98 Aligned_cols=85 Identities=19% Similarity=0.323 Sum_probs=73.2
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHcC--CcEEEEEE----------------------------CCCChhHHhh
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKID----------------------------VDWLPEAAKA 90 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~--~v~~~~v~----------------------------~~~~~~~~~~ 90 (129)
++|+++|.||++||++|+.+.|.|+++.++++ ++.|+.|. +|.+..+++.
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~ 134 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQS 134 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHH
Confidence 78999999999999999999999999999886 46666553 3445678899
Q ss_pred cCCcccccEEEEE-eCCeEEEEEeCC-CHHHHHHHHHh
Q 032982 91 FDLIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEK 126 (129)
Q Consensus 91 ~~v~~~~Pt~~i~-~~G~~~~~~~g~-~~~~l~~~i~~ 126 (129)
|+|. ++|+++++ ++|+++.++.|. +.++|.++|+.
T Consensus 135 fgV~-giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 135 LNIS-VYPSWAIIGKDGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred cCCC-CcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 9999 99998555 799999999998 99999999884
No 70
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.67 E-value=1e-15 Score=95.44 Aligned_cols=80 Identities=19% Similarity=0.283 Sum_probs=65.0
Q ss_pred hcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEEC-----------------------CCChhHHhhcCCcc
Q 032982 39 KQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDV-----------------------DWLPEAAKAFDLID 95 (129)
Q Consensus 39 ~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~-----------------------~~~~~~~~~~~v~~ 95 (129)
...+++++|+||++||++|+.+.|.++++.+++ ++.++.++. |....+++.|++.
T Consensus 22 ~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~- 99 (127)
T cd03010 22 DLKGKPYLLNVWASWCAPCREEHPVLMALARQG-RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVY- 99 (127)
T ss_pred HcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCC-
Confidence 346899999999999999999999999999886 477776664 3445677889999
Q ss_pred cccEEEEE-eCCeEEEEEeCC-CHHHH
Q 032982 96 VLPTFVLV-KRGKEIDRVVGA-KKDEL 120 (129)
Q Consensus 96 ~~Pt~~i~-~~G~~~~~~~g~-~~~~l 120 (129)
++|+.+++ ++|+++.+..|. +++.|
T Consensus 100 ~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 100 GVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CCCeEEEECCCceEEEEEeccCChHhc
Confidence 99965555 799999999998 76654
No 71
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.66 E-value=4.6e-15 Score=103.44 Aligned_cols=85 Identities=16% Similarity=0.313 Sum_probs=70.5
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCC-----------ChhHHhhcCCcccccEEEEEeC-CeE
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW-----------LPEAAKAFDLIDVLPTFVLVKR-GKE 108 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~-----------~~~~~~~~~v~~~~Pt~~i~~~-G~~ 108 (129)
.++++||+||++||++|+.+.|.|.++++++ ++.++.|++|. +..++++|||. ++|+++++++ |+.
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y-g~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~-~vPtl~Lv~~~~~~ 242 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRY-GIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIR-TVPAVFLADPDPNQ 242 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHc-CcEEEEEeCCCCccccCCcccCCHHHHHHcCCC-cCCeEEEEECCCCE
Confidence 6889999999999999999999999999998 57777777764 35688999999 9999999864 544
Q ss_pred E-EEEeCC-CHHHHHHHHHhh
Q 032982 109 I-DRVVGA-KKDELQMKTEKR 127 (129)
Q Consensus 109 ~-~~~~g~-~~~~l~~~i~~~ 127 (129)
+ ....|. +.++|.+.|...
T Consensus 243 v~~v~~G~~s~~eL~~~i~~~ 263 (271)
T TIGR02740 243 FTPIGFGVMSADELVDRILLA 263 (271)
T ss_pred EEEEEeCCCCHHHHHHHHHHH
Confidence 4 455687 999998887654
No 72
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.66 E-value=1.9e-15 Score=93.85 Aligned_cols=81 Identities=19% Similarity=0.193 Sum_probs=64.6
Q ss_pred HHHHHhcCCCeEEEEEEcCCChhHhhhhHHH---HHHHHHc-CCcEEEEEECCCChhHHh--------hcCCcccccEEE
Q 032982 34 QYEASKQSDRLVVIYYTAAWCGPCKFIEPYV---KDFAAMY-TDVQFIKIDVDWLPEAAK--------AFDLIDVLPTFV 101 (129)
Q Consensus 34 ~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l---~~~~~~~-~~v~~~~v~~~~~~~~~~--------~~~v~~~~Pt~~ 101 (129)
.+..+..++|+++|.|+++||++|+.|.+.. .++.+.+ +++.++.+|.++.+++.+ .|++. ++|+++
T Consensus 7 al~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~-G~Pt~v 85 (124)
T cd02955 7 AFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQG-GWPLNV 85 (124)
T ss_pred HHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCC-CCCEEE
Confidence 3455667899999999999999999998743 4566654 458999999998887765 35889 999999
Q ss_pred EE-eCCeEEEEEeCC
Q 032982 102 LV-KRGKEIDRVVGA 115 (129)
Q Consensus 102 i~-~~G~~~~~~~g~ 115 (129)
++ .+|+++....+.
T Consensus 86 fl~~~G~~~~~~~~~ 100 (124)
T cd02955 86 FLTPDLKPFFGGTYF 100 (124)
T ss_pred EECCCCCEEeeeeec
Confidence 99 589998766544
No 73
>PHA02125 thioredoxin-like protein
Probab=99.66 E-value=2.2e-15 Score=85.99 Aligned_cols=70 Identities=27% Similarity=0.585 Sum_probs=59.4
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCcccccEEEEEeCCeEEEEEeCC--CHHHHHHH
Q 032982 46 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA--KKDELQMK 123 (129)
Q Consensus 46 lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~--~~~~l~~~ 123 (129)
+++||++||++|+.+.|.|+++. +.++.+|.+++++++++|+|. ++||++ +|+.+.++.|. +..+|.+.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~~~l~~~~~v~-~~PT~~---~g~~~~~~~G~~~~~~~l~~~ 72 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDEGVELTAKHHIR-SLPTLV---NTSTLDRFTGVPRNVAELKEK 72 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCCCHHHHHHcCCc-eeCeEE---CCEEEEEEeCCCCcHHHHHHH
Confidence 68999999999999999997652 568899999999999999999 999987 78888888887 34666554
Q ss_pred H
Q 032982 124 T 124 (129)
Q Consensus 124 i 124 (129)
+
T Consensus 73 ~ 73 (75)
T PHA02125 73 L 73 (75)
T ss_pred h
Confidence 3
No 74
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.65 E-value=2.1e-15 Score=92.27 Aligned_cols=98 Identities=11% Similarity=0.165 Sum_probs=74.1
Q ss_pred eEEeechhHHHHHHHHHhcCCCeEEEEEEc--CCCh---hHhhhhHHHHHHHHHcCCcEEEEEEC-----CCChhHHhhc
Q 032982 22 VMELQSKHQWRSQYEASKQSDRLVVIYYTA--AWCG---PCKFIEPYVKDFAAMYTDVQFIKIDV-----DWLPEAAKAF 91 (129)
Q Consensus 22 ~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~--~~c~---~C~~~~~~l~~~~~~~~~v~~~~v~~-----~~~~~~~~~~ 91 (129)
++.+++ ++|++.+ .+++.+||.||+ |||+ +|..+.|.+.+.+. .+.++.||+ .++.+++++|
T Consensus 3 ~v~L~~-~nF~~~v----~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~---~v~lakVd~~d~~~~~~~~L~~~y 74 (116)
T cd03007 3 CVDLDT-VTFYKVI----PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD---DLLVAEVGIKDYGEKLNMELGERY 74 (116)
T ss_pred eeECCh-hhHHHHH----hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC---ceEEEEEecccccchhhHHHHHHh
Confidence 455655 6666654 468899999999 8888 77777666655442 388999999 4578899999
Q ss_pred CCc-ccccEEEEEeCCe--EEEEEeC--CCHHHHHHHHHhh
Q 032982 92 DLI-DVLPTFVLVKRGK--EIDRVVG--AKKDELQMKTEKR 127 (129)
Q Consensus 92 ~v~-~~~Pt~~i~~~G~--~~~~~~g--~~~~~l~~~i~~~ 127 (129)
+|. +++||+.+|++|. ....+.| .+.+.|.+||.+.
T Consensus 75 ~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 75 KLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 996 3799999999885 2234556 3899999999764
No 75
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.64 E-value=5.3e-15 Score=86.99 Aligned_cols=76 Identities=14% Similarity=0.279 Sum_probs=67.1
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCcccccEEEEEeCCeEEEEEeCC-CHHH
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDE 119 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~-~~~~ 119 (129)
.+++.+..|+++||++|....+.++++.+.++++.+..+|+++.++++++|+|. ++|++++ +|+.... |. +.++
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~-~vPt~vi--dG~~~~~--G~~~~~e 85 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIM-SVPAIFL--NGELFGF--GRMTLEE 85 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCc-cCCEEEE--CCEEEEe--CCCCHHH
Confidence 677889999999999999999999999999989999999999999999999999 9999975 7877664 65 6565
Q ss_pred HH
Q 032982 120 LQ 121 (129)
Q Consensus 120 l~ 121 (129)
+.
T Consensus 86 ~~ 87 (89)
T cd03026 86 IL 87 (89)
T ss_pred Hh
Confidence 53
No 76
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.64 E-value=6.9e-16 Score=106.92 Aligned_cols=96 Identities=23% Similarity=0.449 Sum_probs=81.6
Q ss_pred HHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC----cEEEEEECCCChhHHhhcCCcccccEEEEEeC
Q 032982 30 QWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD----VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKR 105 (129)
Q Consensus 30 ~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~----v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~ 105 (129)
+++..+.. ...+..++|.||+|||.+|+.+.|+|.++..++++ +++..+|++..+.++.+|||. ++||+.++++
T Consensus 32 DLddkFkd-nkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiq-GYPTIk~~kg 109 (468)
T KOG4277|consen 32 DLDDKFKD-NKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQ-GYPTIKFFKG 109 (468)
T ss_pred hhhHHhhh-cccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccC-CCceEEEecC
Confidence 33444433 45788999999999999999999999999888764 999999999999999999999 9999999999
Q ss_pred CeEEEEEeCCCHHHHHHHHHhh
Q 032982 106 GKEIDRVVGAKKDELQMKTEKR 127 (129)
Q Consensus 106 G~~~~~~~g~~~~~l~~~i~~~ 127 (129)
|..++..-|.+.+.+.++-.+.
T Consensus 110 d~a~dYRG~R~Kd~iieFAhR~ 131 (468)
T KOG4277|consen 110 DHAIDYRGGREKDAIIEFAHRC 131 (468)
T ss_pred CeeeecCCCccHHHHHHHHHhc
Confidence 9988876555888888876553
No 77
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.63 E-value=1e-14 Score=89.55 Aligned_cols=99 Identities=9% Similarity=0.178 Sum_probs=81.7
Q ss_pred hHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHH---HHHHHHcCC-cEEEEEECC--CChhHHhhcCCcccccEEEE
Q 032982 29 HQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYV---KDFAAMYTD-VQFIKIDVD--WLPEAAKAFDLIDVLPTFVL 102 (129)
Q Consensus 29 ~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l---~~~~~~~~~-v~~~~v~~~--~~~~~~~~~~v~~~~Pt~~i 102 (129)
.++++.+..+..++|+++|+|+++||++|+.+.... .++.+.+.+ ..++.+|++ +...+++.|++. ++|++++
T Consensus 4 gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~-~~P~~~~ 82 (114)
T cd02958 4 GSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVD-KYPHIAI 82 (114)
T ss_pred CCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCcc-CCCeEEE
Confidence 356677778888999999999999999999998754 556666643 777788887 456788999999 9999888
Q ss_pred Ee--CCeEEEEEeCC-CHHHHHHHHHhhh
Q 032982 103 VK--RGKEIDRVVGA-KKDELQMKTEKRR 128 (129)
Q Consensus 103 ~~--~G~~~~~~~g~-~~~~l~~~i~~~~ 128 (129)
+. +|+++.+..|. ++++|.+.+++..
T Consensus 83 i~~~~g~~l~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 83 IDPRTGEVLKVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred EeCccCcEeEEEcCCCCHHHHHHHHHHHH
Confidence 84 79999999999 9999998887753
No 78
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.62 E-value=5.6e-15 Score=109.33 Aligned_cols=103 Identities=23% Similarity=0.375 Sum_probs=84.0
Q ss_pred CCceEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC----cEEEEEECCCChhHHhhcCCc
Q 032982 19 TPLVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD----VQFIKIDVDWLPEAAKAFDLI 94 (129)
Q Consensus 19 ~~~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~----v~~~~v~~~~~~~~~~~~~v~ 94 (129)
...+..+.. .++.+.+. ..+++++|.||++||++|+.+.|.++++++.+.+ +.|+.+|++.+.. .. +++.
T Consensus 345 ~~~v~~l~~-~~f~~~v~---~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~-~~-~~i~ 418 (462)
T TIGR01130 345 EGPVKVLVG-KNFDEIVL---DETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDV-PP-FEVE 418 (462)
T ss_pred CCccEEeeC-cCHHHHhc---cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCcc-CC-CCcc
Confidence 445666655 77777653 3689999999999999999999999999999874 8899999997643 44 9999
Q ss_pred ccccEEEEEeCCeEE--EEEeCC-CHHHHHHHHHhhh
Q 032982 95 DVLPTFVLVKRGKEI--DRVVGA-KKDELQMKTEKRR 128 (129)
Q Consensus 95 ~~~Pt~~i~~~G~~~--~~~~g~-~~~~l~~~i~~~~ 128 (129)
++||+++|++|... .++.|. +.+.+.+||+++.
T Consensus 419 -~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~ 454 (462)
T TIGR01130 419 -GFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHA 454 (462)
T ss_pred -ccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcC
Confidence 99999999877652 456676 9999999998764
No 79
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.62 E-value=1.4e-14 Score=94.66 Aligned_cols=86 Identities=28% Similarity=0.553 Sum_probs=74.7
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC--cEEEEEECCC----------------------ChhHHhhcCCccc
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDW----------------------LPEAAKAFDLIDV 96 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~--v~~~~v~~~~----------------------~~~~~~~~~v~~~ 96 (129)
++++++|+||++||++|+...+.+.++.+++++ +.++.++.+. +..+.++|++. .
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~-~ 138 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVG-P 138 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCC-C
Confidence 689999999999999999999999999999864 8888888753 34677899999 9
Q ss_pred ccEEEEE-eCCeEEEEEeCC-CHHHHHHHHHhh
Q 032982 97 LPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKR 127 (129)
Q Consensus 97 ~Pt~~i~-~~G~~~~~~~g~-~~~~l~~~i~~~ 127 (129)
+|+++++ ++|+++....|. +.+++.++++++
T Consensus 139 ~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 139 LPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred cCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 9987766 689999888888 899999998765
No 80
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.62 E-value=1e-14 Score=83.44 Aligned_cols=70 Identities=19% Similarity=0.283 Sum_probs=57.8
Q ss_pred EEEEcCCChhHhhhhHHHHHHHHHcCC-cEEEEEECCCChhHHhhcCCcccccEEEEEeCCeEEEEEeCC--CHHHHHHH
Q 032982 47 IYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA--KKDELQMK 123 (129)
Q Consensus 47 v~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~--~~~~l~~~ 123 (129)
|.||++||++|+.+.|.++++.++++. +.++.+| +.+.+.+|++. ++|++++ ||+.+ ..|. +.+++.++
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~-~vPti~i--~G~~~--~~G~~~~~~~l~~~ 74 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVT-ATPGVAV--DGELV--IMGKIPSKEEIKEI 74 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCC-cCCEEEE--CCEEE--EEeccCCHHHHHHH
Confidence 789999999999999999999999865 7777776 34457889999 9999988 88877 5563 56788776
Q ss_pred H
Q 032982 124 T 124 (129)
Q Consensus 124 i 124 (129)
+
T Consensus 75 l 75 (76)
T TIGR00412 75 L 75 (76)
T ss_pred h
Confidence 5
No 81
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.61 E-value=8e-15 Score=93.38 Aligned_cols=71 Identities=23% Similarity=0.479 Sum_probs=57.7
Q ss_pred cCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcC---------CcEEEEEECCCCh-------------------------
Q 032982 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYT---------DVQFIKIDVDWLP------------------------- 85 (129)
Q Consensus 40 ~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~---------~v~~~~v~~~~~~------------------------- 85 (129)
.++|+++|+|||+||++|+.+.|.|.++.+++. ++.++.|+.++..
T Consensus 23 ~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~ 102 (146)
T cd03008 23 LENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRR 102 (146)
T ss_pred hCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHH
Confidence 478999999999999999999999998765432 3888888876421
Q ss_pred hHHhhcCCcccccEEEEE-eCCeEEEE
Q 032982 86 EAAKAFDLIDVLPTFVLV-KRGKEIDR 111 (129)
Q Consensus 86 ~~~~~~~v~~~~Pt~~i~-~~G~~~~~ 111 (129)
.++++|++. ++|+.+++ .+|+++.+
T Consensus 103 ~l~~~y~v~-~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 103 ELEAQFSVE-ELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHHcCCC-CCCEEEEECCCCcEEee
Confidence 466788999 99987777 58998875
No 82
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.61 E-value=8.2e-15 Score=81.71 Aligned_cols=62 Identities=19% Similarity=0.349 Sum_probs=55.4
Q ss_pred EEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCcccccEEEEEeCCeEE
Q 032982 45 VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEI 109 (129)
Q Consensus 45 ~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~~~ 109 (129)
-+..|+++||++|+.+.+.++++....+++.+..+|++++++++++||+. ++|++++ +|+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~-~vPti~i--~~~~~ 63 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVM-SVPAIVI--NGKVE 63 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCc-ccCEEEE--CCEEE
Confidence 46789999999999999999999888878999999999999999999999 9999865 55543
No 83
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=3.6e-15 Score=109.91 Aligned_cols=101 Identities=21% Similarity=0.362 Sum_probs=82.6
Q ss_pred CceEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC---cEEEEEECCCChhHHhhcCCccc
Q 032982 20 PLVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD---VQFIKIDVDWLPEAAKAFDLIDV 96 (129)
Q Consensus 20 ~~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~---v~~~~v~~~~~~~~~~~~~v~~~ 96 (129)
.++..+.. .++++.+. .++|.|+|.||+|||++|+++.|+++++++.+.+ +.++.+|.+.|.- ....+. +
T Consensus 366 ~pVkvvVg-knfd~iv~---de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~--~~~~~~-~ 438 (493)
T KOG0190|consen 366 SPVKVVVG-KNFDDIVL---DEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDV--PSLKVD-G 438 (493)
T ss_pred CCeEEEee-cCHHHHhh---ccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccC--cccccc-c
Confidence 46777766 88888774 4799999999999999999999999999999875 9999999998743 456788 8
Q ss_pred ccEEEEEeCCe--EEEEEeCC-CHHHHHHHHHhh
Q 032982 97 LPTFVLVKRGK--EIDRVVGA-KKDELQMKTEKR 127 (129)
Q Consensus 97 ~Pt~~i~~~G~--~~~~~~g~-~~~~l~~~i~~~ 127 (129)
+||+.+++.|. -.-.+.|. +.+.|..++++.
T Consensus 439 fPTI~~~pag~k~~pv~y~g~R~le~~~~fi~~~ 472 (493)
T KOG0190|consen 439 FPTILFFPAGHKSNPVIYNGDRTLEDLKKFIKKS 472 (493)
T ss_pred cceEEEecCCCCCCCcccCCCcchHHHHhhhccC
Confidence 99999997654 22335676 889999998764
No 84
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.59 E-value=7e-15 Score=101.74 Aligned_cols=89 Identities=24% Similarity=0.442 Sum_probs=77.7
Q ss_pred cCCCeEEEEEEcCCChhHhhhhHHHHHHHH----HcCC--cEEEEEECCCChhHHhhcCCcccccEEEEEeCCeEEE-EE
Q 032982 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAA----MYTD--VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEID-RV 112 (129)
Q Consensus 40 ~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~----~~~~--v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~~~~-~~ 112 (129)
.....++|.|||+||+.++.+.|++++.++ ++|+ +.+..||+++...++.+|.|. .+||+-+++||.... .+
T Consensus 11 ~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~-KyPTlKvfrnG~~~~rEY 89 (375)
T KOG0912|consen 11 DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHIN-KYPTLKVFRNGEMMKREY 89 (375)
T ss_pred ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccc-cCceeeeeeccchhhhhh
Confidence 458899999999999999999999977654 4564 999999999999999999999 999999999998877 34
Q ss_pred eCC-CHHHHHHHHHhhhC
Q 032982 113 VGA-KKDELQMKTEKRRN 129 (129)
Q Consensus 113 ~g~-~~~~l~~~i~~~~~ 129 (129)
-|. +.+.|.++|++.++
T Consensus 90 Rg~RsVeaL~efi~kq~s 107 (375)
T KOG0912|consen 90 RGQRSVEALIEFIEKQLS 107 (375)
T ss_pred ccchhHHHHHHHHHHHhc
Confidence 566 89999999988653
No 85
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.59 E-value=1.7e-14 Score=85.63 Aligned_cols=66 Identities=35% Similarity=0.672 Sum_probs=54.2
Q ss_pred CCeEEEEEEcCCChhHhhhhHHHHHHHHHcC---CcEEEEEECCCC-------------------------hhHHhhcCC
Q 032982 42 DRLVVIYYTAAWCGPCKFIEPYVKDFAAMYT---DVQFIKIDVDWL-------------------------PEAAKAFDL 93 (129)
Q Consensus 42 ~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~---~v~~~~v~~~~~-------------------------~~~~~~~~v 93 (129)
+|+++|+||++||++|+...|.+.++.++++ ++.++.|+.|+. ..+.+.|++
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 6899999999999999999999999999999 499999988753 246678999
Q ss_pred cccccEEEEE-eCCeE
Q 032982 94 IDVLPTFVLV-KRGKE 108 (129)
Q Consensus 94 ~~~~Pt~~i~-~~G~~ 108 (129)
. ++|+++++ ++|++
T Consensus 81 ~-~iP~~~lld~~G~I 95 (95)
T PF13905_consen 81 N-GIPTLVLLDPDGKI 95 (95)
T ss_dssp T-SSSEEEEEETTSBE
T ss_pred C-cCCEEEEECCCCCC
Confidence 9 99998887 47764
No 86
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.58 E-value=1.7e-14 Score=90.38 Aligned_cols=71 Identities=21% Similarity=0.571 Sum_probs=58.4
Q ss_pred cCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcC----CcEEEEEECCCC------------------------hhHHhhc
Q 032982 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYT----DVQFIKIDVDWL------------------------PEAAKAF 91 (129)
Q Consensus 40 ~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~----~v~~~~v~~~~~------------------------~~~~~~~ 91 (129)
..+++++|+||++||++|+.+.|.+.++.+++. ++.++.++++.. ..++++|
T Consensus 16 ~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (131)
T cd03009 16 LEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTF 95 (131)
T ss_pred hCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHc
Confidence 368999999999999999999999998877763 477777777643 3567899
Q ss_pred CCcccccEEEEEe-CCeEEEE
Q 032982 92 DLIDVLPTFVLVK-RGKEIDR 111 (129)
Q Consensus 92 ~v~~~~Pt~~i~~-~G~~~~~ 111 (129)
++. ++|++++++ +|+++.+
T Consensus 96 ~v~-~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 96 KIE-GIPTLIILDADGEVVTT 115 (131)
T ss_pred CCC-CCCEEEEECCCCCEEcc
Confidence 999 999988885 8987664
No 87
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.58 E-value=2.6e-14 Score=114.77 Aligned_cols=87 Identities=20% Similarity=0.330 Sum_probs=74.7
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC--cEEEEEEC---C------------------------CChhHHhhc
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDV---D------------------------WLPEAAKAF 91 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~--v~~~~v~~---~------------------------~~~~~~~~~ 91 (129)
++|++||.||++||++|+.+.|.|+++.+++++ +.++.|.. | ....+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 689999999999999999999999999999975 77777642 2 233567899
Q ss_pred CCcccccEEEEE-eCCeEEEEEeCC-CHHHHHHHHHhhh
Q 032982 92 DLIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKRR 128 (129)
Q Consensus 92 ~v~~~~Pt~~i~-~~G~~~~~~~g~-~~~~l~~~i~~~~ 128 (129)
++. ++|+++++ ++|+++.++.|. ..++|.+++++++
T Consensus 499 ~V~-~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l 536 (1057)
T PLN02919 499 GVS-SWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAAL 536 (1057)
T ss_pred CCC-ccceEEEECCCCeEEEEEecccCHHHHHHHHHHHH
Confidence 999 99999888 699999999998 8999999998764
No 88
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.58 E-value=1.4e-14 Score=91.01 Aligned_cols=72 Identities=22% Similarity=0.534 Sum_probs=58.1
Q ss_pred hcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcC----CcEEEEEECCCCh-------------------------hHHh
Q 032982 39 KQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYT----DVQFIKIDVDWLP-------------------------EAAK 89 (129)
Q Consensus 39 ~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~----~v~~~~v~~~~~~-------------------------~~~~ 89 (129)
..++|+++|.||++||++|+.+.|.++++.+++. ++.++.++++..+ .+.+
T Consensus 14 ~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 93 (132)
T cd02964 14 ALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEK 93 (132)
T ss_pred HhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHH
Confidence 3478999999999999999999999998877654 3778888776532 3556
Q ss_pred hcCCcccccEEEEE-eCCeEEEE
Q 032982 90 AFDLIDVLPTFVLV-KRGKEIDR 111 (129)
Q Consensus 90 ~~~v~~~~Pt~~i~-~~G~~~~~ 111 (129)
.|++. ++|+++++ ++|+++.+
T Consensus 94 ~~~v~-~iPt~~lid~~G~iv~~ 115 (132)
T cd02964 94 QFKVE-GIPTLVVLKPDGDVVTT 115 (132)
T ss_pred HcCCC-CCCEEEEECCCCCEEch
Confidence 79999 99998888 48887764
No 89
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.57 E-value=7.1e-14 Score=91.62 Aligned_cols=81 Identities=20% Similarity=0.308 Sum_probs=66.0
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCC-------------hhHHhhcCC--cccccEEEEE-eCCeEE
Q 032982 46 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL-------------PEAAKAFDL--IDVLPTFVLV-KRGKEI 109 (129)
Q Consensus 46 lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~-------------~~~~~~~~v--~~~~Pt~~i~-~~G~~~ 109 (129)
+|+||++||++|+.+.|.+.++++++ ++.++.|++|.. ..+.+.|++ . ++|+.+++ ++|++.
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~-g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~-~iPttfLId~~G~i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY-GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPV-ATPTTFLVNVNTLEA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc-CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCC-CCCeEEEEeCCCcEE
Confidence 77899999999999999999999998 677777776632 235678884 6 89976666 799886
Q ss_pred -EEEeCC-CHHHHHHHHHhhh
Q 032982 110 -DRVVGA-KKDELQMKTEKRR 128 (129)
Q Consensus 110 -~~~~g~-~~~~l~~~i~~~~ 128 (129)
..+.|. +.++|.+.+++++
T Consensus 151 ~~~~~G~~~~~~L~~~I~~ll 171 (181)
T PRK13728 151 LPLLQGATDAAGFMARMDTVL 171 (181)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 578899 9999999888765
No 90
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.57 E-value=1.2e-13 Score=86.07 Aligned_cols=88 Identities=10% Similarity=0.036 Sum_probs=77.6
Q ss_pred CCCeEEEEEEcC--CChhHhhhhHHHHHHHHHcC-C-cEEEEEECCCChhHHhhcCCcccccEEEEEeCCeEEEEEeCC-
Q 032982 41 SDRLVVIYYTAA--WCGPCKFIEPYVKDFAAMYT-D-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA- 115 (129)
Q Consensus 41 ~~k~~lv~f~~~--~c~~C~~~~~~l~~~~~~~~-~-v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~- 115 (129)
..+..+|+|-.+ .+|.+....-.|++++++|+ + ++++.+|+|++++++.+|||. ++||+++|++|+.+.+..|.
T Consensus 33 ~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~-siPTLl~FkdGk~v~~i~G~~ 111 (132)
T PRK11509 33 QAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVF-RFPATLVFTGGNYRGVLNGIH 111 (132)
T ss_pred CCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCc-cCCEEEEEECCEEEEEEeCcC
Confidence 455566655432 58889999999999999998 3 999999999999999999999 99999999999999999999
Q ss_pred CHHHHHHHHHhhhC
Q 032982 116 KKDELQMKTEKRRN 129 (129)
Q Consensus 116 ~~~~l~~~i~~~~~ 129 (129)
+.+++.++|++++.
T Consensus 112 ~k~~l~~~I~~~L~ 125 (132)
T PRK11509 112 PWAELINLMRGLVE 125 (132)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998763
No 91
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.56 E-value=3.3e-14 Score=95.14 Aligned_cols=88 Identities=13% Similarity=0.191 Sum_probs=67.1
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC--cEEEEEECCC-------C----hhHHhhcCC--------------
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDW-------L----PEAAKAFDL-------------- 93 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~--v~~~~v~~~~-------~----~~~~~~~~v-------------- 93 (129)
.+|++||.||++||++|+...|.|.++.+++.+ +.++.+++++ . ....+++++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~ 117 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGEN 117 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCc
Confidence 689999999999999999999999999999874 8888887531 1 122233332
Q ss_pred ------------------c---cccc----EEEEEeCCeEEEEEeCC-CHHHHHHHHHhhh
Q 032982 94 ------------------I---DVLP----TFVLVKRGKEIDRVVGA-KKDELQMKTEKRR 128 (129)
Q Consensus 94 ------------------~---~~~P----t~~i~~~G~~~~~~~g~-~~~~l~~~i~~~~ 128 (129)
. ..+| ++++.++|+++.++.|. +.+++.+.|++++
T Consensus 118 ~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll 178 (199)
T PTZ00056 118 THELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELL 178 (199)
T ss_pred cCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence 1 0122 56666899999999988 8888998888776
No 92
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.56 E-value=6.7e-14 Score=86.63 Aligned_cols=81 Identities=27% Similarity=0.496 Sum_probs=63.3
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEEC---------------------CCChhHHhhcCCcccccE
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDV---------------------DWLPEAAKAFDLIDVLPT 99 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~---------------------~~~~~~~~~~~v~~~~Pt 99 (129)
.+++++|.||++||++|+.+.|.+.++++++. +..+.+|- +.+..++++|++. ++|+
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~-~~P~ 96 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVS-VTPA 96 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCC-cccE
Confidence 57999999999999999999999999887742 22222221 2445788999999 9999
Q ss_pred EEEEeCCeEEEEEeCC-CHHHHHHH
Q 032982 100 FVLVKRGKEIDRVVGA-KKDELQMK 123 (129)
Q Consensus 100 ~~i~~~G~~~~~~~g~-~~~~l~~~ 123 (129)
++++++|.+..+..|. +.+.|.+.
T Consensus 97 ~~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 97 IVIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred EEEEcCCCeEEEEeccCCHHHHHhh
Confidence 9998654488889998 88888653
No 93
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.55 E-value=6.9e-14 Score=84.63 Aligned_cols=73 Identities=33% Similarity=0.606 Sum_probs=65.0
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHc--CCcEEEEEECCCC-----------------------hhHHhhcCCcc
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMY--TDVQFIKIDVDWL-----------------------PEAAKAFDLID 95 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~--~~v~~~~v~~~~~-----------------------~~~~~~~~v~~ 95 (129)
.+++++|.||++||+.|+...+.+.++.+++ +++.++.++++.. ..+.+.|++.
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 96 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVR- 96 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcC-
Confidence 5889999999999999999999999999999 4599999999885 6788999999
Q ss_pred cccEEEEE-eCCeEEEEEeC
Q 032982 96 VLPTFVLV-KRGKEIDRVVG 114 (129)
Q Consensus 96 ~~Pt~~i~-~~G~~~~~~~g 114 (129)
++|+++++ .+|+++.++.|
T Consensus 97 ~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 97 GLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred ccceEEEECCCCcEEEEecC
Confidence 99998887 58988887765
No 94
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.52 E-value=1.9e-13 Score=85.21 Aligned_cols=74 Identities=19% Similarity=0.327 Sum_probs=61.3
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC--cEEEEEECC---------------------------CChhHHhhc
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVD---------------------------WLPEAAKAF 91 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~--v~~~~v~~~---------------------------~~~~~~~~~ 91 (129)
++++++|+||+.||++|....|.|.++.+++.+ +.++.++.+ ....+.+.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 689999999999999999999999999999974 888877542 122456678
Q ss_pred CCcccccEEEEE-eCCeEEEEEeCC
Q 032982 92 DLIDVLPTFVLV-KRGKEIDRVVGA 115 (129)
Q Consensus 92 ~v~~~~Pt~~i~-~~G~~~~~~~g~ 115 (129)
++. ++|+++++ ++|+++..+.|.
T Consensus 102 ~v~-~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 102 GNQ-YWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCC-cCCeEEEECCCCcEEEEEecC
Confidence 998 99987777 689999988763
No 95
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.50 E-value=2.8e-13 Score=90.03 Aligned_cols=86 Identities=22% Similarity=0.315 Sum_probs=64.7
Q ss_pred cCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECC--------------------CChhHHhhcCCcccccE
Q 032982 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD--------------------WLPEAAKAFDLIDVLPT 99 (129)
Q Consensus 40 ~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~--------------------~~~~~~~~~~v~~~~Pt 99 (129)
..+|+++|+||++||+.|+.+.|.+.++.+++ ++.++.+..+ ...++++.|++. .+|+
T Consensus 72 ~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~-~~P~ 149 (189)
T TIGR02661 72 APGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVG-KIPY 149 (189)
T ss_pred cCCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCC-ccce
Confidence 36889999999999999999999999988765 4555555422 133667899999 9997
Q ss_pred EEEE-eCCeEEEEEeCCCHHHHHHHHHhh
Q 032982 100 FVLV-KRGKEIDRVVGAKKDELQMKTEKR 127 (129)
Q Consensus 100 ~~i~-~~G~~~~~~~g~~~~~l~~~i~~~ 127 (129)
.+++ ++|++..+......++++++++..
T Consensus 150 ~~lID~~G~I~~~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 150 GVLLDQDGKIRAKGLTNTREHLESLLEAD 178 (189)
T ss_pred EEEECCCCeEEEccCCCCHHHHHHHHHHH
Confidence 6665 689988763323678888887654
No 96
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.50 E-value=1.7e-13 Score=85.35 Aligned_cols=89 Identities=9% Similarity=0.128 Sum_probs=62.3
Q ss_pred eechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHH---HHHHHHcC-CcEEEEEECCCChhHHhhcCCcccccEE
Q 032982 25 LQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYV---KDFAAMYT-DVQFIKIDVDWLPEAAKAFDLIDVLPTF 100 (129)
Q Consensus 25 i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l---~~~~~~~~-~v~~~~v~~~~~~~~~~~~~v~~~~Pt~ 100 (129)
|....++++.+..+..++|+++|.|+++||++|+.+...+ .++.+... +..++.++.+....-....+ . ++||+
T Consensus 6 i~W~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~-~vPti 83 (130)
T cd02960 6 IIWVQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-Q-YVPRI 83 (130)
T ss_pred ccchhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-c-ccCeE
Confidence 3444467888888888999999999999999999999976 44555543 35555666552211111234 5 89999
Q ss_pred EEE-eCCeEEEEEeCC
Q 032982 101 VLV-KRGKEIDRVVGA 115 (129)
Q Consensus 101 ~i~-~~G~~~~~~~g~ 115 (129)
+++ .+|+++.++.|.
T Consensus 84 vFld~~g~vi~~i~Gy 99 (130)
T cd02960 84 MFVDPSLTVRADITGR 99 (130)
T ss_pred EEECCCCCCccccccc
Confidence 999 588877766654
No 97
>smart00594 UAS UAS domain.
Probab=99.49 E-value=6.2e-13 Score=82.57 Aligned_cols=95 Identities=17% Similarity=0.238 Sum_probs=75.1
Q ss_pred hHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHH---HHHHHHcCC-cEEEEEECC--CChhHHhhcCCcccccEEEE
Q 032982 29 HQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYV---KDFAAMYTD-VQFIKIDVD--WLPEAAKAFDLIDVLPTFVL 102 (129)
Q Consensus 29 ~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l---~~~~~~~~~-v~~~~v~~~--~~~~~~~~~~v~~~~Pt~~i 102 (129)
..+++.++.+..++|+++|+|+++||++|+.+...+ .++.+...+ +.++.+|++ +...++++|++. ++|++++
T Consensus 14 gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~-~~P~~~~ 92 (122)
T smart00594 14 GSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLD-SFPYVAI 92 (122)
T ss_pred CCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcC-CCCEEEE
Confidence 356666777777899999999999999999988865 555555544 777778876 345788999999 9999888
Q ss_pred E-eCC-----eEEEEEeCC-CHHHHHHHH
Q 032982 103 V-KRG-----KEIDRVVGA-KKDELQMKT 124 (129)
Q Consensus 103 ~-~~G-----~~~~~~~g~-~~~~l~~~i 124 (129)
+ .+| ..+.++.|. ++++|...+
T Consensus 93 l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 93 VDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 8 455 357788998 899998765
No 98
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.49 E-value=4.3e-13 Score=81.96 Aligned_cols=70 Identities=20% Similarity=0.359 Sum_probs=54.0
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC-cEEEEEECCC--------------------ChhHHhhcCCcccccE
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDW--------------------LPEAAKAFDLIDVLPT 99 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~--------------------~~~~~~~~~v~~~~Pt 99 (129)
++++++|+||++||++|+.+.|.++++.+++.+ +.++.+.-+. ..+++++|++. ++|+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~P~ 98 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVS-KLPY 98 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCC-CcCe
Confidence 488999999999999999999999999888754 6666552110 22456688888 9998
Q ss_pred EEEE-eCCeEEEE
Q 032982 100 FVLV-KRGKEIDR 111 (129)
Q Consensus 100 ~~i~-~~G~~~~~ 111 (129)
.+++ ++|+++.+
T Consensus 99 ~~vid~~G~v~~~ 111 (114)
T cd02967 99 AVLLDEAGVIAAK 111 (114)
T ss_pred EEEECCCCeEEec
Confidence 7777 58988764
No 99
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.8e-13 Score=98.83 Aligned_cols=89 Identities=22% Similarity=0.381 Sum_probs=77.6
Q ss_pred hcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC-cEEEEEECCCChhHHhhcCCcccccEEEEEeCCeEEEEEeCC-C
Q 032982 39 KQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-K 116 (129)
Q Consensus 39 ~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~-~ 116 (129)
...+++++|+||++||++|+.+.|.+.++++.+.+ +.+..||.+++.+++++|+|. ++||+.++.+|...-...|. +
T Consensus 44 ~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~-gfPtl~~f~~~~~~~~~~~~~~ 122 (383)
T KOG0191|consen 44 LKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQ-GFPTLKVFRPGKKPIDYSGPRN 122 (383)
T ss_pred hccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCc-cCcEEEEEcCCCceeeccCccc
Confidence 45788999999999999999999999999999988 999999999999999999999 99999999988433445556 7
Q ss_pred HHHHHHHHHhhh
Q 032982 117 KDELQMKTEKRR 128 (129)
Q Consensus 117 ~~~l~~~i~~~~ 128 (129)
.+.+..++.+.+
T Consensus 123 ~~~~~~~~~~~~ 134 (383)
T KOG0191|consen 123 AESLAEFLIKEL 134 (383)
T ss_pred HHHHHHHHHHhh
Confidence 888888776543
No 100
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.48 E-value=5.4e-13 Score=91.13 Aligned_cols=90 Identities=14% Similarity=0.165 Sum_probs=68.5
Q ss_pred cCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC--cEEEEEECCC-------C----hhHH-hhcCCc----------c
Q 032982 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDW-------L----PEAA-KAFDLI----------D 95 (129)
Q Consensus 40 ~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~--v~~~~v~~~~-------~----~~~~-~~~~v~----------~ 95 (129)
..+|++||.||++||++|....|.|.++.+++.+ +.++.|+++. . ...+ +++++. |
T Consensus 97 ~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G 176 (236)
T PLN02399 97 FKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNG 176 (236)
T ss_pred hCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCc
Confidence 3689999999999999999999999999999874 8898888631 1 1121 222211 0
Q ss_pred -----------------------cccE-EEEEeCCeEEEEEeCC-CHHHHHHHHHhhhC
Q 032982 96 -----------------------VLPT-FVLVKRGKEIDRVVGA-KKDELQMKTEKRRN 129 (129)
Q Consensus 96 -----------------------~~Pt-~~i~~~G~~~~~~~g~-~~~~l~~~i~~~~~ 129 (129)
..|+ ++|.++|+++.++.|. ++++|++.|+++++
T Consensus 177 ~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 177 PSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred chhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 2475 4444899999999999 89999999998874
No 101
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.47 E-value=5.4e-13 Score=92.56 Aligned_cols=107 Identities=23% Similarity=0.346 Sum_probs=81.0
Q ss_pred cCCCceEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCccc
Q 032982 17 AKTPLVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDV 96 (129)
Q Consensus 17 ~~~~~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~ 96 (129)
.+.+.+..|.+.++|.+.+... ..+..|||+||.+.++.|..+...|..++++|+.++|++|..+..+ +..+|.+. .
T Consensus 122 ~~fG~v~ei~~~e~~l~~ie~~-~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f~~~-~ 198 (265)
T PF02114_consen 122 PRFGEVYEIDSGEEFLDAIEKE-SKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-ASENFPDK-N 198 (265)
T ss_dssp ----SEEE--SHHHHHHHCCTS-STT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS-TT-C
T ss_pred CcCceEEEccChhhHHHHHhcc-CCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-cccCCccc-C
Confidence 3467889998878887776542 3456899999999999999999999999999999999999998765 67899999 9
Q ss_pred ccEEEEEeCCeEEEEEeCC--------CHHHHHHHHHh
Q 032982 97 LPTFVLVKRGKEIDRVVGA--------KKDELQMKTEK 126 (129)
Q Consensus 97 ~Pt~~i~~~G~~~~~~~g~--------~~~~l~~~i~~ 126 (129)
.||+++|++|..+..+.|. +.+.|+.++.+
T Consensus 199 LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~ 236 (265)
T PF02114_consen 199 LPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIE 236 (265)
T ss_dssp -SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHT
T ss_pred CCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHH
Confidence 9999999999999988765 24467776654
No 102
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.47 E-value=1.1e-12 Score=86.39 Aligned_cols=82 Identities=18% Similarity=0.128 Sum_probs=63.8
Q ss_pred hcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEE------EEEECCCC----------------------------
Q 032982 39 KQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQF------IKIDVDWL---------------------------- 84 (129)
Q Consensus 39 ~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~------~~v~~~~~---------------------------- 84 (129)
...+|+.+|.|||.||++|+...|.+.+++++ ++.+ +.||.++.
T Consensus 56 ~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~--~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~ 133 (184)
T TIGR01626 56 ELAGKVRVVHHIAGRTSAKEXNASLIDAIKAA--KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDD 133 (184)
T ss_pred HcCCCEEEEEEEecCCChhhccchHHHHHHHc--CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECC
Confidence 44699999999999999999999999999654 4555 66666531
Q ss_pred -hhHHhhcCCcccccE--EEEEeCCeEEEEEeCC-CHHHHHHH
Q 032982 85 -PEAAKAFDLIDVLPT--FVLVKRGKEIDRVVGA-KKDELQMK 123 (129)
Q Consensus 85 -~~~~~~~~v~~~~Pt--~~i~~~G~~~~~~~g~-~~~~l~~~ 123 (129)
..++.+|++. +.|+ +++.++|+++.++.|. +.++++++
T Consensus 134 ~g~v~~~~gv~-~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~ 175 (184)
T TIGR01626 134 KGAVKNAWQLN-SEDSAIIVLDKTGKVKFVKEGALSDSDIQTV 175 (184)
T ss_pred cchHHHhcCCC-CCCceEEEECCCCcEEEEEeCCCCHHHHHHH
Confidence 1345688888 8874 4555899999999998 87777553
No 103
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.46 E-value=5e-13 Score=99.74 Aligned_cols=103 Identities=19% Similarity=0.355 Sum_probs=85.3
Q ss_pred EEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHH---HHHHHHcCCcEEEEEECCCCh----hHHhhcCCcc
Q 032982 23 MELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYV---KDFAAMYTDVQFIKIDVDWLP----EAAKAFDLID 95 (129)
Q Consensus 23 ~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l---~~~~~~~~~v~~~~v~~~~~~----~~~~~~~v~~ 95 (129)
..+....++++.+.+. ++|+|+|.||++||-.|+++++.. .+.+.+.+++.+.+.|.+++. ++.++||+-
T Consensus 457 q~~s~~~~L~~~la~~--~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~- 533 (569)
T COG4232 457 QPISPLAELDQALAEA--KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVF- 533 (569)
T ss_pred hccCCHHHHHHHHHhC--CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCC-
Confidence 6677766777766553 457999999999999999999977 456666778999999998653 566899999
Q ss_pred cccEEEEEe-CCeEEEEEeCC-CHHHHHHHHHhhh
Q 032982 96 VLPTFVLVK-RGKEIDRVVGA-KKDELQMKTEKRR 128 (129)
Q Consensus 96 ~~Pt~~i~~-~G~~~~~~~g~-~~~~l~~~i~~~~ 128 (129)
+.|++++|. +|++.....|. +++.+.+++++..
T Consensus 534 G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 534 GVPTYLFFGPQGSEPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred CCCEEEEECCCCCcCcCCcceecHHHHHHHHHHhc
Confidence 999999996 88887778898 9999999998753
No 104
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.44 E-value=1.4e-12 Score=83.86 Aligned_cols=88 Identities=9% Similarity=0.132 Sum_probs=67.4
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC--cEEEEEEC--------CCC---hhHHhh-cCCc------------
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDV--------DWL---PEAAKA-FDLI------------ 94 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~--v~~~~v~~--------~~~---~~~~~~-~~v~------------ 94 (129)
.+|+++|.||++||++|....|.+.++.+++.+ +.++.++. +.. ...+++ +++.
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~ 100 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS 100 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence 689999999999999999999999999999864 88888874 211 122222 2221
Q ss_pred -------------cccc-----EEEEEeCCeEEEEEeCC-CHHHHHHHHHhhh
Q 032982 95 -------------DVLP-----TFVLVKRGKEIDRVVGA-KKDELQMKTEKRR 128 (129)
Q Consensus 95 -------------~~~P-----t~~i~~~G~~~~~~~g~-~~~~l~~~i~~~~ 128 (129)
++.| ++++.++|+++.++.|. +.+++...|++++
T Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~ 153 (153)
T TIGR02540 101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV 153 (153)
T ss_pred CCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence 1477 57667899999999998 8999999888763
No 105
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.41 E-value=1.2e-12 Score=75.83 Aligned_cols=74 Identities=27% Similarity=0.524 Sum_probs=58.5
Q ss_pred hHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHH---HHHHHH-cCCcEEEEEECCCChhHHhhcCCcccccEEEEEe
Q 032982 29 HQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYV---KDFAAM-YTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 104 (129)
Q Consensus 29 ~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l---~~~~~~-~~~v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~ 104 (129)
.++++.+..+..++|+++|+|+++||++|+.+...+ .++.+. ..++.++.+|.++..... ++... ++|+++++.
T Consensus 4 ~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~-~~~~~-~~P~~~~ld 81 (82)
T PF13899_consen 4 SDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA-QFDRQ-GYPTFFFLD 81 (82)
T ss_dssp SSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH-HHHHC-SSSEEEEEE
T ss_pred hhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH-HhCCc-cCCEEEEeC
Confidence 356777888888999999999999999999999988 556553 345999999998766544 33337 899999875
No 106
>PLN02412 probable glutathione peroxidase
Probab=99.39 E-value=3.6e-12 Score=83.20 Aligned_cols=88 Identities=16% Similarity=0.185 Sum_probs=67.9
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC--cEEEEEECC--------CChhH----HhhcC--------------
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVD--------WLPEA----AKAFD-------------- 92 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~--v~~~~v~~~--------~~~~~----~~~~~-------------- 92 (129)
.+|++||+||++||+.|+...|.|.++.+++.+ +.++.|+.+ ...++ .++++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~ 107 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK 107 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence 679999999999999999999999999999974 888888753 11111 12211
Q ss_pred --------------------CcccccEEEEE-eCCeEEEEEeCC-CHHHHHHHHHhhhC
Q 032982 93 --------------------LIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKRRN 129 (129)
Q Consensus 93 --------------------v~~~~Pt~~i~-~~G~~~~~~~g~-~~~~l~~~i~~~~~ 129 (129)
+. +.|+.+++ ++|+++.++.|. +.+++.+.|+++++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~v~-~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 108 NTAPLYKYLKAEKGGLFGDAIK-WNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred CCCHHHHHHHhhCCCCCCCCcC-CCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 22 35764555 899999999999 89999999988764
No 107
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.39 E-value=2e-12 Score=83.14 Aligned_cols=82 Identities=16% Similarity=0.323 Sum_probs=60.9
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC--cEEEEEECCC-------C----hhHHhh-cCCc------------
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDW-------L----PEAAKA-FDLI------------ 94 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~--v~~~~v~~~~-------~----~~~~~~-~~v~------------ 94 (129)
.+|+++|+||++||+ |....|.|+++.+++.+ +.++.++.+. . ...+++ +++.
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~~ 99 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGE 99 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccCC
Confidence 589999999999999 99999999999999964 8888886532 1 122222 2211
Q ss_pred ----------cccc------------EEEEEeCCeEEEEEeCC-CHHHHHHH
Q 032982 95 ----------DVLP------------TFVLVKRGKEIDRVVGA-KKDELQMK 123 (129)
Q Consensus 95 ----------~~~P------------t~~i~~~G~~~~~~~g~-~~~~l~~~ 123 (129)
.++| +++|.++|+++.++.|. +.++|.+.
T Consensus 100 ~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 100 NAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred CCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 1456 45555899999999998 88887654
No 108
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.36 E-value=6.7e-12 Score=83.03 Aligned_cols=88 Identities=18% Similarity=0.278 Sum_probs=65.5
Q ss_pred CCCeE-EEEEEcCCChhHhhhhHHHHHHHHHcCC--cEEEEEECCC----C----hh---H-Hhhc--------------
Q 032982 41 SDRLV-VIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDW----L----PE---A-AKAF-------------- 91 (129)
Q Consensus 41 ~~k~~-lv~f~~~~c~~C~~~~~~l~~~~~~~~~--v~~~~v~~~~----~----~~---~-~~~~-------------- 91 (129)
.+|++ ++.+|++||++|....|.|.++.+++.+ +.++.++++. . .. . .+++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g 118 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNG 118 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCC
Confidence 67754 4566999999999999999999999874 8888887531 0 10 0 1111
Q ss_pred ----------------------CCcccccE----EEEEeCCeEEEEEeCC-CHHHHHHHHHhhhC
Q 032982 92 ----------------------DLIDVLPT----FVLVKRGKEIDRVVGA-KKDELQMKTEKRRN 129 (129)
Q Consensus 92 ----------------------~v~~~~Pt----~~i~~~G~~~~~~~g~-~~~~l~~~i~~~~~ 129 (129)
++. ++|+ +++.++|+++.++.|. +.+++.+.|+++++
T Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~~~~-~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 119 ENTHEIYKYLRRNSELFQNNTNEAR-QIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred CCCCHHHHHHHhhCCCCcCccccCc-ccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHhc
Confidence 233 6783 7777899999999998 88899999988764
No 109
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.35 E-value=2e-11 Score=77.69 Aligned_cols=75 Identities=33% Similarity=0.608 Sum_probs=60.4
Q ss_pred CCCeEEEEEEcC-CChhHhhhhHHHHHHHHHcCC--cEEEEEECCCC---------------------hhHHhhcCCc--
Q 032982 41 SDRLVVIYYTAA-WCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWL---------------------PEAAKAFDLI-- 94 (129)
Q Consensus 41 ~~k~~lv~f~~~-~c~~C~~~~~~l~~~~~~~~~--v~~~~v~~~~~---------------------~~~~~~~~v~-- 94 (129)
.+|+++|.||+. |||+|+...|.+.++.+++.+ +.++.+..+.. ..+.++|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 799999999999 999999999999999888543 88888876543 2455666743
Q ss_pred -----c-cccEEEEE-eCCeEEEEEeCC
Q 032982 95 -----D-VLPTFVLV-KRGKEIDRVVGA 115 (129)
Q Consensus 95 -----~-~~Pt~~i~-~~G~~~~~~~g~ 115 (129)
+ ++|+++++ ++|+++....|.
T Consensus 107 ~~~~~~~~~P~~~lId~~G~V~~~~~g~ 134 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLIDKDGKVVYRHVGP 134 (146)
T ss_dssp CCTTTTSSSSEEEEEETTSBEEEEEESS
T ss_pred cccccCCeecEEEEEECCCEEEEEEeCC
Confidence 1 69975555 799999999998
No 110
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=2.9e-11 Score=76.53 Aligned_cols=92 Identities=17% Similarity=0.362 Sum_probs=75.4
Q ss_pred HHHHHHhcCCCeEEEEEEcCCChhHhhhhHHH---HHHHHHcCC-cEEEEEECCC----------------ChhHHhhcC
Q 032982 33 SQYEASKQSDRLVVIYYTAAWCGPCKFIEPYV---KDFAAMYTD-VQFIKIDVDW----------------LPEAAKAFD 92 (129)
Q Consensus 33 ~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l---~~~~~~~~~-v~~~~v~~~~----------------~~~~~~~~~ 92 (129)
+....+..++|..+++|-++.|++|..+...+ .++++.+.+ +.++.++++. ..++++.|+
T Consensus 33 ~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~ 112 (182)
T COG2143 33 DDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFA 112 (182)
T ss_pred HHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhc
Confidence 34556677999999999999999999999877 556666655 8888888752 348999999
Q ss_pred CcccccEEEEE-eCCeEEEEEeCC-CHHHHHHHHH
Q 032982 93 LIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTE 125 (129)
Q Consensus 93 v~~~~Pt~~i~-~~G~~~~~~~g~-~~~~l~~~i~ 125 (129)
+. ++||++++ ++|+.+..+.|+ +++++...++
T Consensus 113 vr-stPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlk 146 (182)
T COG2143 113 VR-STPTFVFFDKTGKTILELPGYMPPEQFLAVLK 146 (182)
T ss_pred cc-cCceEEEEcCCCCEEEecCCCCCHHHHHHHHH
Confidence 99 99999999 589999999999 9998876553
No 111
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.34 E-value=3e-11 Score=78.98 Aligned_cols=87 Identities=23% Similarity=0.323 Sum_probs=68.9
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHcC--CcEEEEEECCC-----------------------------ChhHHh
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW-----------------------------LPEAAK 89 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~-----------------------------~~~~~~ 89 (129)
+++++||+||++||+.|....+.+.++.++++ ++.|+.+..+. ...+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 68999999999999999999999999999987 38999887753 123566
Q ss_pred hcCCcccccEEEEE-eCCeEEEEEe---------CC-CHHHHHHHHHhhh
Q 032982 90 AFDLIDVLPTFVLV-KRGKEIDRVV---------GA-KKDELQMKTEKRR 128 (129)
Q Consensus 90 ~~~v~~~~Pt~~i~-~~G~~~~~~~---------g~-~~~~l~~~i~~~~ 128 (129)
.|++. .+|+++++ ++|+++.... +. +..++.+.|++++
T Consensus 104 ~~~v~-~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 152 (171)
T cd02969 104 AYGAA-CTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALL 152 (171)
T ss_pred HcCCC-cCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHH
Confidence 88998 99987777 5898876531 12 5577888887765
No 112
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.34 E-value=1.1e-12 Score=97.46 Aligned_cols=87 Identities=18% Similarity=0.369 Sum_probs=72.2
Q ss_pred eeecCCCceEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC----cEEEEEECC--CChhH
Q 032982 14 FIHAKTPLVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD----VQFIKIDVD--WLPEA 87 (129)
Q Consensus 14 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~----v~~~~v~~~--~~~~~ 87 (129)
...+..++++.++- ++++..+.. ..+-.+|.||++||++|+.+.|.++++++...+ +.++.||+- +|..+
T Consensus 33 tLy~~~D~ii~Ld~-~tf~~~v~~---~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~l 108 (606)
T KOG1731|consen 33 TLYSPDDPIIELDV-DTFNAAVFG---SRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKL 108 (606)
T ss_pred cccCCCCCeEEeeh-hhhHHHhcc---cchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhh
Confidence 34455677888765 888887754 346889999999999999999999999998764 888888874 68899
Q ss_pred HhhcCCcccccEEEEEeC
Q 032982 88 AKAFDLIDVLPTFVLVKR 105 (129)
Q Consensus 88 ~~~~~v~~~~Pt~~i~~~ 105 (129)
|++|+|. ++|++-+|..
T Consensus 109 CRef~V~-~~Ptlryf~~ 125 (606)
T KOG1731|consen 109 CREFSVS-GYPTLRYFPP 125 (606)
T ss_pred HhhcCCC-CCceeeecCC
Confidence 9999999 9999999953
No 113
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.1e-11 Score=90.52 Aligned_cols=102 Identities=27% Similarity=0.444 Sum_probs=84.7
Q ss_pred eEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcC--C-cEEEEEECCCChhHHhhcCCccccc
Q 032982 22 VMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYT--D-VQFIKIDVDWLPEAAKAFDLIDVLP 98 (129)
Q Consensus 22 ~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~--~-v~~~~v~~~~~~~~~~~~~v~~~~P 98 (129)
+..+.. +++...+. ..+..++|.||+|||++|+.+.|.++++...+. . +.+..+|.+.+..++.++++. ++|
T Consensus 146 v~~l~~-~~~~~~~~---~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~-~~P 220 (383)
T KOG0191|consen 146 VFELTK-DNFDETVK---DSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVR-GYP 220 (383)
T ss_pred eEEccc-cchhhhhh---ccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhccc-CCc
Confidence 566655 55555553 357889999999999999999999999999885 2 999999999889999999999 999
Q ss_pred EEEEEeCCeE-EEEEeCC-CHHHHHHHHHhhh
Q 032982 99 TFVLVKRGKE-IDRVVGA-KKDELQMKTEKRR 128 (129)
Q Consensus 99 t~~i~~~G~~-~~~~~g~-~~~~l~~~i~~~~ 128 (129)
|+++|.+|.. .....+. +.+.+.+|+.+..
T Consensus 221 t~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~ 252 (383)
T KOG0191|consen 221 TLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKE 252 (383)
T ss_pred eEEEecCCCcccccccccccHHHHHHHHHhhc
Confidence 9999988777 5555666 8999999987654
No 114
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=2.5e-12 Score=85.44 Aligned_cols=100 Identities=20% Similarity=0.428 Sum_probs=84.5
Q ss_pred eeecCCCceEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC--cEEEEEECCCChhHHhhc
Q 032982 14 FIHAKTPLVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWLPEAAKAF 91 (129)
Q Consensus 14 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~--v~~~~v~~~~~~~~~~~~ 91 (129)
+....+..++..+..+..+..++ .++...++|.|++.|.|.|+...|.+.++..+|.. ++|..+|+...++.+.+|
T Consensus 118 P~y~gpe~ikyf~~~q~~deel~--rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kf 195 (265)
T KOG0914|consen 118 PAYSGPETIKYFTNMQLEDEELD--RNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKF 195 (265)
T ss_pred cccCCchheeeecchhhHHHHhc--cCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHhe
Confidence 35566777777766666665543 35788999999999999999999999999999975 999999999999999999
Q ss_pred CCc-----ccccEEEEEeCCeEEEEEeCC
Q 032982 92 DLI-----DVLPTFVLVKRGKEIDRVVGA 115 (129)
Q Consensus 92 ~v~-----~~~Pt~~i~~~G~~~~~~~g~ 115 (129)
+|. +..||+++|.+|+++.|....
T Consensus 196 ris~s~~srQLPT~ilFq~gkE~~RrP~v 224 (265)
T KOG0914|consen 196 RISLSPGSRQLPTYILFQKGKEVSRRPDV 224 (265)
T ss_pred eeccCcccccCCeEEEEccchhhhcCccc
Confidence 987 378999999999998876554
No 115
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.31 E-value=3.5e-11 Score=67.60 Aligned_cols=69 Identities=30% Similarity=0.527 Sum_probs=55.1
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChh----HHhhcCCcccccEEEEEeCCeEEEEEeCCCHHHHH
Q 032982 46 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPE----AAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQ 121 (129)
Q Consensus 46 lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~----~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~~~~~l~ 121 (129)
+..|+++||++|+...+.|++ .++.+..+|+++++. +.+.+++. ++|++++. |+. +.|.+++++.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~~-~vP~~~~~--~~~---~~g~~~~~i~ 70 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----KGIAFEEIDVEKDSAAREEVLKVLGQR-GVPVIVIG--HKI---IVGFDPEKLD 70 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----CCCeEEEEeccCCHHHHHHHHHHhCCC-cccEEEEC--CEE---EeeCCHHHHH
Confidence 467999999999999888865 368899999987755 44678999 99999874 654 5577888888
Q ss_pred HHHH
Q 032982 122 MKTE 125 (129)
Q Consensus 122 ~~i~ 125 (129)
++|+
T Consensus 71 ~~i~ 74 (74)
T TIGR02196 71 QLLE 74 (74)
T ss_pred HHhC
Confidence 8763
No 116
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=99.27 E-value=2.6e-10 Score=68.38 Aligned_cols=97 Identities=20% Similarity=0.235 Sum_probs=70.1
Q ss_pred eEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC-cEEEEEECCCCh----hHHhhcCCccc
Q 032982 22 VMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLP----EAAKAFDLIDV 96 (129)
Q Consensus 22 ~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~~~----~~~~~~~v~~~ 96 (129)
+..|++.+++++.+..+ .+++++|+=.+..||-+......|++.....++ +.++.+|+-++. .++.+|||.+.
T Consensus 1 w~~L~t~eql~~i~~~S--~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~He 78 (105)
T PF11009_consen 1 WKPLTTEEQLEEILEES--KEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHE 78 (105)
T ss_dssp --E--SHHHHHHHHHH-----SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----
T ss_pred CCccCCHHHHHHHHHhc--ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcC
Confidence 35788999999988775 788999988999999999999999999999887 999999998765 46789999989
Q ss_pred ccEEEEEeCCeEEEEEeCC--CHHHH
Q 032982 97 LPTFVLVKRGKEIDRVVGA--KKDEL 120 (129)
Q Consensus 97 ~Pt~~i~~~G~~~~~~~g~--~~~~l 120 (129)
-|.++++++|+.+..-... +.+.|
T Consensus 79 SPQ~ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 79 SPQVILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp SSEEEEEETTEEEEEEEGGG-SHHHH
T ss_pred CCcEEEEECCEEEEECccccCCHHhc
Confidence 9999999999998865433 66554
No 117
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=99.27 E-value=5.7e-11 Score=73.01 Aligned_cols=97 Identities=20% Similarity=0.372 Sum_probs=65.4
Q ss_pred eechhHHHHHHHHHhcCCCeEEEEEEc-------CCChhHhhhhHHHHHHHHHcCC-cEEEEEECCC-------ChhHHh
Q 032982 25 LQSKHQWRSQYEASKQSDRLVVIYYTA-------AWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDW-------LPEAAK 89 (129)
Q Consensus 25 i~~~~~~~~~~~~~~~~~k~~lv~f~~-------~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~-------~~~~~~ 89 (129)
+...+++.+.+.....++++++|+|++ +|||.|....|.+++.-+..++ ..|+.+.+.. +....+
T Consensus 2 v~gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~ 81 (119)
T PF06110_consen 2 VRGYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRT 81 (119)
T ss_dssp EECHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH
T ss_pred ccCHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceE
Confidence 456788888887766678899999984 5999999999999998777765 8999888753 224444
Q ss_pred --hcCCcccccEEEEEeCCeEEEEEeCC---CHHHHHHHHH
Q 032982 90 --AFDLIDVLPTFVLVKRGKEIDRVVGA---KKDELQMKTE 125 (129)
Q Consensus 90 --~~~v~~~~Pt~~i~~~G~~~~~~~g~---~~~~l~~~i~ 125 (129)
++.++ ++||++-+..++ ++.+. +.+.+..+++
T Consensus 82 ~p~~~l~-~IPTLi~~~~~~---rL~e~e~~~~~lv~~~~e 118 (119)
T PF06110_consen 82 DPDLKLK-GIPTLIRWETGE---RLVEEECLNEDLVEMFFE 118 (119)
T ss_dssp --CC----SSSEEEECTSS----EEEHHHHH-HHHHHHHHH
T ss_pred cceeeee-ecceEEEECCCC---ccchhhhccHHHHHHHhc
Confidence 59999 999999998773 34432 5555665554
No 118
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.27 E-value=7.1e-11 Score=74.53 Aligned_cols=83 Identities=17% Similarity=0.140 Sum_probs=66.4
Q ss_pred CCCeEEEEEE-cCCChhHhhhhHHHHHHHHHcC--CcEEEEEECCC---------------------ChhHHhhcCCccc
Q 032982 41 SDRLVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW---------------------LPEAAKAFDLIDV 96 (129)
Q Consensus 41 ~~k~~lv~f~-~~~c~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~---------------------~~~~~~~~~v~~~ 96 (129)
.+++++|.|| +.||+.|....+.+.++.+.+. ++.++.|..+. ...+++.||+. .
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~-~ 100 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVW-G 100 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCc-c
Confidence 5889999999 6899999999999999888875 48888887653 33566788888 7
Q ss_pred c---------cEEEEE-eCCeEEEEEeCC-CHHHHHHHH
Q 032982 97 L---------PTFVLV-KRGKEIDRVVGA-KKDELQMKT 124 (129)
Q Consensus 97 ~---------Pt~~i~-~~G~~~~~~~g~-~~~~l~~~i 124 (129)
. |+++++ ++|++...+.|. +.+.+.+.+
T Consensus 101 ~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 101 EKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred ccccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 6 877666 589999999998 777776654
No 119
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.25 E-value=6.8e-11 Score=71.16 Aligned_cols=82 Identities=34% Similarity=0.685 Sum_probs=68.5
Q ss_pred CCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC-cEEEEEECC-CChhHHhhcC--CcccccEEEEEeCCeEEEEEeC--C
Q 032982 42 DRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVD-WLPEAAKAFD--LIDVLPTFVLVKRGKEIDRVVG--A 115 (129)
Q Consensus 42 ~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~-~~~~~~~~~~--v~~~~Pt~~i~~~G~~~~~~~g--~ 115 (129)
++++++.||++||++|+...|.+.++.++++. +.++.+|.. ....+...|+ +. .+|+++++.+|.......+ .
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~ 110 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVR-SIPTLLLFKDGKEVDRLVGGKV 110 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhc-cCCeEEEEeCcchhhhhhhccc
Confidence 88999999999999999999999999999985 999999997 7889999999 88 9999998888876555544 3
Q ss_pred -CHHHHHHHH
Q 032982 116 -KKDELQMKT 124 (129)
Q Consensus 116 -~~~~l~~~i 124 (129)
+...+....
T Consensus 111 ~~~~~~~~~~ 120 (127)
T COG0526 111 LPKEALIDAL 120 (127)
T ss_pred CCHHHHHHHh
Confidence 445544433
No 120
>PF13728 TraF: F plasmid transfer operon protein
Probab=99.24 E-value=3.8e-10 Score=76.37 Aligned_cols=81 Identities=25% Similarity=0.400 Sum_probs=67.7
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECC-----------CChhHHhhcCCcccccEEEEEe-CC-e
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD-----------WLPEAAKAFDLIDVLPTFVLVK-RG-K 107 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~-----------~~~~~~~~~~v~~~~Pt~~i~~-~G-~ 107 (129)
.++.-|++||.+.|++|+.+.|++..+++++ ++.++.|++| .++.+++++||. .+|+++++. ++ +
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~-~~Pal~Lv~~~~~~ 196 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVK-VTPALFLVNPNTKK 196 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCC-cCCEEEEEECCCCe
Confidence 5889999999999999999999999999999 8888888877 357889999999 999877774 44 4
Q ss_pred EEEEEeCC-CHHHHHHH
Q 032982 108 EIDRVVGA-KKDELQMK 123 (129)
Q Consensus 108 ~~~~~~g~-~~~~l~~~ 123 (129)
...--.|. +.++|.+-
T Consensus 197 ~~pv~~G~~s~~~L~~r 213 (215)
T PF13728_consen 197 WYPVSQGFMSLDELEDR 213 (215)
T ss_pred EEEEeeecCCHHHHHHh
Confidence 55556788 88888654
No 121
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.23 E-value=4.6e-10 Score=68.53 Aligned_cols=103 Identities=21% Similarity=0.331 Sum_probs=84.7
Q ss_pred eEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC-cEEEEEECCCChhHHhhcCCcccccEE
Q 032982 22 VMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTF 100 (129)
Q Consensus 22 ~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~~~~~~~~~~v~~~~Pt~ 100 (129)
+.++++.++.++.+... ..+.++|.|..+|.|.|..+...|.+.+...++ +.++.+|+++.+++.+-|++. ..|++
T Consensus 5 Lp~L~s~~~VdqaI~~t--~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~-~p~tv 81 (142)
T KOG3414|consen 5 LPTLHSGWEVDQAILST--EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELY-DPPTV 81 (142)
T ss_pred ccccccHHHHHHHHhcc--cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhccc-CCceE
Confidence 34667778877777543 789999999999999999999999999999999 999999999999999999999 99998
Q ss_pred EEEeCCeEEE---------EEeCC--CHHHHHHHHHhh
Q 032982 101 VLVKRGKEID---------RVVGA--KKDELQMKTEKR 127 (129)
Q Consensus 101 ~i~~~G~~~~---------~~~g~--~~~~l~~~i~~~ 127 (129)
++|-+++-+. ++.+. +.+++...|+-.
T Consensus 82 mfFfn~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~i 119 (142)
T KOG3414|consen 82 MFFFNNKHMKIDLGTGDNNKINFAFEDKQEFIDIIETI 119 (142)
T ss_pred EEEEcCceEEEeeCCCCCceEEEEeccHHHHHHHHHHH
Confidence 8886665433 33343 577787777644
No 122
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=99.23 E-value=1e-10 Score=73.16 Aligned_cols=84 Identities=24% Similarity=0.432 Sum_probs=55.9
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhc---CCcccccEEEEEe-CCeEEEEEeCCC
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAF---DLIDVLPTFVLVK-RGKEIDRVVGAK 116 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~---~v~~~~Pt~~i~~-~G~~~~~~~g~~ 116 (129)
..+..++.|..+|||.|....|.+.++++..|++.+-.+..|+++++.++| |.. .+|++++++ +|+++.++ |..
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~-~IP~~I~~d~~~~~lg~w-ger 117 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGR-SIPTFIFLDKDGKELGRW-GER 117 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS---SSEEEEE-TT--EEEEE-ESS
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCe-ecCEEEEEcCCCCEeEEE-cCC
Confidence 566788889999999999999999999999988888888888888888777 445 899999995 67888766 445
Q ss_pred HHHHHHHHHh
Q 032982 117 KDELQMKTEK 126 (129)
Q Consensus 117 ~~~l~~~i~~ 126 (129)
++.+.+++++
T Consensus 118 P~~~~~~~~~ 127 (129)
T PF14595_consen 118 PKEVQELVDE 127 (129)
T ss_dssp -HHHH-----
T ss_pred CHHHhhcccc
Confidence 6666666654
No 123
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.22 E-value=1.5e-10 Score=75.72 Aligned_cols=93 Identities=25% Similarity=0.346 Sum_probs=83.4
Q ss_pred CCCceEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCcccc
Q 032982 18 KTPLVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVL 97 (129)
Q Consensus 18 ~~~~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~~ 97 (129)
.++...++.+..++-+... ...-++++||.+.-..|+.|..+|+.+++.+-+.+|+.||+...|-++.+++|. -+
T Consensus 64 GhG~y~ev~~Ekdf~~~~~----kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~Ik-VL 138 (211)
T KOG1672|consen 64 GHGEYEEVASEKDFFEEVK----KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNIK-VL 138 (211)
T ss_pred CCceEEEeccHHHHHHHhh----cCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeeeee-Ee
Confidence 4677888888777665543 466789999999999999999999999999999999999999999999999999 99
Q ss_pred cEEEEEeCCeEEEEEeCC
Q 032982 98 PTFVLVKRGKEIDRVVGA 115 (129)
Q Consensus 98 Pt~~i~~~G~~~~~~~g~ 115 (129)
|++++|.+|+...++.|.
T Consensus 139 P~v~l~k~g~~~D~iVGF 156 (211)
T KOG1672|consen 139 PTVALFKNGKTVDYVVGF 156 (211)
T ss_pred eeEEEEEcCEEEEEEeeH
Confidence 999999999999988775
No 124
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.19 E-value=3.9e-10 Score=71.55 Aligned_cols=83 Identities=14% Similarity=0.183 Sum_probs=63.7
Q ss_pred CCCeEEEEEEcCC-ChhHhhhhHHHHHHHHHcCCcEEEEEECCCC-----------------------hhHHhhcCCccc
Q 032982 41 SDRLVVIYYTAAW-CGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL-----------------------PEAAKAFDLIDV 96 (129)
Q Consensus 41 ~~k~~lv~f~~~~-c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~-----------------------~~~~~~~~v~~~ 96 (129)
.+|+++|+||+.| |++|....+.|.++.++++++.++.|+.+.. ..+++.||+. .
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~-~ 103 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVL-I 103 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCe-e
Confidence 5889999999988 6999999999999999998888999887521 3455677775 3
Q ss_pred ------ccEEEEE-eCCeEEEEEeCC---CHHHHHHHH
Q 032982 97 ------LPTFVLV-KRGKEIDRVVGA---KKDELQMKT 124 (129)
Q Consensus 97 ------~Pt~~i~-~~G~~~~~~~g~---~~~~l~~~i 124 (129)
.|+.+++ ++|+++....|. +...+.+.+
T Consensus 104 ~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 104 KDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAAL 141 (143)
T ss_pred ccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence 5765555 699999988764 344555544
No 125
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.15 E-value=8.2e-10 Score=72.06 Aligned_cols=73 Identities=14% Similarity=0.134 Sum_probs=59.2
Q ss_pred CCCeEEEEEEcCC-ChhHhhhhHHHHHHHHHcCCcEEEEEECCC-----------------------ChhHHhhcCCccc
Q 032982 41 SDRLVVIYYTAAW-CGPCKFIEPYVKDFAAMYTDVQFIKIDVDW-----------------------LPEAAKAFDLIDV 96 (129)
Q Consensus 41 ~~k~~lv~f~~~~-c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~-----------------------~~~~~~~~~v~~~ 96 (129)
.+|+++|.||+.| |++|....+.|.++.+++.++.++.++.|. ...+++.||+. .
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~-~ 121 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVA-I 121 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCe-e
Confidence 6889999999999 999999999999999998778888887652 12567788887 6
Q ss_pred cc---------EEEEE-eCCeEEEEEeC
Q 032982 97 LP---------TFVLV-KRGKEIDRVVG 114 (129)
Q Consensus 97 ~P---------t~~i~-~~G~~~~~~~g 114 (129)
.| +.+++ ++|++...+.+
T Consensus 122 ~~~~~~g~~~r~tfvId~~G~I~~~~~~ 149 (167)
T PRK00522 122 AEGPLKGLLARAVFVLDENNKVVYSELV 149 (167)
T ss_pred cccccCCceeeEEEEECCCCeEEEEEEC
Confidence 66 65555 69999888743
No 126
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=99.14 E-value=1.3e-09 Score=62.22 Aligned_cols=71 Identities=24% Similarity=0.392 Sum_probs=57.1
Q ss_pred EEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCcccccEEEEEeCCeEEEEEeC-C-CHHHHHHHHH
Q 032982 48 YYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVG-A-KKDELQMKTE 125 (129)
Q Consensus 48 ~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~~~~~~~g-~-~~~~l~~~i~ 125 (129)
.+++++|++|..+...++++.+.+ ++.+-.+|....+++ .+||+. ++|++++ ||+. ++.| . +.++|.++|+
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~-~i~~ei~~~~~~~~~-~~ygv~-~vPalvI--ng~~--~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEEL-GIEVEIIDIEDFEEI-EKYGVM-SVPALVI--NGKV--VFVGRVPSKEELKELLE 76 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHT-TEEEEEEETTTHHHH-HHTT-S-SSSEEEE--TTEE--EEESS--HHHHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhc-CCeEEEEEccCHHHH-HHcCCC-CCCEEEE--CCEE--EEEecCCCHHHHHHHhC
Confidence 336888999999999999999998 588878888766666 999999 9999964 6765 4667 5 8899999875
No 127
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.13 E-value=8.6e-10 Score=62.60 Aligned_cols=70 Identities=17% Similarity=0.382 Sum_probs=51.6
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhc-----CCcccccEEEEEeCCeEEEEEeCCCHHHH
Q 032982 46 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAF-----DLIDVLPTFVLVKRGKEIDRVVGAKKDEL 120 (129)
Q Consensus 46 lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~-----~v~~~~Pt~~i~~~G~~~~~~~g~~~~~l 120 (129)
++.||++||++|+.+.+.|.++ ++.+..+|+++.+.....+ ++. .+|++ ++.+|..+. .++..++
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-----~~~~~~idi~~~~~~~~~~~~~~~~~~-~vP~i-~~~~g~~l~---~~~~~~~ 71 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-----GAAYEWVDIEEDEGAADRVVSVNNGNM-TVPTV-KFADGSFLT---NPSAAQV 71 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCceEEEeCcCCHhHHHHHHHHhCCCc-eeCEE-EECCCeEec---CCCHHHH
Confidence 5689999999999999988764 4566678888777665553 888 99997 577886543 4466666
Q ss_pred HHHHH
Q 032982 121 QMKTE 125 (129)
Q Consensus 121 ~~~i~ 125 (129)
.+.++
T Consensus 72 ~~~l~ 76 (77)
T TIGR02200 72 KAKLQ 76 (77)
T ss_pred HHHhh
Confidence 65553
No 128
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.13 E-value=3.4e-09 Score=68.05 Aligned_cols=84 Identities=14% Similarity=0.131 Sum_probs=62.8
Q ss_pred CCCeEEEEEEcC-CChhHhhhhHHHHHHHHHcC--CcEEEEEECCC---------------------ChhHHhhcCCccc
Q 032982 41 SDRLVVIYYTAA-WCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW---------------------LPEAAKAFDLIDV 96 (129)
Q Consensus 41 ~~k~~lv~f~~~-~c~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~---------------------~~~~~~~~~v~~~ 96 (129)
.+|+++|.||.. ||+.|....+.+.++.+++. ++.++.|..+. ...++++||+. .
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~-~ 107 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVW-G 107 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCC-c
Confidence 678999999975 78999999999998888875 38899888753 23456677876 4
Q ss_pred c------------cEEEEE-eCCeEEEEEeCC-CHHHHHHHHH
Q 032982 97 L------------PTFVLV-KRGKEIDRVVGA-KKDELQMKTE 125 (129)
Q Consensus 97 ~------------Pt~~i~-~~G~~~~~~~g~-~~~~l~~~i~ 125 (129)
. |+.+++ ++|+++..+.|. ..+.+...++
T Consensus 108 ~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~~~~ 150 (154)
T PRK09437 108 EKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDVVLD 150 (154)
T ss_pred ccccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHHHHH
Confidence 3 554455 799999999888 5555555443
No 129
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=99.12 E-value=3.1e-09 Score=73.45 Aligned_cols=85 Identities=21% Similarity=0.306 Sum_probs=69.0
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCC-----------hhHHhhcCCcccccEEEEE-eC-Ce
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL-----------PEAAKAFDLIDVLPTFVLV-KR-GK 107 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~-----------~~~~~~~~v~~~~Pt~~i~-~~-G~ 107 (129)
.++.-+++||...|++|+.+.|.+..+++++ ++.++.|++|.. ..+++++|+. .+|++++. .+ ++
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~y-gi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~-~~Pal~Lv~~~t~~ 226 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEY-GISVIPISVDGTLIPGLPNSRSDSGQAQHLGVK-YFPALYLVNPKSQK 226 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCccCChHHHHhcCCc-cCceEEEEECCCCc
Confidence 4669999999999999999999999999998 777777777743 4578999999 99987776 45 45
Q ss_pred EEEEEeCC-CHHHHHHHHHhh
Q 032982 108 EIDRVVGA-KKDELQMKTEKR 127 (129)
Q Consensus 108 ~~~~~~g~-~~~~l~~~i~~~ 127 (129)
...-..|. +.++|.+-|...
T Consensus 227 ~~pv~~G~iS~deL~~Ri~~v 247 (256)
T TIGR02739 227 MSPLAYGFISQDELKERILNV 247 (256)
T ss_pred EEEEeeccCCHHHHHHHHHHH
Confidence 55556788 999997766543
No 130
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=99.12 E-value=6.4e-10 Score=71.73 Aligned_cols=92 Identities=17% Similarity=0.235 Sum_probs=59.2
Q ss_pred HHHHHhcCCCeEEEEEEcCCChhHhhhhHHH---HHHHHHcCC-cEEEEEECCCChhHHhhc--------CCcccccEEE
Q 032982 34 QYEASKQSDRLVVIYYTAAWCGPCKFIEPYV---KDFAAMYTD-VQFIKIDVDWLPEAAKAF--------DLIDVLPTFV 101 (129)
Q Consensus 34 ~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l---~~~~~~~~~-v~~~~v~~~~~~~~~~~~--------~v~~~~Pt~~ 101 (129)
.+..+..++|+++|.++.+||..|+.|.... .++++.+.+ ..-+.+|.++.|++.+.| |.. +.|+.+
T Consensus 29 a~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~g-GwPl~v 107 (163)
T PF03190_consen 29 ALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSG-GWPLTV 107 (163)
T ss_dssp HHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS----SSEEE
T ss_pred HHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCC-CCCceE
Confidence 4566677899999999999999999988744 456666543 788899999999998887 666 999888
Q ss_pred EE-eCCeEEEEEeCCCH------HHHHHHHHh
Q 032982 102 LV-KRGKEIDRVVGAKK------DELQMKTEK 126 (129)
Q Consensus 102 i~-~~G~~~~~~~g~~~------~~l~~~i~~ 126 (129)
++ .+|+++.......+ ..|.+.+.+
T Consensus 108 fltPdg~p~~~~tY~P~~~~~g~~~f~~~l~~ 139 (163)
T PF03190_consen 108 FLTPDGKPFFGGTYFPPEDRYGRPGFLQLLER 139 (163)
T ss_dssp EE-TTS-EEEEESS--SS-BTTB--HHHHHHH
T ss_pred EECCCCCeeeeeeecCCCCCCCCccHHHHHHH
Confidence 87 68998876433333 255555544
No 131
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=99.09 E-value=1e-09 Score=59.01 Aligned_cols=60 Identities=28% Similarity=0.605 Sum_probs=51.1
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHh---hcCCcccccEEEEEeCC
Q 032982 46 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAK---AFDLIDVLPTFVLVKRG 106 (129)
Q Consensus 46 lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~---~~~v~~~~Pt~~i~~~G 106 (129)
++.||+.||++|+.+.+.+.++....+++.+..++++......+ .+++. .+|+++++..|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVG-GVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCc-cccEEEEEeCC
Confidence 47899999999999999999984444569999999998776554 78999 99999999876
No 132
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=99.07 E-value=6.9e-09 Score=63.84 Aligned_cols=96 Identities=16% Similarity=0.230 Sum_probs=73.7
Q ss_pred HHHHHHHHHhcCCCeEEEEEEcC----CChhHhh--hhHHHHHHHHHcCCcEEEEEECCCC--hhHHhhcCCcccccEEE
Q 032982 30 QWRSQYEASKQSDRLVVIYYTAA----WCGPCKF--IEPYVKDFAAMYTDVQFIKIDVDWL--PEAAKAFDLIDVLPTFV 101 (129)
Q Consensus 30 ~~~~~~~~~~~~~k~~lv~f~~~----~c~~C~~--~~~~l~~~~~~~~~v~~~~v~~~~~--~~~~~~~~v~~~~Pt~~ 101 (129)
.+.+.+..+..+.|.++|++|++ ||..|+. ..|.+.++-+. +..++..|+++. ..++..+++. ++|+++
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~--~fv~w~~dv~~~eg~~la~~l~~~-~~P~~~ 81 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT--RMLFWACSVAKPEGYRVSQALRER-TYPFLA 81 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc--CEEEEEEecCChHHHHHHHHhCCC-CCCEEE
Confidence 45666777778999999999999 8888865 33455554432 488888888743 5688999999 999988
Q ss_pred EE---e-CCeEEEEEeCC-CHHHHHHHHHhhh
Q 032982 102 LV---K-RGKEIDRVVGA-KKDELQMKTEKRR 128 (129)
Q Consensus 102 i~---~-~G~~~~~~~g~-~~~~l~~~i~~~~ 128 (129)
++ . +..++.+..|. ++++|...++...
T Consensus 82 ~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~ 113 (116)
T cd02991 82 MIMLKDNRMTIVGRLEGLIQPEDLINRLTFIM 113 (116)
T ss_pred EEEecCCceEEEEEEeCCCCHHHHHHHHHHHH
Confidence 87 2 34468899999 9999998887653
No 133
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.06 E-value=7.3e-10 Score=70.66 Aligned_cols=70 Identities=21% Similarity=0.584 Sum_probs=54.5
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHcC----CcEEEEEECCCC-------------------------hhHHhhc
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYT----DVQFIKIDVDWL-------------------------PEAAKAF 91 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~----~v~~~~v~~~~~-------------------------~~~~~~~ 91 (129)
.+|++.++|.+.|||+|+.+-|++.++..... .+.++.|+.|.. ..+.++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 67999999999999999999999977766543 266666665531 2567799
Q ss_pred CCcccccEEEEE-eCCeEEEE
Q 032982 92 DLIDVLPTFVLV-KRGKEIDR 111 (129)
Q Consensus 92 ~v~~~~Pt~~i~-~~G~~~~~ 111 (129)
+|. ++|++++. .+|..+..
T Consensus 112 ~v~-~iP~l~i~~~dG~~v~~ 131 (157)
T KOG2501|consen 112 EVK-GIPALVILKPDGTVVTE 131 (157)
T ss_pred ccC-cCceeEEecCCCCEehH
Confidence 999 99998877 58876653
No 134
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=99.05 E-value=1.4e-08 Score=62.72 Aligned_cols=102 Identities=22% Similarity=0.283 Sum_probs=79.6
Q ss_pred EEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC-cEEEEEECCCChhHHhhcCCcccccEEE
Q 032982 23 MELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFV 101 (129)
Q Consensus 23 ~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~~~~~~~~~~v~~~~Pt~~ 101 (129)
.++.+..+.++.+... ++++++|.|..+|.+.|-.+...|.+.+.+.++ ..++.+|+++.+++-+.|.+. ..-|++
T Consensus 3 ~~L~s~~~VDqAI~~e--~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvm 79 (133)
T PF02966_consen 3 PHLHSGWHVDQAILSE--EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVM 79 (133)
T ss_dssp EEE-SHHHHHHHHHH---SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEE
T ss_pred cccCccchHHHHHhcc--CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEE
Confidence 5678888888887654 899999999999999999999999999999988 999999999999999999999 444777
Q ss_pred EEeCCeEEEEEeC---------C--CHHHHHHHHHhh
Q 032982 102 LVKRGKEIDRVVG---------A--KKDELQMKTEKR 127 (129)
Q Consensus 102 i~~~G~~~~~~~g---------~--~~~~l~~~i~~~ 127 (129)
+|-+++.+.--.| . +.+++...++-.
T Consensus 80 FF~rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie~i 116 (133)
T PF02966_consen 80 FFFRNKHMMVDFGTGNNNKINWAFEDKQEFIDIIETI 116 (133)
T ss_dssp EEETTEEEEEESSSSSSSSBCS--SCHHHHHHHHHHH
T ss_pred EEecCeEEEEEecCCCccEEEEEcCcHHHHHHHHHHH
Confidence 7767776553332 2 467777776543
No 135
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.03 E-value=3.3e-09 Score=65.43 Aligned_cols=70 Identities=33% Similarity=0.532 Sum_probs=55.9
Q ss_pred CCCeEEEEEEcC-CChhHhhhhHHHHHHHHHcC--CcEEEEEECCCC---------------------hhHHhhcCCcc-
Q 032982 41 SDRLVVIYYTAA-WCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDWL---------------------PEAAKAFDLID- 95 (129)
Q Consensus 41 ~~k~~lv~f~~~-~c~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~~---------------------~~~~~~~~v~~- 95 (129)
.+++++|.||.. ||+.|....+.|.++.++++ ++.++.+..+.. ..+++.|++..
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 679999999999 99999999999999998887 599999988642 34556676652
Q ss_pred ----cccEEEEE-eCCeEEE
Q 032982 96 ----VLPTFVLV-KRGKEID 110 (129)
Q Consensus 96 ----~~Pt~~i~-~~G~~~~ 110 (129)
..|+++++ ++|++++
T Consensus 104 ~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp TTSEESEEEEEEETTSBEEE
T ss_pred cCCceEeEEEEECCCCEEEe
Confidence 67876665 6888765
No 136
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=99.03 E-value=3.2e-09 Score=72.71 Aligned_cols=80 Identities=18% Similarity=0.311 Sum_probs=61.8
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEE--EC-------------------------------------
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKI--DV------------------------------------- 81 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v--~~------------------------------------- 81 (129)
+++.+++.|..+.||+|+.+.+.+.++.+. ++.++.+ ..
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~ 183 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPAS 183 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccc
Confidence 567889999999999999999999887652 4444433 21
Q ss_pred -----CCChhHHhhcCCcccccEEEEEeCCeEEEEEeCC-CHHHHHHHHHhh
Q 032982 82 -----DWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKR 127 (129)
Q Consensus 82 -----~~~~~~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~-~~~~l~~~i~~~ 127 (129)
+++..+++++||. ++|+++ +.||+.+ .|. ++++|.++|++.
T Consensus 184 c~~~v~~~~~la~~lgi~-gTPtiv-~~~G~~~---~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 184 CDVDIADHYALGVQFGVQ-GTPAIV-LSNGTLV---PGYQGPKEMKAFLDEH 230 (232)
T ss_pred ccchHHHhHHHHHHcCCc-cccEEE-EcCCeEe---eCCCCHHHHHHHHHHc
Confidence 0133577899999 999997 7788765 588 899999999864
No 137
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=99.03 E-value=1.2e-08 Score=70.19 Aligned_cols=85 Identities=16% Similarity=0.261 Sum_probs=67.3
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCC-----------ChhHHhhcCCcccccEEEEEe-C-Ce
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW-----------LPEAAKAFDLIDVLPTFVLVK-R-GK 107 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~-----------~~~~~~~~~v~~~~Pt~~i~~-~-G~ 107 (129)
.++.-|++||...|++|+.+.|.+..+++.+ ++.++.|++|. +...++++|+. .+|++++.. + ++
T Consensus 142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y-g~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~-~~PAl~Lv~~~t~~ 219 (248)
T PRK13703 142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTY-GLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVK-YFPALMLVDPKSGS 219 (248)
T ss_pred HhcceEEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCCccChhHHHhcCCc-ccceEEEEECCCCc
Confidence 4568899999999999999999999999998 77776666653 23466799999 999877773 4 45
Q ss_pred EEEEEeCC-CHHHHHHHHHhh
Q 032982 108 EIDRVVGA-KKDELQMKTEKR 127 (129)
Q Consensus 108 ~~~~~~g~-~~~~l~~~i~~~ 127 (129)
...-..|. +.++|.+-|...
T Consensus 220 ~~pv~~G~iS~deL~~Ri~~v 240 (248)
T PRK13703 220 VRPLSYGFITQDDLAKRFLNV 240 (248)
T ss_pred EEEEeeccCCHHHHHHHHHHH
Confidence 66666788 999997766543
No 138
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.02 E-value=5.7e-09 Score=66.29 Aligned_cols=42 Identities=14% Similarity=0.317 Sum_probs=33.6
Q ss_pred CCeEEEEEEcCCChhHhhhhHHHHHHHHHcC--CcEEEEEECCC
Q 032982 42 DRLVVIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW 83 (129)
Q Consensus 42 ~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~ 83 (129)
++++|+.||+.||+.|+...+.|.++.+++. ++.++.|..+.
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~ 67 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPES 67 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCC
Confidence 3445555569999999999999999999884 48889888753
No 139
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.01 E-value=7.6e-09 Score=60.14 Aligned_cols=76 Identities=12% Similarity=0.219 Sum_probs=57.8
Q ss_pred EEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCCh----hHHhhcC--CcccccEEEEEeCCeEEEEEeCCCHH
Q 032982 45 VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP----EAAKAFD--LIDVLPTFVLVKRGKEIDRVVGAKKD 118 (129)
Q Consensus 45 ~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~----~~~~~~~--v~~~~Pt~~i~~~G~~~~~~~g~~~~ 118 (129)
.++.|+.+||++|+...+.|+++..++.++.+..+|+++.+ ++.+..+ +. .+|+++ .+|+.+. .-+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~-~vP~if--i~g~~ig-----g~~ 73 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVE-TVPQIF--VDQKHIG-----GCT 73 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCC-cCCEEE--ECCEEEc-----CHH
Confidence 36789999999999999999999988777999999998653 4555455 46 899976 4776544 345
Q ss_pred HHHHHHHhhh
Q 032982 119 ELQMKTEKRR 128 (129)
Q Consensus 119 ~l~~~i~~~~ 128 (129)
+|.++++.++
T Consensus 74 ~~~~~~~~~~ 83 (85)
T PRK11200 74 DFEAYVKENL 83 (85)
T ss_pred HHHHHHHHhc
Confidence 6777776654
No 140
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.01 E-value=6.2e-09 Score=68.20 Aligned_cols=87 Identities=11% Similarity=0.151 Sum_probs=62.9
Q ss_pred CCCeEEEEEE-cCCChhHhhhhHHHHHHHHHcCC--cEEEEEECCCCh----------------------------hHHh
Q 032982 41 SDRLVVIYYT-AAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWLP----------------------------EAAK 89 (129)
Q Consensus 41 ~~k~~lv~f~-~~~c~~C~~~~~~l~~~~~~~~~--v~~~~v~~~~~~----------------------------~~~~ 89 (129)
.+|++||.|| +.||+.|....+.|.++.+++.+ +.++.|..|... .+++
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 5789999999 89999999999999999988863 888888776421 2344
Q ss_pred hcCCc----c-cccEEEEE-eCCeEEEEEeCC-----CHHHHHHHHHhh
Q 032982 90 AFDLI----D-VLPTFVLV-KRGKEIDRVVGA-----KKDELQMKTEKR 127 (129)
Q Consensus 90 ~~~v~----~-~~Pt~~i~-~~G~~~~~~~g~-----~~~~l~~~i~~~ 127 (129)
+||+. + ..|+++++ ++|++...+.+. +.+++.+.|+++
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 55653 0 35665555 699998887543 356677766553
No 141
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=4.9e-09 Score=63.58 Aligned_cols=79 Identities=18% Similarity=0.400 Sum_probs=62.4
Q ss_pred eechhHHHHHHHHHhcCCCeEEEEEEc--------CCChhHhhhhHHHHHHHHHcCC-cEEEEEECCC-------ChhHH
Q 032982 25 LQSKHQWRSQYEASKQSDRLVVIYYTA--------AWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDW-------LPEAA 88 (129)
Q Consensus 25 i~~~~~~~~~~~~~~~~~k~~lv~f~~--------~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~-------~~~~~ 88 (129)
....+++++.+.... +++.++|+|++ +|||.|.+..|.+.+.-+..+. ++|+.+++.+ +..+.
T Consensus 9 ~~g~e~~~~~~~~~~-n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR 87 (128)
T KOG3425|consen 9 LPGYESFEETLKNVE-NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFR 87 (128)
T ss_pred cchHHHHHHHHHHHh-CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccc
Confidence 345678888777654 45558888885 5999999999999998887776 9999999864 44566
Q ss_pred hhcCC-cccccEEEEEeC
Q 032982 89 KAFDL-IDVLPTFVLVKR 105 (129)
Q Consensus 89 ~~~~v-~~~~Pt~~i~~~ 105 (129)
..+++ . ++||++-+++
T Consensus 88 ~d~~~lt-~vPTLlrw~~ 104 (128)
T KOG3425|consen 88 KDPGILT-AVPTLLRWKR 104 (128)
T ss_pred cCCCcee-ecceeeEEcC
Confidence 67777 8 9999998874
No 142
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.01 E-value=6.1e-09 Score=66.33 Aligned_cols=82 Identities=17% Similarity=0.202 Sum_probs=60.0
Q ss_pred CCeEEEEEE-cCCChhHhhhhHHHHHHHHHcC--CcEEEEEECCC---------------------C--hhHHhhcCCcc
Q 032982 42 DRLVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW---------------------L--PEAAKAFDLID 95 (129)
Q Consensus 42 ~k~~lv~f~-~~~c~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~---------------------~--~~~~~~~~v~~ 95 (129)
+++++|.|| +.||+.|....+.+.++.+++. ++.++.|+.+. . ..+++.|++.
T Consensus 28 ~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~- 106 (149)
T cd03018 28 RKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVF- 106 (149)
T ss_pred CCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCc-
Confidence 388888887 9999999999999999998886 38888887642 2 4566777776
Q ss_pred cc------cEEEEE-eCCeEEEEEeCCC-----HHHHHHHH
Q 032982 96 VL------PTFVLV-KRGKEIDRVVGAK-----KDELQMKT 124 (129)
Q Consensus 96 ~~------Pt~~i~-~~G~~~~~~~g~~-----~~~l~~~i 124 (129)
.. |+++++ ++|++...+.|.+ ..++.+.|
T Consensus 107 ~~~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~ 147 (149)
T cd03018 107 DEDLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEAL 147 (149)
T ss_pred cccCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHh
Confidence 32 355555 6999999887753 44554444
No 143
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.99 E-value=2.7e-09 Score=70.56 Aligned_cols=41 Identities=12% Similarity=0.274 Sum_probs=35.5
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC--cEEEEEECC
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVD 82 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~--v~~~~v~~~ 82 (129)
.+|++||.|||+||+.|. ..+.|+++.++|.+ +.++.+.++
T Consensus 24 ~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeecc
Confidence 689999999999999997 48899999999863 888888763
No 144
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.98 E-value=5.3e-08 Score=64.67 Aligned_cols=87 Identities=18% Similarity=0.179 Sum_probs=64.9
Q ss_pred CCCeEEEEEE-cCCChhHhhhhHHHHHHHHHcC--CcEEEEEECCC-------------------------ChhHHhhcC
Q 032982 41 SDRLVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW-------------------------LPEAAKAFD 92 (129)
Q Consensus 41 ~~k~~lv~f~-~~~c~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~-------------------------~~~~~~~~~ 92 (129)
.+|+++|.|| +.||+.|....+.|.+..+++. ++.++.|+.|. ...++++||
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 6789999999 9999999999999999999885 38888887653 235677888
Q ss_pred Cc---ccc--cEEEEE-eCCeEEEEEeC-----CCHHHHHHHHHhh
Q 032982 93 LI---DVL--PTFVLV-KRGKEIDRVVG-----AKKDELQMKTEKR 127 (129)
Q Consensus 93 v~---~~~--Pt~~i~-~~G~~~~~~~g-----~~~~~l~~~i~~~ 127 (129)
+. .+. |+.+++ .+|++...... .+.+++.+.++.+
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 72 145 765555 69998776533 2567777776543
No 145
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=6e-10 Score=74.47 Aligned_cols=97 Identities=25% Similarity=0.432 Sum_probs=82.9
Q ss_pred ceEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCcccccEE
Q 032982 21 LVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTF 100 (129)
Q Consensus 21 ~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~~Pt~ 100 (129)
.++.+...++| + ...++..+++||++||..|.++...+..+.+..+++.|+..+.++.++++..+.+. +.|++
T Consensus 2 ~v~~i~~~~~f---~---~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v~-~vp~~ 74 (227)
T KOG0911|consen 2 TVQFIVFQEQF---L---DQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAVE-AVPYF 74 (227)
T ss_pred CceeehhHHHH---H---HhccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHHh-cCcee
Confidence 45667777776 2 22789999999999999999999999999999877999999999999999999999 99999
Q ss_pred EEEeCCeEEEEEeCCCHHHHHHHH
Q 032982 101 VLVKRGKEIDRVVGAKKDELQMKT 124 (129)
Q Consensus 101 ~i~~~G~~~~~~~g~~~~~l~~~i 124 (129)
+++..|+.+.++.+..+..+...+
T Consensus 75 ~~~~~~~~v~~l~~~~~~~~~~~~ 98 (227)
T KOG0911|consen 75 VFFFLGEKVDRLSGADPPFLVSKV 98 (227)
T ss_pred eeeecchhhhhhhccCcHHHHHHH
Confidence 999999999998888544444333
No 146
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.96 E-value=1.3e-08 Score=67.52 Aligned_cols=86 Identities=14% Similarity=0.120 Sum_probs=62.2
Q ss_pred CCCeEEEEEE-cCCChhHhhhhHHHHHHHHHcC--CcEEEEEECCC-------------------------ChhHHhhcC
Q 032982 41 SDRLVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW-------------------------LPEAAKAFD 92 (129)
Q Consensus 41 ~~k~~lv~f~-~~~c~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~-------------------------~~~~~~~~~ 92 (129)
.+|++||+|| +.||+.|....+.|.++.+++. ++.++.|..|. ...+++.||
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 6889999999 9999999999999999888875 48888887653 224556777
Q ss_pred Ccc-----cccEEEEE-eCCeEEEEEeCC-----CHHHHHHHHHh
Q 032982 93 LID-----VLPTFVLV-KRGKEIDRVVGA-----KKDELQMKTEK 126 (129)
Q Consensus 93 v~~-----~~Pt~~i~-~~G~~~~~~~g~-----~~~~l~~~i~~ 126 (129)
+.. ..|+.+++ ++|++.....+. +.+++.+.|++
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 741 24755555 799998876432 45666665543
No 147
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.94 E-value=9.6e-09 Score=64.67 Aligned_cols=74 Identities=19% Similarity=0.285 Sum_probs=58.0
Q ss_pred CCCeEEEEEE-cCCChhHhhhhHHHHHHHHHcC--CcEEEEEECCC----------------------ChhHHhhcCCcc
Q 032982 41 SDRLVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW----------------------LPEAAKAFDLID 95 (129)
Q Consensus 41 ~~k~~lv~f~-~~~c~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~----------------------~~~~~~~~~v~~ 95 (129)
.+++++|+|| +.||+.|....+.+.++.+++. ++.++.+..+. ...+++.||+.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~- 99 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVL- 99 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCc-
Confidence 6889999999 7899999999999999988874 48888887753 22455677776
Q ss_pred ccc---------EEEEE-eCCeEEEEEeCC
Q 032982 96 VLP---------TFVLV-KRGKEIDRVVGA 115 (129)
Q Consensus 96 ~~P---------t~~i~-~~G~~~~~~~g~ 115 (129)
..| +++++ ++|+++.++.|.
T Consensus 100 ~~~~~~~~~~~p~~~lid~~g~i~~~~~~~ 129 (140)
T cd02971 100 IEKSAGGGLAARATFIIDPDGKIRYVEVEP 129 (140)
T ss_pred cccccccCceeEEEEEECCCCcEEEEEecC
Confidence 665 55555 689999988876
No 148
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.90 E-value=1.6e-08 Score=58.23 Aligned_cols=61 Identities=15% Similarity=0.263 Sum_probs=46.0
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChh-----HHhhcCCcccccEEEEEeCCeEEE
Q 032982 46 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPE-----AAKAFDLIDVLPTFVLVKRGKEID 110 (129)
Q Consensus 46 lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~-----~~~~~~v~~~~Pt~~i~~~G~~~~ 110 (129)
++.|+++|||+|+...+.|.++.-. +.+.++.++.+++.. +.+.+|+. .+|+++ -+|+.+.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~-~vP~v~--i~g~~ig 66 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQLSNGSEIQDYLEEITGQR-TVPNIF--INGKFIG 66 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeCCCChHHHHHHHHHHhCCC-CCCeEE--ECCEEEc
Confidence 4689999999999999999997721 237788888775542 56677998 999974 4676544
No 149
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.90 E-value=3.1e-08 Score=66.55 Aligned_cols=87 Identities=17% Similarity=0.206 Sum_probs=62.4
Q ss_pred CCCeEEE-EEEcCCChhHhhhhHHHHHHHHHcC--CcEEEEEECCCC---------------------------hhHHhh
Q 032982 41 SDRLVVI-YYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDWL---------------------------PEAAKA 90 (129)
Q Consensus 41 ~~k~~lv-~f~~~~c~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~~---------------------------~~~~~~ 90 (129)
.+++++| .||++||+.|....+.|.++..++. ++.++.+++|.. ..+++.
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 5676665 5799999999999999999988886 388888877631 235556
Q ss_pred cCCcc-----cccEEEEE-eCCeEEEEE----e-CCCHHHHHHHHHhh
Q 032982 91 FDLID-----VLPTFVLV-KRGKEIDRV----V-GAKKDELQMKTEKR 127 (129)
Q Consensus 91 ~~v~~-----~~Pt~~i~-~~G~~~~~~----~-g~~~~~l~~~i~~~ 127 (129)
||+.. .+|+.+++ .+|++.... . |.+.+++.+.|+.+
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l 153 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKAL 153 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 66630 37876666 589887654 2 33678888877764
No 150
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.88 E-value=1.3e-08 Score=64.25 Aligned_cols=42 Identities=21% Similarity=0.369 Sum_probs=36.7
Q ss_pred CCCeEEEEEEcCCChh-HhhhhHHHHHHHHHcCC-----cEEEEEECC
Q 032982 41 SDRLVVIYYTAAWCGP-CKFIEPYVKDFAAMYTD-----VQFIKIDVD 82 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~-C~~~~~~l~~~~~~~~~-----v~~~~v~~~ 82 (129)
.+++++|.||++||++ |....+.+.++.+++.+ +.++.|..+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 6899999999999998 99999999999888753 888888764
No 151
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.86 E-value=5.3e-08 Score=74.36 Aligned_cols=78 Identities=15% Similarity=0.310 Sum_probs=66.6
Q ss_pred CCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCcccccEEEEEeCCeEEEEEeCC-CHHHH
Q 032982 42 DRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDEL 120 (129)
Q Consensus 42 ~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~-~~~~l 120 (129)
.+..+-.|.+++|++|......+++++.+.|++..-.+|....++++++|+|. ++|++++ ||+.+ +.|. +.+++
T Consensus 476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~-~vP~~~i--~~~~~--~~G~~~~~~~ 550 (555)
T TIGR03143 476 KPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIM-SVPAIVV--DDQQV--YFGKKTIEEM 550 (555)
T ss_pred CCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCce-ecCEEEE--CCEEE--EeeCCCHHHH
Confidence 33445566899999999999999999999999999999999999999999999 9999886 55543 4476 89998
Q ss_pred HHHH
Q 032982 121 QMKT 124 (129)
Q Consensus 121 ~~~i 124 (129)
.++|
T Consensus 551 ~~~~ 554 (555)
T TIGR03143 551 LELI 554 (555)
T ss_pred HHhh
Confidence 8876
No 152
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=98.85 E-value=3.1e-08 Score=68.62 Aligned_cols=83 Identities=17% Similarity=0.210 Sum_probs=61.0
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECC--------------------------------------
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD-------------------------------------- 82 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~-------------------------------------- 82 (129)
+.+.+|+.|..+.||+|+.+.+.+..+.+. .++.+..+.+.
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~ 194 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS-GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP 194 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc-CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence 567889999999999999999999887765 24555444320
Q ss_pred ------------CChhHHhhcCCcccccEEEEEe-CCeEEEEEeCC-CHHHHHHHHHh
Q 032982 83 ------------WLPEAAKAFDLIDVLPTFVLVK-RGKEIDRVVGA-KKDELQMKTEK 126 (129)
Q Consensus 83 ------------~~~~~~~~~~v~~~~Pt~~i~~-~G~~~~~~~g~-~~~~l~~~i~~ 126 (129)
++..+++++|+. ++|++++-+ +| .+....|+ ++++|.+++..
T Consensus 195 ~~~~~~~~~~i~~n~~l~~~lGv~-GTPaiv~~d~~G-~~~~v~G~~~~~~L~~~l~~ 250 (251)
T PRK11657 195 ASIPAAVRKQLADNQKLMDDLGAN-ATPAIYYMDKDG-TLQQVVGLPDPAQLAEIMGP 250 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCC-CCCEEEEECCCC-CEEEecCCCCHHHHHHHhCC
Confidence 012366789999 999998775 45 44456798 89999988753
No 153
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.83 E-value=5.1e-08 Score=54.38 Aligned_cols=67 Identities=27% Similarity=0.480 Sum_probs=49.5
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhc----CCcccccEEEEEeCCeEEEEEeCCCHHHHH
Q 032982 46 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAF----DLIDVLPTFVLVKRGKEIDRVVGAKKDELQ 121 (129)
Q Consensus 46 lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~----~v~~~~Pt~~i~~~G~~~~~~~g~~~~~l~ 121 (129)
++.|+++||++|+.....+.+ .++.+..++++......+.+ +.. .+|++++ +|+ ...|.+.++|.
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-----~~i~~~~~~i~~~~~~~~~~~~~~~~~-~vP~i~~--~~~---~i~g~~~~~l~ 70 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-----RGIPFEEVDVDEDPEALEELKKLNGYR-SVPVVVI--GDE---HLSGFRPDKLR 70 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-----CCCCeEEEeCCCCHHHHHHHHHHcCCc-ccCEEEE--CCE---EEecCCHHHHH
Confidence 567899999999998888876 35778888888766555444 677 9999865 453 44567777777
Q ss_pred HH
Q 032982 122 MK 123 (129)
Q Consensus 122 ~~ 123 (129)
++
T Consensus 71 ~~ 72 (73)
T cd02976 71 AL 72 (73)
T ss_pred hh
Confidence 65
No 154
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.83 E-value=5.4e-08 Score=56.74 Aligned_cols=75 Identities=15% Similarity=0.218 Sum_probs=55.7
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCCh----hHHhhcCC--cccccEEEEEeCCeEEEEEeCCCHHH
Q 032982 46 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP----EAAKAFDL--IDVLPTFVLVKRGKEIDRVVGAKKDE 119 (129)
Q Consensus 46 lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~----~~~~~~~v--~~~~Pt~~i~~~G~~~~~~~g~~~~~ 119 (129)
++.|+.+|||+|......|.++..+++++.+..+|++... ++.+.++- . .+|+++ .+|+.+. ..++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~-tVP~if--i~g~~ig-----G~~d 73 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVE-TVPQIF--VDEKHVG-----GCTD 73 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCC-CcCeEE--ECCEEec-----CHHH
Confidence 5778999999999999999998877777888888887533 45566664 6 899985 4665433 4466
Q ss_pred HHHHHHhhh
Q 032982 120 LQMKTEKRR 128 (129)
Q Consensus 120 l~~~i~~~~ 128 (129)
|.+++.+.+
T Consensus 74 l~~~~~~~~ 82 (86)
T TIGR02183 74 FEQLVKENF 82 (86)
T ss_pred HHHHHHhcc
Confidence 777766544
No 155
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=98.81 E-value=2.7e-08 Score=66.28 Aligned_cols=107 Identities=23% Similarity=0.315 Sum_probs=88.0
Q ss_pred cCCCceEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCccc
Q 032982 17 AKTPLVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDV 96 (129)
Q Consensus 17 ~~~~~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~ 96 (129)
++...|+++++..+|...+++.. +.-..+|++|-+.-+.|..+...+.-+++++|.++|+++-.+- ....++|... .
T Consensus 135 p~~~~V~El~~gkqfld~idke~-ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~-~gas~~F~~n-~ 211 (273)
T KOG3171|consen 135 PRYGFVYELETGKQFLDTIDKEL-KSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSN-TGASDRFSLN-V 211 (273)
T ss_pred CccceEEEeccchhHHHHHhccc-ceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeecc-ccchhhhccc-C
Confidence 45778999999999999997743 4557788999999999999999999999999999999998774 4557999999 9
Q ss_pred ccEEEEEeCCeEEEEEeCC--------CHHHHHHHHHh
Q 032982 97 LPTFVLVKRGKEIDRVVGA--------KKDELQMKTEK 126 (129)
Q Consensus 97 ~Pt~~i~~~G~~~~~~~g~--------~~~~l~~~i~~ 126 (129)
+|+++||++|..+..+... .+..|.+|++.
T Consensus 212 lP~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e 249 (273)
T KOG3171|consen 212 LPTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNE 249 (273)
T ss_pred CceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 9999999999987755432 23455565543
No 156
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.79 E-value=9e-08 Score=60.89 Aligned_cols=40 Identities=18% Similarity=0.386 Sum_probs=33.8
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEE
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKID 80 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~ 80 (129)
+.++.|+.|+.++||+|+.+.+.+.++...++++.+...+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~ 43 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKE 43 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEe
Confidence 5788999999999999999999999988888776555544
No 157
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.78 E-value=3.8e-08 Score=65.78 Aligned_cols=76 Identities=21% Similarity=0.235 Sum_probs=55.8
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEEC--C------------------------------------
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDV--D------------------------------------ 82 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~--~------------------------------------ 82 (129)
+.+..++.|+.++||+|+.+.+.+.+ ...++.+..+.+ .
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~---~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~ 152 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP---NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAA 152 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh---ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcc
Confidence 46899999999999999999999887 223444443322 1
Q ss_pred -------CChhHHhhcCCcccccEEEEEeCCeEEEEEeCC-CHHHHHHHH
Q 032982 83 -------WLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKT 124 (129)
Q Consensus 83 -------~~~~~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~-~~~~l~~~i 124 (129)
++..+++++|+. ++|+++ +.+|+.+ .|. +.++|.++|
T Consensus 153 ~~~~~i~~~~~l~~~~gi~-gtPtii-~~~G~~~---~G~~~~~~l~~~L 197 (197)
T cd03020 153 SCDNPVAANLALGRQLGVN-GTPTIV-LADGRVV---PGAPPAAQLEALL 197 (197)
T ss_pred ccCchHHHHHHHHHHcCCC-cccEEE-ECCCeEe---cCCCCHHHHHhhC
Confidence 123567799999 999997 7888764 587 888887764
No 158
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.77 E-value=1.5e-07 Score=71.34 Aligned_cols=81 Identities=19% Similarity=0.324 Sum_probs=68.6
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCcccccEEEEEeCCeEEEEEeCC-CHHH
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDE 119 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~-~~~~ 119 (129)
..+..+-.|.++.||+|......+++++...|++.+-.+|..++++++++|++. ++|++++ ||+.+ +.|. +.++
T Consensus 115 ~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~-~VP~~~i--~~~~~--~~g~~~~~~ 189 (517)
T PRK15317 115 DGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIM-AVPTVFL--NGEEF--GQGRMTLEE 189 (517)
T ss_pred CCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCc-ccCEEEE--CCcEE--EecCCCHHH
Confidence 345668899999999999999999999999999999999999999999999999 9999975 55433 4576 7777
Q ss_pred HHHHHHh
Q 032982 120 LQMKTEK 126 (129)
Q Consensus 120 l~~~i~~ 126 (129)
+.+.+.+
T Consensus 190 ~~~~~~~ 196 (517)
T PRK15317 190 ILAKLDT 196 (517)
T ss_pred HHHHHhc
Confidence 7777653
No 159
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.74 E-value=1.4e-07 Score=72.09 Aligned_cols=106 Identities=12% Similarity=0.167 Sum_probs=86.9
Q ss_pred CceEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCcccccE
Q 032982 20 PLVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPT 99 (129)
Q Consensus 20 ~~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~~Pt 99 (129)
..+..-+..++++..+... ++++.++.|+.+.|.+|.++...+++++...+++.+...|..++..++++|++. ..|+
T Consensus 346 ~~~l~~~~~~~l~~~~~~l--~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~-~~P~ 422 (555)
T TIGR03143 346 GSLLDDSLRQQLVGIFGRL--ENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKIT-KLPT 422 (555)
T ss_pred hhccCHHHHHHHHHHHHhc--CCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCCC-cCCE
Confidence 3355555667777777653 677788899999999999999999999988777999999998899999999999 9999
Q ss_pred EEEEe-CCeEE-EEEeCC-CHHHHHHHHHhhh
Q 032982 100 FVLVK-RGKEI-DRVVGA-KKDELQMKTEKRR 128 (129)
Q Consensus 100 ~~i~~-~G~~~-~~~~g~-~~~~l~~~i~~~~ 128 (129)
+.+++ +|+.. -++.|. ..+++.+||..++
T Consensus 423 ~~i~~~~~~~~~i~f~g~P~G~Ef~s~i~~i~ 454 (555)
T TIGR03143 423 VALLDDDGNYTGLKFHGVPSGHELNSFILALY 454 (555)
T ss_pred EEEEeCCCcccceEEEecCccHhHHHHHHHHH
Confidence 99985 55432 367788 8899999998765
No 160
>PRK15000 peroxidase; Provisional
Probab=98.72 E-value=3.5e-07 Score=61.37 Aligned_cols=86 Identities=16% Similarity=0.199 Sum_probs=63.0
Q ss_pred CCCeEEEEEEc-CCChhHhhhhHHHHHHHHHcCC--cEEEEEECCCCh----------------------------hHHh
Q 032982 41 SDRLVVIYYTA-AWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWLP----------------------------EAAK 89 (129)
Q Consensus 41 ~~k~~lv~f~~-~~c~~C~~~~~~l~~~~~~~~~--v~~~~v~~~~~~----------------------------~~~~ 89 (129)
.+|+++|.||. +||+.|....+.|.++.+++.+ +.++.+..|... .+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 57899999998 5999999999999999999863 888888877321 3444
Q ss_pred hcCCcc-----cccEEEEE-eCCeEEEEEeCC-----CHHHHHHHHHh
Q 032982 90 AFDLID-----VLPTFVLV-KRGKEIDRVVGA-----KKDELQMKTEK 126 (129)
Q Consensus 90 ~~~v~~-----~~Pt~~i~-~~G~~~~~~~g~-----~~~~l~~~i~~ 126 (129)
.||+.. ..|..+++ .+|++.....+. +.+++.+.++.
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 556541 47865555 699988876553 45666666654
No 161
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.72 E-value=2.6e-09 Score=71.84 Aligned_cols=99 Identities=27% Similarity=0.501 Sum_probs=80.8
Q ss_pred CCceEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC--cEEEEEECCCChhHHhhcCCccc
Q 032982 19 TPLVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWLPEAAKAFDLIDV 96 (129)
Q Consensus 19 ~~~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~--v~~~~v~~~~~~~~~~~~~v~~~ 96 (129)
.+.++.++. +++...+ ..-++|+|+++|||.|....+++++++.---+ +++..||+..++.+.-+|=+. .
T Consensus 23 ~s~~~~~~e-enw~~~l------~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vt-a 94 (248)
T KOG0913|consen 23 SSKLTRIDE-ENWKELL------TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVT-A 94 (248)
T ss_pred cceeEEecc-cchhhhh------chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEE-e
Confidence 335666655 7777655 34568999999999999999999998765444 999999999999999999999 9
Q ss_pred ccEEEEEeCCeEEEEEeCC-CHHHHHHHHHh
Q 032982 97 LPTFVLVKRGKEIDRVVGA-KKDELQMKTEK 126 (129)
Q Consensus 97 ~Pt~~i~~~G~~~~~~~g~-~~~~l~~~i~~ 126 (129)
.||+.=.++|. ..++.|. +...+.+++..
T Consensus 95 LptIYHvkDGe-FrrysgaRdk~dfisf~~~ 124 (248)
T KOG0913|consen 95 LPTIYHVKDGE-FRRYSGARDKNDFISFEEH 124 (248)
T ss_pred cceEEEeeccc-cccccCcccchhHHHHHHh
Confidence 99998888984 4567787 88888888753
No 162
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.70 E-value=3.6e-07 Score=62.00 Aligned_cols=87 Identities=13% Similarity=0.157 Sum_probs=62.7
Q ss_pred CCCeE-EEEEEcCCChhHhhhhHHHHHHHHHcC--CcEEEEEECCCC---------------------------hhHHhh
Q 032982 41 SDRLV-VIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDWL---------------------------PEAAKA 90 (129)
Q Consensus 41 ~~k~~-lv~f~~~~c~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~~---------------------------~~~~~~ 90 (129)
.++++ |+.||++|||.|....+.|.++..++. ++.++.+++|.. ..+++.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 46664 678899999999999999999999985 488988887642 235566
Q ss_pred cCCc------ccccEEEEE-eCCeEEEEEeC-----CCHHHHHHHHHhh
Q 032982 91 FDLI------DVLPTFVLV-KRGKEIDRVVG-----AKKDELQMKTEKR 127 (129)
Q Consensus 91 ~~v~------~~~Pt~~i~-~~G~~~~~~~g-----~~~~~l~~~i~~~ 127 (129)
||+. ...|+++++ .+|++...+.. .+.+++.+.|+++
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 7762 146876666 58998776532 2467777777654
No 163
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.68 E-value=4.6e-07 Score=60.91 Aligned_cols=85 Identities=19% Similarity=0.201 Sum_probs=60.2
Q ss_pred Ce-EEEEEEcCCChhHhhhhHHHHHHHHHcC--CcEEEEEECCCC---------------------------hhHHhhcC
Q 032982 43 RL-VVIYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDWL---------------------------PEAAKAFD 92 (129)
Q Consensus 43 k~-~lv~f~~~~c~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~~---------------------------~~~~~~~~ 92 (129)
++ +|+.||++|||.|....+.|.++.+++. ++.++.+++|.. ..+++.||
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg 105 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLG 105 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcC
Confidence 54 4557899999999999999999998886 388888887641 24566777
Q ss_pred Ccc---c----cc-EEEEEeCCeEEEEEeC-----CCHHHHHHHHHhh
Q 032982 93 LID---V----LP-TFVLVKRGKEIDRVVG-----AKKDELQMKTEKR 127 (129)
Q Consensus 93 v~~---~----~P-t~~i~~~G~~~~~~~g-----~~~~~l~~~i~~~ 127 (129)
+.. + .| +++|..+|++...+.+ .+.+++.+.|+++
T Consensus 106 ~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 106 MIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred CccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 641 1 23 3545579998876654 2567777777654
No 164
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.66 E-value=6.2e-07 Score=62.36 Aligned_cols=86 Identities=21% Similarity=0.200 Sum_probs=62.7
Q ss_pred CCCeEEEEEE-cCCChhHhhhhHHHHHHHHHcC--CcEEEEEECCC----------------------------ChhHHh
Q 032982 41 SDRLVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW----------------------------LPEAAK 89 (129)
Q Consensus 41 ~~k~~lv~f~-~~~c~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~----------------------------~~~~~~ 89 (129)
.++++|++|| ++||+.|....+.|.+..+++. ++.++.+..|. +..+++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 5678888887 8999999999999999988885 38888887764 124666
Q ss_pred hcCCcc----cccEEEEE-eCCeEEEEEe-----CCCHHHHHHHHHh
Q 032982 90 AFDLID----VLPTFVLV-KRGKEIDRVV-----GAKKDELQMKTEK 126 (129)
Q Consensus 90 ~~~v~~----~~Pt~~i~-~~G~~~~~~~-----g~~~~~l~~~i~~ 126 (129)
.||+.. ..|+.+++ ++|++..... |.+.+++.+.|+.
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~a 223 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDA 223 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 778741 36866666 5999887653 2256777776654
No 165
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=98.64 E-value=5.3e-07 Score=57.99 Aligned_cols=80 Identities=23% Similarity=0.372 Sum_probs=61.7
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHc--CC-cEEEEEECCCC---------------------------------
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMY--TD-VQFIKIDVDWL--------------------------------- 84 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~--~~-v~~~~v~~~~~--------------------------------- 84 (129)
..+++|+.|+...||+|+.+.+.+.++.+++ ++ +.|...++-..
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE 90 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 5788999999999999999999999998888 55 88888765210
Q ss_pred -----------------------------------hhHHhhcCCcccccEEEEEeCCeEEEEEeCC-CHHHHHHHHHh
Q 032982 85 -----------------------------------PEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEK 126 (129)
Q Consensus 85 -----------------------------------~~~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~-~~~~l~~~i~~ 126 (129)
...++++||. ++||+++ ||+.+ .+. +.++|.++|++
T Consensus 91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~tPt~~i--nG~~~---~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGIT-GTPTFFI--NGKYV---VGPYTIEELKELIDK 162 (162)
T ss_dssp STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-S-SSSEEEE--TTCEE---ETTTSHHHHHHHHHH
T ss_pred ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCc-cccEEEE--CCEEe---CCCCCHHHHHHHHcC
Confidence 0123466888 9999987 88774 566 99999999975
No 166
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.64 E-value=3.6e-07 Score=51.39 Aligned_cols=67 Identities=24% Similarity=0.416 Sum_probs=50.7
Q ss_pred EEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhc---CCcccccEEEEEeCCeEEEEEeCCCHHHHHHH
Q 032982 47 IYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAF---DLIDVLPTFVLVKRGKEIDRVVGAKKDELQMK 123 (129)
Q Consensus 47 v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~---~v~~~~Pt~~i~~~G~~~~~~~g~~~~~l~~~ 123 (129)
..|..++||+|+.....|.+ .++.|-.+|+++++...+.+ |.. .+|++++ +|. ....|.++++|.++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-----~~i~~~~~di~~~~~~~~~~~~~g~~-~vP~v~~--~g~--~~~~G~~~~~~~~~ 71 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-----HGIAFEEINIDEQPEAIDYVKAQGFR-QVPVIVA--DGD--LSWSGFRPDKLKAL 71 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCc-ccCEEEE--CCC--cEEeccCHHHHHhc
Confidence 46789999999999999975 36888889999887666555 777 8999755 332 24557788888653
No 167
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.64 E-value=4.1e-07 Score=49.27 Aligned_cols=55 Identities=25% Similarity=0.448 Sum_probs=43.2
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHh----hcCCcccccEEEEEeCCeE
Q 032982 46 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAK----AFDLIDVLPTFVLVKRGKE 108 (129)
Q Consensus 46 lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~----~~~v~~~~Pt~~i~~~G~~ 108 (129)
++.|+.++|++|......|++ .++.+-.+|+++.++..+ ..|.. .+|++++ +|+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~-----~~i~y~~~dv~~~~~~~~~l~~~~g~~-~~P~v~i--~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE-----KGIPYEEVDVDEDEEAREELKELSGVR-TVPQVFI--DGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH-----TTBEEEEEEGGGSHHHHHHHHHHHSSS-SSSEEEE--TTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHH-----cCCeeeEcccccchhHHHHHHHHcCCC-ccCEEEE--CCEE
Confidence 567999999999999999954 368899999988754333 34888 9999875 6654
No 168
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.63 E-value=1e-06 Score=50.75 Aligned_cols=71 Identities=24% Similarity=0.345 Sum_probs=54.7
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHH---hhcCCcccccEEEEEeCCeEEEEEeCCCHHHHHH
Q 032982 46 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAA---KAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQM 122 (129)
Q Consensus 46 lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~---~~~~v~~~~Pt~~i~~~G~~~~~~~g~~~~~l~~ 122 (129)
+..|..+||++|+.....|.+ .++.|-.+|+++.++.. +..|.. .+|++++ ++. ...|.++++|.+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~gI~~~~idi~~~~~~~~~~~~~g~~-~vPvv~i--~~~---~~~Gf~~~~l~~ 71 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----RGFDFEMINVDRVPEAAETLRAQGFR-QLPVVIA--GDL---SWSGFRPDMINR 71 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCC-CcCEEEE--CCE---EEecCCHHHHHH
Confidence 567889999999999999865 47999999999877543 344667 8999864 443 355889999998
Q ss_pred HHHhh
Q 032982 123 KTEKR 127 (129)
Q Consensus 123 ~i~~~ 127 (129)
++-.+
T Consensus 72 ~~~~~ 76 (81)
T PRK10329 72 LHPAP 76 (81)
T ss_pred HHHhh
Confidence 87654
No 169
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.62 E-value=8e-07 Score=60.29 Aligned_cols=87 Identities=15% Similarity=0.144 Sum_probs=61.9
Q ss_pred CCCeEEE-EEEcCCChhHhhhhHHHHHHHHHcC--CcEEEEEECCCC---------------------------hhHHhh
Q 032982 41 SDRLVVI-YYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDWL---------------------------PEAAKA 90 (129)
Q Consensus 41 ~~k~~lv-~f~~~~c~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~~---------------------------~~~~~~ 90 (129)
.+|+++| .||++||+.|....+.|.+...++. ++.++.+++|.. ..++++
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 5666665 7789999999999999999999985 488888887632 245557
Q ss_pred cCCcc------cccEEEEE-eCCeEEEEEeCC-----CHHHHHHHHHhh
Q 032982 91 FDLID------VLPTFVLV-KRGKEIDRVVGA-----KKDELQMKTEKR 127 (129)
Q Consensus 91 ~~v~~------~~Pt~~i~-~~G~~~~~~~g~-----~~~~l~~~i~~~ 127 (129)
||+.. ..|+.+++ .+|++.....+. +.+++.+.|+.+
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 77630 35765555 689887765432 567777777653
No 170
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.61 E-value=9e-07 Score=67.15 Aligned_cols=81 Identities=21% Similarity=0.321 Sum_probs=68.2
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCcccccEEEEEeCCeEEEEEeCC-CHHH
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDE 119 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~-~~~~ 119 (129)
..+..+-.|.++.||+|......+.+++...|++..-.+|..+.++++++|++. ++|++++ ||+.+ +.|. +.++
T Consensus 116 ~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~-~VP~~~i--~~~~~--~~g~~~~~~ 190 (515)
T TIGR03140 116 NGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQ-GVPAVFL--NGEEF--HNGRMDLAE 190 (515)
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCc-ccCEEEE--CCcEE--EecCCCHHH
Confidence 355668899999999999999999999999999999999999999999999999 9999976 45432 4466 7777
Q ss_pred HHHHHHh
Q 032982 120 LQMKTEK 126 (129)
Q Consensus 120 l~~~i~~ 126 (129)
+.+.+.+
T Consensus 191 ~~~~l~~ 197 (515)
T TIGR03140 191 LLEKLEE 197 (515)
T ss_pred HHHHHhh
Confidence 7666644
No 171
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=98.58 E-value=4e-07 Score=60.17 Aligned_cols=104 Identities=14% Similarity=0.248 Sum_probs=81.5
Q ss_pred cCCCceEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCccc
Q 032982 17 AKTPLVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDV 96 (129)
Q Consensus 17 ~~~~~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~ 96 (129)
++.+.|..|+. .++-+.+.++ .++-+|+|+.|...-|.|..+..+|++++.+||.++|+.+-.... ...|.-. .
T Consensus 88 ~kfG~V~~ISg-~dyv~EVT~A-s~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~c---IpNYPe~-n 161 (240)
T KOG3170|consen 88 AKFGEVFPISG-PDYVKEVTKA-SEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTC---IPNYPES-N 161 (240)
T ss_pred hcccceeeccc-hHHHHHHHhc-cCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccc---cCCCccc-C
Confidence 56788899977 6777778775 468899999999999999999999999999999999999876543 2445556 8
Q ss_pred ccEEEEEeCCeEEEEEe------CC--CHHHHHHHHHh
Q 032982 97 LPTFVLVKRGKEIDRVV------GA--KKDELQMKTEK 126 (129)
Q Consensus 97 ~Pt~~i~~~G~~~~~~~------g~--~~~~l~~~i~~ 126 (129)
.||+++|..|.+...+. |. +.+++..++-+
T Consensus 162 lPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~q 199 (240)
T KOG3170|consen 162 LPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQ 199 (240)
T ss_pred CCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHh
Confidence 99999998876544332 33 67777766643
No 172
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=4.9e-06 Score=53.56 Aligned_cols=89 Identities=20% Similarity=0.217 Sum_probs=66.9
Q ss_pred cCCCeEEEEEE-cCCChhHhhhhHHHHHHHHHcCC--cEEEEEECC---------------------CChhHHhhcCCcc
Q 032982 40 QSDRLVVIYYT-AAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVD---------------------WLPEAAKAFDLID 95 (129)
Q Consensus 40 ~~~k~~lv~f~-~~~c~~C~~~~~~l~~~~~~~~~--v~~~~v~~~---------------------~~~~~~~~~~v~~ 95 (129)
..++++||+|| .+++|.|-.....|+....++.+ +.++.|..| ....+++.||+.+
T Consensus 28 ~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~ 107 (157)
T COG1225 28 LRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWG 107 (157)
T ss_pred hcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCccc
Confidence 36889999999 88999999999999988888865 888888765 3456778888851
Q ss_pred -----------ccc-EEEEEeCCeEEEEEeCC----CHHHHHHHHHhhh
Q 032982 96 -----------VLP-TFVLVKRGKEIDRVVGA----KKDELQMKTEKRR 128 (129)
Q Consensus 96 -----------~~P-t~~i~~~G~~~~~~~g~----~~~~l~~~i~~~~ 128 (129)
..+ |++|.++|++...+... +.+++.+.++++.
T Consensus 108 ~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l~ 156 (157)
T COG1225 108 EKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKLA 156 (157)
T ss_pred ccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHhc
Confidence 223 67777899998877443 3667777776653
No 173
>PRK13189 peroxiredoxin; Provisional
Probab=98.55 E-value=1.8e-06 Score=58.90 Aligned_cols=87 Identities=14% Similarity=0.175 Sum_probs=61.0
Q ss_pred CCCeEE-EEEEcCCChhHhhhhHHHHHHHHHcC--CcEEEEEECCCC---------------------------hhHHhh
Q 032982 41 SDRLVV-IYYTAAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDWL---------------------------PEAAKA 90 (129)
Q Consensus 41 ~~k~~l-v~f~~~~c~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~~---------------------------~~~~~~ 90 (129)
.+++++ +.||++||+.|....+.|.++..++. ++.++.+.+|.. ..++++
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 466554 56789999999999999999988885 488888877632 235566
Q ss_pred cCCc------ccccEEEEE-eCCeEEEEEeC-----CCHHHHHHHHHhh
Q 032982 91 FDLI------DVLPTFVLV-KRGKEIDRVVG-----AKKDELQMKTEKR 127 (129)
Q Consensus 91 ~~v~------~~~Pt~~i~-~~G~~~~~~~g-----~~~~~l~~~i~~~ 127 (129)
||+. ...|+.+++ .+|++.....+ .+.+++.+.|+.+
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 7754 135765555 69988766543 2567777777654
No 174
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.53 E-value=1.4e-06 Score=49.85 Aligned_cols=59 Identities=17% Similarity=0.298 Sum_probs=43.5
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCCh-----hHHhhcCCcccccEEEEEeCCeEEE
Q 032982 46 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP-----EAAKAFDLIDVLPTFVLVKRGKEID 110 (129)
Q Consensus 46 lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~-----~~~~~~~v~~~~Pt~~i~~~G~~~~ 110 (129)
++.|+++|||+|+...+.|.++.. ...++.++.+... .+.+..|.. .+|++ +.+|+.+.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~g~~-~~P~v--~~~g~~ig 65 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV---KPAVVELDQHEDGSEIQDYLQELTGQR-TVPNV--FIGGKFIG 65 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC---CcEEEEEeCCCChHHHHHHHHHHhCCC-CCCeE--EECCEEEc
Confidence 567899999999999999998654 3567777776542 344566888 99996 45675543
No 175
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.51 E-value=2.5e-06 Score=48.80 Aligned_cols=61 Identities=18% Similarity=0.215 Sum_probs=44.5
Q ss_pred CCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCC---hhHHhhcCCcccccEEEEEeCCeEEE
Q 032982 42 DRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL---PEAAKAFDLIDVLPTFVLVKRGKEID 110 (129)
Q Consensus 42 ~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~---~~~~~~~~v~~~~Pt~~i~~~G~~~~ 110 (129)
++.-++.|+.+||++|+.....|.+ .++.+..+|+++. ..+.+..|.. .+|.++ .+|+.+.
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~-----~gi~y~~idi~~~~~~~~~~~~~g~~-~vP~i~--i~g~~ig 69 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKE-----KGYDFEEIPLGNDARGRSLRAVTGAT-TVPQVF--IGGKLIG 69 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHH-----cCCCcEEEECCCChHHHHHHHHHCCC-CcCeEE--ECCEEEc
Confidence 3344668899999999999999975 2677778888765 3444556878 999985 3676543
No 176
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.51 E-value=6.4e-07 Score=51.61 Aligned_cols=77 Identities=19% Similarity=0.328 Sum_probs=58.7
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCcccccEEEEEeCC--eEEEEEeCC-CHHHHHH
Q 032982 46 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRG--KEIDRVVGA-KKDELQM 122 (129)
Q Consensus 46 lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G--~~~~~~~g~-~~~~l~~ 122 (129)
++.|..+.|.-|......+.++.... .+.+-.+|+++++.+..+|+.. +|.+.+...+ .......+. +.++|.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~-~~~l~~vDI~~d~~l~~~Y~~~--IPVl~~~~~~~~~~~~~~~~~~d~~~L~~ 78 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF-PFELEEVDIDEDPELFEKYGYR--IPVLHIDGIRQFKEQEELKWRFDEEQLRA 78 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS-TCEEEEEETTTTHHHHHHSCTS--TSEEEETT-GGGCTSEEEESSB-HHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHhcCC--CCEEEEcCcccccccceeCCCCCHHHHHH
Confidence 67889999999999999999977664 4999999999999999999965 9997654411 112233466 9999999
Q ss_pred HHH
Q 032982 123 KTE 125 (129)
Q Consensus 123 ~i~ 125 (129)
+|+
T Consensus 79 ~L~ 81 (81)
T PF05768_consen 79 WLE 81 (81)
T ss_dssp HHH
T ss_pred HhC
Confidence 875
No 177
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.48 E-value=1.5e-05 Score=52.25 Aligned_cols=103 Identities=22% Similarity=0.369 Sum_probs=78.2
Q ss_pred CCceEEeechhHHHHHHHHHhcCCCe-EEEEEEcCCChhHhhhhHHHHHHHHHcCC-cEEEEEECCCChhHHhhcCCc-c
Q 032982 19 TPLVMELQSKHQWRSQYEASKQSDRL-VVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLI-D 95 (129)
Q Consensus 19 ~~~~~~i~~~~~~~~~~~~~~~~~k~-~lv~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~~~~~~~~~~v~-~ 95 (129)
.+.+..++. +++...+ ..+++ +++.|..............+.++++.+++ +.|+.+|.+..+.+.+.||+. .
T Consensus 76 ~P~v~~~t~-~n~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~ 150 (184)
T PF13848_consen 76 FPLVPELTP-ENFEKLF----SSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDED 150 (184)
T ss_dssp STSCEEEST-THHHHHH----STSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTS
T ss_pred cccccccch-hhHHHHh----cCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCc
Confidence 445666655 5555433 34544 78888877888889999999999999988 999999999889999999997 3
Q ss_pred cccEEEEEe--CCeEEEEEeCC-CHHHHHHHHHh
Q 032982 96 VLPTFVLVK--RGKEIDRVVGA-KKDELQMKTEK 126 (129)
Q Consensus 96 ~~Pt~~i~~--~G~~~~~~~g~-~~~~l~~~i~~ 126 (129)
..|+++++. +++......+. +.+.+.+|+++
T Consensus 151 ~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 151 DLPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp SSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred cCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 799999886 45433333566 89999999864
No 178
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.46 E-value=2e-06 Score=57.69 Aligned_cols=86 Identities=12% Similarity=0.212 Sum_probs=60.3
Q ss_pred CCCeEEEEEE-cCCChhHhhhhHHHHHHHHHcC--CcEEEEEECCCC----------------------------hhHHh
Q 032982 41 SDRLVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDWL----------------------------PEAAK 89 (129)
Q Consensus 41 ~~k~~lv~f~-~~~c~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~~----------------------------~~~~~ 89 (129)
.+++++|+|| ++||+.|....+.|.++.+++. ++.++.|+.|.. ..+++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 5789999999 4889999988899999998887 488888887632 24556
Q ss_pred hcCCc----c-cccEEEEE-eCCeEEEEEeCC-----CHHHHHHHHHh
Q 032982 90 AFDLI----D-VLPTFVLV-KRGKEIDRVVGA-----KKDELQMKTEK 126 (129)
Q Consensus 90 ~~~v~----~-~~Pt~~i~-~~G~~~~~~~g~-----~~~~l~~~i~~ 126 (129)
.||+. + ..|..+++ .+|++.....+. +.+++.+.|+.
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a 162 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEA 162 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHh
Confidence 77763 1 24665555 689887766552 34555555543
No 179
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=98.44 E-value=2.3e-06 Score=55.85 Aligned_cols=39 Identities=26% Similarity=0.433 Sum_probs=33.4
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC-cEEEEE
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKI 79 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v 79 (129)
..++.|+.|+...||+|+.+.+.+.++.+++++ +.+..+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~ 53 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKV 53 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEc
Confidence 678999999999999999999999999998875 555433
No 180
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.44 E-value=1.3e-06 Score=52.20 Aligned_cols=57 Identities=16% Similarity=0.280 Sum_probs=39.5
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChh-------HHhhcCCcccccEEEEEeCCeEEE
Q 032982 46 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPE-------AAKAFDLIDVLPTFVLVKRGKEID 110 (129)
Q Consensus 46 lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~-------~~~~~~v~~~~Pt~~i~~~G~~~~ 110 (129)
++.|..+|||+|+.....|.+. ++.+..+|+++.++ +.+..|.. .+|++ |-+|+.+.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~-----~i~~~~vdid~~~~~~~~~~~l~~~tg~~-tvP~V--fi~g~~iG 73 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL-----GVNPAVHEIDKEPAGKDIENALSRLGCSP-AVPAV--FVGGKLVG 73 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCCEEEEcCCCccHHHHHHHHHHhcCCC-CcCeE--EECCEEEc
Confidence 5568999999999999988764 45556666665432 23334667 89987 46676655
No 181
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.36 E-value=4.3e-06 Score=46.15 Aligned_cols=57 Identities=19% Similarity=0.316 Sum_probs=42.6
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHh----hcCCcccccEEEEEeCCeEEE
Q 032982 46 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAK----AFDLIDVLPTFVLVKRGKEID 110 (129)
Q Consensus 46 lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~----~~~v~~~~Pt~~i~~~G~~~~ 110 (129)
++.|+++||++|+.....|.+.. +.+..+|++++++..+ ..+.. .+|+++ .+|+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~~~~~~~l~~~~~~~-~~P~~~--~~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-----IEFEEIDILEDGELREELKELSGWP-TVPQIF--INGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CcEEEEECCCCHHHHHHHHHHhCCC-CcCEEE--ECCEEEe
Confidence 56788999999999999998753 7788888887665433 34666 788764 5776655
No 182
>PHA03050 glutaredoxin; Provisional
Probab=98.33 E-value=9.2e-06 Score=49.34 Aligned_cols=60 Identities=12% Similarity=0.099 Sum_probs=40.9
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCC---Ch----hHHhhcCCcccccEEEEEeCCeEEE
Q 032982 46 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW---LP----EAAKAFDLIDVLPTFVLVKRGKEID 110 (129)
Q Consensus 46 lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~---~~----~~~~~~~v~~~~Pt~~i~~~G~~~~ 110 (129)
++.|..+|||+|+.....|.+..-+.+ .|-.+|+++ .. .+.+..|.. .+|+++ -+|+.+.
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~--~~~~i~i~~~~~~~~~~~~l~~~tG~~-tVP~If--I~g~~iG 81 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRG--AYEIVDIKEFKPENELRDYFEQITGGR-TVPRIF--FGKTSIG 81 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcC--CcEEEECCCCCCCHHHHHHHHHHcCCC-CcCEEE--ECCEEEe
Confidence 557899999999999999988654333 344555553 22 344555777 899984 5676655
No 183
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=98.30 E-value=6.3e-06 Score=49.77 Aligned_cols=84 Identities=10% Similarity=0.119 Sum_probs=62.6
Q ss_pred hHHHHHHHHHhcCCCeEEEEEEcCCC---hhHhhhhHHHHHHHHHcCC-cEEEEEECCCChhHHhhcCCcccccEEEEEe
Q 032982 29 HQWRSQYEASKQSDRLVVIYYTAAWC---GPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVK 104 (129)
Q Consensus 29 ~~~~~~~~~~~~~~k~~lv~f~~~~c---~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~ 104 (129)
++++..+. .+...+++| +.+| +.|....-++.++.+.+++ +....++-.....+..+||+. ..|++++++
T Consensus 17 ~~ld~~l~----~~~~~vlf~-~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~-~~PaLvf~R 90 (107)
T PF07449_consen 17 DTLDAFLA----APGDAVLFF-AGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVR-RWPALVFFR 90 (107)
T ss_dssp CCHHHHHH----CCSCEEEEE-SS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-T-SSSEEEEEE
T ss_pred hhHHHHHh----CCCcEEEEE-CCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCc-cCCeEEEEE
Confidence 45555442 355555544 5444 5555556688999999988 778888877778999999999 999999999
Q ss_pred CCeEEEEEeCC-CHH
Q 032982 105 RGKEIDRVVGA-KKD 118 (129)
Q Consensus 105 ~G~~~~~~~g~-~~~ 118 (129)
+|+.+....|. +..
T Consensus 91 ~g~~lG~i~gi~dW~ 105 (107)
T PF07449_consen 91 DGRYLGAIEGIRDWA 105 (107)
T ss_dssp TTEEEEEEESSSTHH
T ss_pred CCEEEEEecCeeccc
Confidence 99999999998 654
No 184
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=98.29 E-value=6.4e-06 Score=55.53 Aligned_cols=41 Identities=15% Similarity=0.301 Sum_probs=33.3
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHH---HHHHHHcCC-cEEEEEEC
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEPYV---KDFAAMYTD-VQFIKIDV 81 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~~l---~~~~~~~~~-v~~~~v~~ 81 (129)
.+++.||.|++-.||+|..+.+.+ +.+.+.+++ +.++.+.+
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence 356789999999999999999876 788888875 67665543
No 185
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=98.28 E-value=9.9e-06 Score=55.25 Aligned_cols=106 Identities=20% Similarity=0.291 Sum_probs=77.5
Q ss_pred cCCCceEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC-cEEEEEECCCCh----------
Q 032982 17 AKTPLVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLP---------- 85 (129)
Q Consensus 17 ~~~~~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~~~---------- 85 (129)
+.+++++.++... ..++. +..+.++|.||.|.+--||+=..-.+.++++.++|++ +.|+.|.+.|..
T Consensus 79 APns~vv~l~g~~-~~~il-df~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW~~~~~ 156 (237)
T PF00837_consen 79 APNSPVVTLDGQR-SCRIL-DFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDGWAFGNN 156 (237)
T ss_pred CCCCceEeeCCCc-ceeHH-HhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCCccCCCC
Confidence 4466777776633 23333 3456899999999999999999999999999999998 788888764311
Q ss_pred ------------------------------------hHHhhcCCccccc-EEEEEeCCeEEEEE-eC---CCHHHHHHHH
Q 032982 86 ------------------------------------EAAKAFDLIDVLP-TFVLVKRGKEIDRV-VG---AKKDELQMKT 124 (129)
Q Consensus 86 ------------------------------------~~~~~~~v~~~~P-t~~i~~~G~~~~~~-~g---~~~~~l~~~i 124 (129)
...+.| ++.| .+.|+++|++++.- .| ++.+++++|+
T Consensus 157 ~~~i~qh~sledR~~aA~~l~~~~~~~pi~vD~mdN~~~~~Y---gA~PeRlyIi~~gkv~Y~Gg~GP~~y~~~e~r~~L 233 (237)
T PF00837_consen 157 PYEIPQHRSLEDRLRAAKLLKEEFPQCPIVVDTMDNNFNKAY---GALPERLYIIQDGKVVYKGGPGPFGYSPEELREWL 233 (237)
T ss_pred ceeecCCCCHHHHHHHHHHHHhhCCCCCEEEEccCCHHHHHh---CCCcceEEEEECCEEEEeCCCCCCcCCHHHHHHHH
Confidence 011122 4788 57777999998852 33 3799999999
Q ss_pred Hhh
Q 032982 125 EKR 127 (129)
Q Consensus 125 ~~~ 127 (129)
++.
T Consensus 234 ~~~ 236 (237)
T PF00837_consen 234 EKY 236 (237)
T ss_pred Hhc
Confidence 874
No 186
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.27 E-value=7.1e-05 Score=53.62 Aligned_cols=106 Identities=16% Similarity=0.182 Sum_probs=70.1
Q ss_pred ecCCCceEEeechhHHHHHHHHHhcCCCeEEEEEEcCCC--hhHhh---hhHHHHHH-HHHc--CCcEEEEEECCCChhH
Q 032982 16 HAKTPLVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWC--GPCKF---IEPYVKDF-AAMY--TDVQFIKIDVDWLPEA 87 (129)
Q Consensus 16 ~~~~~~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c--~~C~~---~~~~l~~~-~~~~--~~v~~~~v~~~~~~~~ 87 (129)
......++.++. .+|.+.+. +-+..+|+|+.+-- ...+. +...+-++ ++-+ .++.|+.||..+...+
T Consensus 30 YDGkDRVi~Lne-KNfk~~lK----kyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~kl 104 (383)
T PF01216_consen 30 YDGKDRVIDLNE-KNFKRALK----KYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKL 104 (383)
T ss_dssp -SSS--CEEE-T-TTHHHHHH----H-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHH
T ss_pred CCCccceEEcch-hHHHHHHH----hhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHH
Confidence 345778999987 77777664 35677788886642 22221 11222222 2222 3599999999999999
Q ss_pred HhhcCCcccccEEEEEeCCeEEEEEeCC-CHHHHHHHHHhhh
Q 032982 88 AKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKRR 128 (129)
Q Consensus 88 ~~~~~v~~~~Pt~~i~~~G~~~~~~~g~-~~~~l~~~i~~~~ 128 (129)
++++|+. ..+++.+|++|+++... |. +++.|.+||-.++
T Consensus 105 AKKLgv~-E~~SiyVfkd~~~IEyd-G~~saDtLVeFl~dl~ 144 (383)
T PF01216_consen 105 AKKLGVE-EEGSIYVFKDGEVIEYD-GERSADTLVEFLLDLL 144 (383)
T ss_dssp HHHHT---STTEEEEEETTEEEEE--S--SHHHHHHHHHHHH
T ss_pred HHhcCcc-ccCcEEEEECCcEEEec-CccCHHHHHHHHHHhc
Confidence 9999999 99999999999999865 77 9999999997764
No 187
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.26 E-value=7.9e-05 Score=46.73 Aligned_cols=105 Identities=15% Similarity=0.247 Sum_probs=75.1
Q ss_pred CceEEeechhHHHHHHHHHhcCCCeEEEEEEcC--CC-hhH-hhhhHHHHHHHHHcCC--cEEEEEECCCChhHHhhcCC
Q 032982 20 PLVMELQSKHQWRSQYEASKQSDRLVVIYYTAA--WC-GPC-KFIEPYVKDFAAMYTD--VQFIKIDVDWLPEAAKAFDL 93 (129)
Q Consensus 20 ~~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~--~c-~~C-~~~~~~l~~~~~~~~~--v~~~~v~~~~~~~~~~~~~v 93 (129)
+.++++++.+.+++.= .+.+.=+|.|.-. +| +.+ ......+.++++++++ +.|+.+|.+....+.+.||+
T Consensus 2 ~~~~~l~~~~~~~~~C----~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl 77 (130)
T cd02983 2 PEIIELTSEDVFEETC----EEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNI 77 (130)
T ss_pred CceEEecCHHHHHhhc----cCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCC
Confidence 4678888866544432 2345555656421 23 334 4567889999999986 89999999999889999999
Q ss_pred cc-cccEEEEEeCCeEEEE-EeCC-CHHHHHHHHHhhh
Q 032982 94 ID-VLPTFVLVKRGKEIDR-VVGA-KKDELQMKTEKRR 128 (129)
Q Consensus 94 ~~-~~Pt~~i~~~G~~~~~-~~g~-~~~~l~~~i~~~~ 128 (129)
.+ ++|+++++...+..+. +.|. +.+.+.+|+++.+
T Consensus 78 ~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l 115 (130)
T cd02983 78 GGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELS 115 (130)
T ss_pred CccCCCEEEEEecccCccccccCccCHHHHHHHHHHHH
Confidence 62 5999988864332343 5566 9999999999875
No 188
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.25 E-value=2.8e-05 Score=43.53 Aligned_cols=66 Identities=15% Similarity=0.234 Sum_probs=46.0
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChh---HHhhcCCcccccEEEEEeCCeEEEEEeCCCHHHHHH
Q 032982 46 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPE---AAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQM 122 (129)
Q Consensus 46 lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~---~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~~~~~l~~ 122 (129)
++.|..+|||+|......|.+ .++.+..+|++++.. +.+..|.. .+|.++ .+|+.+. ..+++.+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~-----~~i~~~~~~v~~~~~~~~~~~~~g~~-~vP~if--i~g~~ig-----g~~~l~~ 69 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE-----NGISYEEIPLGKDITGRSLRAVTGAM-TVPQVF--IDGELIG-----GSDDLEK 69 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-----cCCCcEEEECCCChhHHHHHHHhCCC-CcCeEE--ECCEEEe-----CHHHHHH
Confidence 567899999999999888885 267777888876543 33345777 899874 5565543 3455555
Q ss_pred HH
Q 032982 123 KT 124 (129)
Q Consensus 123 ~i 124 (129)
++
T Consensus 70 ~l 71 (72)
T cd03029 70 YF 71 (72)
T ss_pred Hh
Confidence 54
No 189
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1.9e-05 Score=55.63 Aligned_cols=107 Identities=17% Similarity=0.310 Sum_probs=81.6
Q ss_pred CCCceEEeechhHHHHHHHHHhcCCCeEEEEEEcC----CChhHhhhhHHHHHHHHHcC---------CcEEEEEECCCC
Q 032982 18 KTPLVMELQSKHQWRSQYEASKQSDRLVVIYYTAA----WCGPCKFIEPYVKDFAAMYT---------DVQFIKIDVDWL 84 (129)
Q Consensus 18 ~~~~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~----~c~~C~~~~~~l~~~~~~~~---------~v~~~~v~~~~~ 84 (129)
....++.+++ +.+.+.+. ...++-..+++|.|. .|.-|+....++.-++..+. ++=|..||.++.
T Consensus 38 s~~~VI~~n~-d~~~~~v~-~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~ 115 (331)
T KOG2603|consen 38 SESGVIRMND-DKFSKFVR-PPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDES 115 (331)
T ss_pred CCCCeEEecC-cchhhhcc-CCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEecccc
Confidence 4667888877 88888776 455677888888864 79999999999988877653 167889999999
Q ss_pred hhHHhhcCCcccccEEEEEe--CCeEEE------EEeCCCHHHHHHHHHhh
Q 032982 85 PEAAKAFDLIDVLPTFVLVK--RGKEID------RVVGAKKDELQMKTEKR 127 (129)
Q Consensus 85 ~~~~~~~~v~~~~Pt~~i~~--~G~~~~------~~~g~~~~~l~~~i~~~ 127 (129)
+++.++++++ ..|+++++. .|+... ...|..+|++.+|++..
T Consensus 116 p~~Fq~l~ln-~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~ 165 (331)
T KOG2603|consen 116 PQVFQQLNLN-NVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADR 165 (331)
T ss_pred HHHHHHhccc-CCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHh
Confidence 9999999999 999999993 333221 12233588888888753
No 190
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.18 E-value=7.6e-06 Score=46.63 Aligned_cols=57 Identities=21% Similarity=0.321 Sum_probs=41.6
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhh----cCCcccccEEEEEeCCeEEE
Q 032982 46 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKA----FDLIDVLPTFVLVKRGKEID 110 (129)
Q Consensus 46 lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~----~~v~~~~Pt~~i~~~G~~~~ 110 (129)
+..|+.+|||+|......|++. ++.+-.+|++.++...++ .|.. .+|+++ -+|+.+.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-----~i~~~~~di~~~~~~~~~~~~~~g~~-~vP~i~--i~g~~ig 61 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-----GVTFTEIRVDGDPALRDEMMQRSGRR-TVPQIF--IGDVHVG 61 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-----CCCcEEEEecCCHHHHHHHHHHhCCC-CcCEEE--ECCEEEc
Confidence 3578899999999999999862 567777788776654443 4667 899974 4665543
No 191
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.12 E-value=5.4e-05 Score=42.48 Aligned_cols=57 Identities=19% Similarity=0.481 Sum_probs=42.8
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChh----HHhhcCCcccccEEEEEeCCeEEE
Q 032982 46 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPE----AAKAFDLIDVLPTFVLVKRGKEID 110 (129)
Q Consensus 46 lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~----~~~~~~v~~~~Pt~~i~~~G~~~~ 110 (129)
++.|+.++|++|+.....|++ .++.+..+|+++.+. +.+..+-. .+|+++ .+|+.+.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-----~gi~~~~~di~~~~~~~~el~~~~g~~-~vP~v~--i~~~~iG 63 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-----KGLPYVEINIDIFPERKAELEERTGSS-VVPQIF--FNEKLVG 63 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHHhCCC-CcCEEE--ECCEEEe
Confidence 567889999999999999986 367888889987665 44445666 889874 5565544
No 192
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.04 E-value=6.2e-05 Score=44.79 Aligned_cols=51 Identities=20% Similarity=0.242 Sum_probs=37.4
Q ss_pred CCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHH----hhcCCcccccEEEEEeCCeEEE
Q 032982 52 AWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAA----KAFDLIDVLPTFVLVKRGKEID 110 (129)
Q Consensus 52 ~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~----~~~~v~~~~Pt~~i~~~G~~~~ 110 (129)
+|||+|......|.+. ++.|..+|++++++.. +..|.. .+|+++ .+|+.+.
T Consensus 25 ~~Cp~C~~ak~lL~~~-----~i~~~~~di~~~~~~~~~l~~~tg~~-tvP~vf--i~g~~iG 79 (97)
T TIGR00365 25 PQCGFSARAVQILKAC-----GVPFAYVNVLEDPEIRQGIKEYSNWP-TIPQLY--VKGEFVG 79 (97)
T ss_pred CCCchHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHhCCC-CCCEEE--ECCEEEe
Confidence 8999999999999773 5777888988776544 344656 788874 5676554
No 193
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.02 E-value=8.4e-05 Score=45.33 Aligned_cols=86 Identities=9% Similarity=0.044 Sum_probs=63.7
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHH---cCC-cEEEEEECCCChhHHhhcCCcc-cccEEEEEeCCe-EEEE-Ee
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAM---YTD-VQFIKIDVDWLPEAAKAFDLID-VLPTFVLVKRGK-EIDR-VV 113 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~---~~~-v~~~~v~~~~~~~~~~~~~v~~-~~Pt~~i~~~G~-~~~~-~~ 113 (129)
.+.+..+.|+++. .-......+.++++. +++ +.|+.+|.+......+.||+++ ..|.+.+..... ..+. ..
T Consensus 15 ~~~~~~~l~f~~~--~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~~~~~~Ky~~~~ 92 (111)
T cd03072 15 EGLPFLILFHDKD--DLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAIDSFRHMYLFPDFE 92 (111)
T ss_pred CCCCeEEEEecch--HHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEEEcchhcCcCCCCc
Confidence 4556666666222 236678889999999 987 9999999998877899999992 389988885432 2222 44
Q ss_pred CC-CHHHHHHHHHhhh
Q 032982 114 GA-KKDELQMKTEKRR 128 (129)
Q Consensus 114 g~-~~~~l~~~i~~~~ 128 (129)
+. +.+.+.+|+++.+
T Consensus 93 ~~~t~~~i~~Fv~~~~ 108 (111)
T cd03072 93 DVYVPGKLKQFVLDLH 108 (111)
T ss_pred cccCHHHHHHHHHHHh
Confidence 55 8999999999875
No 194
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.00012 Score=41.97 Aligned_cols=66 Identities=29% Similarity=0.409 Sum_probs=44.4
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCCh-----hHHhhc-CCcccccEEEEEeCCeEEEEEeCC-CHH
Q 032982 46 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP-----EAAKAF-DLIDVLPTFVLVKRGKEIDRVVGA-KKD 118 (129)
Q Consensus 46 lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~-----~~~~~~-~v~~~~Pt~~i~~~G~~~~~~~g~-~~~ 118 (129)
++.|..++||+|+.....|.+ .++.|..++++..+ +..++- |.. .+|++++ +|+.+. |. +.+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~-----~g~~~~~i~~~~~~~~~~~~~~~~~~g~~-tvP~I~i--~~~~ig---g~~d~~ 71 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR-----KGVDYEEIDVDDDEPEEAREMVKRGKGQR-TVPQIFI--GGKHVG---GCDDLD 71 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH-----cCCCcEEEEecCCcHHHHHHHHHHhCCCC-CcCEEEE--CCEEEe---CcccHH
Confidence 567889999999999999984 36777777777654 222333 677 8998764 444322 33 556
Q ss_pred HHHH
Q 032982 119 ELQM 122 (129)
Q Consensus 119 ~l~~ 122 (129)
++..
T Consensus 72 ~~~~ 75 (80)
T COG0695 72 ALEA 75 (80)
T ss_pred HHHh
Confidence 5543
No 195
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.99 E-value=0.00017 Score=42.43 Aligned_cols=92 Identities=21% Similarity=0.101 Sum_probs=66.0
Q ss_pred EEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC-cEEEEEECCCChhHHhhcCCcccccEEE
Q 032982 23 MELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFV 101 (129)
Q Consensus 23 ~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~~~~~~~~~~v~~~~Pt~~ 101 (129)
..+++.++++.. ...+++++|-|+.++|. .....+.+++..+++ +.|+.+. +..+.+++++. .|+++
T Consensus 2 ~~i~s~~~l~~~----~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~--~~~i~ 69 (97)
T cd02981 2 KELTSKEELEKF----LDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVK--PGSVV 69 (97)
T ss_pred eecCCHHHHHHH----hccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCC--CCceE
Confidence 456666666653 33677888888898887 467888888888874 8887776 45777888776 58888
Q ss_pred EEeCC-eEEEEEeCC-CHHHHHHHHHh
Q 032982 102 LVKRG-KEIDRVVGA-KKDELQMKTEK 126 (129)
Q Consensus 102 i~~~G-~~~~~~~g~-~~~~l~~~i~~ 126 (129)
+++.. .....+.|. +.+.|.+||..
T Consensus 70 l~~~~~~~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 70 LFKPFEEEPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred EeCCcccCCccCCCCCCHHHHHHHHHh
Confidence 88653 222335665 78999999864
No 196
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.97 E-value=0.00018 Score=40.33 Aligned_cols=58 Identities=22% Similarity=0.277 Sum_probs=40.9
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhh----cCCcccccEEEEEeCCeEEE
Q 032982 46 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKA----FDLIDVLPTFVLVKRGKEID 110 (129)
Q Consensus 46 lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~----~~v~~~~Pt~~i~~~G~~~~ 110 (129)
++.|+.++||+|+.....|++ .++.+..+|++.+++..++ .+....+|+++ .+|+.+.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-----~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~--i~g~~ig 63 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-----KGVDYEEIDVDGDPALREEMINRSGGRRTVPQIF--IGDVHIG 63 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-----CCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE--ECCEEEe
Confidence 567889999999999999976 2678888888877654443 34211688764 5665544
No 197
>PRK10638 glutaredoxin 3; Provisional
Probab=97.96 E-value=9.8e-05 Score=42.51 Aligned_cols=57 Identities=23% Similarity=0.303 Sum_probs=42.2
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhH----HhhcCCcccccEEEEEeCCeEEE
Q 032982 46 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEA----AKAFDLIDVLPTFVLVKRGKEID 110 (129)
Q Consensus 46 lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~----~~~~~v~~~~Pt~~i~~~G~~~~ 110 (129)
++.|..+||++|+.....|++ .++.+..+|++++++. .+..|.. .+|+++ .+|+.+.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~-----~gi~y~~~dv~~~~~~~~~l~~~~g~~-~vP~i~--~~g~~ig 64 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNS-----KGVSFQEIPIDGDAAKREEMIKRSGRT-TVPQIF--IDAQHIG 64 (83)
T ss_pred EEEEECCCChhHHHHHHHHHH-----cCCCcEEEECCCCHHHHHHHHHHhCCC-CcCEEE--ECCEEEe
Confidence 567889999999999999986 2577778888876543 3444767 899774 4676655
No 198
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.95 E-value=4.8e-05 Score=44.22 Aligned_cols=58 Identities=19% Similarity=0.270 Sum_probs=43.0
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHcCC-cEEEEEEC--CCC------------------------------hhHHhhcC
Q 032982 46 VIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDV--DWL------------------------------PEAAKAFD 92 (129)
Q Consensus 46 lv~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~--~~~------------------------------~~~~~~~~ 92 (129)
|..|+.+.||+|..+.+.+.++....++ +.+....+ ... ...++++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 4679999999999999999998765554 66655543 221 23456789
Q ss_pred CcccccEEEEEe
Q 032982 93 LIDVLPTFVLVK 104 (129)
Q Consensus 93 v~~~~Pt~~i~~ 104 (129)
+. ++|++++..
T Consensus 81 ~~-g~Pt~v~~~ 91 (98)
T cd02972 81 VT-GTPTFVVNG 91 (98)
T ss_pred CC-CCCEEEECC
Confidence 99 999998765
No 199
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=97.94 E-value=0.00038 Score=41.20 Aligned_cols=87 Identities=13% Similarity=0.124 Sum_probs=63.0
Q ss_pred chhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCcccccEEEEEeCC
Q 032982 27 SKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRG 106 (129)
Q Consensus 27 ~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G 106 (129)
..+++...+... ++.+.++.|..+. .+|..+...++++++..+++.+...+.++ ..|++.+.++|
T Consensus 6 ~~~qL~~~f~~l--~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSdkI~~~~~~~~~------------~~P~~~i~~~~ 70 (94)
T cd02974 6 LKQQLKAYLERL--ENPVELVASLDDS-EKSAELLELLEEIASLSDKITLEEDNDDE------------RKPSFSINRPG 70 (94)
T ss_pred HHHHHHHHHHhC--CCCEEEEEEeCCC-cchHHHHHHHHHHHHhCCceEEEEecCCC------------CCCEEEEecCC
Confidence 456777777543 5666676776655 99999999999999988777775544321 36999988776
Q ss_pred eEE-EEEeCC-CHHHHHHHHHhhh
Q 032982 107 KEI-DRVVGA-KKDELQMKTEKRR 128 (129)
Q Consensus 107 ~~~-~~~~g~-~~~~l~~~i~~~~ 128 (129)
+.. -++.|. ...++.++|..++
T Consensus 71 ~~~gIrF~GiP~GhEf~Slilai~ 94 (94)
T cd02974 71 EDTGIRFAGIPMGHEFTSLVLALL 94 (94)
T ss_pred CcccEEEEecCCchhHHHHHHHhC
Confidence 432 267788 8899999997653
No 200
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.88 E-value=0.00034 Score=40.96 Aligned_cols=51 Identities=16% Similarity=0.242 Sum_probs=37.1
Q ss_pred CCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHH----hhcCCcccccEEEEEeCCeEEE
Q 032982 52 AWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAA----KAFDLIDVLPTFVLVKRGKEID 110 (129)
Q Consensus 52 ~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~----~~~~v~~~~Pt~~i~~~G~~~~ 110 (129)
+|||+|+.....|.+. ++.|..+|+++++++. +..|.. .+|+++ .+|+.+.
T Consensus 21 ~~Cp~C~~ak~~L~~~-----~i~y~~idv~~~~~~~~~l~~~~g~~-tvP~vf--i~g~~iG 75 (90)
T cd03028 21 PRCGFSRKVVQILNQL-----GVDFGTFDILEDEEVRQGLKEYSNWP-TFPQLY--VNGELVG 75 (90)
T ss_pred CCCcHHHHHHHHHHHc-----CCCeEEEEcCCCHHHHHHHHHHhCCC-CCCEEE--ECCEEEe
Confidence 7999999999999874 4677888887766543 334666 899874 4676543
No 201
>PRK10824 glutaredoxin-4; Provisional
Probab=97.80 E-value=0.00017 Score=44.22 Aligned_cols=70 Identities=10% Similarity=0.165 Sum_probs=42.6
Q ss_pred HHHHHHhcCCCeEEEEEEc---CCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhh----cCCcccccEEEEEeC
Q 032982 33 SQYEASKQSDRLVVIYYTA---AWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKA----FDLIDVLPTFVLVKR 105 (129)
Q Consensus 33 ~~~~~~~~~~k~~lv~f~~---~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~----~~v~~~~Pt~~i~~~ 105 (129)
+.++..+.+++++|..=.+ ||||+|+.....|.++ ++.+..+|+++++++... -|-. .+|.++ -+
T Consensus 6 ~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~-----~i~~~~idi~~d~~~~~~l~~~sg~~-TVPQIF--I~ 77 (115)
T PRK10824 6 EKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSAC-----GERFAYVDILQNPDIRAELPKYANWP-TFPQLW--VD 77 (115)
T ss_pred HHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHc-----CCCceEEEecCCHHHHHHHHHHhCCC-CCCeEE--EC
Confidence 3455555555544332221 6999999999999875 355556677766554433 2444 677654 67
Q ss_pred CeEEE
Q 032982 106 GKEID 110 (129)
Q Consensus 106 G~~~~ 110 (129)
|+-+.
T Consensus 78 G~~IG 82 (115)
T PRK10824 78 GELVG 82 (115)
T ss_pred CEEEc
Confidence 76665
No 202
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.78 E-value=0.00026 Score=43.15 Aligned_cols=73 Identities=14% Similarity=0.055 Sum_probs=55.2
Q ss_pred hhHhhhhHHHHHHHHHcC-C-cEEEEEECCCChhHHhhcCCcc-c--ccEEEEEeCCeEEEEE-eCC-CHHHHHHHHHhh
Q 032982 55 GPCKFIEPYVKDFAAMYT-D-VQFIKIDVDWLPEAAKAFDLID-V--LPTFVLVKRGKEIDRV-VGA-KKDELQMKTEKR 127 (129)
Q Consensus 55 ~~C~~~~~~l~~~~~~~~-~-v~~~~v~~~~~~~~~~~~~v~~-~--~Pt~~i~~~G~~~~~~-~g~-~~~~l~~~i~~~ 127 (129)
..-......+.++++.++ + +.|+.+|.++.....+.||+++ . .|.+.+...+..-+.. ... +.+.|.+|+++.
T Consensus 31 ~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 31 KGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKGKKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred hHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCCCccCCCcccCCHHHHHHHHHHh
Confidence 334668889999999999 5 9999999998877889999982 2 8998888632222222 234 778999999875
No 203
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.0002 Score=55.43 Aligned_cols=79 Identities=16% Similarity=0.268 Sum_probs=60.3
Q ss_pred HHHHHhcCCCeEEEEEEcCCChhHhhhhHHH---HHHHHHcCC-cEEEEEECCCChhHHhhc-------CCcccccEEEE
Q 032982 34 QYEASKQSDRLVVIYYTAAWCGPCKFIEPYV---KDFAAMYTD-VQFIKIDVDWLPEAAKAF-------DLIDVLPTFVL 102 (129)
Q Consensus 34 ~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l---~~~~~~~~~-v~~~~v~~~~~~~~~~~~-------~v~~~~Pt~~i 102 (129)
.+.++..++||++|.+..+||-.|+.|...- .++++.+.. ..-++||-++-|++-+.| ...|+.|-.+|
T Consensus 35 Af~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPLtVf 114 (667)
T COG1331 35 AFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWPLTVF 114 (667)
T ss_pred HHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCceeEE
Confidence 4667778999999999999999999988755 556666543 778888888887765544 33469996666
Q ss_pred E-eCCeEEEEE
Q 032982 103 V-KRGKEIDRV 112 (129)
Q Consensus 103 ~-~~G~~~~~~ 112 (129)
. .+|++....
T Consensus 115 LTPd~kPFfag 125 (667)
T COG1331 115 LTPDGKPFFAG 125 (667)
T ss_pred ECCCCceeeee
Confidence 6 799987654
No 204
>PTZ00062 glutaredoxin; Provisional
Probab=97.70 E-value=0.00047 Score=46.47 Aligned_cols=74 Identities=11% Similarity=0.170 Sum_probs=49.1
Q ss_pred hHHHHHHHHHhcCCCeEEEEE---EcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhh----cCCcccccEEE
Q 032982 29 HQWRSQYEASKQSDRLVVIYY---TAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKA----FDLIDVLPTFV 101 (129)
Q Consensus 29 ~~~~~~~~~~~~~~k~~lv~f---~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~----~~v~~~~Pt~~ 101 (129)
++..+.+++.+++++++|..= +.|+|++|+.....|.+. ++.+..+|+++.++..+. .|-. .+|+++
T Consensus 100 ~~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~-----~i~y~~~DI~~d~~~~~~l~~~sg~~-TvPqVf 173 (204)
T PTZ00062 100 EDTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSS-----GVKYETYNIFEDPDLREELKVYSNWP-TYPQLY 173 (204)
T ss_pred HHHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHc-----CCCEEEEEcCCCHHHHHHHHHHhCCC-CCCeEE
Confidence 345666766666666555544 347999999998888863 677888898877654432 2444 667665
Q ss_pred EEeCCeEEE
Q 032982 102 LVKRGKEID 110 (129)
Q Consensus 102 i~~~G~~~~ 110 (129)
-+|+.+.
T Consensus 174 --I~G~~IG 180 (204)
T PTZ00062 174 --VNGELIG 180 (204)
T ss_pred --ECCEEEc
Confidence 5676655
No 205
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.67 E-value=0.00017 Score=53.51 Aligned_cols=57 Identities=21% Similarity=0.356 Sum_probs=42.5
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHH---hh---------cCCcccccEEEEEeCCeEEE
Q 032982 46 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAA---KA---------FDLIDVLPTFVLVKRGKEID 110 (129)
Q Consensus 46 lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~---~~---------~~v~~~~Pt~~i~~~G~~~~ 110 (129)
|+.|..+|||+|+.....|.+ .++.+-.+|+++.+... ++ .|.. .+|++++ +|+.+.
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~-----~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~-tvP~ifi--~~~~ig 72 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGA-----NDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIR-TVPQIFV--GDVHIG 72 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-----CCCCeEEEECCCChhHHHHHHHHhhccccccCCCC-ccCeEEE--CCEEEe
Confidence 667899999999999998887 36888899998766322 22 3666 8999865 565544
No 206
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.67 E-value=0.0021 Score=39.61 Aligned_cols=99 Identities=17% Similarity=0.166 Sum_probs=60.2
Q ss_pred eEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHH-H---HcCCcEEEEEECC-----CChhHHhhcC
Q 032982 22 VMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFA-A---MYTDVQFIKIDVD-----WLPEAAKAFD 92 (129)
Q Consensus 22 ~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~-~---~~~~v~~~~v~~~-----~~~~~~~~~~ 92 (129)
.+.+++ -+|+ +.+...+.++|.|=..+ |+ -+-...+.+++ + .-+++-++.|.+. +|.+++++|+
T Consensus 6 ~v~LD~-~tFd----Kvi~kf~~~LVKFD~ay-Py-GeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~ 78 (126)
T PF07912_consen 6 CVPLDE-LTFD----KVIPKFKYVLVKFDVAY-PY-GEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYK 78 (126)
T ss_dssp SEEEST-THHH----HHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT
T ss_pred eeeccc-eehh----heeccCceEEEEEeccC-CC-cchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhC
Confidence 445555 3444 44557899999994322 11 22234455555 2 2335888988775 5789999999
Q ss_pred Ccc-cccEEEEEeCCe-EEEEE--eCC-CHHHHHHHHHhh
Q 032982 93 LID-VLPTFVLVKRGK-EIDRV--VGA-KKDELQMKTEKR 127 (129)
Q Consensus 93 v~~-~~Pt~~i~~~G~-~~~~~--~g~-~~~~l~~~i~~~ 127 (129)
+.. .+|.+.+|.+|. ..-++ .+. +.+.|++|+.+.
T Consensus 79 i~ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 79 IDKEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp -SCCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHT
T ss_pred CCcccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhC
Confidence 952 689999997433 22234 565 899999999875
No 207
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=97.55 E-value=0.0012 Score=42.62 Aligned_cols=75 Identities=24% Similarity=0.173 Sum_probs=50.0
Q ss_pred CCCeEEEEEE-cCCChhHhhh-hHHHHHHHHHcC--Cc-EEEEEECCC-----------------------ChhHHhhcC
Q 032982 41 SDRLVVIYYT-AAWCGPCKFI-EPYVKDFAAMYT--DV-QFIKIDVDW-----------------------LPEAAKAFD 92 (129)
Q Consensus 41 ~~k~~lv~f~-~~~c~~C~~~-~~~l~~~~~~~~--~v-~~~~v~~~~-----------------------~~~~~~~~~ 92 (129)
.+++++|+|| ..|||.|... .+.|.+...++. ++ .++.+..|. ...+++.||
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~~~f~lLsD~~~~~~~~yg 107 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGAKDKIRFLADGNGEFTKALG 107 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCCCcEEEEECCCHHHHHHcC
Confidence 4555555555 8999999998 999988888875 36 588887652 335667777
Q ss_pred Ccc-----c-----ccEEEEEeCCeEEEEEeCC
Q 032982 93 LID-----V-----LPTFVLVKRGKEIDRVVGA 115 (129)
Q Consensus 93 v~~-----~-----~Pt~~i~~~G~~~~~~~g~ 115 (129)
+.. + ....+++++|++.......
T Consensus 108 v~~~~~~~~~~~~~~R~~fiId~g~I~~~~~~~ 140 (155)
T cd03013 108 LTLDLSAAGGGIRSKRYALIVDDGKVKYLFVEE 140 (155)
T ss_pred CCccccccCCcceeeeEEEEECCCEEEEEEEec
Confidence 730 1 2344555688887755443
No 208
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.55 E-value=0.0013 Score=50.22 Aligned_cols=87 Identities=13% Similarity=0.173 Sum_probs=63.3
Q ss_pred chhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCcccccEEEEEeCC
Q 032982 27 SKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRG 106 (129)
Q Consensus 27 ~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G 106 (129)
..+++...+... ++.+.++.| .+.|..|.++...++++++.-+++.+-..+.+ . ..|++.+.++|
T Consensus 6 ~~~~l~~~~~~~--~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~-----------~-~~p~~~~~~~~ 70 (517)
T PRK15317 6 LKTQLKQYLELL--ERPIELVAS-LDDSEKSAELKELLEEIASLSDKITVEEDSLD-----------V-RKPSFSITRPG 70 (517)
T ss_pred HHHHHHHHHHhC--CCCEEEEEE-eCCCchHHHHHHHHHHHHHhCCceEEEEccCC-----------C-CCCEEEEEcCC
Confidence 456667766543 455555545 55899999999999999999877777553321 4 58999888776
Q ss_pred eEEE-EEeCC-CHHHHHHHHHhhh
Q 032982 107 KEID-RVVGA-KKDELQMKTEKRR 128 (129)
Q Consensus 107 ~~~~-~~~g~-~~~~l~~~i~~~~ 128 (129)
+... ++.|. ..+++.+||..++
T Consensus 71 ~~~~i~f~g~P~g~Ef~s~i~~i~ 94 (517)
T PRK15317 71 EDTGVRFAGIPMGHEFTSLVLALL 94 (517)
T ss_pred ccceEEEEecCccHHHHHHHHHHH
Confidence 5433 67788 8899999998765
No 209
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.53 E-value=0.0014 Score=49.92 Aligned_cols=88 Identities=13% Similarity=0.179 Sum_probs=64.8
Q ss_pred chhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCcccccEEEEEeCC
Q 032982 27 SKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRG 106 (129)
Q Consensus 27 ~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G 106 (129)
..+++...+... ++.+.++.|.. .|.+|.++...++++++.-+++.+...+.+ .. ..|++.+..+|
T Consensus 6 ~~~~l~~~~~~~--~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~s~ki~~~~~~~~----------~~-~~p~~~~~~~~ 71 (515)
T TIGR03140 6 LLAQLKSYLASL--ENPVTLVLSAG-SHEKSKELLELLDEIASLSDKISLTQNTAD----------TL-RKPSFTILRDG 71 (515)
T ss_pred HHHHHHHHHHhc--CCCEEEEEEeC-CCchhHHHHHHHHHHHHhCCCeEEEEecCC----------cC-CCCeEEEecCC
Confidence 456777777643 55565555555 799999999999999998877777554432 24 67999888777
Q ss_pred eEE-EEEeCC-CHHHHHHHHHhhh
Q 032982 107 KEI-DRVVGA-KKDELQMKTEKRR 128 (129)
Q Consensus 107 ~~~-~~~~g~-~~~~l~~~i~~~~ 128 (129)
+.. -++.|. ...++.+||..++
T Consensus 72 ~~~~i~f~g~P~g~Ef~s~i~~i~ 95 (515)
T TIGR03140 72 ADTGIRFAGIPGGHEFTSLVLAIL 95 (515)
T ss_pred cccceEEEecCCcHHHHHHHHHHH
Confidence 533 367788 8899999998765
No 210
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.00086 Score=46.14 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=27.3
Q ss_pred HHhhcCCcccccEEEEEeCCeEEEEEeCC-CHHHHHHHHHhhh
Q 032982 87 AAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKRR 128 (129)
Q Consensus 87 ~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~-~~~~l~~~i~~~~ 128 (129)
+++++|+. ++|++++..+ .+.|. +.+++.+.|+..+
T Consensus 207 ~a~~~gv~-gTPt~~v~~~-----~~~g~~~~~~l~~~i~~~~ 243 (244)
T COG1651 207 LAQQLGVN-GTPTFIVNGK-----LVPGLPDLDELKAIIDEAL 243 (244)
T ss_pred HHHhcCCC-cCCeEEECCe-----eecCCCCHHHHHHHHHHhh
Confidence 45578999 9999975443 55677 7899999988764
No 211
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=97.44 E-value=0.0033 Score=41.43 Aligned_cols=33 Identities=21% Similarity=0.489 Sum_probs=27.8
Q ss_pred EEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEE
Q 032982 45 VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFI 77 (129)
Q Consensus 45 ~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~ 77 (129)
.|.+|+..-||+|-...+.+.++.+.++++.+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~ 33 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIE 33 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEE
Confidence 367889999999999999999999999663333
No 212
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0016 Score=39.29 Aligned_cols=58 Identities=22% Similarity=0.351 Sum_probs=37.1
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHcC-CcEEEEEECCCCh-hHHhhc----CCcccccEEEEEeCCeEEE
Q 032982 46 VIYYTAAWCGPCKFIEPYVKDFAAMYT-DVQFIKIDVDWLP-EAAKAF----DLIDVLPTFVLVKRGKEID 110 (129)
Q Consensus 46 lv~f~~~~c~~C~~~~~~l~~~~~~~~-~v~~~~v~~~~~~-~~~~~~----~v~~~~Pt~~i~~~G~~~~ 110 (129)
+|.|..+||++|+.....|.+ ++ ...++.+|-+++. ++.+.+ |-. .+|.++ -+|+-+.
T Consensus 16 VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~-tvP~vF--I~Gk~iG 79 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQR-TVPNVF--IGGKFIG 79 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCC-CCCEEE--ECCEEEc
Confidence 345899999999998888877 22 3566666665443 333322 334 677754 5776654
No 213
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=97.25 E-value=0.019 Score=36.26 Aligned_cols=94 Identities=13% Similarity=0.249 Sum_probs=64.0
Q ss_pred HHHHHHHH----hcCCCeEEEEEEcCCCh----hHhhh--hHHHHHHHHHcCCcEEEEEECCCCh---------------
Q 032982 31 WRSQYEAS----KQSDRLVVIYYTAAWCG----PCKFI--EPYVKDFAAMYTDVQFIKIDVDWLP--------------- 85 (129)
Q Consensus 31 ~~~~~~~~----~~~~k~~lv~f~~~~c~----~C~~~--~~~l~~~~~~~~~v~~~~v~~~~~~--------------- 85 (129)
+.+.++.+ .++.|+.+|+.+++.-+ .|+.. .+.+.++-+ .++.++.-|+....
T Consensus 6 ~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~--~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~ 83 (136)
T cd02990 6 LEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLS--QNFITWGWDMTKESNKARFLSSCTRHFGS 83 (136)
T ss_pred HHHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHH--cCEEEEeeeccchhhhhHHHHhhhhhhhH
Confidence 44556655 67899999999998764 44442 233344443 24888888887542
Q ss_pred ---hHHhhcCCcccccEEEEEe-CC---eEEEEEeCC-CHHHHHHHHHhh
Q 032982 86 ---EAAKAFDLIDVLPTFVLVK-RG---KEIDRVVGA-KKDELQMKTEKR 127 (129)
Q Consensus 86 ---~~~~~~~v~~~~Pt~~i~~-~G---~~~~~~~g~-~~~~l~~~i~~~ 127 (129)
...+.++.. .+|.+.++. .. .++.+..|. +++++.+.+...
T Consensus 84 ~a~~~~~~~~~~-~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ 132 (136)
T cd02990 84 VAAQTIRNIKTD-QLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEA 132 (136)
T ss_pred HHHHHHHhcCcC-CCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHH
Confidence 234567788 999877773 22 577889999 899998877654
No 214
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=96.94 E-value=0.0032 Score=41.48 Aligned_cols=32 Identities=22% Similarity=0.493 Sum_probs=24.5
Q ss_pred EEEcCCChhHhhhhHHHHHHHHHcCC-cEEEEE
Q 032982 48 YYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKI 79 (129)
Q Consensus 48 ~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v 79 (129)
+|..|.|+.|-...|.+.++..++++ +.+-.+
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i 34 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFI 34 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEE
Confidence 68999999999999999999999986 444433
No 215
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.88 E-value=0.036 Score=33.01 Aligned_cols=95 Identities=15% Similarity=0.080 Sum_probs=61.6
Q ss_pred eEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcC-CcEEEEEECCCChhHHhhcCCcccccEE
Q 032982 22 VMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYT-DVQFIKIDVDWLPEAAKAFDLIDVLPTF 100 (129)
Q Consensus 22 ~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~-~v~~~~v~~~~~~~~~~~~~v~~~~Pt~ 100 (129)
+..|++.+++++.+.. ++.+++|-|+..--. .....+.+++..++ ++.|+... .+.+.+.+++. .|.+
T Consensus 2 v~~i~~~~~~e~~~~~---~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~~--~~~i 70 (102)
T cd03066 2 VEIINSERELQAFENI---EDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---DSKVAKKLGLK--MNEV 70 (102)
T ss_pred ceEcCCHHHHHHHhcc---cCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---cHHHHHHcCCC--CCcE
Confidence 4567777777665520 355666666655333 35677888888885 48885544 45667888776 6888
Q ss_pred EEEeC-CeEEEEE-eCC-CHHHHHHHHHhh
Q 032982 101 VLVKR-GKEIDRV-VGA-KKDELQMKTEKR 127 (129)
Q Consensus 101 ~i~~~-G~~~~~~-~g~-~~~~l~~~i~~~ 127 (129)
+++++ ......+ .|. +.+.|.+||...
T Consensus 71 ~l~~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 71 DFYEPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred EEeCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 88854 2222234 556 899999999764
No 216
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.02 Score=36.80 Aligned_cols=90 Identities=16% Similarity=0.269 Sum_probs=61.3
Q ss_pred hcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC--cEEEEEECCC--------ChhH---H-hhcCCc----------
Q 032982 39 KQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDW--------LPEA---A-KAFDLI---------- 94 (129)
Q Consensus 39 ~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~--v~~~~v~~~~--------~~~~---~-~~~~v~---------- 94 (129)
...+|++||.=.|+.|+.-- ....|+.+.++|.+ +.++..-+.+ +.++ | ..|||+
T Consensus 22 ~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~YgVtFp~f~Ki~Vn 100 (162)
T COG0386 22 DYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNYGVTFPMFSKIDVN 100 (162)
T ss_pred HhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhccCceeeeeeEEeec
Confidence 34899999999999999865 45667777777765 5555554431 1122 1 234433
Q ss_pred --------------------c-----cccEEEEEeCCeEEEEEeCC-CHHHHHHHHHhhhC
Q 032982 95 --------------------D-----VLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKRRN 129 (129)
Q Consensus 95 --------------------~-----~~Pt~~i~~~G~~~~~~~g~-~~~~l~~~i~~~~~ 129 (129)
+ .+--+++.++|+++.|+... +++++...|+++++
T Consensus 101 G~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~ 161 (162)
T COG0386 101 GKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLLA 161 (162)
T ss_pred CCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHhc
Confidence 0 12236667899999999877 88999888888764
No 217
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.67 E-value=0.025 Score=36.76 Aligned_cols=64 Identities=22% Similarity=0.126 Sum_probs=50.0
Q ss_pred hhhHHHHHHHHHcCC-cEEEEEECCCChhHHhhcCCcccccEEEEEeCC-eEEEEEeC--CCHHHHHHHHHhh
Q 032982 59 FIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRG-KEIDRVVG--AKKDELQMKTEKR 127 (129)
Q Consensus 59 ~~~~~l~~~~~~~~~-v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G-~~~~~~~g--~~~~~l~~~i~~~ 127 (129)
.....+.++++.+.+ +.|+.+. ++++++++++. . |++++++.+ .....+.| .+.++|.+||...
T Consensus 7 ~~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~-~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~ 74 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIK-E-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKN 74 (184)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCS-S-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCC-C-CcEEEeccCCCCceecccccCCHHHHHHHHHHh
Confidence 356778899999985 9999988 67889999999 7 999999863 22334555 3899999999875
No 218
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=96.58 E-value=0.016 Score=32.53 Aligned_cols=56 Identities=21% Similarity=0.195 Sum_probs=47.0
Q ss_pred EEEEEEcCCChhHhhhhHHHHHHHHHcC-C-cEEEEEECCCChhHHhhcCCcccccEEE
Q 032982 45 VVIYYTAAWCGPCKFIEPYVKDFAAMYT-D-VQFIKIDVDWLPEAAKAFDLIDVLPTFV 101 (129)
Q Consensus 45 ~lv~f~~~~c~~C~~~~~~l~~~~~~~~-~-v~~~~v~~~~~~~~~~~~~v~~~~Pt~~ 101 (129)
.+..|-+...+.+......+.++-+++- + +.+-.+|+.++|++++.++|. ++||++
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~iv-AtPtLv 60 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIV-ATPTLV 60 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEE-Eechhh
Confidence 4555667777999998888888777764 3 899999999999999999999 999976
No 219
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=96.51 E-value=0.016 Score=40.26 Aligned_cols=58 Identities=14% Similarity=0.083 Sum_probs=41.3
Q ss_pred hcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCcccccEEEEE
Q 032982 39 KQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 103 (129)
Q Consensus 39 ~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~ 103 (129)
...+|+.+++..+.|||+|...+=.|--...+|.++.+.....+. .+....+|++++.
T Consensus 55 ~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~~l~~~~S~~-------~d~~pn~Ptl~F~ 112 (249)
T PF06053_consen 55 APNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNFSLEYHYSDP-------YDNYPNTPTLIFN 112 (249)
T ss_pred CCCCeeEEEEEecccCccchhhHHHHHHHHHhcCCeeeEEeecCc-------ccCCCCCCeEEEe
Confidence 458999999999999999999888887777888777333333222 2222268877665
No 220
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=96.19 E-value=0.1 Score=32.94 Aligned_cols=75 Identities=13% Similarity=0.220 Sum_probs=55.5
Q ss_pred CCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCc---ccccEEEEEeCCeEEEEEeCC-CH
Q 032982 42 DRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLI---DVLPTFVLVKRGKEIDRVVGA-KK 117 (129)
Q Consensus 42 ~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~---~~~Pt~~i~~~G~~~~~~~g~-~~ 117 (129)
...-++.+++|.|+=|+.....++. .++.+-.+..+....+.+++||. ++-=|.+ -+|..++ |. .+
T Consensus 24 ~~~~~~vyksPnCGCC~~w~~~mk~-----~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~V--I~Gy~vE---GHVPa 93 (149)
T COG3019 24 QATEMVVYKSPNCGCCDEWAQHMKA-----NGFEVKVVETDDFLALKRRLGIPYEMQSCHTAV--INGYYVE---GHVPA 93 (149)
T ss_pred ceeeEEEEeCCCCccHHHHHHHHHh-----CCcEEEEeecCcHHHHHHhcCCChhhccccEEE--EcCEEEe---ccCCH
Confidence 3355778999999999988777763 36888888888888888999987 2333554 4676655 55 78
Q ss_pred HHHHHHHHh
Q 032982 118 DELQMKTEK 126 (129)
Q Consensus 118 ~~l~~~i~~ 126 (129)
+.+..++.+
T Consensus 94 ~aI~~ll~~ 102 (149)
T COG3019 94 EAIARLLAE 102 (149)
T ss_pred HHHHHHHhC
Confidence 888877754
No 221
>PHA03075 glutaredoxin-like protein; Provisional
Probab=96.13 E-value=0.011 Score=35.94 Aligned_cols=36 Identities=17% Similarity=0.576 Sum_probs=28.9
Q ss_pred CeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEEC
Q 032982 43 RLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDV 81 (129)
Q Consensus 43 k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~ 81 (129)
|.++|.|..|.|+-|+.....+.++..+| .+.+||+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY---~ilrVNI 37 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY---DILRVNI 37 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc---cEEEEEe
Confidence 56899999999999999999998887766 4444443
No 222
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=95.97 E-value=0.16 Score=30.38 Aligned_cols=98 Identities=10% Similarity=0.081 Sum_probs=62.9
Q ss_pred EEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC-cEEEEEECCC--ChhHHhhcCCc-cccc
Q 032982 23 MELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDW--LPEAAKAFDLI-DVLP 98 (129)
Q Consensus 23 ~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~--~~~~~~~~~v~-~~~P 98 (129)
..|++..+|.+++. ...-++|.| +..-..-......+.+++....+ -.++.||+.. ...+|+++.+. +.-|
T Consensus 4 e~i~d~KdfKKLLR----Tr~NVLvLy-~ks~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp 78 (112)
T cd03067 4 EDISDHKDFKKLLR----TRNNVLVLY-SKSAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKP 78 (112)
T ss_pred ccccchHHHHHHHh----hcCcEEEEE-ecchhhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCC
Confidence 45677777777663 333444444 44444445566688888888877 7777788775 67899999876 1223
Q ss_pred ---EEEEEeCCeEEEEEeCC-CHHHHHHHHH
Q 032982 99 ---TFVLVKRGKEIDRVVGA-KKDELQMKTE 125 (129)
Q Consensus 99 ---t~~i~~~G~~~~~~~g~-~~~~l~~~i~ 125 (129)
.+.=|++|.-...+... +...+..|+.
T Consensus 79 ~~~~LkHYKdG~fHkdYdR~~t~kSmv~Flr 109 (112)
T cd03067 79 KPVELKHYKDGDFHTEYNRQLTFKSMVAFLR 109 (112)
T ss_pred CcchhhcccCCCccccccchhhHHHHHHHhh
Confidence 34446899765555544 6667766654
No 223
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=95.89 E-value=0.013 Score=35.06 Aligned_cols=74 Identities=14% Similarity=0.162 Sum_probs=43.1
Q ss_pred EEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCCh----hHHhhcCCccccc-EEEEEeCCeEEEE-----EeCCC
Q 032982 47 IYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP----EAAKAFDLIDVLP-TFVLVKRGKEIDR-----VVGAK 116 (129)
Q Consensus 47 v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~----~~~~~~~v~~~~P-t~~i~~~G~~~~~-----~~g~~ 116 (129)
..|+.++|++|+.....|++ .++.|-.+|+.+.+ ++.+-++-. +.+ .-++-.+|..... ..+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-----~~i~~~~idi~~~~~~~~~l~~~~~~~-~~~~~~li~~~~~~~~~l~~~~~~~ls 75 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEE-----HGIEYEFIDYLKEPPTKEELKELLAKL-GLGVEDLFNTRGTPYRKLGLADKDELS 75 (105)
T ss_pred EEEECCCCHHHHHHHHHHHH-----cCCCcEEEeeccCCCCHHHHHHHHHhc-CCCHHHHHhcCCchHHHcCCccccCCC
Confidence 46889999999999888877 36777777776533 333333333 222 2222234433221 22347
Q ss_pred HHHHHHHHHh
Q 032982 117 KDELQMKTEK 126 (129)
Q Consensus 117 ~~~l~~~i~~ 126 (129)
.+++.+++.+
T Consensus 76 ~~e~~~~l~~ 85 (105)
T cd02977 76 DEEALELMAE 85 (105)
T ss_pred HHHHHHHHHh
Confidence 7777777755
No 224
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.19 Score=33.56 Aligned_cols=86 Identities=21% Similarity=0.276 Sum_probs=58.2
Q ss_pred CCeEEEEEE-cCCChhHhhhhHHHHHHHHHcC--CcEEEEEECCC----------------------------ChhHHhh
Q 032982 42 DRLVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVDW----------------------------LPEAAKA 90 (129)
Q Consensus 42 ~k~~lv~f~-~~~c~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~----------------------------~~~~~~~ 90 (129)
+|++++.|| ++.-+-|-.....+.+...++. ++.++.+.+|. ..++++.
T Consensus 33 gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ 112 (194)
T COG0450 33 GKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARA 112 (194)
T ss_pred CcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHH
Confidence 489999998 6677777777777777776665 38888887753 4468889
Q ss_pred cCCcc---ccc---EEEEEeCCeEEEEEe-----CCCHHHHHHHHHhh
Q 032982 91 FDLID---VLP---TFVLVKRGKEIDRVV-----GAKKDELQMKTEKR 127 (129)
Q Consensus 91 ~~v~~---~~P---t~~i~~~G~~~~~~~-----g~~~~~l~~~i~~~ 127 (129)
||+-. +.. +++|..+|.+..-.. |.+.+++.+.|+.+
T Consensus 113 ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAl 160 (194)
T COG0450 113 YGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDAL 160 (194)
T ss_pred cCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHH
Confidence 98861 222 566667888654332 44677777777653
No 225
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=95.78 E-value=0.24 Score=33.56 Aligned_cols=90 Identities=21% Similarity=0.288 Sum_probs=58.9
Q ss_pred hcCCCeEEEEEEcCCCh-hHhhhhHHHHHHHHHcC-----CcEEEEEECCCC---h------------------------
Q 032982 39 KQSDRLVVIYYTAAWCG-PCKFIEPYVKDFAAMYT-----DVQFIKIDVDWL---P------------------------ 85 (129)
Q Consensus 39 ~~~~k~~lv~f~~~~c~-~C~~~~~~l~~~~~~~~-----~v~~~~v~~~~~---~------------------------ 85 (129)
...+++++|.|.=..|| -|-.+...+.++.++.. +++++.+.+|.. +
T Consensus 64 ~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~ltg~~~~ 143 (207)
T COG1999 64 DLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIGLTGTPEQ 143 (207)
T ss_pred ccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeeeeeCCHHH
Confidence 44799999999877775 58888887877776665 266776666532 1
Q ss_pred --hHHhhcCCcc--------------cccEEEEE-eCCeEEEEEeCC-CHHHHHHHHHhhh
Q 032982 86 --EAAKAFDLID--------------VLPTFVLV-KRGKEIDRVVGA-KKDELQMKTEKRR 128 (129)
Q Consensus 86 --~~~~~~~v~~--------------~~Pt~~i~-~~G~~~~~~~g~-~~~~l~~~i~~~~ 128 (129)
+++++|++.. ....++++ .+|+....+.+. +++++.+.+++++
T Consensus 144 ~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~ 204 (207)
T COG1999 144 IEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLL 204 (207)
T ss_pred HHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHh
Confidence 2334444430 12233333 589988887776 7888888887765
No 226
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=95.70 E-value=0.061 Score=31.28 Aligned_cols=76 Identities=16% Similarity=0.228 Sum_probs=57.7
Q ss_pred CeEEEEEEcCCChhHhhhhHHHHHHHHH-cCC-cEEEEEECCCChhHHhhcCCcccccEEEEEeCCeEEEEEeCC--CHH
Q 032982 43 RLVVIYYTAAWCGPCKFIEPYVKDFAAM-YTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA--KKD 118 (129)
Q Consensus 43 k~~lv~f~~~~c~~C~~~~~~l~~~~~~-~~~-v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~--~~~ 118 (129)
.+++=.|.+..-+.++.....+.++-+. +++ +.+-.+|+.++|++++.+.+- ++||++-.. -.+..++.|. +.+
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~Iv-ATPtLIK~~-P~P~rriiGdls~~~ 80 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKIL-ATPTLSKIL-PPPVRKIIGDLSDRE 80 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEE-EecHHhhcC-CCCcceeeccccchH
Confidence 3455566788899999988888887655 445 888889999999999999999 999965332 3356677776 445
Q ss_pred HH
Q 032982 119 EL 120 (129)
Q Consensus 119 ~l 120 (129)
++
T Consensus 81 ~v 82 (87)
T TIGR02654 81 RV 82 (87)
T ss_pred HH
Confidence 44
No 227
>PRK09301 circadian clock protein KaiB; Provisional
Probab=95.70 E-value=0.11 Score=31.21 Aligned_cols=78 Identities=14% Similarity=0.225 Sum_probs=60.1
Q ss_pred CCeEEEEEEcCCChhHhhhhHHHHHHHHH-cCC-cEEEEEECCCChhHHhhcCCcccccEEEEEeCCeEEEEEeCC--CH
Q 032982 42 DRLVVIYYTAAWCGPCKFIEPYVKDFAAM-YTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA--KK 117 (129)
Q Consensus 42 ~k~~lv~f~~~~c~~C~~~~~~l~~~~~~-~~~-v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~--~~ 117 (129)
...++=.|.+..-+.++.....+.++-+. +++ +.+-.+|+.++|++++.+.|. ++||++-.. -.+..++.|. +.
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~Iv-ATPTLIK~~-P~P~rriiGDlsd~ 82 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKIL-ATPTLAKIL-PPPVRKIIGDLSDR 82 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeE-EecHHhhcC-CCCcceeecccccH
Confidence 45666677799999999999999887665 445 888889999999999999999 999965332 3456677776 45
Q ss_pred HHHH
Q 032982 118 DELQ 121 (129)
Q Consensus 118 ~~l~ 121 (129)
+++.
T Consensus 83 ~kVL 86 (103)
T PRK09301 83 EKVL 86 (103)
T ss_pred HHHH
Confidence 5553
No 228
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=95.67 E-value=0.17 Score=28.18 Aligned_cols=71 Identities=11% Similarity=0.192 Sum_probs=42.5
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCC--ChhHHhhcCCcccccEEEEEe--CCeEEEEEeCCCHHHHH
Q 032982 46 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW--LPEAAKAFDLIDVLPTFVLVK--RGKEIDRVVGAKKDELQ 121 (129)
Q Consensus 46 lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~--~~~~~~~~~v~~~~Pt~~i~~--~G~~~~~~~g~~~~~l~ 121 (129)
+..|+.+.||+|+..+-.+... ++.+-.++++. ..++ +.-+.. .+|+++.-. +|..+. +...+.
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~-----gi~y~~~~~~~~~~~~~-~~~~~~-~vP~l~~~~~~~~~~l~-----eS~~I~ 69 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH-----GIPYEVVEVNPVSRKEI-KWSSYK-KVPILRVESGGDGQQLV-----DSSVII 69 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC-----CCceEEEECCchhHHHH-HHhCCC-ccCEEEECCCCCccEEE-----cHHHHH
Confidence 3467889999999998777663 44444444442 2233 223444 899887552 344332 455666
Q ss_pred HHHHhhh
Q 032982 122 MKTEKRR 128 (129)
Q Consensus 122 ~~i~~~~ 128 (129)
+++++.+
T Consensus 70 ~yL~~~~ 76 (77)
T cd03040 70 STLKTYL 76 (77)
T ss_pred HHHHHHc
Confidence 7776655
No 229
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=95.66 E-value=0.093 Score=33.62 Aligned_cols=57 Identities=21% Similarity=0.378 Sum_probs=38.7
Q ss_pred EEEEEcC------CChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHH----hhcCC----cccccEEEEEeCCeEEE
Q 032982 46 VIYYTAA------WCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAA----KAFDL----IDVLPTFVLVKRGKEID 110 (129)
Q Consensus 46 lv~f~~~------~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~----~~~~v----~~~~Pt~~i~~~G~~~~ 110 (129)
|+.|.++ +|++|......|+++ ++.|..+|++.+++.. +.++- . .+|.++ -+|+.+.
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~-----~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~-tvPqVF--I~G~~IG 72 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF-----RVKFDERDVSMDSGFREELRELLGAELKAV-SLPRVF--VDGRYLG 72 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCCCC-CCCEEE--ECCEEEe
Confidence 3445566 899999999998773 5888889998765433 33443 4 677765 4565544
No 230
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=95.48 E-value=0.16 Score=27.81 Aligned_cols=58 Identities=19% Similarity=0.166 Sum_probs=35.3
Q ss_pred EEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCC-hhHHhhcCCcccccEEEEEeCCeEE
Q 032982 47 IYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL-PEAAKAFDLIDVLPTFVLVKRGKEI 109 (129)
Q Consensus 47 v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~-~~~~~~~~v~~~~Pt~~i~~~G~~~ 109 (129)
+.|+.+||++|+...-.+....- .+.+..+|.... +++.+..... .+|++.. .+|..+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl---~~e~~~v~~~~~~~~~~~~np~~-~vP~L~~-~~g~~l 60 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI---TVELREVELKNKPAEMLAASPKG-TVPVLVL-GNGTVI 60 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC---CcEEEEeCCCCCCHHHHHHCCCC-CCCEEEE-CCCcEE
Confidence 35678999999988777766332 245556665432 3444443444 8999853 346543
No 231
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=95.46 E-value=0.21 Score=27.95 Aligned_cols=69 Identities=10% Similarity=0.096 Sum_probs=39.5
Q ss_pred EEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCC----hhHHhhcCCcccccEEEEEeCCeEEEEEeCCCHHHHHH
Q 032982 47 IYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL----PEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQM 122 (129)
Q Consensus 47 v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~----~~~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~~~~~l~~ 122 (129)
..++.++|++|+...-.+... ++.+-.++++.. +++.+.-+-. .+|+++...+|..+. ....+.+
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~-----gi~y~~~~v~~~~~~~~~~~~~~p~~-~vP~l~~~~~~~~l~-----es~~I~~ 71 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTEL-----ELDVILYPCPKGSPKRDKFLEKGGKV-QVPYLVDPNTGVQMF-----ESADIVK 71 (77)
T ss_pred eEecCCCCchHHHHHHHHHHc-----CCcEEEEECCCChHHHHHHHHhCCCC-cccEEEeCCCCeEEE-----cHHHHHH
Confidence 356778999999887777663 454555555533 2222222333 899875433453322 4555666
Q ss_pred HHHh
Q 032982 123 KTEK 126 (129)
Q Consensus 123 ~i~~ 126 (129)
++++
T Consensus 72 yL~~ 75 (77)
T cd03041 72 YLFK 75 (77)
T ss_pred HHHH
Confidence 6654
No 232
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.063 Score=30.23 Aligned_cols=57 Identities=14% Similarity=0.311 Sum_probs=37.7
Q ss_pred EEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCC--------------h--hHHhhcCCcccccEEEEEeCCeEE
Q 032982 47 IYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL--------------P--EAAKAFDLIDVLPTFVLVKRGKEI 109 (129)
Q Consensus 47 v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~--------------~--~~~~~~~v~~~~Pt~~i~~~G~~~ 109 (129)
+.|++.-||.|......|+++. +.+-.|++.+. + +-.+..|.- ++|.+++.++..++
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~-----v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyi-GIPall~~d~~vVl 77 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN-----VDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYI-GIPALLTDDGKVVL 77 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC-----CCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcc-cceEEEeCCCcEEE
Confidence 5799999999998888887743 44555555421 1 223566777 99998655444443
No 233
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=95.25 E-value=0.054 Score=33.16 Aligned_cols=35 Identities=17% Similarity=0.340 Sum_probs=27.9
Q ss_pred EEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChh
Q 032982 47 IYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPE 86 (129)
Q Consensus 47 v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~ 86 (129)
..|+.++|+.|+.....|++ .++.|-.+|+.+.+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-----~~i~~~~idi~~~~~ 36 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA-----NGIEYQFIDIGEDGP 36 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH-----cCCceEEEecCCChh
Confidence 36789999999999988887 367888888876543
No 234
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=95.20 E-value=0.042 Score=33.37 Aligned_cols=34 Identities=21% Similarity=0.537 Sum_probs=26.7
Q ss_pred EEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCCh
Q 032982 47 IYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP 85 (129)
Q Consensus 47 v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~ 85 (129)
..|+.++|+.|+.....|++ .++.|-.+|+.+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-----~~i~~~~idi~~~~ 35 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE-----HGVDYTAIDIVEEP 35 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH-----cCCceEEecccCCc
Confidence 46789999999999988877 36777788876543
No 235
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=95.07 E-value=0.38 Score=28.69 Aligned_cols=91 Identities=10% Similarity=0.109 Sum_probs=58.5
Q ss_pred eEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcC-CcEEEEEECCCChhHHhhcCCcccccEE
Q 032982 22 VMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYT-DVQFIKIDVDWLPEAAKAFDLIDVLPTF 100 (129)
Q Consensus 22 ~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~-~v~~~~v~~~~~~~~~~~~~v~~~~Pt~ 100 (129)
+..+++.++++..+ ..+++++|-|+..--. .....+.+++..++ ++.|+... ...+.+.+++ .|++
T Consensus 2 ~~~i~s~~~l~~f~----~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~---~~~i 68 (104)
T cd03069 2 SVELRTEAEFEKFL----SDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY---GEGV 68 (104)
T ss_pred ccccCCHHHHHHHh----ccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC---CCce
Confidence 34566767666644 2566677767655443 35778888888885 48886554 3466777776 3667
Q ss_pred EEEe---------CCeEEEEEeCC-CHHHHHHHHHhh
Q 032982 101 VLVK---------RGKEIDRVVGA-KKDELQMKTEKR 127 (129)
Q Consensus 101 ~i~~---------~G~~~~~~~g~-~~~~l~~~i~~~ 127 (129)
++|+ .+.. .+.|. +.+.|.+||...
T Consensus 69 vl~~p~~~~~k~de~~~--~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 69 VLFRPPRLSNKFEDSSV--KFDGDLDSSKIKKFIREN 103 (104)
T ss_pred EEEechhhhcccCcccc--cccCcCCHHHHHHHHHhh
Confidence 7772 2222 24665 888999999754
No 236
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=95.05 E-value=0.069 Score=33.47 Aligned_cols=34 Identities=18% Similarity=0.477 Sum_probs=25.4
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCC
Q 032982 46 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL 84 (129)
Q Consensus 46 lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~ 84 (129)
+..|+.++|+.|+.....|++ .++.|-.+|+.+.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~-----~gi~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEE-----HDIPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH-----cCCCcEEeeccCC
Confidence 456789999999998877766 2667777776543
No 237
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=94.93 E-value=0.013 Score=41.63 Aligned_cols=84 Identities=13% Similarity=0.271 Sum_probs=58.6
Q ss_pred CCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC-cEEEEEECCCChhHHhhcCCcccccEEEEEeCCeEEEEEeCC-CHHH
Q 032982 42 DRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDE 119 (129)
Q Consensus 42 ~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~-~~~~ 119 (129)
..++-+.||+.|||..+..++.+.-....++. -++..=+...-+....+|++. +.|+.+....--..... |. +..+
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~vee~~~lpsv~s~~~~~-~~ps~~~~n~t~~~~~~-~~r~l~s 153 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVEESQALPSVFSSYGIH-SEPSNLMLNQTCPASYR-GERDLAS 153 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccccccccHHHHhhcccchhccccc-cCCcceeeccccchhhc-ccccHHH
Confidence 55777889999999999999999999888875 444422334456778899999 99988765433222222 33 6666
Q ss_pred HHHHHHhh
Q 032982 120 LQMKTEKR 127 (129)
Q Consensus 120 l~~~i~~~ 127 (129)
|.++..+.
T Consensus 154 Lv~fy~~i 161 (319)
T KOG2640|consen 154 LVNFYTEI 161 (319)
T ss_pred HHHHHHhh
Confidence 66665554
No 238
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=94.69 E-value=0.42 Score=35.73 Aligned_cols=92 Identities=14% Similarity=0.236 Sum_probs=60.2
Q ss_pred HHHHHhcCCCeEEEEEEcCCChhHhhhhHHH-HH-HHHH-cCC-cEEEEEECCC--ChhHHhhcCCcccccEEEEE-eCC
Q 032982 34 QYEASKQSDRLVVIYYTAAWCGPCKFIEPYV-KD-FAAM-YTD-VQFIKIDVDW--LPEAAKAFDLIDVLPTFVLV-KRG 106 (129)
Q Consensus 34 ~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l-~~-~~~~-~~~-v~~~~v~~~~--~~~~~~~~~v~~~~Pt~~i~-~~G 106 (129)
.+..+ +..+-++|.|-+-+.-....+.+.- .. .... ... +..+.|+..+ ...++.-|.+. .+|.++++ ..|
T Consensus 11 AIa~a-K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v-~vPs~ffIg~sG 88 (506)
T KOG2507|consen 11 AIAEA-KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYV-SVPSIFFIGFSG 88 (506)
T ss_pred HHHHh-hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccc-cccceeeecCCC
Confidence 44444 3556666667777777777777433 22 2211 212 4444444432 34566778999 99987777 699
Q ss_pred eEEEEEeCC-CHHHHHHHHHhh
Q 032982 107 KEIDRVVGA-KKDELQMKTEKR 127 (129)
Q Consensus 107 ~~~~~~~g~-~~~~l~~~i~~~ 127 (129)
..+....|. +.++|..-|++.
T Consensus 89 tpLevitg~v~adeL~~~i~Kv 110 (506)
T KOG2507|consen 89 TPLEVITGFVTADELASSIEKV 110 (506)
T ss_pred ceeEEeeccccHHHHHHHHHHH
Confidence 999999999 899998888764
No 239
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=94.67 E-value=0.52 Score=28.37 Aligned_cols=94 Identities=15% Similarity=0.085 Sum_probs=57.0
Q ss_pred eEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC-cEEEEEECCCChhHHhhcCCcccccEE
Q 032982 22 VMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTF 100 (129)
Q Consensus 22 ~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~~~~~~~~~~v~~~~Pt~ 100 (129)
+..+++.++++..+. ..++.++|-|+..--. .....+.+++..+++ +.|+... ...+.+++++. . |.+
T Consensus 2 v~~i~s~~ele~f~~---~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~---~~~~~~~~~~~-~-~~v 70 (107)
T cd03068 2 SKQLQTLKQVQEFLR---DGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTF---DSEIFKSLKVS-P-GQL 70 (107)
T ss_pred ceEcCCHHHHHHHHh---cCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEC---hHHHHHhcCCC-C-Cce
Confidence 467778777776542 1325666666655433 456778888888854 8886554 34677888887 4 555
Q ss_pred EEEe---------CCeEEEEEe-CCCHHHHHHHHHh
Q 032982 101 VLVK---------RGKEIDRVV-GAKKDELQMKTEK 126 (129)
Q Consensus 101 ~i~~---------~G~~~~~~~-g~~~~~l~~~i~~ 126 (129)
++++ .+...+... +.+.+.|..||+.
T Consensus 71 vl~rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 71 VVFQPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred EEECcHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 5652 333333222 2234449998875
No 240
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=94.58 E-value=0.069 Score=32.16 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=26.3
Q ss_pred EEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCCh
Q 032982 47 IYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP 85 (129)
Q Consensus 47 v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~ 85 (129)
..|+.++|+.|+.....|++ .++.|-.+|+.+.+
T Consensus 2 ~iy~~~~C~~crka~~~L~~-----~~i~~~~~di~~~p 35 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEA-----RGVAYTFHDYRKDG 35 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHH-----cCCCeEEEecccCC
Confidence 46889999999998888876 36777777776543
No 241
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=94.37 E-value=0.42 Score=26.05 Aligned_cols=54 Identities=11% Similarity=0.073 Sum_probs=30.4
Q ss_pred EEEcCCChhHhhhhHHHHHHHHHcCCcEEE--EEECCCChhHHhhcCCcccccEEEEEeCCeE
Q 032982 48 YYTAAWCGPCKFIEPYVKDFAAMYTDVQFI--KIDVDWLPEAAKAFDLIDVLPTFVLVKRGKE 108 (129)
Q Consensus 48 ~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~--~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~~ 108 (129)
.++.++|++|+..+-.+... ++.|- .++..+.....+..+-. .+|+++. .+|..
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~-----gl~~~~~~~~~~~~~~~~~~~~~~-~vP~L~~-~~~~~ 58 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLK-----NIPVEQIILQNDDEATPIRMIGAK-QVPILEK-DDGSF 58 (71)
T ss_pred eEecCCCcHhHHHHHHHHHc-----CCCeEEEECCCCchHHHHHhcCCC-ccCEEEe-CCCeE
Confidence 46788999999887777653 44333 34433322222333334 7888743 33543
No 242
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=94.13 E-value=0.52 Score=26.13 Aligned_cols=69 Identities=14% Similarity=0.133 Sum_probs=43.9
Q ss_pred EEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCC-hhHHhhcCCcccccEEEEEeCCeEEEEEeCCCHHHHHHHHHhh
Q 032982 49 YTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL-PEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKR 127 (129)
Q Consensus 49 f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~-~~~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~~~~~l~~~i~~~ 127 (129)
++.++|++|+...-.++...- .+.+..++..+. +.+.+...-. .+|++. .+|..+. +-..+.+++++.
T Consensus 2 y~~~~Sp~~~kv~~~l~~~~i---~~~~~~v~~~~~~~~~~~~~p~~-~vPvL~--~~g~~l~-----dS~~I~~yL~~~ 70 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEKGI---PYELVPVDPEEKRPEFLKLNPKG-KVPVLV--DDGEVLT-----DSAAIIEYLEER 70 (75)
T ss_dssp EEETTSHHHHHHHHHHHHHTE---EEEEEEEBTTSTSHHHHHHSTTS-BSSEEE--ETTEEEE-----SHHHHHHHHHHH
T ss_pred CCcCCChHHHHHHHHHHHcCC---eEEEeccCcccchhHHHhhcccc-cceEEE--ECCEEEe-----CHHHHHHHHHHH
Confidence 678999999998777665321 255566665553 4444444444 899997 5576544 555666776654
Q ss_pred h
Q 032982 128 R 128 (129)
Q Consensus 128 ~ 128 (129)
.
T Consensus 71 ~ 71 (75)
T PF13417_consen 71 Y 71 (75)
T ss_dssp S
T ss_pred c
Confidence 3
No 243
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=94.03 E-value=0.2 Score=30.57 Aligned_cols=34 Identities=15% Similarity=0.428 Sum_probs=25.8
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCC
Q 032982 46 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL 84 (129)
Q Consensus 46 lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~ 84 (129)
+..|+.++|+.|+.....|++ .++.+-.+|+.+.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~-----~gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEE-----HQIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-----CCCceEEEecCCC
Confidence 346789999999998888877 3667777777543
No 244
>PRK12559 transcriptional regulator Spx; Provisional
Probab=93.96 E-value=0.14 Score=32.06 Aligned_cols=33 Identities=18% Similarity=0.590 Sum_probs=24.3
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCC
Q 032982 46 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW 83 (129)
Q Consensus 46 lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~ 83 (129)
+..|+.++|+.|+.....|++ .++.|-.+|+.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~-----~gi~~~~~di~~ 34 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEE-----NQIDYTEKNIVS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH-----cCCCeEEEEeeC
Confidence 456889999999998877766 256666666543
No 245
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=93.92 E-value=0.037 Score=31.87 Aligned_cols=52 Identities=21% Similarity=0.261 Sum_probs=43.6
Q ss_pred EEcCCChhHhhhhHHHHHHHHHcCC--cEEEEEECCCChhHHhhcCCcccccEEE
Q 032982 49 YTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWLPEAAKAFDLIDVLPTFV 101 (129)
Q Consensus 49 f~~~~c~~C~~~~~~l~~~~~~~~~--v~~~~v~~~~~~~~~~~~~v~~~~Pt~~ 101 (129)
|-+..-+.+......+..+.+.+-+ +.+-.+|+.+.|++++.++|- ++||++
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~iv-AtPtLi 56 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIV-ATPTLI 56 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEE-CHHHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCee-ecceEe
Confidence 4456667778888888888877543 999999999999999999999 999875
No 246
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.70 E-value=0.85 Score=27.27 Aligned_cols=73 Identities=18% Similarity=0.204 Sum_probs=46.2
Q ss_pred HHHHHHhcCCCeEEEEEEcCC---ChhHhhhhHHHHHHHHHcCC-cEEEEEECCCChhHHhhcCCcccccE-EEEEeCCe
Q 032982 33 SQYEASKQSDRLVVIYYTAAW---CGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPT-FVLVKRGK 107 (129)
Q Consensus 33 ~~~~~~~~~~k~~lv~f~~~~---c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~~~~~~~~~~v~~~~Pt-~~i~~~G~ 107 (129)
+.++....++++++.+=.+|. |+++.....+|... + +.|..+|+=+++++.+.+..-..+|| --+|-+|.
T Consensus 6 ~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~-----g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GE 80 (105)
T COG0278 6 DRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSAC-----GVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGE 80 (105)
T ss_pred HHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHc-----CCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCE
Confidence 345555667777766666655 55555544444432 4 89999999888887754433226776 45667887
Q ss_pred EEE
Q 032982 108 EID 110 (129)
Q Consensus 108 ~~~ 110 (129)
.+.
T Consensus 81 fvG 83 (105)
T COG0278 81 FVG 83 (105)
T ss_pred Eec
Confidence 665
No 247
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=93.69 E-value=1.1 Score=28.20 Aligned_cols=89 Identities=18% Similarity=0.206 Sum_probs=50.4
Q ss_pred hHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCcccccEEEEEeCCe-
Q 032982 29 HQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGK- 107 (129)
Q Consensus 29 ~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~- 107 (129)
+.+.+.+.++..-+-+ +|.=.-.... -+.....+.++...-.+ ..+.+ +|.+.++|+|+ .+|++++.+++.
T Consensus 12 ~~Lk~l~~~a~~~g~~-~VlRG~~~~~-~~~T~~~i~~L~~~~~~---~~v~I--dP~lF~~f~I~-~VPa~V~~~~~~~ 83 (130)
T TIGR02742 12 PLLKQLLDQAEALGAP-LVIRGLLDNG-FKATATRIQSLIKDGGK---SGVQI--DPQWFKQFDIT-AVPAFVVVKDGLA 83 (130)
T ss_pred HHHHHHHHHHHHhCCe-EEEeCCCCCC-HHHHHHHHHHHHhcCCC---CcEEE--ChHHHhhcCce-EcCEEEEECCCCc
Confidence 4556666665544444 3333333332 13344444444433222 22333 58899999999 999999998774
Q ss_pred ----------EEEEEeCC-CHHHHHHHHH
Q 032982 108 ----------EIDRVVGA-KKDELQMKTE 125 (129)
Q Consensus 108 ----------~~~~~~g~-~~~~l~~~i~ 125 (129)
......|. +.+...+.+.
T Consensus 84 c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia 112 (130)
T TIGR02742 84 CLPEQPCPESDYDVVYGNVSLKGALEKMA 112 (130)
T ss_pred ccccCCCCCCCeeEEEecccHHHHHHHHH
Confidence 35566676 6554444443
No 248
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=93.28 E-value=0.83 Score=30.20 Aligned_cols=88 Identities=18% Similarity=0.220 Sum_probs=51.0
Q ss_pred hcCCCeEEEEEE-cCCChhHhhhhHHHHHHHHHcCC----cEEEEEEC--------------------------CCChhH
Q 032982 39 KQSDRLVVIYYT-AAWCGPCKFIEPYVKDFAAMYTD----VQFIKIDV--------------------------DWLPEA 87 (129)
Q Consensus 39 ~~~~k~~lv~f~-~~~c~~C~~~~~~l~~~~~~~~~----v~~~~v~~--------------------------~~~~~~ 87 (129)
...++.+++.|| .++---|-...-.+...+.++.+ |..+.+|. |.+..+
T Consensus 30 dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ntprk~gGlg~~~iPllsD~~~~I 109 (196)
T KOG0852|consen 30 DYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWINTPRKQGGLGPLNIPLLSDLNHEI 109 (196)
T ss_pred hhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHhcCchhhCCcCccccceeeccchhh
Confidence 346899999998 44444443344444444444432 44444442 346688
Q ss_pred HhhcCCc---cccc---EEEEEeCCeEEE-----EEeCCCHHHHHHHHHh
Q 032982 88 AKAFDLI---DVLP---TFVLVKRGKEID-----RVVGAKKDELQMKTEK 126 (129)
Q Consensus 88 ~~~~~v~---~~~P---t~~i~~~G~~~~-----~~~g~~~~~l~~~i~~ 126 (129)
+++||+- ++.+ .+++..+|.... ...|.+-++...+|+.
T Consensus 110 srdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLvqA 159 (196)
T KOG0852|consen 110 SRDYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDETLRLVQA 159 (196)
T ss_pred HHhcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHHHHHHHH
Confidence 9999985 3566 455557776533 2345567777766654
No 249
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=93.19 E-value=0.47 Score=30.99 Aligned_cols=94 Identities=16% Similarity=0.231 Sum_probs=61.9
Q ss_pred HHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC--cEEEEEECC--------CChh----HHhhcCCc------
Q 032982 35 YEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVD--------WLPE----AAKAFDLI------ 94 (129)
Q Consensus 35 ~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~--v~~~~v~~~--------~~~~----~~~~~~v~------ 94 (129)
+......++++||.=-|+.|+.-......|..+.++|.. +.++..-+. ++.+ ++.+|+..
T Consensus 27 v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei~~f~~~r~~~~f~if~K 106 (171)
T KOG1651|consen 27 VSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEILNFVKVRYGAEFPIFQK 106 (171)
T ss_pred ccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHHHHHHHhccCCCCccEeE
Confidence 334445899999988999999999888899999888864 555554432 1222 22333331
Q ss_pred -----------------------c-c----ccEEEEEeCCeEEEEEeCC-CHHHHHHHHHhhh
Q 032982 95 -----------------------D-V----LPTFVLVKRGKEIDRVVGA-KKDELQMKTEKRR 128 (129)
Q Consensus 95 -----------------------~-~----~Pt~~i~~~G~~~~~~~g~-~~~~l~~~i~~~~ 128 (129)
+ . +--+++.++|+++.|+.-. ++-.++.-|++++
T Consensus 107 idVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~lL 169 (171)
T KOG1651|consen 107 IDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIEKLL 169 (171)
T ss_pred EecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccchhHHHHh
Confidence 0 1 2236666899999998665 6666666677665
No 250
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=93.07 E-value=0.29 Score=26.64 Aligned_cols=56 Identities=14% Similarity=0.188 Sum_probs=34.1
Q ss_pred EEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCC----ChhHHhhcCCcccccEEEEEeCCe
Q 032982 47 IYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW----LPEAAKAFDLIDVLPTFVLVKRGK 107 (129)
Q Consensus 47 v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~----~~~~~~~~~v~~~~Pt~~i~~~G~ 107 (129)
..|+.++|++|+..+-.+....-. .....++... .+++.+..... .+|++.. .+|.
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~---~~~~~v~~~~~~~~~~~~~~~~p~~-~vP~l~~-~~~~ 61 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGID---VPLVTVDLAAGEQRSPEFLAKNPAG-TVPVLEL-DDGT 61 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCC---ceEEEeecccCccCCHHHHhhCCCC-CCCEEEe-CCCC
Confidence 357788999999998887765322 3444555422 23444444444 8999864 3444
No 251
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=92.94 E-value=0.83 Score=24.81 Aligned_cols=69 Identities=14% Similarity=0.120 Sum_probs=37.9
Q ss_pred EEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCC-hhHHhhcCCcccccEEEEEeCCeEEEEEeCCCHHHHHHHHH
Q 032982 47 IYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL-PEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTE 125 (129)
Q Consensus 47 v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~-~~~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~~~~~l~~~i~ 125 (129)
..|+.++|++|+...-.++...-. .....+|.... +++.+.... +.+|++. .+|..+. +...+..+++
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~-~~vP~l~--~~~~~l~-----es~aI~~yL~ 70 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS---VEIIDVDPDNPPEDLAELNPY-GTVPTLV--DRDLVLY-----ESRIIMEYLD 70 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc---cEEEEcCCCCCCHHHHhhCCC-CCCCEEE--ECCEEEE-----cHHHHHHHHH
Confidence 456789999999988777553222 33334444433 343333343 4899764 4453322 3444555554
Q ss_pred h
Q 032982 126 K 126 (129)
Q Consensus 126 ~ 126 (129)
+
T Consensus 71 ~ 71 (73)
T cd03059 71 E 71 (73)
T ss_pred h
Confidence 3
No 252
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=92.85 E-value=0.29 Score=30.73 Aligned_cols=33 Identities=15% Similarity=0.427 Sum_probs=24.6
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCC
Q 032982 46 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW 83 (129)
Q Consensus 46 lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~ 83 (129)
+..|+.++|+.|+.....|++ .++.|-.+|+.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~-----~~i~~~~~d~~~ 34 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA-----HQLSYKEQNLGK 34 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-----cCCCeEEEECCC
Confidence 346789999999998777766 367777777654
No 253
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=92.76 E-value=0.36 Score=25.45 Aligned_cols=55 Identities=11% Similarity=-0.023 Sum_probs=33.6
Q ss_pred EEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCCh--hHHhhcCCcccccEEEEEeCCeE
Q 032982 48 YYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP--EAAKAFDLIDVLPTFVLVKRGKE 108 (129)
Q Consensus 48 ~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~--~~~~~~~v~~~~Pt~~i~~~G~~ 108 (129)
.|+.++|+.|+.....+....-. +....++.+... .+.+..+.. .+|++.. +|..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~-~~P~l~~--~~~~ 59 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGLP---YELVPVDLGEGEQEEFLALNPLG-KVPVLED--GGLV 59 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC---cEEEEeCCCCCCCHHHHhcCCCC-CCCEEEE--CCEE
Confidence 57789999999888877765322 344444443322 244455666 8997753 3544
No 254
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=92.61 E-value=1.5 Score=26.78 Aligned_cols=70 Identities=14% Similarity=0.264 Sum_probs=40.6
Q ss_pred hHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCcccccEEEEEeC
Q 032982 29 HQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKR 105 (129)
Q Consensus 29 ~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~ 105 (129)
+.+++.+..+... +.++|.=.-... .=......+.++..+.+.. ..+.+ +|.+.++|+|+ .+|++++.++
T Consensus 11 ~~L~~l~~~a~~~-~~~~V~RG~~~g-~~~~t~~~~~~l~~~~~~~--~~v~I--dP~~F~~y~I~-~VPa~V~~~~ 80 (113)
T PF09673_consen 11 ASLRNLLKQAERA-GVVVVFRGFPDG-SFKPTAKAIQELLRKDDPC--PGVQI--DPRLFRQYNIT-AVPAFVVVKD 80 (113)
T ss_pred HHHHHHHHHHHhC-CcEEEEECCCCC-CHHHHHHHHHHHhhccCCC--cceeE--ChhHHhhCCce-EcCEEEEEcC
Confidence 5666667665444 444444444433 2233333444444433222 23333 48899999999 9999988877
No 255
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=92.35 E-value=0.5 Score=30.98 Aligned_cols=44 Identities=23% Similarity=0.426 Sum_probs=32.5
Q ss_pred cCCCeEEEEEEcCCC-hhHhhhhHHHHHHHHHcC----CcEEEEEECCC
Q 032982 40 QSDRLVVIYYTAAWC-GPCKFIEPYVKDFAAMYT----DVQFIKIDVDW 83 (129)
Q Consensus 40 ~~~k~~lv~f~~~~c-~~C~~~~~~l~~~~~~~~----~v~~~~v~~~~ 83 (129)
-.+|+++|.|.-..| ..|-.+...+.++.+.++ +++++.|.+|.
T Consensus 50 ~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP 98 (174)
T PF02630_consen 50 LKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDP 98 (174)
T ss_dssp GTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESST
T ss_pred hCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCC
Confidence 379999999988888 568777777766655543 38899888874
No 256
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=92.21 E-value=2.1 Score=28.98 Aligned_cols=74 Identities=24% Similarity=0.442 Sum_probs=46.1
Q ss_pred EEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCC-----------C-------hhHHhhcCCccc--ccEEEEEeCCe
Q 032982 48 YYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW-----------L-------PEAAKAFDLIDV--LPTFVLVKRGK 107 (129)
Q Consensus 48 ~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~-----------~-------~~~~~~~~v~~~--~Pt~~i~~~G~ 107 (129)
.|.+..|..|-...+.|.++.++ +++..+..++|- . ...+++++.. . +|.++ -||.
T Consensus 4 LFTSQGCsSCPpAD~~L~~l~~~-~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~-~vYTPQ~v--VnG~ 79 (202)
T PF06764_consen 4 LFTSQGCSSCPPADRLLSELAAR-PDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLR-SVYTPQVV--VNGR 79 (202)
T ss_dssp EEE-TT-TT-HHHHHHHHHHHHH-TSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S----SSEEE--ETTT
T ss_pred EecCCCCCCCcHHHHHHHHhhcC-CCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCC-CCcCCeEE--ECCe
Confidence 57788999999999999999998 477666666541 1 1234455554 4 56655 5665
Q ss_pred EEEEEeCCCHHHHHHHHHhh
Q 032982 108 EIDRVVGAKKDELQMKTEKR 127 (129)
Q Consensus 108 ~~~~~~g~~~~~l~~~i~~~ 127 (129)
. ...|.+.+++...|++.
T Consensus 80 ~--~~~g~~~~~~~~ai~~~ 97 (202)
T PF06764_consen 80 E--HRVGSDRAAVEAAIQAA 97 (202)
T ss_dssp E--EEETT-HHHHHHHHHHH
T ss_pred e--eeeccCHHHHHHHHHHh
Confidence 5 34577888888877764
No 257
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=92.00 E-value=1.5 Score=25.67 Aligned_cols=65 Identities=14% Similarity=0.142 Sum_probs=41.2
Q ss_pred cCCChhHhhhhHHHHHHHHHcCC--cEEEEEECCCChhHHhhcCCcccccEEEEEeCCeEEEEEeCCCHHHHHHHHHhh
Q 032982 51 AAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKR 127 (129)
Q Consensus 51 ~~~c~~C~~~~~~l~~~~~~~~~--v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~~~~~l~~~i~~~ 127 (129)
..+|++|++.+=.|... + ..+..+|....++...+.+-.|.+|+++ .+|..+. +...+.++|++.
T Consensus 19 ~g~cpf~~rvrl~L~eK-----gi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~--~~~~~i~-----eS~~I~eYLde~ 85 (91)
T cd03061 19 IGNCPFCQRLFMVLWLK-----GVVFNVTTVDMKRKPEDLKDLAPGTQPPFLL--YNGEVKT-----DNNKIEEFLEET 85 (91)
T ss_pred CCCChhHHHHHHHHHHC-----CCceEEEEeCCCCCCHHHHHhCCCCCCCEEE--ECCEEec-----CHHHHHHHHHHH
Confidence 36899999888777663 4 5556677666555555554444899654 4565443 455666666653
No 258
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=91.54 E-value=2.1 Score=26.28 Aligned_cols=86 Identities=14% Similarity=0.023 Sum_probs=54.3
Q ss_pred cCCCeEEEEEEcC--CChhHhhhhHHHHHHHHHcCC--cEEEEE-ECCCCh-----------hHHhhcCCcc-cccEEEE
Q 032982 40 QSDRLVVIYYTAA--WCGPCKFIEPYVKDFAAMYTD--VQFIKI-DVDWLP-----------EAAKAFDLID-VLPTFVL 102 (129)
Q Consensus 40 ~~~k~~lv~f~~~--~c~~C~~~~~~l~~~~~~~~~--v~~~~v-~~~~~~-----------~~~~~~~v~~-~~Pt~~i 102 (129)
.+++++|| ++| ..+.=+.....|.+-...+.. +.++.+ +-.... .+.++|++.. ++-.+++
T Consensus 8 w~~R~lvv--~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLi 85 (118)
T PF13778_consen 8 WKNRLLVV--FAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLI 85 (118)
T ss_pred CcCceEEE--ECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEE
Confidence 34555544 454 566667777777775555543 555555 222222 6778898762 2223444
Q ss_pred EeCCeEEEEEeCC-CHHHHHHHHHhh
Q 032982 103 VKRGKEIDRVVGA-KKDELQMKTEKR 127 (129)
Q Consensus 103 ~~~G~~~~~~~g~-~~~~l~~~i~~~ 127 (129)
-++|.+-.+.... +.++|-..|++.
T Consensus 86 GKDG~vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 86 GKDGGVKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred eCCCcEEEecCCCCCHHHHHHHHhCC
Confidence 4789888887777 999999988763
No 259
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=91.52 E-value=0.74 Score=32.27 Aligned_cols=89 Identities=17% Similarity=0.260 Sum_probs=50.4
Q ss_pred hcCCCeEEEEEEcCCChh-HhhhhHHHHHHHHHc---CCc----EEEEEECCC--------------------------C
Q 032982 39 KQSDRLVVIYYTAAWCGP-CKFIEPYVKDFAAMY---TDV----QFIKIDVDW--------------------------L 84 (129)
Q Consensus 39 ~~~~k~~lv~f~~~~c~~-C~~~~~~l~~~~~~~---~~v----~~~~v~~~~--------------------------~ 84 (129)
.-.+|++|++|.-+.||. |-.....+.++.... +++ .|+.+|=.. .
T Consensus 136 df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqv 215 (280)
T KOG2792|consen 136 DFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQV 215 (280)
T ss_pred ccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHH
Confidence 447999999999888875 655555554444433 232 355555311 1
Q ss_pred hhHHhhcCCc---------------ccccEEEEEeCCeEEEEEeCC-CHHHHHHHHHhh
Q 032982 85 PEAAKAFDLI---------------DVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKR 127 (129)
Q Consensus 85 ~~~~~~~~v~---------------~~~Pt~~i~~~G~~~~~~~g~-~~~~l~~~i~~~ 127 (129)
..+|++|.|- +.+=.+++..+|+.++.+-.. +++++..-|.++
T Consensus 216 k~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~ 274 (280)
T KOG2792|consen 216 KQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKH 274 (280)
T ss_pred HHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHH
Confidence 2345555442 111122223578888766444 888887777654
No 260
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.48 E-value=0.45 Score=31.97 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=33.1
Q ss_pred hHHhhcCCcccccEEEEEeCCeEEEEEeC--C-CHHHHHHHHHhhh
Q 032982 86 EAAKAFDLIDVLPTFVLVKRGKEIDRVVG--A-KKDELQMKTEKRR 128 (129)
Q Consensus 86 ~~~~~~~v~~~~Pt~~i~~~G~~~~~~~g--~-~~~~l~~~i~~~~ 128 (129)
.++++.++. ++||+++-+||+..---.| . +++.+..++.+.+
T Consensus 165 ~l~~rlg~~-GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 165 RLMQRLGAA-GFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHhccC-CCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHH
Confidence 466788999 9999999999987665555 3 7788888877654
No 261
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=90.47 E-value=2.7 Score=26.11 Aligned_cols=59 Identities=12% Similarity=0.069 Sum_probs=35.4
Q ss_pred HHHHHHHHHcCCcEEEEEECCCChh----------HHhhcCCcccccEEEEEeCCeEEEEEeCCCHHHHHHHHH
Q 032982 62 PYVKDFAAMYTDVQFIKIDVDWLPE----------AAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTE 125 (129)
Q Consensus 62 ~~l~~~~~~~~~v~~~~v~~~~~~~----------~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~~~~~l~~~i~ 125 (129)
..++.+++ .++.+.+.|..++|. +-++-|.. ..|-++ -+|+++..-..++.++|.+|+.
T Consensus 31 ~~~~~Lk~--~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e-~LPitl--VdGeiv~~G~YPt~eEl~~~~~ 99 (123)
T PF06953_consen 31 ADLDWLKE--QGVEVERYNLAQNPQAFVENPEVNQLLQTEGAE-ALPITL--VDGEIVKTGRYPTNEELAEWLG 99 (123)
T ss_dssp HHHHHHHH--TT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GG-G-SEEE--ETTEEEEESS---HHHHHHHHT
T ss_pred HHHHHHHh--CCceEEEEccccCHHHHHhCHHHHHHHHHcCcc-cCCEEE--ECCEEEEecCCCCHHHHHHHhC
Confidence 34444433 369999999987653 22345778 999665 6888876543348999999874
No 262
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=90.18 E-value=0.44 Score=28.69 Aligned_cols=58 Identities=9% Similarity=0.178 Sum_probs=36.9
Q ss_pred EEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCcc-cccEEEE-EeCCe
Q 032982 49 YTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLID-VLPTFVL-VKRGK 107 (129)
Q Consensus 49 f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~-~~Pt~~i-~~~G~ 107 (129)
||..+||.|......+.+.-. ...+.|+.+......++.+.+++.. ..-+.+. ..+|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR-GGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC-CCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 789999999999988888722 2236666664444444456677652 2333333 46776
No 263
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=89.98 E-value=0.59 Score=30.64 Aligned_cols=27 Identities=26% Similarity=0.642 Sum_probs=24.7
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHcC
Q 032982 46 VIYYTAAWCGPCKFIEPYVKDFAAMYT 72 (129)
Q Consensus 46 lv~f~~~~c~~C~~~~~~l~~~~~~~~ 72 (129)
|.+|+.+.||+|-...+.+.++.++++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 668889999999999999999999984
No 264
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=89.97 E-value=0.92 Score=31.17 Aligned_cols=37 Identities=30% Similarity=0.311 Sum_probs=28.3
Q ss_pred HHhhcCCcccccEEEEEeCCeEEEEEeCC-CHHHHHHHHHhhh
Q 032982 87 AAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKRR 128 (129)
Q Consensus 87 ~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~-~~~~l~~~i~~~~ 128 (129)
.+++.||. ++|++++ .+| ....|. +.+.+...|.+++
T Consensus 176 ~A~e~gI~-gVP~fv~-d~~---~~V~Gaq~~~v~~~al~~~~ 213 (225)
T COG2761 176 AAQEMGIR-GVPTFVF-DGK---YAVSGAQPYDVLEDALRQLL 213 (225)
T ss_pred HHHHCCCc-cCceEEE-cCc---EeecCCCCHHHHHHHHHHHH
Confidence 45688999 9999988 344 245588 8898988888765
No 265
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=89.77 E-value=0.59 Score=30.90 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=26.3
Q ss_pred hhHHhhcCCcccccEEEEEeCCeEEEEEeCC-CHHHHHHHHH
Q 032982 85 PEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTE 125 (129)
Q Consensus 85 ~~~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~-~~~~l~~~i~ 125 (129)
...+.+.|+. ++||+++ +|+ ....|. +.+.+.+.|+
T Consensus 165 ~~~a~~~gv~-G~Pt~vv--~g~--~~~~G~~~~~~~~~~i~ 201 (201)
T cd03024 165 EARARQLGIS-GVPFFVF--NGK--YAVSGAQPPEVFLQALR 201 (201)
T ss_pred HHHHHHCCCC-cCCEEEE--CCe--EeecCCCCHHHHHHHhC
Confidence 3456688999 9999987 444 235688 8888887763
No 266
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=89.44 E-value=2.8 Score=26.53 Aligned_cols=68 Identities=12% Similarity=0.089 Sum_probs=49.5
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC-cEEEEEECCCChhHHhhcCCccccc-EEEEEeCCeEEE
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLP-TFVLVKRGKEID 110 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~~~~~~~~~~v~~~~P-t~~i~~~G~~~~ 110 (129)
.+++-.|.+|.-.|+.|-.....|.+.- .++ +.|..+.......+.+..++...-+ ++++.++|+...
T Consensus 5 ~~~p~~vvlyDG~C~lC~~~vrfLi~~D--~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~~ 74 (137)
T COG3011 5 MKKPDLVVLYDGVCPLCDGWVRFLIRRD--QGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLLV 74 (137)
T ss_pred CCCCCEEEEECCcchhHHHHHHHHHHhc--cCCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceEe
Confidence 4667778889999999998776665532 223 9999998888878888888873324 666668887654
No 267
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=88.80 E-value=1.3 Score=24.18 Aligned_cols=56 Identities=20% Similarity=0.197 Sum_probs=33.8
Q ss_pred EEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCC----ChhHHhhcCCcccccEEEEEeCCeE
Q 032982 47 IYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW----LPEAAKAFDLIDVLPTFVLVKRGKE 108 (129)
Q Consensus 47 v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~----~~~~~~~~~v~~~~Pt~~i~~~G~~ 108 (129)
..|+.+.|+.|+...-.++...-. +....++..+ .+++.+..... .+|+++. +|..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~---~e~~~i~~~~~~~~~~~~~~~~p~~-~vP~l~~--~~~~ 61 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLE---LNLKEVNLMKGEHLKPEFLKLNPQH-TVPTLVD--NGFV 61 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCC---CEEEEecCccCCcCCHHHHhhCcCC-CCCEEEE--CCEE
Confidence 357899999999877777664322 4444555432 24444444444 8999853 4543
No 268
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=88.41 E-value=5.1 Score=27.76 Aligned_cols=42 Identities=14% Similarity=0.325 Sum_probs=35.4
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHc-----CCcEEEEEECC
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMY-----TDVQFIKIDVD 82 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~-----~~v~~~~v~~~ 82 (129)
.++++||-+-..+|..|......|+.+..++ ++|.|+.||--
T Consensus 25 ~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 25 LGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred CCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 7899999999999999999888888887554 35999999853
No 269
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=88.33 E-value=5 Score=27.06 Aligned_cols=37 Identities=5% Similarity=0.037 Sum_probs=26.3
Q ss_pred CCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEEC
Q 032982 42 DRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDV 81 (129)
Q Consensus 42 ~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~ 81 (129)
..-.+.+|-.+.|+.|......+.. ....+.++.|+.
T Consensus 108 ~~~rlalFvkd~C~~C~~~~~~l~a---~~~~~Diylvgs 144 (200)
T TIGR03759 108 GGGRLALFVKDDCVACDARVQRLLA---DNAPLDLYLVGS 144 (200)
T ss_pred CCCeEEEEeCCCChHHHHHHHHHhc---CCCceeEEEecC
Confidence 4455667788999999988776632 223499999983
No 270
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=87.21 E-value=6.1 Score=25.55 Aligned_cols=42 Identities=14% Similarity=0.141 Sum_probs=34.2
Q ss_pred CCCe-EEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECC
Q 032982 41 SDRL-VVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD 82 (129)
Q Consensus 41 ~~k~-~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~ 82 (129)
.+|. ++..|=+-+-|-|....+.|.+.++++.++.++.+.+|
T Consensus 43 ~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~~~Vl~IS~D 85 (158)
T COG2077 43 AGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGNTVVLCISMD 85 (158)
T ss_pred CCceEEEEEccCCCCchhhHHHHHHHHHHhccCCcEEEEEeCC
Confidence 4554 44455578999999999999999999988888888876
No 271
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=86.30 E-value=1.7 Score=26.52 Aligned_cols=33 Identities=12% Similarity=0.139 Sum_probs=23.8
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCC
Q 032982 46 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW 83 (129)
Q Consensus 46 lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~ 83 (129)
+..|+.+.|..|+.....|++. ++.|-.+|+-+
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~-----gi~~~~~d~~~ 34 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA-----GHEVEVRDLLT 34 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEeehhc
Confidence 4567899999999888777662 56666666543
No 272
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=86.24 E-value=1.1 Score=29.30 Aligned_cols=33 Identities=33% Similarity=0.423 Sum_probs=23.7
Q ss_pred hHHhhcCCcccccEEEEEeCCeEEEEEeCC-CHHHHHHHH
Q 032982 86 EAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKT 124 (129)
Q Consensus 86 ~~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~-~~~~l~~~i 124 (129)
..+.++|+. ++|++++ +|+ .+.|. ..+.+...+
T Consensus 158 ~~a~~~gi~-gvPtfvv--~g~---~~~G~~~l~~~~~~l 191 (192)
T cd03022 158 EEAIARGVF-GVPTFVV--DGE---MFWGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHcCCC-cCCeEEE--CCe---eecccccHHHHHHHh
Confidence 455688999 9999987 664 45577 667666554
No 273
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=86.13 E-value=7.4 Score=26.58 Aligned_cols=65 Identities=12% Similarity=0.105 Sum_probs=39.9
Q ss_pred CChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCcccccEEEEEeCCeEEEEEeCCCHHHHHHHHHhh
Q 032982 53 WCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKR 127 (129)
Q Consensus 53 ~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~~~~~l~~~i~~~ 127 (129)
.|+.|+...-.|. .+....++-.||+...++..+..--.+..|.+.+..+++ .+-.+++.+|++-
T Consensus 20 dcpf~qr~~m~L~---~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~d~~~~-------tDs~~Ie~~Lee~ 84 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKGVPFKVTTVDLSRKPEWFLDISPGGKPPVLKFDEKWV-------TDSDKIEEFLEEK 84 (221)
T ss_pred CChhHHHHHHHHH---HcCCCceEEEeecCCCcHHHHhhCCCCCCCeEEeCCcee-------ccHHHHHHHHHHh
Confidence 6888888776666 332348888999998877775554442666655433221 1455566665543
No 274
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=85.78 E-value=4.8 Score=23.01 Aligned_cols=53 Identities=11% Similarity=0.114 Sum_probs=32.2
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCCh-hHHhhcCCcccccEEEE
Q 032982 46 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP-EAAKAFDLIDVLPTFVL 102 (129)
Q Consensus 46 lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~-~~~~~~~v~~~~Pt~~i 102 (129)
+..++.+.|++|+...-.+....- .+.+..++..... .+.+..... .+|.+..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl---~~~~~~v~~~~~~~~~~~~np~~-~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNI---PHEVININLKDKPDWFLEKNPQG-KVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCC---CCeEEEeCCCCCcHHHHhhCCCC-CcCEEEE
Confidence 344678889999988776666322 2455555554432 344444445 8998864
No 275
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=85.27 E-value=5.1 Score=29.51 Aligned_cols=75 Identities=12% Similarity=0.154 Sum_probs=44.1
Q ss_pred CCChhHhh-hhHHHHHHHHHcCC----cEEEEEECC-CC--hhHHhhcCCcccccEEEEEeCCeEEEEEeCC-CHHHHHH
Q 032982 52 AWCGPCKF-IEPYVKDFAAMYTD----VQFIKIDVD-WL--PEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQM 122 (129)
Q Consensus 52 ~~c~~C~~-~~~~l~~~~~~~~~----v~~~~v~~~-~~--~~~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~-~~~~l~~ 122 (129)
|-|+.|.. ......++.+++.+ +++...-+- .. ..-...+|+.|+-+..++|.+|+++.+..+. =.++|.+
T Consensus 272 PgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv~~~~~~~~l~~ 351 (360)
T PRK00366 272 PTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIKTLPEENIVEELEA 351 (360)
T ss_pred CCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEeeeeChHhHHHHHHH
Confidence 33444433 34444556666654 555555442 11 2234678988555678999999999987654 3455555
Q ss_pred HHHh
Q 032982 123 KTEK 126 (129)
Q Consensus 123 ~i~~ 126 (129)
.|++
T Consensus 352 ~i~~ 355 (360)
T PRK00366 352 EIEA 355 (360)
T ss_pred HHHH
Confidence 5544
No 276
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=85.23 E-value=7.4 Score=29.06 Aligned_cols=80 Identities=16% Similarity=0.304 Sum_probs=58.3
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCcccccEEEEEeCCeEEEEEeCC-CHHH
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDE 119 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~-~~~~ 119 (129)
.+...+=-|++-.|..|-.....|.-+.-..|++.-..+|-.-..+-.+.-+|. ++||++ -||+... .|. +.++
T Consensus 115 ~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa~Fq~Evear~IM-aVPtvf--lnGe~fg--~GRmtlee 189 (520)
T COG3634 115 DGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGALFQDEVEARNIM-AVPTVF--LNGEEFG--QGRMTLEE 189 (520)
T ss_pred CCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecchhhHhHHHhccce-ecceEE--Ecchhhc--ccceeHHH
Confidence 455666667788999999999999988888888888888876555556777999 999986 4554432 233 5555
Q ss_pred HHHHHH
Q 032982 120 LQMKTE 125 (129)
Q Consensus 120 l~~~i~ 125 (129)
+.+.+.
T Consensus 190 ilaki~ 195 (520)
T COG3634 190 ILAKID 195 (520)
T ss_pred HHHHhc
Confidence 555443
No 277
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=84.90 E-value=6.7 Score=23.90 Aligned_cols=88 Identities=19% Similarity=0.119 Sum_probs=63.4
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC---cEEEEEECCCChhHH----hhcCCcccccEEEEEe---CCeEEE
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD---VQFIKIDVDWLPEAA----KAFDLIDVLPTFVLVK---RGKEID 110 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~---v~~~~v~~~~~~~~~----~~~~v~~~~Pt~~i~~---~G~~~~ 110 (129)
-+...++.|--+..+.-.++.+++.++++.+.+ +.++-||=|+.|-+. +.|+|.=.-|.+=+.. +..+=.
T Consensus 19 ~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~vtdadSvW~ 98 (120)
T cd03074 19 LDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVNVTDADSVWM 98 (120)
T ss_pred cCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEecccccceeE
Confidence 357788899999999999999999999999864 999999999877544 4666652357654441 222222
Q ss_pred EE---eCC-CHHHHHHHHHhhh
Q 032982 111 RV---VGA-KKDELQMKTEKRR 128 (129)
Q Consensus 111 ~~---~g~-~~~~l~~~i~~~~ 128 (129)
.. ... +.++|+.||+..+
T Consensus 99 ~m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 99 EMDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred ecccccccCcHHHHHHHHHhhC
Confidence 22 133 7999999998753
No 278
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=84.74 E-value=5.3 Score=29.24 Aligned_cols=75 Identities=11% Similarity=0.088 Sum_probs=46.7
Q ss_pred CChhHhhhh----HHHHHHHHHcCC----cEEEEEECC--C-ChhHHhhcCCccc-ccEEEEEeCCeEEEEEeCC-CHHH
Q 032982 53 WCGPCKFIE----PYVKDFAAMYTD----VQFIKIDVD--W-LPEAAKAFDLIDV-LPTFVLVKRGKEIDRVVGA-KKDE 119 (129)
Q Consensus 53 ~c~~C~~~~----~~l~~~~~~~~~----v~~~~v~~~--~-~~~~~~~~~v~~~-~Pt~~i~~~G~~~~~~~g~-~~~~ 119 (129)
-||.|-+.. ..+.++.+++.. +++..+-+- - ...--..+|+.++ .|...+|.+|+.+.++.+. =.++
T Consensus 263 aCP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~~~~~~~~ee 342 (361)
T COG0821 263 ACPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKKLPEEDIVEE 342 (361)
T ss_pred ECCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEecChhhHHHH
Confidence 488886543 333445554432 445444332 1 1112246688744 7899999999999988776 4788
Q ss_pred HHHHHHhh
Q 032982 120 LQMKTEKR 127 (129)
Q Consensus 120 l~~~i~~~ 127 (129)
|...++++
T Consensus 343 l~~~i~~~ 350 (361)
T COG0821 343 LEALIEAY 350 (361)
T ss_pred HHHHHHHH
Confidence 88887764
No 279
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=84.59 E-value=0.77 Score=30.15 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=25.1
Q ss_pred CCCeEEEEEE-cCCChhHhhhhHHHHHHHHHcC--CcEEEEEECC
Q 032982 41 SDRLVVIYYT-AAWCGPCKFIEPYVKDFAAMYT--DVQFIKIDVD 82 (129)
Q Consensus 41 ~~k~~lv~f~-~~~c~~C~~~~~~l~~~~~~~~--~v~~~~v~~~ 82 (129)
++++++++|| +..-|.|......|+.-..++. +..++.+..|
T Consensus 89 ~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D 133 (211)
T KOG0855|consen 89 GNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGD 133 (211)
T ss_pred CCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccC
Confidence 5668888888 5566777665555544333332 2556666554
No 280
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=84.24 E-value=4.3 Score=28.21 Aligned_cols=81 Identities=20% Similarity=0.149 Sum_probs=53.6
Q ss_pred CCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEE--EEECCC----------------ChhHHhhcCCcccccEEEEE
Q 032982 42 DRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFI--KIDVDW----------------LPEAAKAFDLIDVLPTFVLV 103 (129)
Q Consensus 42 ~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~--~v~~~~----------------~~~~~~~~~v~~~~Pt~~i~ 103 (129)
..-|+=.|.+..|..|--....|.+++.+ +++.-+ .||.-. ...+++.|+-. +++|-..+
T Consensus 41 ~~~VVELfTSQGCsSCPPAd~~l~k~a~~-~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~-~vyTPQav 118 (261)
T COG5429 41 PLGVVELFTSQGCSSCPPADANLAKLADD-PGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGAR-GVYTPQAV 118 (261)
T ss_pred CceEEEEeecCCcCCCChHHHHHHHhccC-CCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccC-CCCCchhe
Confidence 34555567788999999999999998876 454444 344321 22456777877 87776666
Q ss_pred eCCeEEEEEeCCCHHHHHHHHHh
Q 032982 104 KRGKEIDRVVGAKKDELQMKTEK 126 (129)
Q Consensus 104 ~~G~~~~~~~g~~~~~l~~~i~~ 126 (129)
-||... ..|.++..+...|..
T Consensus 119 vnGr~~--~~Gad~~~i~~~i~a 139 (261)
T COG5429 119 VNGRVH--ANGADPGAIEDAIAA 139 (261)
T ss_pred eechhh--hcCCCHHHHHHHHHH
Confidence 777653 336677777776653
No 281
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=83.82 E-value=2.7 Score=28.49 Aligned_cols=37 Identities=14% Similarity=0.246 Sum_probs=26.7
Q ss_pred ChhHHhhcCCcccccEEEEEeCCeEEEEEeCC-CHHHHHH
Q 032982 84 LPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQM 122 (129)
Q Consensus 84 ~~~~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~-~~~~l~~ 122 (129)
+|.+.++|+|. .+|++++.- +...++..|. +.+.-.+
T Consensus 151 DP~lF~~F~I~-~VPafVv~C-~~~yD~I~GNIsl~~ALe 188 (212)
T PRK13730 151 DPTLFSQYGIR-SVPALVVFC-SQGYDIIRGNLRVGQALE 188 (212)
T ss_pred CHHHHHhcCCc-cccEEEEEc-CCCCCEEEecccHHHHHH
Confidence 57899999999 999998863 3445666776 6544333
No 282
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=83.62 E-value=2.8 Score=22.56 Aligned_cols=56 Identities=16% Similarity=0.244 Sum_probs=32.6
Q ss_pred EEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCC----ChhHHhhcCCcccccEEEEEeCCeEE
Q 032982 48 YYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW----LPEAAKAFDLIDVLPTFVLVKRGKEI 109 (129)
Q Consensus 48 ~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~----~~~~~~~~~v~~~~Pt~~i~~~G~~~ 109 (129)
.|+.+.|+.|+...-.+....-. .....++... .+.+.+..... .+|++.. +|..+
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~p~~-~vP~l~~--~~~~i 62 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALLGIP---YEWVEVDILKGETRTPEFLALNPNG-EVPVLEL--DGRVL 62 (73)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC---cEEEEecCCCcccCCHHHHHhCCCC-CCCEEEE--CCEEE
Confidence 57789999999887776664322 4444555432 23333333344 8998863 46543
No 283
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=81.98 E-value=3 Score=25.32 Aligned_cols=33 Identities=9% Similarity=0.093 Sum_probs=24.9
Q ss_pred EEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCC
Q 032982 47 IYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL 84 (129)
Q Consensus 47 v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~ 84 (129)
..|+.+.|..|+.....|++ .++.+-.+|+-+.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~-----~~i~~~~~di~~~ 34 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLED-----KGIEPEVVKYLKN 34 (114)
T ss_pred EEEECCCCHHHHHHHHHHHH-----CCCCeEEEeccCC
Confidence 46789999999998888877 2566667776543
No 284
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=81.47 E-value=16 Score=25.59 Aligned_cols=54 Identities=15% Similarity=0.244 Sum_probs=38.7
Q ss_pred CCCeEEEEEEcC-----CChhHhhhhHHHHHHHHHcC-CcEEEEEECCCChhHHhh----cCCc
Q 032982 41 SDRLVVIYYTAA-----WCGPCKFIEPYVKDFAAMYT-DVQFIKIDVDWLPEAAKA----FDLI 94 (129)
Q Consensus 41 ~~k~~lv~f~~~-----~c~~C~~~~~~l~~~~~~~~-~v~~~~v~~~~~~~~~~~----~~v~ 94 (129)
.+.+.|..|++. .-+.-......|+++++.-+ ++++-.+|-+.+++..++ +|+.
T Consensus 24 ~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~ 87 (271)
T PF09822_consen 24 DEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQ 87 (271)
T ss_pred CCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCC
Confidence 445555555665 35566667777788888877 499999999877766665 8877
No 285
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=81.43 E-value=3.3 Score=25.05 Aligned_cols=32 Identities=6% Similarity=0.128 Sum_probs=24.0
Q ss_pred EEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCC
Q 032982 47 IYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW 83 (129)
Q Consensus 47 v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~ 83 (129)
..|+.+.|..|+.....|++ .++.|-.+|+-+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~-----~~i~~~~~di~~ 33 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEE-----AGIEPEIVEYLK 33 (112)
T ss_pred EEEECCCCHHHHHHHHHHHH-----CCCCeEEEeccc
Confidence 46789999999998777766 256677777654
No 286
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=79.40 E-value=5 Score=22.06 Aligned_cols=57 Identities=7% Similarity=0.084 Sum_probs=33.3
Q ss_pred EEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCC----ChhHHhhcCCcccccEEEEEeCCeEE
Q 032982 47 IYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW----LPEAAKAFDLIDVLPTFVLVKRGKEI 109 (129)
Q Consensus 47 v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~----~~~~~~~~~v~~~~Pt~~i~~~G~~~ 109 (129)
..|+.+.|+.|+..+-.+....- ...+..++... .+++. +.+-.|.+|+++ .+|..+
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl---~~e~~~v~~~~~~~~~~~~~-~inP~g~vP~L~--~~g~~l 62 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGL---RCEEYDVSLPLSEHNEPWFM-RLNPTGEVPVLI--HGDNII 62 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCC---CCEEEEecCCcCccCCHHHH-HhCcCCCCCEEE--ECCEEE
Confidence 35678889999777655554322 25556666532 23333 334444899885 466543
No 287
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=77.76 E-value=4.5 Score=23.01 Aligned_cols=33 Identities=27% Similarity=0.501 Sum_probs=20.5
Q ss_pred ccccEEEEEe-CCeEEEEE--eCCCHHHHHHHHHhh
Q 032982 95 DVLPTFVLVK-RGKEIDRV--VGAKKDELQMKTEKR 127 (129)
Q Consensus 95 ~~~Pt~~i~~-~G~~~~~~--~g~~~~~l~~~i~~~ 127 (129)
|.-|++++++ +|++.+++ .+-+.+++.+++.+.
T Consensus 40 G~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~k 75 (78)
T PF08806_consen 40 GAPPELVLLDEDGEEVERINIEKWKTDEIEEFLNEK 75 (78)
T ss_dssp S---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHh
Confidence 4788988885 88877764 334899999999765
No 288
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=76.68 E-value=13 Score=22.45 Aligned_cols=42 Identities=17% Similarity=0.355 Sum_probs=35.1
Q ss_pred cCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC--cEEEEEECC
Q 032982 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVD 82 (129)
Q Consensus 40 ~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~--v~~~~v~~~ 82 (129)
.++|++||.=.|+.|+.-. ....|+++.++|.+ +.++..-+.
T Consensus 19 y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcn 62 (108)
T PF00255_consen 19 YKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCN 62 (108)
T ss_dssp GTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBS
T ss_pred cCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehH
Confidence 4789999988999999999 88899999999973 777766654
No 289
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=76.12 E-value=9.5 Score=20.68 Aligned_cols=57 Identities=12% Similarity=0.133 Sum_probs=32.8
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCC----ChhHHhhcCCcccccEEEEEeCCeE
Q 032982 46 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW----LPEAAKAFDLIDVLPTFVLVKRGKE 108 (129)
Q Consensus 46 lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~----~~~~~~~~~v~~~~Pt~~i~~~G~~ 108 (129)
+-.|+.+.|+.|+...-.+....-. +....++... .+.+.+..... .+|.+. .+|..
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~P~~-~vP~l~--~~g~~ 62 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVD---YELVPVDLTKGEHKSPEHLARNPFG-QIPALE--DGDLK 62 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCC---cEEEEeCccccccCCHHHHhhCCCC-CCCEEE--ECCEE
Confidence 3455677799998888777664322 4444455431 23444444444 899874 35543
No 290
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=75.97 E-value=17 Score=22.92 Aligned_cols=105 Identities=12% Similarity=0.151 Sum_probs=57.3
Q ss_pred CCceEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhH-hhhhHHHHHHHHHcCC-cEEEEEECCCChh---HHhhc--
Q 032982 19 TPLVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPC-KFIEPYVKDFAAMYTD-VQFIKIDVDWLPE---AAKAF-- 91 (129)
Q Consensus 19 ~~~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C-~~~~~~l~~~~~~~~~-v~~~~v~~~~~~~---~~~~~-- 91 (129)
.....++.+.++.++.+.. ....++|.+ ++-|+=- ...+|........-.. =+++.|-.....+ -++.|
T Consensus 15 ~~Gf~eL~T~e~Vd~~~~~---~~GTtlVvV-NSVCGCAag~ARPa~~~al~~~kkPD~lvTVFAGqDkEAt~~aR~yf~ 90 (136)
T PF06491_consen 15 RAGFEELTTAEEVDEALKN---KEGTTLVVV-NSVCGCAAGNARPAAAMALQNDKKPDHLVTVFAGQDKEATAKAREYFE 90 (136)
T ss_dssp TTT-EE--SHHHHHHHHHH-----SEEEEEE-E-SSHHHHHTHHHHHHHHHHHSS--SEEEEEETTTSHHHHHHHHHTST
T ss_pred HcCccccCCHHHHHHHHhC---CCCcEEEEE-eccccccccccCHHHHHHHhCCCCCCceEEeccCCCHHHHHHHHHhcC
Confidence 3467788888888887752 456666655 6666533 3456665444333222 5666665554332 23443
Q ss_pred CCcccccEEEEEeCCeEEEEE-----eCCCHHHHHHHHHhh
Q 032982 92 DLIDVLPTFVLVKRGKEIDRV-----VGAKKDELQMKTEKR 127 (129)
Q Consensus 92 ~v~~~~Pt~~i~~~G~~~~~~-----~g~~~~~l~~~i~~~ 127 (129)
+...+-|.+.+|++|+.+..+ +|.+++++..-|...
T Consensus 91 ~~pPSSPS~ALfKdGelvh~ieRh~IEGr~a~~Ia~~L~~a 131 (136)
T PF06491_consen 91 PYPPSSPSIALFKDGELVHFIERHHIEGRPAEEIAENLQDA 131 (136)
T ss_dssp TS---SSEEEEEETTEEEEEE-GGGTTTS-HHHHHHHHHHH
T ss_pred CCCCCCchheeeeCCEEEEEeehhhcCCCCHHHHHHHHHHH
Confidence 333478899999999988754 355667666655543
No 291
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=73.95 E-value=17 Score=26.95 Aligned_cols=82 Identities=18% Similarity=0.198 Sum_probs=44.7
Q ss_pred CCCeEEEEEEcCCChhHhhhhH----HHHHHHHHcCC----cEEEEEECCCC-hhHH--hhcCCcc-cccEEEEEeCCeE
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEP----YVKDFAAMYTD----VQFIKIDVDWL-PEAA--KAFDLID-VLPTFVLVKRGKE 108 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~----~l~~~~~~~~~----v~~~~v~~~~~-~~~~--~~~~v~~-~~Pt~~i~~~G~~ 108 (129)
..++-+| .||.|-+..= ...++.+...+ +++..+-+-=| |.-+ ..||+.| +.-..++|++|+.
T Consensus 263 ~~g~~~I-----SCPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~ 337 (359)
T PF04551_consen 263 KRGPEII-----SCPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEV 337 (359)
T ss_dssp -SS-EEE-----E----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEE
T ss_pred cCCceee-----eCCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEE
Confidence 4455555 3777755433 33455555543 77777766532 2222 3667763 3346889999999
Q ss_pred EEEE-eCC-CHHHHHHHHHhh
Q 032982 109 IDRV-VGA-KKDELQMKTEKR 127 (129)
Q Consensus 109 ~~~~-~g~-~~~~l~~~i~~~ 127 (129)
+.+. ... -.++|.+.|+++
T Consensus 338 v~k~~~ee~~vd~L~~~I~~~ 358 (359)
T PF04551_consen 338 VKKVIPEEEIVDELIELIEEH 358 (359)
T ss_dssp EEEE-CSTCHHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHHHHhh
Confidence 9988 544 367888888765
No 292
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=73.56 E-value=4.4 Score=27.18 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=23.9
Q ss_pred HHhhcCCcccccEEEEEeCCeEEEEEeCC-CHHHHHHHH
Q 032982 87 AAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKT 124 (129)
Q Consensus 87 ~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~-~~~~l~~~i 124 (129)
.+.+.|+. ++|++++-.++..-+.+.|. ..+.+.+++
T Consensus 171 ~A~~~Gv~-GVP~fvv~~~~~~~e~fwG~Drl~~~~~~l 208 (209)
T cd03021 171 EALKYGAF-GLPWIVVTNDKGKTEMFFGSDRFEQVADFL 208 (209)
T ss_pred HHHHcCCC-CCCEEEEEcCCCCccceecCCcHHHHHHHh
Confidence 34567999 99999886532222356777 556665554
No 293
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=72.94 E-value=13 Score=26.52 Aligned_cols=98 Identities=13% Similarity=0.054 Sum_probs=55.7
Q ss_pred EeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC--cEEEEEECC---CChhHHhhcCCccccc
Q 032982 24 ELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVD---WLPEAAKAFDLIDVLP 98 (129)
Q Consensus 24 ~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~--v~~~~v~~~---~~~~~~~~~~v~~~~P 98 (129)
.-.+.+++...++.. ......|..|+.+|..=....|..++.. + + +.++..|-. .+..+..+|...++.|
T Consensus 58 tCKSa~~~~sDLe~l--~~~t~~IR~Y~sDCn~le~v~pAa~~~g--~-kv~lGiw~tdd~~~~~~~til~ay~~~~~~d 132 (305)
T COG5309 58 TCKSADQVASDLELL--ASYTHSIRTYGSDCNTLENVLPAAEASG--F-KVFLGIWPTDDIHDAVEKTILSAYLPYNGWD 132 (305)
T ss_pred CCcCHHHHHhHHHHh--ccCCceEEEeeccchhhhhhHHHHHhcC--c-eEEEEEeeccchhhhHHHHHHHHHhccCCCC
Confidence 344557777777665 4556688999988887555444443322 1 2 222222211 1224556676665788
Q ss_pred EEEEEeCCe-EEEEEeCCCHHHHHHHHHhh
Q 032982 99 TFVLVKRGK-EIDRVVGAKKDELQMKTEKR 127 (129)
Q Consensus 99 t~~i~~~G~-~~~~~~g~~~~~l~~~i~~~ 127 (129)
.+..+-=|+ .+.+ ...++++|.+.|...
T Consensus 133 ~v~~v~VGnEal~r-~~~tasql~~~I~~v 161 (305)
T COG5309 133 DVTTVTVGNEALNR-NDLTASQLIEYIDDV 161 (305)
T ss_pred ceEEEEechhhhhc-CCCCHHHHHHHHHHH
Confidence 766664333 3332 233899998888754
No 294
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=71.14 E-value=28 Score=23.21 Aligned_cols=60 Identities=15% Similarity=0.198 Sum_probs=34.9
Q ss_pred eEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCcccccEEEEEeCCeE
Q 032982 44 LVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKE 108 (129)
Q Consensus 44 ~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~~ 108 (129)
..+-.|+.+.|+.|+...-.++...- .+.+..+|....++-..+.+-.|.+|+++ .+|..
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~gl---~~e~~~v~~~~~~~~~~~~nP~g~VPvL~--~~g~~ 68 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKGV---SVEIEQVEKDNLPQDLIDLNPYQSVPTLV--DRELT 68 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCCC---CCEEEeCCcccCCHHHHHhCCCCCCCEEE--ECCEE
Confidence 33445556789999998876665321 24555666543332233344345899986 45543
No 295
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=70.65 E-value=9.6 Score=23.40 Aligned_cols=31 Identities=16% Similarity=0.516 Sum_probs=22.3
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEEC
Q 032982 46 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDV 81 (129)
Q Consensus 46 lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~ 81 (129)
+..|+.+.|..|+....-|++. ++.+-.+|+
T Consensus 3 itiy~~p~C~t~rka~~~L~~~-----gi~~~~~~y 33 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEH-----GIEYTFIDY 33 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCcEEEEe
Confidence 4567899999999988888773 444444444
No 296
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=70.41 E-value=6.3 Score=25.70 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=17.1
Q ss_pred hHHhhcCCcccccEEEEEeCCe
Q 032982 86 EAAKAFDLIDVLPTFVLVKRGK 107 (129)
Q Consensus 86 ~~~~~~~v~~~~Pt~~i~~~G~ 107 (129)
..+.++||. ++||+++..++.
T Consensus 160 ~~a~~~gv~-g~Ptfvv~~~~~ 180 (193)
T cd03025 160 KLARELGIN-GFPTLVLEDDNG 180 (193)
T ss_pred HHHHHcCCC-ccCEEEEEeCCe
Confidence 455688999 999999997765
No 297
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=69.75 E-value=12 Score=27.38 Aligned_cols=71 Identities=15% Similarity=0.244 Sum_probs=38.5
Q ss_pred CCCeEEEEEEcCCChhHhh-hhHHHHHHHHHcC---C-cEEEEEECCCC-h--hHHhhcCCccc-ccEEEEEeCCeEEEE
Q 032982 41 SDRLVVIYYTAAWCGPCKF-IEPYVKDFAAMYT---D-VQFIKIDVDWL-P--EAAKAFDLIDV-LPTFVLVKRGKEIDR 111 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~-~~~~l~~~~~~~~---~-v~~~~v~~~~~-~--~~~~~~~v~~~-~Pt~~i~~~G~~~~~ 111 (129)
...+.+| .=|-|+.|.. +.....++.+.+. . +++..+-+-=| | .--..+||.++ .-..++|++|+++.+
T Consensus 254 ~~g~~ii--SCPtCGR~~~dl~~~~~~ve~~l~~~~~~l~VAVMGCvVNGPGEak~ADiGIaggg~g~~~lF~~G~~~~k 331 (346)
T TIGR00612 254 ARGVEIV--ACPSCGRTGFDVEKVVRRVQEALFHLKTPLKVAVMGCVVNGPGEAKHADIGISGGGTGSAILFKRGKPKAK 331 (346)
T ss_pred cCCCeEE--ECCCCCCcCCCHHHHHHHHHHHHhcCCCCCEEEEECceecCCchhhccCeeeecCCCCceEEEECCEEeEe
Confidence 3445555 3444444432 3344455555443 2 66665544311 1 11246788743 447889999999776
Q ss_pred Ee
Q 032982 112 VV 113 (129)
Q Consensus 112 ~~ 113 (129)
..
T Consensus 332 v~ 333 (346)
T TIGR00612 332 QP 333 (346)
T ss_pred cC
Confidence 54
No 298
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=68.43 E-value=17 Score=19.57 Aligned_cols=58 Identities=12% Similarity=0.047 Sum_probs=31.7
Q ss_pred EEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCC-ChhHHhhcCCcccccEEEEEeCCeE
Q 032982 48 YYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW-LPEAAKAFDLIDVLPTFVLVKRGKE 108 (129)
Q Consensus 48 ~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~-~~~~~~~~~v~~~~Pt~~i~~~G~~ 108 (129)
.|+.+.|++|....-.+....... .+..+.+|... .+++.+..... .+|.++. .+|..
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~~~i-~~~~~~~~~~~~~~~~~~~~p~~-~vP~l~~-~~g~~ 61 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETGLGD-DVELVLVNPWSDDESLLAVNPLG-KIPALVL-DDGEA 61 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhCCCC-CcEEEEcCcccCChHHHHhCCCC-CCCEEEE-CCCCE
Confidence 457888999998776665521111 24445555333 33433333444 8997753 35543
No 299
>COG3411 Ferredoxin [Energy production and conversion]
Probab=68.25 E-value=16 Score=19.97 Aligned_cols=30 Identities=10% Similarity=0.082 Sum_probs=21.9
Q ss_pred cccEEEEEeCCeEEEEEeCCCHHHHHHHHHhhh
Q 032982 96 VLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRR 128 (129)
Q Consensus 96 ~~Pt~~i~~~G~~~~~~~g~~~~~l~~~i~~~~ 128 (129)
.-|++++|.+|.-.. ..+++...+++++|+
T Consensus 16 ~gPvl~vYpegvWY~---~V~p~~a~rIv~~hl 45 (64)
T COG3411 16 DGPVLVVYPEGVWYT---RVDPEDARRIVQSHL 45 (64)
T ss_pred cCCEEEEecCCeeEe---ccCHHHHHHHHHHHH
Confidence 469999999993222 228888888888875
No 300
>PRK10853 putative reductase; Provisional
Probab=68.17 E-value=11 Score=23.13 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=23.7
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECC
Q 032982 46 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD 82 (129)
Q Consensus 46 lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~ 82 (129)
+..|+.+.|..|+.....|++ .++.+-.+|+-
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~-----~~i~~~~~d~~ 33 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEA-----QGIDYRFHDYR 33 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHH-----cCCCcEEeehc
Confidence 346779999999998888876 25666666654
No 301
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=68.11 E-value=17 Score=21.73 Aligned_cols=32 Identities=19% Similarity=0.475 Sum_probs=21.6
Q ss_pred EEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCCh
Q 032982 49 YTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP 85 (129)
Q Consensus 49 f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~ 85 (129)
|+.+.|..|+.....|++ .++.+-.+|+.+.+
T Consensus 1 Y~~~~C~t~rka~~~L~~-----~gi~~~~~d~~k~p 32 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEE-----NGIEYEFIDYKKEP 32 (110)
T ss_dssp EE-TT-HHHHHHHHHHHH-----TT--EEEEETTTS-
T ss_pred CcCCCCHHHHHHHHHHHH-----cCCCeEeehhhhCC
Confidence 578899999999888876 46788888887643
No 302
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=67.79 E-value=9.6 Score=23.28 Aligned_cols=52 Identities=19% Similarity=0.388 Sum_probs=36.1
Q ss_pred CChhHhhhhHHHHHHHHHcCCcEEEEEECCCCh-hHHhhcCCc-ccccEEEEEe
Q 032982 53 WCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP-EAAKAFDLI-DVLPTFVLVK 104 (129)
Q Consensus 53 ~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~-~~~~~~~v~-~~~Pt~~i~~ 104 (129)
.|++|..++..|...-..-..+.+.+|+.-... ++....|-. ++.|++++-.
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~ 76 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLAD 76 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCC
Confidence 499999999888776555445899999987543 334444442 3789887654
No 303
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=67.35 E-value=21 Score=20.35 Aligned_cols=52 Identities=17% Similarity=0.153 Sum_probs=37.1
Q ss_pred HHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCc
Q 032982 37 ASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLI 94 (129)
Q Consensus 37 ~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~ 94 (129)
++..+++..+| |-+.+|++ .....+..+.+.+ ++.++.++ +..++.+..|..
T Consensus 21 kai~~gkaklV-iiA~D~~~--~~~~~i~~~c~~~-~Vp~~~~~--s~~eLG~a~G~~ 72 (82)
T PRK13602 21 KALKRGSVKEV-VVAEDADP--RLTEKVEALANEK-GVPVSKVD--SMKKLGKACGIE 72 (82)
T ss_pred HHHHcCCeeEE-EEECCCCH--HHHHHHHHHHHHc-CCCEEEEC--CHHHHHHHHCCC
Confidence 33445666655 45888888 4777888888775 78887777 447888888877
No 304
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=67.34 E-value=32 Score=22.46 Aligned_cols=85 Identities=20% Similarity=0.210 Sum_probs=47.5
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHH-cCC--c-EEEEEECCCCh-----------------------------hH
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEPYVKDFAAM-YTD--V-QFIKIDVDWLP-----------------------------EA 87 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~-~~~--v-~~~~v~~~~~~-----------------------------~~ 87 (129)
.+|+.+|..-+-.-..-....|.++.+.+. ++. + ...-||.|... .+
T Consensus 36 ~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~dDAi~gt~~fVrss~e~~kk~~p~s~~vlD~~G~~ 115 (160)
T PF09695_consen 36 PGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLDDAIWGTGGFVRSSAEDSKKEFPWSQFVLDSNGVV 115 (160)
T ss_pred CCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCccceeEEEEEecccccccchHHHHHHHHHhhhhCCCcEEEEcCCCce
Confidence 577777765555555545555666666665 553 2 23334554211 11
Q ss_pred HhhcCCcccccEEEEE-eCCeEEEEEeCC-CHHHHHHHHH
Q 032982 88 AKAFDLIDVLPTFVLV-KRGKEIDRVVGA-KKDELQMKTE 125 (129)
Q Consensus 88 ~~~~~v~~~~Pt~~i~-~~G~~~~~~~g~-~~~~l~~~i~ 125 (129)
.+..++...--.++++ ++|++.....|. +++++.+.|.
T Consensus 116 ~~aW~L~~~~SaiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~ 155 (160)
T PF09695_consen 116 RKAWQLQEESSAIIVLDKQGKVQFVKEGALSPAEVQQVIA 155 (160)
T ss_pred eccccCCCCCceEEEEcCCccEEEEECCCCCHHHHHHHHH
Confidence 1122222111234444 789999999998 9988887765
No 305
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=66.45 E-value=40 Score=23.30 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCCCeEEEEEEc---CCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCcccccE-EEEEeCC
Q 032982 31 WRSQYEASKQSDRLVVIYYTA---AWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPT-FVLVKRG 106 (129)
Q Consensus 31 ~~~~~~~~~~~~k~~lv~f~~---~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~~Pt-~~i~~~G 106 (129)
++..+....+..++++.+=.. |.|+.++....+|+.. ++.|...|+-++.++.+-...-..+|| --+|-+|
T Consensus 128 ~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~-----nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~G 202 (227)
T KOG0911|consen 128 LDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSH-----NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKG 202 (227)
T ss_pred HHHHHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHc-----CCCeeEEeccCCHHHHHHhhhhcCCCCccceeECC
Confidence 555566655444444444444 4566666666666542 577888999888776543322125676 3566788
Q ss_pred eEEE
Q 032982 107 KEID 110 (129)
Q Consensus 107 ~~~~ 110 (129)
.-++
T Consensus 203 EFiG 206 (227)
T KOG0911|consen 203 EFIG 206 (227)
T ss_pred Eecc
Confidence 6554
No 306
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=65.35 E-value=18 Score=22.53 Aligned_cols=32 Identities=16% Similarity=0.183 Sum_probs=23.5
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECC
Q 032982 46 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD 82 (129)
Q Consensus 46 lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~ 82 (129)
+..|+.+.|..|+.....|++. ++.|-.+|+-
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~-----gi~~~~~d~~ 34 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKAS-----GHDVEVQDIL 34 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCcEEEecc
Confidence 4567899999999988888763 5555555553
No 307
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=64.87 E-value=8 Score=30.40 Aligned_cols=71 Identities=14% Similarity=0.257 Sum_probs=47.2
Q ss_pred HHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHH---HHHHHHcC-CcEEEEEECCCChhHHhh--------cCCcccccE
Q 032982 32 RSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYV---KDFAAMYT-DVQFIKIDVDWLPEAAKA--------FDLIDVLPT 99 (129)
Q Consensus 32 ~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l---~~~~~~~~-~v~~~~v~~~~~~~~~~~--------~~v~~~~Pt 99 (129)
++.++++..++|+.++...-+-|-.|+.|...- ++..+... +..-+.||-++.|++-+- .|= |+.|.
T Consensus 102 qeaf~kar~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~-GGWPm 180 (786)
T KOG2244|consen 102 QEAFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGG-GGWPM 180 (786)
T ss_pred HHHHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCC-CCCce
Confidence 456777788999999999989999999887643 33444442 244455666666665442 233 38887
Q ss_pred EEEE
Q 032982 100 FVLV 103 (129)
Q Consensus 100 ~~i~ 103 (129)
-+++
T Consensus 181 sV~L 184 (786)
T KOG2244|consen 181 SVFL 184 (786)
T ss_pred eEEe
Confidence 6665
No 308
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=62.48 E-value=22 Score=24.56 Aligned_cols=30 Identities=13% Similarity=0.239 Sum_probs=24.5
Q ss_pred eEEEEEEcCCChhHhhhhHHHHHHHHHcCC
Q 032982 44 LVVIYYTAAWCGPCKFIEPYVKDFAAMYTD 73 (129)
Q Consensus 44 ~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~ 73 (129)
..|-.|...-||.|-...+.|+++...+++
T Consensus 6 i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~ 35 (225)
T COG2761 6 IEIDVFSDVVCPWCYIGKRRLEKALAEYPQ 35 (225)
T ss_pred EEEEEEeCCcCchhhcCHHHHHHHHHhcCc
Confidence 444455566799999999999999999985
No 309
>PRK10026 arsenate reductase; Provisional
Probab=61.98 E-value=20 Score=22.84 Aligned_cols=32 Identities=13% Similarity=0.203 Sum_probs=23.6
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECC
Q 032982 46 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD 82 (129)
Q Consensus 46 lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~ 82 (129)
+..++.+.|..|+.....|++. ++.|-.+|+-
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~-----gi~~~~~d~~ 35 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS-----GTEPTIIHYL 35 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCcEEEeee
Confidence 4567899999999998888763 5555556553
No 310
>KOG2990 consensus C2C2-type Zn-finger protein [Function unknown]
Probab=61.79 E-value=9.4 Score=27.25 Aligned_cols=42 Identities=21% Similarity=0.396 Sum_probs=27.4
Q ss_pred chhHHHHHHHHHhcCCCeEEEEE---EcCCChhHhhhhHHHHHHHHH
Q 032982 27 SKHQWRSQYEASKQSDRLVVIYY---TAAWCGPCKFIEPYVKDFAAM 70 (129)
Q Consensus 27 ~~~~~~~~~~~~~~~~k~~lv~f---~~~~c~~C~~~~~~l~~~~~~ 70 (129)
...-+.+.-.+. .....||.| |.-||..|+.+...=-++.++
T Consensus 27 g~h~lrerarKi--~~gilvIRFEMPynIWC~gC~nhIgmGvRyNAe 71 (317)
T KOG2990|consen 27 GTHALRERARKI--DQGILVIRFEMPYNIWCDGCKNHIGMGVRYNAE 71 (317)
T ss_pred cchhHHHHHHhh--ccceEEEEEecccchhhccHHHhhhccceechh
Confidence 334444444443 566888888 788999999887765554443
No 311
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=61.73 E-value=48 Score=23.96 Aligned_cols=96 Identities=17% Similarity=0.048 Sum_probs=49.5
Q ss_pred echhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCC-h---hHHhhcCCcccccEEE
Q 032982 26 QSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL-P---EAAKAFDLIDVLPTFV 101 (129)
Q Consensus 26 ~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~-~---~~~~~~~v~~~~Pt~~ 101 (129)
.+.++++..+......-.-+.+.++.+.|..-..-.....++++..+-+.++.-.-+.| . +++++++ .|++.
T Consensus 166 ~~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~SsNT~kL~~i~~~~~----~~t~~ 241 (298)
T PRK01045 166 LSVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKNSSNSNRLREVAEEAG----APAYL 241 (298)
T ss_pred CcHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCCccHHHHHHHHHHHC----CCEEE
Confidence 34455665555443332223333378888888777777778877542222222222222 1 3444443 34444
Q ss_pred E----------EeCCeEEEEEeCC-CHHHHHHHHH
Q 032982 102 L----------VKRGKEIDRVVGA-KKDELQMKTE 125 (129)
Q Consensus 102 i----------~~~G~~~~~~~g~-~~~~l~~~i~ 125 (129)
+ +++-+.+.--.|. +++.+.+-+.
T Consensus 242 Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV~ 276 (298)
T PRK01045 242 IDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEVI 276 (298)
T ss_pred ECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHHH
Confidence 4 2333456666777 6776655443
No 312
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=60.32 E-value=13 Score=24.10 Aligned_cols=25 Identities=12% Similarity=0.005 Sum_probs=22.1
Q ss_pred EEEcCCChhHhhhhHHHHHHHHHcC
Q 032982 48 YYTAAWCGPCKFIEPYVKDFAAMYT 72 (129)
Q Consensus 48 ~f~~~~c~~C~~~~~~l~~~~~~~~ 72 (129)
+|+..-||+|-...+.++++...++
T Consensus 3 ~~~D~~cP~cy~~~~~l~~~~~~~~ 27 (192)
T cd03022 3 FYFDFSSPYSYLAHERLPALAARHG 27 (192)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHhC
Confidence 4677899999999999999998885
No 313
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=59.51 E-value=22 Score=20.85 Aligned_cols=29 Identities=7% Similarity=0.087 Sum_probs=22.1
Q ss_pred cccEEEEEe--CCeEEEEEeCC-CHHHHHHHHHhhh
Q 032982 96 VLPTFVLVK--RGKEIDRVVGA-KKDELQMKTEKRR 128 (129)
Q Consensus 96 ~~Pt~~i~~--~G~~~~~~~g~-~~~~l~~~i~~~~ 128 (129)
.=|++++|. +|.- .+. +++.+..+|++++
T Consensus 52 ~gp~vvvyP~~~g~w----y~~v~p~~v~~Iv~~hl 83 (97)
T cd03062 52 FAGNVIIYPKGDGIW----YGRVTPEHVPPIVDRLI 83 (97)
T ss_pred cCCEEEEEeCCCeeE----EeecCHHHHHHHHHHHh
Confidence 679999998 6633 343 8888999988775
No 314
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=57.78 E-value=36 Score=19.85 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=12.4
Q ss_pred CcEEEEEECCCChhHH
Q 032982 73 DVQFIKIDVDWLPEAA 88 (129)
Q Consensus 73 ~v~~~~v~~~~~~~~~ 88 (129)
++.|-.+|++.+++..
T Consensus 30 ~I~f~eiDI~~d~~~r 45 (92)
T cd03030 30 KIEFEEVDISMNEENR 45 (92)
T ss_pred CCceEEEecCCCHHHH
Confidence 5999999998766543
No 315
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=56.78 E-value=47 Score=20.88 Aligned_cols=27 Identities=11% Similarity=0.385 Sum_probs=20.5
Q ss_pred cCCChhHhhhhHHHHHHHHHcCCcEEEEEE
Q 032982 51 AAWCGPCKFIEPYVKDFAAMYTDVQFIKID 80 (129)
Q Consensus 51 ~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~ 80 (129)
.+-|.-|. ..++++.++||++.+..++
T Consensus 105 ~~pC~SC~---~vi~qF~~~~pni~~~v~~ 131 (133)
T PF14424_consen 105 LPPCESCS---NVIEQFKKDFPNIKVNVVY 131 (133)
T ss_pred CCcChhHH---HHHHHHHHHCCCcEEEEec
Confidence 45577776 5889999999997776554
No 316
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=54.19 E-value=40 Score=19.29 Aligned_cols=53 Identities=9% Similarity=0.155 Sum_probs=36.6
Q ss_pred hcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCcccccE
Q 032982 39 KQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPT 99 (129)
Q Consensus 39 ~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~~Pt 99 (129)
..+++..+| |-+.+|+. .....+..+.+.+ ++.++ ...+..+|.+..|++ +|+
T Consensus 20 Ik~gkakLV-iiA~Da~~--~~~k~i~~~c~~~-~Vpv~--~~~t~~eLG~A~G~~--v~a 72 (82)
T PRK13601 20 ITNCNVLQV-YIAKDAEE--HVTKKIKELCEEK-SIKIV--YIDTMKELGVMCGID--VGA 72 (82)
T ss_pred HHcCCeeEE-EEeCCCCH--HHHHHHHHHHHhC-CCCEE--EeCCHHHHHHHHCCc--cCe
Confidence 445555555 56888985 6677777777765 67774 444567899999987 553
No 317
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=52.08 E-value=31 Score=22.57 Aligned_cols=25 Identities=12% Similarity=0.145 Sum_probs=22.1
Q ss_pred EEEcCCChhHhhhhHHHHHHHHHcC
Q 032982 48 YYTAAWCGPCKFIEPYVKDFAAMYT 72 (129)
Q Consensus 48 ~f~~~~c~~C~~~~~~l~~~~~~~~ 72 (129)
.|+..-||+|-...+.|.++.++++
T Consensus 3 ~~~D~~cP~cyl~~~~l~~~~~~~~ 27 (201)
T cd03024 3 IWSDVVCPWCYIGKRRLEKALAELG 27 (201)
T ss_pred EEecCcCccHHHHHHHHHHHHHhCC
Confidence 4667889999999999999999984
No 318
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=49.51 E-value=90 Score=21.95 Aligned_cols=84 Identities=15% Similarity=0.210 Sum_probs=49.8
Q ss_pred CCCeEEEEE-EcCCChhHhh--hhHHHHHHHHHcC-CcEEEEEECCCC--------------------------------
Q 032982 41 SDRLVVIYY-TAAWCGPCKF--IEPYVKDFAAMYT-DVQFIKIDVDWL-------------------------------- 84 (129)
Q Consensus 41 ~~k~~lv~f-~~~~c~~C~~--~~~~l~~~~~~~~-~v~~~~v~~~~~-------------------------------- 84 (129)
.+++.||.+ +..|-..|.. ..|..+++...-. .++++.|++.++
T Consensus 121 ~gkvSlV~l~s~~~ge~~~~sw~~p~~~~~~~~~~~~~q~v~In~~e~~~k~~l~~~~~~~lrk~ip~~~h~~Yf~~~~~ 200 (252)
T PF05176_consen 121 RGKVSLVCLFSSAWGEEMVDSWTSPFLEDFLQEPYGRVQIVEINLIENWLKSWLVKLFMGSLRKSIPEERHDRYFIVYRG 200 (252)
T ss_pred CCceEEEEEeehHHHHHHHHHHhhHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhhhhhccCCHHHCceEEEEeCC
Confidence 455555544 4555444432 3345555554432 488999987532
Q ss_pred ---hhHHhhcCCccccc--E-EEEEeCCeEEEEEeCC-CHHHHHHHHH
Q 032982 85 ---PEAAKAFDLIDVLP--T-FVLVKRGKEIDRVVGA-KKDELQMKTE 125 (129)
Q Consensus 85 ---~~~~~~~~v~~~~P--t-~~i~~~G~~~~~~~g~-~~~~l~~~i~ 125 (129)
..+.+.+++. ..- . +++..+|++.-.-.|. +++++..+..
T Consensus 201 ~~~~~iRe~Lgi~-N~~~GYvyLVD~~grIRWagsG~At~~E~~~L~k 247 (252)
T PF05176_consen 201 QLSDDIREALGIN-NSYVGYVYLVDPNGRIRWAGSGPATPEELESLWK 247 (252)
T ss_pred cccHHHHHHhCCC-CCCcCeEEEECCCCeEEeCccCCCCHHHHHHHHH
Confidence 2444566666 433 3 3333689887777788 8999887764
No 319
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=49.36 E-value=86 Score=21.70 Aligned_cols=73 Identities=18% Similarity=0.271 Sum_probs=47.1
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCcccccEEEEEeCCeEEEEEeCC-CHHHHHHHH
Q 032982 46 VIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKT 124 (129)
Q Consensus 46 lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~-~~~~l~~~i 124 (129)
+=.|....|..|-.+...++.- ...+++++ ++....+.++-+-+|. ++|.++ .+|+.+.. ++ +++++++.+
T Consensus 13 VkI~~HktC~ssy~Lf~~L~nk-gll~~Vki--i~a~~p~f~~~~~~V~-SvP~Vf--~DGel~~~--dpVdp~~ies~~ 84 (265)
T COG5494 13 VKIFTHKTCVSSYMLFEYLENK-GLLGKVKI--IDAELPPFLAFEKGVI-SVPSVF--IDGELVYA--DPVDPEEIESIL 84 (265)
T ss_pred EEEEEecchHHHHHHHHHHHhc-CCCCCceE--EEcCCChHHHhhccee-ecceEE--EcCeEEEc--CCCCHHHHHHHH
Confidence 3345677888887776666541 11334555 4555566666666788 899875 57776543 55 888888877
Q ss_pred Hh
Q 032982 125 EK 126 (129)
Q Consensus 125 ~~ 126 (129)
+.
T Consensus 85 ~G 86 (265)
T COG5494 85 SG 86 (265)
T ss_pred cC
Confidence 54
No 320
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=47.80 E-value=7.2 Score=24.82 Aligned_cols=12 Identities=25% Similarity=0.570 Sum_probs=11.1
Q ss_pred CChhHhhhhHHH
Q 032982 53 WCGPCKFIEPYV 64 (129)
Q Consensus 53 ~c~~C~~~~~~l 64 (129)
.||+|+++.|.|
T Consensus 11 ~CPhCRQ~ipAL 22 (163)
T TIGR02652 11 RCPHCRQNIPAL 22 (163)
T ss_pred cCchhhcccchh
Confidence 699999999988
No 321
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=47.68 E-value=94 Score=21.65 Aligned_cols=49 Identities=12% Similarity=0.131 Sum_probs=32.0
Q ss_pred ChhHhhhhHHHHHHHHHcCC--cEEEEEECCCChhHHhhcC-CcccccEEEEEeCCeEE
Q 032982 54 CGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWLPEAAKAFD-LIDVLPTFVLVKRGKEI 109 (129)
Q Consensus 54 c~~C~~~~~~l~~~~~~~~~--v~~~~v~~~~~~~~~~~~~-v~~~~Pt~~i~~~G~~~ 109 (129)
||+.++.+=.+ +.++ ..++..|...-+++--+.+ +.+.+|.++ .||+.+
T Consensus 18 sPfa~R~~iaL-----~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~--Hn~k~i 69 (231)
T KOG0406|consen 18 SPFAQRVRIAL-----KLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLE--HNGKPI 69 (231)
T ss_pred ChHHHHHHHHH-----HhcCCceEEEecCCCCCCHHHHHhccccccCCEEE--ECCcee
Confidence 88877654333 3355 6777777765556665555 655899876 777763
No 322
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=47.53 E-value=85 Score=22.51 Aligned_cols=96 Identities=16% Similarity=0.093 Sum_probs=48.3
Q ss_pred chhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEE-EECCCCh---hHHhhcCCcccccEEEE
Q 032982 27 SKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIK-IDVDWLP---EAAKAFDLIDVLPTFVL 102 (129)
Q Consensus 27 ~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~-v~~~~~~---~~~~~~~v~~~~Pt~~i 102 (129)
+.+++...+......-.-.-+.++.+.|..-..-.....++++..+-+.++. -+.+... +++++. +.|++.+
T Consensus 165 ~~~~~~~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~vD~miVVGg~nSsNT~rL~ei~~~~----~~~t~~I 240 (280)
T TIGR00216 165 SQEDTKEIVAELKARVPQKEVPVFNTICYATQNRQDAVKELAPEVDLMIVIGGKNSSNTTRLYEIAEEH----GPPSYLI 240 (280)
T ss_pred cHHHHHHHHHHHHHhCCCcCCCCCCCcccccHHHHHHHHHHHhhCCEEEEECCCCCchHHHHHHHHHHh----CCCEEEE
Confidence 4455555554432221002223468888887777777777777642222222 1222111 234443 3456554
Q ss_pred ----------EeCCeEEEEEeCC-CHHHHHHHHHh
Q 032982 103 ----------VKRGKEIDRVVGA-KKDELQMKTEK 126 (129)
Q Consensus 103 ----------~~~G~~~~~~~g~-~~~~l~~~i~~ 126 (129)
+++.+.+.--.|. +++.+.+-+.+
T Consensus 241 e~~~el~~~~l~~~~~VGiTAGASTP~~li~eVi~ 275 (280)
T TIGR00216 241 ETAEELPEEWLKGVKVVGITAGASTPDWIIEEVIR 275 (280)
T ss_pred CChHHCCHHHhCCCCEEEEEecCCCCHHHHHHHHH
Confidence 2344456767788 67766555443
No 323
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=47.53 E-value=13 Score=26.56 Aligned_cols=93 Identities=18% Similarity=0.102 Sum_probs=46.7
Q ss_pred chhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCC-------hhHHhhcCCcccccE
Q 032982 27 SKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL-------PEAAKAFDLIDVLPT 99 (129)
Q Consensus 27 ~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~-------~~~~~~~~v~~~~Pt 99 (129)
+.+++.+.+........-....++.+.|..-..-.....++++.. + +..|=.+.+ -+++++.+ .|+
T Consensus 166 ~~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~v-D--~miVIGg~~SsNT~kL~eia~~~~----~~t 238 (281)
T PF02401_consen 166 SVEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEV-D--AMIVIGGKNSSNTRKLAEIAKEHG----KPT 238 (281)
T ss_dssp -HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCS-S--EEEEES-TT-HHHHHHHHHHHHCT----TCE
T ss_pred cHHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhC-C--EEEEecCCCCccHHHHHHHHHHhC----CCE
Confidence 445566655554434444443478999998887777777777653 3 222222222 13444443 345
Q ss_pred EEE----------EeCCeEEEEEeCC-CHHHHHHHHHh
Q 032982 100 FVL----------VKRGKEIDRVVGA-KKDELQMKTEK 126 (129)
Q Consensus 100 ~~i----------~~~G~~~~~~~g~-~~~~l~~~i~~ 126 (129)
+.+ +++.+.+.--.|. +++.+.+-+.+
T Consensus 239 ~~Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eVi~ 276 (281)
T PF02401_consen 239 YHIETADELDPEWLKGVKKVGITAGASTPDWIIEEVID 276 (281)
T ss_dssp EEESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHHHH
T ss_pred EEeCCccccCHhHhCCCCEEEEEccCCCCHHHHHHHHH
Confidence 554 2344567777788 77776655544
No 324
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=47.46 E-value=15 Score=25.70 Aligned_cols=58 Identities=12% Similarity=0.015 Sum_probs=38.7
Q ss_pred HHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCc
Q 032982 35 YEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLI 94 (129)
Q Consensus 35 ~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~ 94 (129)
+..+...++++. -+.+.++.++.....++++.++.....+..++.++...+..+||+.
T Consensus 214 v~~A~~~g~pv~--~~~p~s~~a~~~~~la~ell~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (275)
T TIGR01287 214 VQKAEIRKMTVI--EYDPESEQANEYRELAKKIYENTEFVIPTPLTMDELEEILMKFGIM 271 (275)
T ss_pred HHHHHHcCCceE--EeCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 334444566653 3578888888888888887765533566666666667777787764
No 325
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=47.34 E-value=94 Score=21.57 Aligned_cols=49 Identities=10% Similarity=-0.062 Sum_probs=34.2
Q ss_pred chhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECC
Q 032982 27 SKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVD 82 (129)
Q Consensus 27 ~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~ 82 (129)
+.+++.+.++....++.-+|| . ....+.+.+.++++++|+++|+.+|..
T Consensus 42 ~~~~~~~~i~~~~~~g~dlIi-~------~g~~~~~~~~~vA~~~p~~~F~~~d~~ 90 (258)
T cd06353 42 EGADAERVLRELAAQGYDLIF-G------TSFGFMDAALKVAKEYPDVKFEHCSGY 90 (258)
T ss_pred chHhHHHHHHHHHHcCCCEEE-E------CchhhhHHHHHHHHHCCCCEEEECCCC
Confidence 446677777765544433333 3 446678889999999999999998753
No 326
>PHA02151 hypothetical protein
Probab=47.33 E-value=13 Score=24.31 Aligned_cols=16 Identities=13% Similarity=0.503 Sum_probs=12.5
Q ss_pred cCCCeEEEEEEcCCCh
Q 032982 40 QSDRLVVIYYTAAWCG 55 (129)
Q Consensus 40 ~~~k~~lv~f~~~~c~ 55 (129)
+.+..-.|+||..||.
T Consensus 201 nr~h~~~v~fy~kwct 216 (217)
T PHA02151 201 NRNHDRYVHFYKKWCT 216 (217)
T ss_pred cccCceEEEEehhhcc
Confidence 3455678899999995
No 327
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=47.26 E-value=7.2 Score=24.77 Aligned_cols=12 Identities=25% Similarity=0.600 Sum_probs=11.1
Q ss_pred CChhHhhhhHHH
Q 032982 53 WCGPCKFIEPYV 64 (129)
Q Consensus 53 ~c~~C~~~~~~l 64 (129)
.||+|+++.|.|
T Consensus 8 ~CPhCRq~ipAL 19 (161)
T PF09654_consen 8 QCPHCRQTIPAL 19 (161)
T ss_pred cCchhhcccchh
Confidence 699999999988
No 328
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=45.85 E-value=1.4e+02 Score=23.20 Aligned_cols=56 Identities=14% Similarity=0.224 Sum_probs=31.2
Q ss_pred CCeEEEEEEcCC-ChhHhhhhHHHHHHHHHcCC--cEEEEEE-CCCChhHHhhcCCccccc
Q 032982 42 DRLVVIYYTAAW-CGPCKFIEPYVKDFAAMYTD--VQFIKID-VDWLPEAAKAFDLIDVLP 98 (129)
Q Consensus 42 ~k~~lv~f~~~~-c~~C~~~~~~l~~~~~~~~~--v~~~~v~-~~~~~~~~~~~~v~~~~P 98 (129)
-..++|.|+.+- ...=......+.++.++++. +.++.+. -.-....+-+.|+. ..|
T Consensus 281 ~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~~~~fsr~~~Ld~g~~-~~~ 340 (499)
T PF05679_consen 281 VFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISVKTGEFSRGAALDVGAK-KFP 340 (499)
T ss_pred eEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEecCCCccHHHHHHhhcc-cCC
Confidence 335677777743 33333456677888888876 6666665 22223334444555 444
No 329
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=44.65 E-value=28 Score=23.63 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=21.1
Q ss_pred ECCCChhHHhhcCCcccccEEEEEeCCeEE
Q 032982 80 DVDWLPEAAKAFDLIDVLPTFVLVKRGKEI 109 (129)
Q Consensus 80 ~~~~~~~~~~~~~v~~~~Pt~~i~~~G~~~ 109 (129)
..|....+.++|+|+ .+|.++- .+|+.+
T Consensus 170 YfdQ~g~Lt~rF~I~-~VPavV~-q~g~~l 197 (202)
T TIGR02743 170 YFDQHGKLTQKFGIK-HVPARVS-QEGLRL 197 (202)
T ss_pred EEcCCchHhhccCce-eeceEEE-ecCCEE
Confidence 345667889999999 9999864 566553
No 330
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=44.04 E-value=79 Score=19.73 Aligned_cols=25 Identities=12% Similarity=-0.061 Sum_probs=13.0
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHH
Q 032982 41 SDRLVVIYYTAAWCGPCKFIEPYVK 65 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C~~~~~~l~ 65 (129)
..+.++|.+.+-+.-+...+...++
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl~~ii~ 74 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQLDELLD 74 (150)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHH
Confidence 3466666666666544333333333
No 331
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=42.08 E-value=82 Score=25.28 Aligned_cols=74 Identities=24% Similarity=0.353 Sum_probs=45.3
Q ss_pred HHHHHHhcCCCeEEEEEEcCCChhHhh------hhHHHHHHHH----------HcCC-cEEEEEE-C----CCChhHHhh
Q 032982 33 SQYEASKQSDRLVVIYYTAAWCGPCKF------IEPYVKDFAA----------MYTD-VQFIKID-V----DWLPEAAKA 90 (129)
Q Consensus 33 ~~~~~~~~~~k~~lv~f~~~~c~~C~~------~~~~l~~~~~----------~~~~-v~~~~v~-~----~~~~~~~~~ 90 (129)
+.+..+...++|++|.=+++-.++|.. +.|.+++... +.|. .-||.++ + +..-+-..+
T Consensus 334 k~irrAV~egRPIiiRHHaDaDG~~agvAlE~AilplI~~~~~d~DAeyh~~KRrPskAPfYeleDvtrDl~~aLED~~R 413 (715)
T COG1107 334 KEIRRAVLEGRPIIIRHHADADGYCAGVALEKAILPLIEDVHPDEDAEYHLFKRRPSKAPFYELEDVTRDLNFALEDAHR 413 (715)
T ss_pred HHHHHHHhcCCceEEecccCcccccchhhHHHHHHHHHHHhCCChhhhhHHhhcCcccCCceeHHhhhhhHHHHHHHHHh
Confidence 345566678999999999998888843 3444444322 2222 4455442 1 112233467
Q ss_pred cCCcccccEEEEEeCCeE
Q 032982 91 FDLIDVLPTFVLVKRGKE 108 (129)
Q Consensus 91 ~~v~~~~Pt~~i~~~G~~ 108 (129)
+|- ..|.+++..||..
T Consensus 414 hGq--KlPL~VlvDnGsT 429 (715)
T COG1107 414 HGQ--KLPLLVLVDNGST 429 (715)
T ss_pred cCC--ccceEEEEcCCCc
Confidence 774 4999999998853
No 332
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=41.77 E-value=44 Score=24.72 Aligned_cols=53 Identities=11% Similarity=0.191 Sum_probs=40.2
Q ss_pred cEEEEEECCCChhHHhhcCCcccccEEEEE--eCCeEEEEEeCC-CHHHHHHHHHhh
Q 032982 74 VQFIKIDVDWLPEAAKAFDLIDVLPTFVLV--KRGKEIDRVVGA-KKDELQMKTEKR 127 (129)
Q Consensus 74 v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~--~~G~~~~~~~g~-~~~~l~~~i~~~ 127 (129)
+..+..|.++...+..-|.+. .+|.+.++ .-|+.+.+..|. .+++|.+-+.++
T Consensus 133 wllV~~Dtseg~~~~~Fy~~~-~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~F 188 (356)
T KOG1364|consen 133 WLLVLDDTSEGQPFSAFYHIS-SLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEF 188 (356)
T ss_pred EEEEeeccCCCCchhhheecc-CCceEEEECCchhhhhhhhccccCHHHHHHHHHHH
Confidence 666677777888888999999 99977777 468888888777 777766555443
No 333
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=41.71 E-value=57 Score=17.44 Aligned_cols=69 Identities=12% Similarity=-0.004 Sum_probs=37.1
Q ss_pred EEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCC-cccccEEEEEeCCeEEEEEeCCCHHHHHHHHHh
Q 032982 48 YYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDL-IDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEK 126 (129)
Q Consensus 48 ~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v-~~~~Pt~~i~~~G~~~~~~~g~~~~~l~~~i~~ 126 (129)
.++.+.|++|+..+-.+....-. .....++....+....+.+- .+.+|++. .+|..+. +...+.+++++
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~gl~---~~~~~~~~~~~~~~~~~~~p~~~~vP~l~--~~~~~l~-----eS~aI~~yL~~ 72 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKGVP---YEYVEEDLGNKSELLLASNPVHKKIPVLL--HNGKPIC-----ESLIIVEYIDE 72 (74)
T ss_pred EEECCCCchHHHHHHHHHHcCCC---CEEEEeCcccCCHHHHHhCCCCCCCCEEE--ECCEEee-----hHHHHHHHHHh
Confidence 45678899999888777664322 34444554432232334433 13899885 3454322 33445555543
No 334
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=40.72 E-value=1.3e+02 Score=21.21 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=30.4
Q ss_pred CCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCcccccEEEE
Q 032982 52 AWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVL 102 (129)
Q Consensus 52 ~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i 102 (129)
.+||+|+...-.++...- .+.+..+|....++-..+.+-.|.+|++..
T Consensus 71 g~cp~s~rV~i~L~ekgi---~ye~~~vdl~~~~~~fl~iNP~GkVPvL~~ 118 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHL---PYDMKLVDLTNKPEWFLKISPEGKVPVVKL 118 (265)
T ss_pred CCCcHHHHHHHHHHHcCC---CCEEEEeCcCcCCHHHHhhCCCCCCCEEEE
Confidence 359999988877765432 256666776654443344555558999864
No 335
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=39.74 E-value=1.3e+02 Score=20.90 Aligned_cols=51 Identities=10% Similarity=0.014 Sum_probs=33.5
Q ss_pred CCChhHhhhhHHHHHHHHHcCC--cEEEEEECCCChhHHhhcCCcccccEEEEEeCCeEE
Q 032982 52 AWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEI 109 (129)
Q Consensus 52 ~~c~~C~~~~~~l~~~~~~~~~--v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~~~ 109 (129)
..||+|+...-.+.. .+ +.+..+|....++-..+.+-.|.+|+++ .+|..+
T Consensus 17 ~~cp~~~rv~i~L~e-----kgi~~e~~~vd~~~~~~~fl~inP~g~vPvL~--~~g~~l 69 (236)
T TIGR00862 17 GNCPFSQRLFMILWL-----KGVVFNVTTVDLKRKPEDLQNLAPGTHPPFLT--YNTEVK 69 (236)
T ss_pred CCCHhHHHHHHHHHH-----cCCCcEEEEECCCCCCHHHHHHCcCCCCCEEE--ECCEEe
Confidence 579999988877765 23 6777788776434344444444899885 356543
No 336
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=39.45 E-value=62 Score=20.77 Aligned_cols=42 Identities=12% Similarity=0.084 Sum_probs=23.9
Q ss_pred hcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcC------CcEEEEEEC
Q 032982 39 KQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYT------DVQFIKIDV 81 (129)
Q Consensus 39 ~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~------~v~~~~v~~ 81 (129)
....+|-+|... -++..|+.+...+.++.++.. .+.++.+|-
T Consensus 59 i~~~kP~vI~v~-g~~~~s~~l~~~v~~~v~~~~~~~~~~~i~V~~v~~ 106 (150)
T PF14639_consen 59 IEKHKPDVIAVG-GNSRESRKLYDDVRDIVEELDEDEQMPPIPVVIVDD 106 (150)
T ss_dssp HHHH--SEEEE---SSTHHHHHHHHHHHHHHHTTB-TTS-B--EEE---
T ss_pred HHHcCCeEEEEc-CCChhHHHHHHHHHHHHHHhhhcccCCCceEEEECc
Confidence 334555566564 489999999999988877764 256555553
No 337
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=39.18 E-value=85 Score=19.27 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=15.9
Q ss_pred ecCCCceEEeechhHHHHHHHH
Q 032982 16 HAKTPLVMELQSKHQWRSQYEA 37 (129)
Q Consensus 16 ~~~~~~~~~i~~~~~~~~~~~~ 37 (129)
.+....++.++..+.++..+..
T Consensus 16 ~~~~~~V~~LD~~~~le~~ls~ 37 (114)
T PF07511_consen 16 APAGVRVYELDAPERLEAELSA 37 (114)
T ss_pred CCCCceEEEcCcHHHHHHHHhc
Confidence 4556688888888887776643
No 338
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=38.93 E-value=1.7e+02 Score=21.99 Aligned_cols=98 Identities=17% Similarity=0.165 Sum_probs=58.6
Q ss_pred CceEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC-cEEEEEECCCChhHHhhcCCccccc
Q 032982 20 PLVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLP 98 (129)
Q Consensus 20 ~~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~~~~~~~~~~v~~~~P 98 (129)
.++..|++..+++. +... .+.+.+|=|+.+..+. ....++..+..+.. +.|+.+- ++.++++++++ .-
T Consensus 146 dPVeiIn~~~e~~~-Fe~i--ed~~klIGyFk~~~s~---~yk~FeeAAe~F~p~IkFfAtf---d~~vAk~L~lK--~n 214 (383)
T PF01216_consen 146 DPVEIINNKHELKA-FERI--EDDIKLIGYFKSEDSE---HYKEFEEAAEHFQPYIKFFATF---DKKVAKKLGLK--LN 214 (383)
T ss_dssp SSEEEE-SHHHHHH-HHH----SS-EEEEE-SSTTSH---HHHHHHHHHHHCTTTSEEEEE----SHHHHHHHT-S--TT
T ss_pred cchhhhcChhhhhh-hhhc--ccceeEEEEeCCCCcH---HHHHHHHHHHhhcCceeEEEEe---cchhhhhcCcc--cc
Confidence 45777877666654 3332 4567777776664332 36677888888844 9998765 67889999987 44
Q ss_pred EEEEEe--CCeEEEEEeCC-CHHHHHHHHHhhh
Q 032982 99 TFVLVK--RGKEIDRVVGA-KKDELQMKTEKRR 128 (129)
Q Consensus 99 t~~i~~--~G~~~~~~~g~-~~~~l~~~i~~~~ 128 (129)
.+-+|+ -..++.--..+ +.+++.+||+++.
T Consensus 215 ev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~ 247 (383)
T PF01216_consen 215 EVDFYEPFMDEPITIPGKPYTEEELVEFIEEHK 247 (383)
T ss_dssp -EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-
T ss_pred ceeeeccccCCCccCCCCCCCHHHHHHHHHHhc
Confidence 566664 23444433334 8999999999874
No 339
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=38.64 E-value=76 Score=18.02 Aligned_cols=29 Identities=28% Similarity=0.352 Sum_probs=20.6
Q ss_pred ccEEEEEeCCeEEEEEeCC-CHHHHHHHHHhh
Q 032982 97 LPTFVLVKRGKEIDRVVGA-KKDELQMKTEKR 127 (129)
Q Consensus 97 ~Pt~~i~~~G~~~~~~~g~-~~~~l~~~i~~~ 127 (129)
..++.+|..|+++-. |. +.+++.+.+++.
T Consensus 49 ~~t~~IF~sGki~it--Gaks~~~~~~a~~~i 78 (86)
T PF00352_consen 49 KATVLIFSSGKIVIT--GAKSEEEAKKAIEKI 78 (86)
T ss_dssp TEEEEEETTSEEEEE--EESSHHHHHHHHHHH
T ss_pred cEEEEEEcCCEEEEE--ecCCHHHHHHHHHHH
Confidence 558899999998554 55 777776666554
No 340
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=38.14 E-value=25 Score=24.05 Aligned_cols=29 Identities=17% Similarity=0.182 Sum_probs=21.6
Q ss_pred CCCChhHHhhcCCcccccEEEEE-eCCeEEE
Q 032982 81 VDWLPEAAKAFDLIDVLPTFVLV-KRGKEID 110 (129)
Q Consensus 81 ~~~~~~~~~~~~v~~~~Pt~~i~-~~G~~~~ 110 (129)
.|....+.++|+|+ .+|.++-- .+|+.+.
T Consensus 169 fdQ~G~Lt~rF~I~-~VPAvV~~~q~G~~l~ 198 (209)
T PRK13738 169 FDQNGVLCQRFGID-QVPARVSAVPGGRFLK 198 (209)
T ss_pred EcCcchHHHhcCCe-eeceEEEEcCCCCEEE
Confidence 45566789999999 99998742 6776543
No 341
>PRK13669 hypothetical protein; Provisional
Probab=37.82 E-value=80 Score=18.01 Aligned_cols=53 Identities=8% Similarity=0.012 Sum_probs=34.2
Q ss_pred HHHHHHHcCCcEEEEEECCCChhHHhhcCCcccccEEEEEeCCeEEEEEeCCCHHHHHHHHHhhh
Q 032982 64 VKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRR 128 (129)
Q Consensus 64 l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~~~~~l~~~i~~~~ 128 (129)
++++ +++|++.++..+.-.+-..+ . ..|.. +-||+.+. +.++++|.+.|.+++
T Consensus 20 ~~~L-e~dP~~dVie~gCls~CG~C-----~-~~~FA--lVng~~V~---a~t~eeL~~kI~~~i 72 (78)
T PRK13669 20 FEKL-EKDPNLDVLEYGCLGYCGIC-----S-EGLFA--LVNGEVVE---GETPEELVENIYAHL 72 (78)
T ss_pred HHHH-HhCCCceEEEcchhhhCcCc-----c-cCceE--EECCeEee---cCCHHHHHHHHHHHH
Confidence 3444 56788888888765554433 1 34433 46887655 668999988887654
No 342
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=37.22 E-value=1.6e+02 Score=21.20 Aligned_cols=95 Identities=16% Similarity=0.075 Sum_probs=49.8
Q ss_pred echhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCCh----hHHhhcCCcccccEEE
Q 032982 26 QSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLP----EAAKAFDLIDVLPTFV 101 (129)
Q Consensus 26 ~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~----~~~~~~~v~~~~Pt~~ 101 (129)
.+.+++...+......- +-+ .++.+.|..-..-.....++++..+-+.++.-.-+.|. +++++.+ .|++.
T Consensus 167 ~~~~~~~~iv~~l~~~~-~~~-~v~~TIC~aT~~RQ~a~~~La~~vD~miVVGg~~SsNT~rL~eia~~~~----~~t~~ 240 (281)
T PRK12360 167 IIPELWEDILNVIKLKS-KEL-VFFNTICSATKKRQESAKELSKEVDVMIVIGGKHSSNTQKLVKICEKNC----PNTFH 240 (281)
T ss_pred CcHHHHHHHHHHHHHhC-ccc-ccCCCcchhhhhHHHHHHHHHHhCCEEEEecCCCCccHHHHHHHHHHHC----CCEEE
Confidence 34556666555443222 222 34688898888777788888766422222222222222 3444443 34554
Q ss_pred EE----------eCCeEEEEEeCC-CHHHHHHHHHh
Q 032982 102 LV----------KRGKEIDRVVGA-KKDELQMKTEK 126 (129)
Q Consensus 102 i~----------~~G~~~~~~~g~-~~~~l~~~i~~ 126 (129)
+- .+-+.+.--.|. +++.+.+-+.+
T Consensus 241 Ie~~~el~~~~~~~~~~VGitaGASTP~~li~eV~~ 276 (281)
T PRK12360 241 IETADELDLEMLKDYKIIGITAGASTPDWIIEEVIK 276 (281)
T ss_pred ECChHHCCHHHhCCCCEEEEEccCCCCHHHHHHHHH
Confidence 42 333456666777 67766554433
No 343
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=37.15 E-value=59 Score=26.65 Aligned_cols=32 Identities=22% Similarity=0.428 Sum_probs=23.3
Q ss_pred CChhHhhh---------hHHHHHHHHHcCCcEEEEEECCCC
Q 032982 53 WCGPCKFI---------EPYVKDFAAMYTDVQFIKIDVDWL 84 (129)
Q Consensus 53 ~c~~C~~~---------~~~l~~~~~~~~~v~~~~v~~~~~ 84 (129)
.||.|... ...-+++.+.||+..++++|.|..
T Consensus 477 ~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt 517 (730)
T COG1198 477 SCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTT 517 (730)
T ss_pred CCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEccccc
Confidence 35666554 344477888899999999998854
No 344
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=36.37 E-value=76 Score=20.32 Aligned_cols=43 Identities=7% Similarity=0.088 Sum_probs=32.6
Q ss_pred CCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC--cEEEEEECCCC
Q 032982 42 DRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVDWL 84 (129)
Q Consensus 42 ~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~--v~~~~v~~~~~ 84 (129)
+..-++...+....+=......+..+.+.+|+ +.++.+++++.
T Consensus 58 n~~~vvfVSa~S~~h~~~~~~~i~si~~~~P~~k~ilY~LgL~~~ 102 (142)
T PF07801_consen 58 NSSDVVFVSATSDNHFNESMKSISSIRKFYPNHKIILYDLGLSEE 102 (142)
T ss_pred cCCccEEEEEecchHHHHHHHHHHHHHHHCCCCcEEEEeCCCCHH
Confidence 33445566788888888889999999999997 77777777653
No 345
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=36.17 E-value=75 Score=17.18 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=20.0
Q ss_pred cccEEEEEeCCeEEEEEeCC-CHHHHHHHHHhh
Q 032982 96 VLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKR 127 (129)
Q Consensus 96 ~~Pt~~i~~~G~~~~~~~g~-~~~~l~~~i~~~ 127 (129)
.-|++.++.+|. ..+. +++.+.++++++
T Consensus 49 ~~P~v~i~~~~~----~y~~v~~~~~~~il~~~ 77 (77)
T cd02980 49 LAPVVVVYPDGV----WYGRVTPEDVEEIVEEL 77 (77)
T ss_pred CCCEEEEeCCCe----EEccCCHHHHHHHHHhC
Confidence 678888887553 3344 889998888764
No 346
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=35.72 E-value=75 Score=25.97 Aligned_cols=75 Identities=15% Similarity=0.172 Sum_probs=44.5
Q ss_pred CChhHhhhhHHHHHH-------HHHcCCcEEEEEECCCC-h-hH-HhhcCCccccc-EEEEEeCCeEEEEEeCC--CHHH
Q 032982 53 WCGPCKFIEPYVKDF-------AAMYTDVQFIKIDVDWL-P-EA-AKAFDLIDVLP-TFVLVKRGKEIDRVVGA--KKDE 119 (129)
Q Consensus 53 ~c~~C~~~~~~l~~~-------~~~~~~v~~~~v~~~~~-~-~~-~~~~~v~~~~P-t~~i~~~G~~~~~~~g~--~~~~ 119 (129)
.||.|-+..-.|+++ .+.++++++..+-+-=| | +. -..||+-|+-| -+=+|.+.+.+.+..-- -.++
T Consensus 636 sCPgCGRT~~dlq~~~~~I~~~~~hl~GvkiavMGCIVNGPGEmadAd~GyVG~gpgKI~LYvgKecV~~nIpeeeAvd~ 715 (733)
T PLN02925 636 SCPSCGRTLFDLQEVSAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKEVVKRGIAMEEATDA 715 (733)
T ss_pred ECCCCCCccccHHHHHHHHHHHhhcCCCceEEEEeeeecCCccccccccceeccCCCeeEEEecceehhcCCCHHHHHHH
Confidence 588887655445444 33466777776654311 1 11 14788886778 46667777776653322 2467
Q ss_pred HHHHHHhh
Q 032982 120 LQMKTEKR 127 (129)
Q Consensus 120 l~~~i~~~ 127 (129)
|.++|+++
T Consensus 716 LIeLIKe~ 723 (733)
T PLN02925 716 LIQLIKDH 723 (733)
T ss_pred HHHHHHHc
Confidence 77777664
No 347
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=35.70 E-value=42 Score=22.84 Aligned_cols=35 Identities=17% Similarity=0.344 Sum_probs=27.9
Q ss_pred eEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEE
Q 032982 44 LVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKI 79 (129)
Q Consensus 44 ~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v 79 (129)
..+.+++.|-|+.|--..|.++++...- ++.|.-.
T Consensus 2 ~~lhYifDPmCgWCyGa~Pll~~l~~~~-gl~~~L~ 36 (212)
T COG3531 2 VTLHYIFDPMCGWCYGAAPLLEALSAQP-GLEVVLH 36 (212)
T ss_pred ceeEEecCcchhhhhCccHHHHHHHhcC-CceEEEe
Confidence 3577889999999999999999998763 6555443
No 348
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=34.27 E-value=59 Score=20.80 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=14.1
Q ss_pred ChhHHhhcCCcccccEEE
Q 032982 84 LPEAAKAFDLIDVLPTFV 101 (129)
Q Consensus 84 ~~~~~~~~~v~~~~Pt~~ 101 (129)
..++++++++. .+|.+|
T Consensus 120 gddLA~rL~l~-HYPvLI 136 (142)
T PF11072_consen 120 GDDLARRLGLS-HYPVLI 136 (142)
T ss_pred HHHHHHHhCCC-cccEEe
Confidence 34789999999 999875
No 349
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=34.05 E-value=86 Score=17.27 Aligned_cols=67 Identities=10% Similarity=0.056 Sum_probs=35.2
Q ss_pred cCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCC--cccccEEEEEeCCeEEEEEeCCCHHHHHHHHHh
Q 032982 51 AAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDL--IDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEK 126 (129)
Q Consensus 51 ~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v--~~~~Pt~~i~~~G~~~~~~~g~~~~~l~~~i~~ 126 (129)
.+||++|...+-.+....-. .....++..+.......+.+ .+.+|+++. .+|..+. +...+.+++++
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i~---~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~-~~~~~l~-----eS~aI~~yL~~ 81 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGLE---YKTVPVEFPDIPPILGELTSGGFYTVPVIVD-GSGEVIG-----DSFAIAEYLEE 81 (84)
T ss_pred CCcCChhHHHHHHHHhCCCC---CeEEEecCCCcccccccccCCCCceeCeEEE-CCCCEEe-----CHHHHHHHHHH
Confidence 46899998887777663322 44445554433222222222 237888743 3254432 44456666654
No 350
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=33.48 E-value=57 Score=19.73 Aligned_cols=37 Identities=11% Similarity=0.262 Sum_probs=24.4
Q ss_pred hHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCcccccEEE
Q 032982 61 EPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFV 101 (129)
Q Consensus 61 ~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~~Pt~~ 101 (129)
...+.++.+.-+++.+.-++ ..++++++++. .+|.++
T Consensus 62 ~~~l~~Lr~lapgl~l~P~s---gddLa~rL~l~-hYPvLi 98 (105)
T TIGR03765 62 AAALQRLRALAPGLPLLPVS---GDDLAERLGLR-HYPVLI 98 (105)
T ss_pred HHHHHHHHHHcCCCcccCCC---HHHHHHHhCCC-cccEEE
Confidence 34455555555555555554 34789999999 999765
No 351
>PRK15113 glutathione S-transferase; Provisional
Probab=32.49 E-value=1.3e+02 Score=19.91 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=32.4
Q ss_pred EEEEEcC--CChhHhhhhHHHHHHHHHcCCcEEEEEECCCC----hhHHhhcCCcccccEEEEEeCCeE
Q 032982 46 VIYYTAA--WCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL----PEAAKAFDLIDVLPTFVLVKRGKE 108 (129)
Q Consensus 46 lv~f~~~--~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~----~~~~~~~~v~~~~Pt~~i~~~G~~ 108 (129)
+..++.+ .|++|+...-.+....- .+.+..+|..+. +++ .+.+-.|.+|+++ .+|..
T Consensus 6 ~~Ly~~~~~~s~~~~rv~~~l~e~gi---~~e~~~v~~~~~~~~~~~~-~~~nP~g~VP~L~--~~~~~ 68 (214)
T PRK15113 6 ITLYSDAHFFSPYVMSAFVALQEKGL---PFELKTVDLDAGEHLQPTY-QGYSLTRRVPTLQ--HDDFE 68 (214)
T ss_pred EEEEeCCCCCCchHHHHHHHHHHcCC---CCeEEEeCCCCccccCHHH-HhcCCCCCCCEEE--ECCEE
Confidence 4445544 59999776666655322 256666666432 333 3444445899986 34543
No 352
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=32.28 E-value=1.7e+02 Score=21.21 Aligned_cols=77 Identities=16% Similarity=0.195 Sum_probs=46.5
Q ss_pred eechhHHHHHHHHHhcCCCeEEEE---EEcCCChhHhhhhHHHHHHHHHcCC-cEEEEEECCCChhHHhhcCCcccccEE
Q 032982 25 LQSKHQWRSQYEASKQSDRLVVIY---YTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTF 100 (129)
Q Consensus 25 i~~~~~~~~~~~~~~~~~k~~lv~---f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~~~~~~~~~~v~~~~Pt~ 100 (129)
++..++=+--+..+...+.+++++ |.|-+--.=..+-..+.++++++.. +.|+.-|+++.-.++.+ +
T Consensus 136 LSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadr---------i 206 (309)
T COG1125 136 LSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADR---------I 206 (309)
T ss_pred cCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhce---------E
Confidence 333333333344445567777775 4333333334466677888888876 99999999986555543 3
Q ss_pred EEEeCCeEEE
Q 032982 101 VLVKRGKEID 110 (129)
Q Consensus 101 ~i~~~G~~~~ 110 (129)
.++++|+++.
T Consensus 207 ~vm~~G~i~Q 216 (309)
T COG1125 207 AVMDAGEIVQ 216 (309)
T ss_pred EEecCCeEEE
Confidence 4557776655
No 353
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=32.18 E-value=1.8e+02 Score=20.30 Aligned_cols=50 Identities=16% Similarity=0.188 Sum_probs=34.3
Q ss_pred CChhHhhhhHHHHHHHHHcCC-cEEEEEECCCChhHHhhcCCcccccEEEEEeCCeEEEE
Q 032982 53 WCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDR 111 (129)
Q Consensus 53 ~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~~~~~ 111 (129)
+-.+|..+...++++++++.+ +.++--|+. ++..|.- .++.+++|+++..
T Consensus 167 DmkHsv~iMk~Lrrla~el~KtiviVlHDIN----fAS~YsD-----~IVAlK~G~vv~~ 217 (252)
T COG4604 167 DMKHSVQIMKILRRLADELGKTIVVVLHDIN----FASCYSD-----HIVALKNGKVVKQ 217 (252)
T ss_pred chHHHHHHHHHHHHHHHHhCCeEEEEEeccc----HHHhhhh-----heeeecCCEEEec
Confidence 457999999999999999987 555544543 2333332 2556788887664
No 354
>PF04940 BLUF: Sensors of blue-light using FAD; InterPro: IPR007024 An FAD-binding domain, BLUF, exemplified by the N terminus of the AppA protein, (Q53119 from SWISSPROT), from Rhodobacter sphaeroides, is present in various proteins, primarily from Bacteria. The BLUF domain is involved in sensing blue-light (and possibly redox) using FAD and is similar to the flavin-binding PAS domains and cryptochromes. The predicted secondary structure reveals that the BLUF domain is a novel FAD-binding fold [].; PDB: 2IYG_A 2IYI_B 1X0P_A 2HFN_G 3MZI_A 2HFO_E 3GFZ_A 3GG1_B 2KB2_A 3GFY_A ....
Probab=31.88 E-value=1.1e+02 Score=17.79 Aligned_cols=31 Identities=16% Similarity=0.263 Sum_probs=22.4
Q ss_pred cccEEEEEeCCeEEEEEeCCCHHHHHHHHHhh
Q 032982 96 VLPTFVLVKRGKEIDRVVGAKKDELQMKTEKR 127 (129)
Q Consensus 96 ~~Pt~~i~~~G~~~~~~~g~~~~~l~~~i~~~ 127 (129)
++--++++.+|.....++| +++.+..++++.
T Consensus 34 ~iTG~Ll~~~~~F~Q~LEG-~~~~v~~l~~rI 64 (93)
T PF04940_consen 34 GITGFLLYDGGHFFQVLEG-PEEAVDALFERI 64 (93)
T ss_dssp TEEEEEEEETTEEEEEEEE-EHHHHHHHHHHH
T ss_pred CCEEEEEEeCCEEEEEEEC-CHHHHHHHHHHH
Confidence 3445789999999999999 455566655554
No 355
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=31.80 E-value=1.1e+02 Score=20.34 Aligned_cols=28 Identities=7% Similarity=-0.041 Sum_probs=21.1
Q ss_pred EeechhHHHHHHHHHhcCCCeEEEEEEc
Q 032982 24 ELQSKHQWRSQYEASKQSDRLVVIYYTA 51 (129)
Q Consensus 24 ~i~~~~~~~~~~~~~~~~~k~~lv~f~~ 51 (129)
.+.+.+++.+.++++...+++.+|.+..
T Consensus 156 ~v~~~~el~~al~~al~~~gp~vIev~~ 183 (193)
T cd03375 156 FSGDIKQLKEIIKKAIQHKGFSFVEVLS 183 (193)
T ss_pred ecCCHHHHHHHHHHHHhcCCCEEEEEEC
Confidence 4677788888887777778888888863
No 356
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=31.59 E-value=87 Score=16.59 Aligned_cols=45 Identities=16% Similarity=0.207 Sum_probs=26.3
Q ss_pred CCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCcccccEEEEEeCCeE
Q 032982 52 AWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKE 108 (129)
Q Consensus 52 ~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~~ 108 (129)
++|++|+...-.+.. .++.+-.++++... .+-.+.+|++.. +|..
T Consensus 14 s~sp~~~~v~~~L~~-----~~i~~~~~~~~~~~-----~~p~g~vP~l~~--~g~~ 58 (72)
T cd03054 14 SLSPECLKVETYLRM-----AGIPYEVVFSSNPW-----RSPTGKLPFLEL--NGEK 58 (72)
T ss_pred CCCHHHHHHHHHHHh-----CCCceEEEecCCcc-----cCCCcccCEEEE--CCEE
Confidence 589999988887766 35444444444211 122237898753 4544
No 357
>PHA02513 V1 structural protein V1; Reviewed
Probab=31.21 E-value=25 Score=21.51 Aligned_cols=26 Identities=12% Similarity=0.141 Sum_probs=23.1
Q ss_pred EEEcCCChhHhhhhHHHHHHHHHcCC
Q 032982 48 YYTAAWCGPCKFIEPYVKDFAAMYTD 73 (129)
Q Consensus 48 ~f~~~~c~~C~~~~~~l~~~~~~~~~ 73 (129)
.||..|.+.-....+.+-++++..|+
T Consensus 33 if~qtwdgnii~sa~~fveva~~npk 58 (135)
T PHA02513 33 IFYQTWDGNIISSARRFVEVAKANPK 58 (135)
T ss_pred HHHHhcCchHHHHHHHHHHHHhcCCc
Confidence 48999999999999999999998876
No 358
>PRK06683 hypothetical protein; Provisional
Probab=30.99 E-value=1.1e+02 Score=17.44 Aligned_cols=51 Identities=8% Similarity=0.025 Sum_probs=34.0
Q ss_pred HhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCc
Q 032982 38 SKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLI 94 (129)
Q Consensus 38 ~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~ 94 (129)
+..+++..+| |-+.+|+.- ....+..+.+.+ ++.++.++ ...+|.+..|+.
T Consensus 22 aik~gkaklV-iiA~Da~~~--~~~~i~~~~~~~-~Vpv~~~~--t~~eLG~A~G~~ 72 (82)
T PRK06683 22 AIKNGIVKEV-VIAEDADMR--LTHVIIRTALQH-NIPITKVE--SVRKLGKVAGIQ 72 (82)
T ss_pred HHHcCCeeEE-EEECCCCHH--HHHHHHHHHHhc-CCCEEEEC--CHHHHHHHhCCc
Confidence 3445666666 458888764 455556666654 67777777 446888888887
No 359
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=30.92 E-value=1.2e+02 Score=18.03 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=15.5
Q ss_pred EEEEEcCCChhHhhh-hHHHHH
Q 032982 46 VIYYTAAWCGPCKFI-EPYVKD 66 (129)
Q Consensus 46 lv~f~~~~c~~C~~~-~~~l~~ 66 (129)
|-.||-+-||.|+.+ ...|..
T Consensus 3 v~vyyESlCPd~~~fi~~~L~p 24 (108)
T PF03227_consen 3 VEVYYESLCPDCRRFITNQLFP 24 (108)
T ss_pred EEEEEEecCHhHHHHHHHHHHH
Confidence 456889999999885 445554
No 360
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=30.91 E-value=1.5e+02 Score=19.14 Aligned_cols=40 Identities=15% Similarity=0.399 Sum_probs=32.1
Q ss_pred CCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC--cEEEEEEC
Q 032982 42 DRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDV 81 (129)
Q Consensus 42 ~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~--v~~~~v~~ 81 (129)
++-+.+.++++.++.|.-+...++.+++.+.+ +.+-.++.
T Consensus 127 ~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~ 168 (171)
T PF07700_consen 127 DNELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVEC 168 (171)
T ss_dssp TTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred CCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEecc
Confidence 55677888899999999999999999999876 55555443
No 361
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=30.73 E-value=46 Score=17.93 Aligned_cols=14 Identities=43% Similarity=0.555 Sum_probs=11.3
Q ss_pred ccEEEEEeCCeEEE
Q 032982 97 LPTFVLVKRGKEID 110 (129)
Q Consensus 97 ~Pt~~i~~~G~~~~ 110 (129)
.|++.++++|+.+.
T Consensus 12 ~P~v~W~kdg~~l~ 25 (67)
T cd05863 12 PPEFQWYKDGKLIS 25 (67)
T ss_pred CCEEEEEECCEECc
Confidence 45889999998775
No 362
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.51 E-value=53 Score=25.53 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=17.8
Q ss_pred hHHHHHHHHHcCCcEEEEEECCC
Q 032982 61 EPYVKDFAAMYTDVQFIKIDVDW 83 (129)
Q Consensus 61 ~~~l~~~~~~~~~v~~~~v~~~~ 83 (129)
....+.+.+.+|++.+..+|.|.
T Consensus 272 e~~~e~l~~~fp~~~v~~~d~d~ 294 (505)
T TIGR00595 272 EQVEEELAKLFPGARIARIDSDT 294 (505)
T ss_pred HHHHHHHHhhCCCCcEEEEeccc
Confidence 44557788888998999988774
No 363
>PLN02378 glutathione S-transferase DHAR1
Probab=30.42 E-value=1.7e+02 Score=19.51 Aligned_cols=48 Identities=8% Similarity=-0.013 Sum_probs=29.2
Q ss_pred cCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCcccccEEE
Q 032982 51 AAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFV 101 (129)
Q Consensus 51 ~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~~Pt~~ 101 (129)
...||+|+...-.++...- .+.+..+|....+.-..+.+-.|.+|++.
T Consensus 17 ~~~~p~~~rv~~~L~e~gl---~~e~~~v~~~~~~~~~l~inP~G~VPvL~ 64 (213)
T PLN02378 17 LGDCPFSQRALLTLEEKSL---TYKIHLINLSDKPQWFLDISPQGKVPVLK 64 (213)
T ss_pred CCCCcchHHHHHHHHHcCC---CCeEEEeCcccCCHHHHHhCCCCCCCEEE
Confidence 3459999988776655322 25666666654433334444455899874
No 364
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=30.29 E-value=1.3e+02 Score=18.86 Aligned_cols=31 Identities=10% Similarity=-0.009 Sum_probs=24.2
Q ss_pred CCceEEeech--hHHHHHHHHHhcCCCeEEEEE
Q 032982 19 TPLVMELQSK--HQWRSQYEASKQSDRLVVIYY 49 (129)
Q Consensus 19 ~~~~~~i~~~--~~~~~~~~~~~~~~k~~lv~f 49 (129)
......+++. +++++.++++...+++.+|..
T Consensus 121 G~~~~~v~~~~~~el~~al~~a~~~~gp~vIeV 153 (153)
T PF02775_consen 121 GIKGARVTTPDPEELEEALREALESGGPAVIEV 153 (153)
T ss_dssp TSEEEEESCHSHHHHHHHHHHHHHSSSEEEEEE
T ss_pred CCcEEEEccCCHHHHHHHHHHHHhCCCcEEEEc
Confidence 3445566777 999999998888899998863
No 365
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=29.90 E-value=39 Score=18.99 Aligned_cols=19 Identities=21% Similarity=0.350 Sum_probs=13.6
Q ss_pred cCCcccc--cEEEEEeCCeEEE
Q 032982 91 FDLIDVL--PTFVLVKRGKEID 110 (129)
Q Consensus 91 ~~v~~~~--Pt~~i~~~G~~~~ 110 (129)
|.|. +. |++-++++|+++.
T Consensus 5 ~~v~-G~P~Pti~W~kng~~l~ 25 (79)
T cd05855 5 FTVK-GNPKPTLQWFHEGAILN 25 (79)
T ss_pred EEEe-EeCCCceEEEECCEECC
Confidence 3445 44 5899999998764
No 366
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=29.84 E-value=89 Score=24.91 Aligned_cols=54 Identities=9% Similarity=-0.063 Sum_probs=33.9
Q ss_pred CcEEEEEECCCChhHHhhcCCcccccEEEEEeCCeEEEEEeCC-CHHHHHHHHHhhh
Q 032982 73 DVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEKRR 128 (129)
Q Consensus 73 ~v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~-~~~~l~~~i~~~~ 128 (129)
++.+..+-.+++..+.+ +++. ..|..+++++|..-...... +.+...+.|++++
T Consensus 215 ~v~vr~~~d~q~~~~~~-l~~~-~~~~~llfrnG~~q~l~~~~~s~~~y~~~I~~~l 269 (606)
T KOG1731|consen 215 QVGVRARLDTQNFPLFG-LKPD-NFPLALLFRNGEQQPLWPSSSSRSAYVKKIDDLL 269 (606)
T ss_pred CcceEEEecchhccccc-cCCC-CchhhhhhcCCcccccccccccHHHHHHHHHHHh
Confidence 35555444444545555 8888 99999999999875543333 5555555555543
No 367
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=28.94 E-value=1.7e+02 Score=20.21 Aligned_cols=42 Identities=10% Similarity=0.122 Sum_probs=35.0
Q ss_pred hHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHH
Q 032982 29 HQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAM 70 (129)
Q Consensus 29 ~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~ 70 (129)
+++.+.+..+..++|.++|-|-....|.-....+++.-++.-
T Consensus 3 eql~~TFa~aK~enknaLvtfiTaG~P~v~~T~kilkglq~g 44 (268)
T KOG4175|consen 3 EQLSETFARAKSENKNALVTFITAGDPDVSTTAKILKGLQSG 44 (268)
T ss_pred hHHHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhcC
Confidence 567777877788999999999998888888888888877653
No 368
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=28.94 E-value=2.4e+02 Score=20.86 Aligned_cols=90 Identities=8% Similarity=0.043 Sum_probs=48.8
Q ss_pred hcCCCeEEEEEEcCCChhHhh-hhHHH-HHHHHHcCCcEEEEEECCCChhHHhhcCCc-ccccEEEEEeC--CeEEEEEe
Q 032982 39 KQSDRLVVIYYTAAWCGPCKF-IEPYV-KDFAAMYTDVQFIKIDVDWLPEAAKAFDLI-DVLPTFVLVKR--GKEIDRVV 113 (129)
Q Consensus 39 ~~~~k~~lv~f~~~~c~~C~~-~~~~l-~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~-~~~Pt~~i~~~--G~~~~~~~ 113 (129)
..++.|.+|.|+.++.-.... +...+ +++-.+-..++++..|......--.-+|-. ...|.+.|..= --....+.
T Consensus 224 tEEGlPflILf~~kdD~~s~k~F~~aI~ReL~~e~~~in~l~ADG~~f~hpL~HlgKs~~DLPviaIDsF~Hmylfp~f~ 303 (375)
T KOG0912|consen 224 TEEGLPFLILFRKKDDKESEKIFKNAIARELDDETLAINFLTADGKVFKHPLRHLGKSPDDLPVIAIDSFRHMYLFPDFN 303 (375)
T ss_pred hhcCCceEEEEecCCcccHHHHHHHHHHHHhhhhhhccceeecCcceecchHHHhCCCcccCcEEEeeccceeeecCchh
Confidence 347999999999888766643 33333 223332223888888876433222333321 15666655421 11111222
Q ss_pred CC-CHHHHHHHHHhhh
Q 032982 114 GA-KKDELQMKTEKRR 128 (129)
Q Consensus 114 g~-~~~~l~~~i~~~~ 128 (129)
.. .+.+|.+++..+.
T Consensus 304 di~~pGkLkqFv~DL~ 319 (375)
T KOG0912|consen 304 DINIPGKLKQFVADLH 319 (375)
T ss_pred hhcCccHHHHHHHHHh
Confidence 23 5678888887654
No 369
>smart00140 NGF Nerve growth factor (NGF or beta-NGF). NGF is important for the development and maintenance of the sympathetic and sensory nervous systems.
Probab=28.86 E-value=28 Score=21.09 Aligned_cols=29 Identities=31% Similarity=0.688 Sum_probs=16.2
Q ss_pred CChhHhhhhHHHHHHHHHc---CCcEEEEEEC
Q 032982 53 WCGPCKFIEPYVKDFAAMY---TDVQFIKIDV 81 (129)
Q Consensus 53 ~c~~C~~~~~~l~~~~~~~---~~v~~~~v~~ 81 (129)
|..+|..-......|-..- -++.|++||.
T Consensus 70 WnS~C~ttqtfVrALT~~~~~~~~Wr~IrI~t 101 (106)
T smart00140 70 WNSQCKTTQTYVRALTSDANKRVGWRFIRIDT 101 (106)
T ss_pred ccccccccchhhhhhhhccCceeeEEEEEEcc
Confidence 4455555444444444432 2488888875
No 370
>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidat
Probab=28.63 E-value=1.1e+02 Score=17.00 Aligned_cols=27 Identities=7% Similarity=0.116 Sum_probs=18.0
Q ss_pred cccEEEEEeCCeEEEEEeCCCHHHHHHHHHhh
Q 032982 96 VLPTFVLVKRGKEIDRVVGAKKDELQMKTEKR 127 (129)
Q Consensus 96 ~~Pt~~i~~~G~~~~~~~g~~~~~l~~~i~~~ 127 (129)
.-|.+++ +|+. +.+.+++.+.++++++
T Consensus 54 ~gP~~~v--~~~~---~~~~~~e~i~~il~~~ 80 (80)
T cd03081 54 CSPAAMI--DGEV---HGRVDPEKFDALLAEL 80 (80)
T ss_pred CCCEEEE--CCEE---ECCCCHHHHHHHHHcC
Confidence 5687775 5642 2244899998888753
No 371
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=28.46 E-value=90 Score=20.73 Aligned_cols=57 Identities=9% Similarity=-0.013 Sum_probs=31.3
Q ss_pred CCCceEEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEE
Q 032982 18 KTPLVMELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIK 78 (129)
Q Consensus 18 ~~~~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~ 78 (129)
...+...++. +++-+++.++ ...|++|+|=...-..--.-+..++.++. ++++.++.
T Consensus 31 S~GNPT~lsG-~elV~lIk~a--~~DPV~VMfDD~G~~g~G~GE~Al~~v~~-h~~IeVLG 87 (180)
T PF14097_consen 31 SAGNPTPLSG-EELVELIKQA--PHDPVLVMFDDKGFIGEGPGEQALEYVAN-HPDIEVLG 87 (180)
T ss_pred cCCCCCcCCH-HHHHHHHHhC--CCCCEEEEEeCCCCCCCCccHHHHHHHHc-CCCceEEE
Confidence 4455556655 7777777655 67899999943222222223344444443 46655443
No 372
>PF12617 LdpA_C: Iron-Sulfur binding protein C terminal; InterPro: IPR021039 This entry represents the C-terminal region of the iron-sulphur protein LdpA (Light dependent period), which is found in phototropic organisms. LdpA was originally identified in cyanobacteria where it is involved in light-dependent modulation of the circadian clock. The presence of iron-sulphur clusters on LdpA suggests that it may modulate the circadian clock as an indirect function of light intensity by sensing changes in cellular physiology [].
Probab=28.45 E-value=1.8e+02 Score=19.56 Aligned_cols=57 Identities=12% Similarity=0.222 Sum_probs=26.5
Q ss_pred hhhHHHHHHHHHcCCcEEEEEECCCChhHH----hhcCCcccccEEEEE-eCCeEEEEEeCC
Q 032982 59 FIEPYVKDFAAMYTDVQFIKIDVDWLPEAA----KAFDLIDVLPTFVLV-KRGKEIDRVVGA 115 (129)
Q Consensus 59 ~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~----~~~~v~~~~Pt~~i~-~~G~~~~~~~g~ 115 (129)
.+...+..+..-.+.++++.|.+...+.+. ..|.+.+..|...++ -+|+++....|.
T Consensus 22 ~F~~lw~~l~~~~~~Lk~lAiSc~~~~~li~~L~~~~~~l~~l~~~~iWQ~DGRPMSGDIG~ 83 (183)
T PF12617_consen 22 AFERLWQALAPSVPQLKLLAISCPDGEGLIDYLWQLYEILRPLPCPLIWQLDGRPMSGDIGD 83 (183)
T ss_pred HHHHHHHHHHhhhhhccEEEEECCCCHHHHHHHHHHHHHHhccCCCeeEeeCCcccCCCCCC
Confidence 344444444444444566666555443332 233333234444444 366665544444
No 373
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=27.92 E-value=1.1e+02 Score=16.41 Aligned_cols=55 Identities=18% Similarity=0.141 Sum_probs=31.2
Q ss_pred EEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCC----ChhHHhhcCCcccccEEEEEeCCeE
Q 032982 48 YYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW----LPEAAKAFDLIDVLPTFVLVKRGKE 108 (129)
Q Consensus 48 ~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~----~~~~~~~~~v~~~~Pt~~i~~~G~~ 108 (129)
.++.+-++.|+...-.++...-. .....++..+ .+.+.+..... .+|++. .+|..
T Consensus 3 ly~~~~s~~~~~v~~~l~~~g~~---~~~~~v~~~~~~~~~~~~~~~~p~~-~vP~L~--~~~~~ 61 (76)
T cd03050 3 LYYDLMSQPSRAVYIFLKLNKIP---FEECPIDLRKGEQLTPEFKKINPFG-KVPAIV--DGDFT 61 (76)
T ss_pred EeeCCCChhHHHHHHHHHHcCCC---cEEEEecCCCCCcCCHHHHHhCcCC-CCCEEE--ECCEE
Confidence 46677888888776666553322 4445555432 23443433444 899885 35543
No 374
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=27.89 E-value=1.2e+02 Score=17.18 Aligned_cols=56 Identities=13% Similarity=0.132 Sum_probs=34.7
Q ss_pred hHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCcccccEEEEEeCCeEEEEEeCCCHHHHHHHHHhhh
Q 032982 61 EPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDRVVGAKKDELQMKTEKRR 128 (129)
Q Consensus 61 ~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~~~~~l~~~i~~~~ 128 (129)
...++++. +.|++.++..+.-.+-..+ . ..|.. +-||+.+. +.++++|.+.|.+++
T Consensus 17 ~~~~~~Le-~~p~~~Vie~gCl~~Cg~C-----~-~~pFA--lVnG~~V~---A~t~eeL~~kI~~~i 72 (78)
T PF07293_consen 17 DQVYEKLE-KDPDIDVIEYGCLSYCGPC-----A-KKPFA--LVNGEIVA---AETAEELLEKIKEKI 72 (78)
T ss_pred HHHHHHHh-cCCCccEEEcChhhhCcCC-----C-CCccE--EECCEEEe---cCCHHHHHHHHHHHH
Confidence 33455555 3578888877765553333 1 33433 35787655 668999988887654
No 375
>PF11453 DUF2950: Protein of unknown function (DUF2950); InterPro: IPR021556 This is a bacterial family of uncharacterised proteins.
Probab=27.50 E-value=85 Score=22.39 Aligned_cols=31 Identities=13% Similarity=0.244 Sum_probs=25.3
Q ss_pred hhcCCcccccEEEEEeCCeEEEEEeCCCHHHH
Q 032982 89 KAFDLIDVLPTFVLVKRGKEIDRVVGAKKDEL 120 (129)
Q Consensus 89 ~~~~v~~~~Pt~~i~~~G~~~~~~~g~~~~~l 120 (129)
-+||.+ ++=||++-.+|++..+--|.+.++.
T Consensus 225 a~YG~T-GVmtF~Vn~~g~VYqkDLG~~t~~~ 255 (271)
T PF11453_consen 225 AEYGET-GVMTFMVNQDGQVYQKDLGPDTAAK 255 (271)
T ss_pred hhhCCC-ceEEEEECCCCcEEecccCcchHHH
Confidence 478888 9999999999999999888843333
No 376
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=27.05 E-value=1.3e+02 Score=20.75 Aligned_cols=29 Identities=3% Similarity=-0.039 Sum_probs=23.5
Q ss_pred EeechhHHHHHHHHHhcCCCeEEEEEEcC
Q 032982 24 ELQSKHQWRSQYEASKQSDRLVVIYYTAA 52 (129)
Q Consensus 24 ~i~~~~~~~~~~~~~~~~~k~~lv~f~~~ 52 (129)
.+.+.+++.+.+.++...+++.+|.+..+
T Consensus 172 ~v~~~~el~~al~~a~~~~gP~lIev~~~ 200 (235)
T cd03376 172 SVAYPEDLYKKVKKALSIEGPAYIHILSP 200 (235)
T ss_pred cCCCHHHHHHHHHHHHhCCCCEEEEEECC
Confidence 47788888888888877888999988655
No 377
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=26.42 E-value=94 Score=17.77 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=18.3
Q ss_pred HHhhcCCcccccEEEEEeCCeEEE
Q 032982 87 AAKAFDLIDVLPTFVLVKRGKEID 110 (129)
Q Consensus 87 ~~~~~~v~~~~Pt~~i~~~G~~~~ 110 (129)
.++.|++. ..+++++..+|.+++
T Consensus 30 ~~~~l~l~-~~~~lvL~eDGT~Vd 52 (79)
T cd06538 30 VLDALLLD-CISSLVLDEDGTGVD 52 (79)
T ss_pred HHHHcCCC-CccEEEEecCCcEEc
Confidence 45788887 667888889999875
No 378
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=26.29 E-value=1.9e+02 Score=19.36 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=19.7
Q ss_pred cEEEEEeCCeEEEEEeCC-CHHHHHHHHHhh
Q 032982 98 PTFVLVKRGKEIDRVVGA-KKDELQMKTEKR 127 (129)
Q Consensus 98 Pt~~i~~~G~~~~~~~g~-~~~~l~~~i~~~ 127 (129)
++++||+.|+.+-. |. +.+++..-++++
T Consensus 54 ~a~LIF~SGK~VcT--GaKs~ed~~~av~~~ 82 (185)
T COG2101 54 TAALIFRSGKVVCT--GAKSVEDVHRAVKKL 82 (185)
T ss_pred ceEEEEecCcEEEe--ccCcHHHHHHHHHHH
Confidence 37888999998765 65 777666655543
No 379
>PHA02131 hypothetical protein
Probab=25.52 E-value=1.2e+02 Score=16.11 Aligned_cols=27 Identities=11% Similarity=0.267 Sum_probs=19.3
Q ss_pred cccEEEEEeCCeEEEEEeCCCHHHHHH
Q 032982 96 VLPTFVLVKRGKEIDRVVGAKKDELQM 122 (129)
Q Consensus 96 ~~Pt~~i~~~G~~~~~~~g~~~~~l~~ 122 (129)
++-.++.|++|++.+--...+..++.+
T Consensus 28 g~~c~imfk~~~v~dctfk~dtaqfr~ 54 (70)
T PHA02131 28 GISCWIMFKNDQVIDCTFKNDTAQFRS 54 (70)
T ss_pred ceEEEEEEcCCCEEEeeecCcHHHHhh
Confidence 566888999999998765555445443
No 380
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=25.51 E-value=1.5e+02 Score=20.97 Aligned_cols=39 Identities=8% Similarity=0.190 Sum_probs=26.3
Q ss_pred eEEEEEEcCCChhHh-hhhHHHHHHHHHcCCcEEEEEECC
Q 032982 44 LVVIYYTAAWCGPCK-FIEPYVKDFAAMYTDVQFIKIDVD 82 (129)
Q Consensus 44 ~~lv~f~~~~c~~C~-~~~~~l~~~~~~~~~v~~~~v~~~ 82 (129)
.+++.|.+++-.... .+...-+++++.||+..+...-.+
T Consensus 3 IllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS 42 (262)
T PF06180_consen 3 ILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTS 42 (262)
T ss_dssp EEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchH
Confidence 467888888887777 667777888888998887777655
No 381
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=25.25 E-value=3.4e+02 Score=21.92 Aligned_cols=93 Identities=14% Similarity=0.077 Sum_probs=46.5
Q ss_pred echhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCC-h---hHHhhcCCcccccEEE
Q 032982 26 QSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL-P---EAAKAFDLIDVLPTFV 101 (129)
Q Consensus 26 ~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~-~---~~~~~~~v~~~~Pt~~ 101 (129)
.+.+++...+......- +-+ .++.+.|..-..-.....++++..+-+.++.-.-+.| . ++|++. +.|++.
T Consensus 164 ~~~~~~~~~~~~l~~~~-~~~-~~~~tiC~at~~Rq~a~~~la~~~d~~~vvGg~~SsNt~~L~~i~~~~----~~~~~~ 237 (647)
T PRK00087 164 EKQENFEKVLKELKKKG-KEV-KVFNTICNATEVRQEAAEKLAKKVDVMIVVGGKNSSNTTKLYEICKSN----CTNTIH 237 (647)
T ss_pred CcHHHHHHHHHHHHHhC-CCc-ccCCCcchhhhhHHHHHHHHHhhCCEEEEECCCCCccHHHHHHHHHHH----CCCEEE
Confidence 34455555555433222 222 3368888888777777777776532122222111222 1 344443 345555
Q ss_pred E----------EeCCeEEEEEeCC-CHHHHHHHH
Q 032982 102 L----------VKRGKEIDRVVGA-KKDELQMKT 124 (129)
Q Consensus 102 i----------~~~G~~~~~~~g~-~~~~l~~~i 124 (129)
+ +.+-+.+.--.|. +++.+.+-+
T Consensus 238 ie~~~el~~~~~~~~~~vgitagaStP~~~i~~v 271 (647)
T PRK00087 238 IENAGELPEEWFKGVKIIGVTAGASTPDWIIEEV 271 (647)
T ss_pred ECChHHCCHHHhCCCCEEEEEeccCCCHHHHHHH
Confidence 4 2333456666777 666554443
No 382
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=25.13 E-value=1.2e+02 Score=20.44 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=12.9
Q ss_pred chhHHHHHHHHHhcCCCeEEEEEEcCCChh
Q 032982 27 SKHQWRSQYEASKQSDRLVVIYYTAAWCGP 56 (129)
Q Consensus 27 ~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~ 56 (129)
+..++.+.+. ..++|+++.|..-|--.
T Consensus 120 s~~~lr~~l~---~~~~P~LllFGTGwGL~ 146 (185)
T PF09936_consen 120 SYAELRRMLE---EEDRPVLLLFGTGWGLA 146 (185)
T ss_dssp -HHHHHHHHH---H--S-EEEEE--TT---
T ss_pred CHHHHHHHHh---ccCCeEEEEecCCCCCC
Confidence 4456666553 36899999999988644
No 383
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=25.05 E-value=1.4e+02 Score=19.35 Aligned_cols=28 Identities=18% Similarity=0.100 Sum_probs=18.3
Q ss_pred eEEeechhHHHHHHHHHhcCCCeEEEEE
Q 032982 22 VMELQSKHQWRSQYEASKQSDRLVVIYY 49 (129)
Q Consensus 22 ~~~i~~~~~~~~~~~~~~~~~k~~lv~f 49 (129)
...+++.++++..++.+...+++.+|..
T Consensus 145 ~~~v~~~~el~~al~~a~~~~~p~lIev 172 (175)
T cd02009 145 YRRVSSLDELEQALESALAQDGPHVIEV 172 (175)
T ss_pred eeeCCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 4555666777777766666666776654
No 384
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=25.01 E-value=1.3e+02 Score=21.30 Aligned_cols=29 Identities=14% Similarity=0.107 Sum_probs=22.9
Q ss_pred HHHHHHcCCcEEEEEECCCChhHHhhcCCc
Q 032982 65 KDFAAMYTDVQFIKIDVDWLPEAAKAFDLI 94 (129)
Q Consensus 65 ~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~ 94 (129)
.++.++. +..+..||.|++..+...+|+.
T Consensus 22 ~~l~~~~-~~~VLvVDaDpd~nL~~~LGve 50 (255)
T COG3640 22 KRLLSKG-GYNVLVVDADPDSNLPEALGVE 50 (255)
T ss_pred HHHHhcC-CceEEEEeCCCCCChHHhcCCC
Confidence 4444432 3899999999999999999998
No 385
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=24.85 E-value=1.4e+02 Score=19.87 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=16.9
Q ss_pred eEEeechhHHHHHHHHHhcCCCeEEEEEE
Q 032982 22 VMELQSKHQWRSQYEASKQSDRLVVIYYT 50 (129)
Q Consensus 22 ~~~i~~~~~~~~~~~~~~~~~k~~lv~f~ 50 (129)
...+.+.++++..+..+...+++++|.+-
T Consensus 154 ~~~v~~~~el~~al~~a~~~~gp~lIeV~ 182 (205)
T cd02003 154 VEKVKTIEELKAALAKAKASDRTTVIVIK 182 (205)
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 44455666666666665555566666553
No 386
>PRK06163 hypothetical protein; Provisional
Probab=24.83 E-value=1.5e+02 Score=19.91 Aligned_cols=30 Identities=3% Similarity=-0.106 Sum_probs=19.3
Q ss_pred EeechhHHHHHHHHHhcCCCeEEEEEEcCC
Q 032982 24 ELQSKHQWRSQYEASKQSDRLVVIYYTAAW 53 (129)
Q Consensus 24 ~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~ 53 (129)
.+++.++++..++.+...+++.+|.+.-+.
T Consensus 145 ~v~~~~el~~al~~a~~~~~p~lIeV~i~~ 174 (202)
T PRK06163 145 WAADEAHFEALVDQALSGPGPSFIAVRIDD 174 (202)
T ss_pred EeCCHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 456667777767666666667777665443
No 387
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=24.83 E-value=1.7e+02 Score=19.08 Aligned_cols=32 Identities=9% Similarity=0.103 Sum_probs=19.7
Q ss_pred ceEEeechhHHHHHHHHHhcCCCeEEEEEEcC
Q 032982 21 LVMELQSKHQWRSQYEASKQSDRLVVIYYTAA 52 (129)
Q Consensus 21 ~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~ 52 (129)
....+++.+++++.+..+...+++++|.+.-+
T Consensus 143 ~~~~v~~~~el~~al~~a~~~~~p~liev~~~ 174 (186)
T cd02015 143 KGLRVEKPEELEAALKEALASDGPVLLDVLVD 174 (186)
T ss_pred ceEEeCCHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 34455666667666666655666777766543
No 388
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=24.71 E-value=1.7e+02 Score=18.16 Aligned_cols=52 Identities=21% Similarity=0.304 Sum_probs=34.2
Q ss_pred CChhHhhhhHHHHHHHHH----cC--C--cEEEEEECCCChhHHhhcCCcccccEEEEEeCCeEEE
Q 032982 53 WCGPCKFIEPYVKDFAAM----YT--D--VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEID 110 (129)
Q Consensus 53 ~c~~C~~~~~~l~~~~~~----~~--~--v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~~~~ 110 (129)
-|..|......+.+..+. +. + +.+-.+.++.. ++++++ . ..|++. -||+.+.
T Consensus 14 tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~-~~~~~~--~-~S~~I~--inG~piE 73 (120)
T PF10865_consen 14 TCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEE-EFARQP--L-ESPTIR--INGRPIE 73 (120)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChH-HHhhcc--c-CCCeee--ECCEehh
Confidence 799999888877666555 33 3 66777777753 666666 3 467654 4666553
No 389
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=24.66 E-value=1e+02 Score=17.73 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=18.1
Q ss_pred HHhhcCCcccccEEEEEeCCeEEE
Q 032982 87 AAKAFDLIDVLPTFVLVKRGKEID 110 (129)
Q Consensus 87 ~~~~~~v~~~~Pt~~i~~~G~~~~ 110 (129)
.++.+++. ..++++++.+|.+++
T Consensus 30 ~~~~L~~~-~~~~lvLeeDGT~Vd 52 (81)
T cd06537 30 ALETLLLS-GVLTLVLEEDGTAVD 52 (81)
T ss_pred HHHHhCCC-CceEEEEecCCCEEc
Confidence 35678887 777888889999875
No 390
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=24.49 E-value=1.2e+02 Score=15.83 Aligned_cols=54 Identities=13% Similarity=0.095 Sum_probs=26.2
Q ss_pred EEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCC----ChhHHhhcCCcccccEEEEEeCCeE
Q 032982 49 YTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW----LPEAAKAFDLIDVLPTFVLVKRGKE 108 (129)
Q Consensus 49 f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~----~~~~~~~~~v~~~~Pt~~i~~~G~~ 108 (129)
++...|+.|...+-.+....- .+....++..+ .+++.+..... .+|++. .+|..
T Consensus 4 ~~~~~~~~~~~~~~~l~~~gi---~~~~~~~~~~~~~~~~~~~~~~~p~~-~vP~l~--~~~~~ 61 (73)
T cd03042 4 YSYFRSSASYRVRIALNLKGL---DYEYVPVNLLKGEQLSPAYRALNPQG-LVPTLV--IDGLV 61 (73)
T ss_pred ecCCCCcchHHHHHHHHHcCC---CCeEEEecCccCCcCChHHHHhCCCC-CCCEEE--ECCEE
Confidence 345556666655444444211 14555565532 23433333444 899875 34543
No 391
>PRK10387 glutaredoxin 2; Provisional
Probab=24.43 E-value=2.1e+02 Score=18.67 Aligned_cols=56 Identities=14% Similarity=0.101 Sum_probs=28.2
Q ss_pred EEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCcccccEEEEEeCCeE
Q 032982 48 YYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKE 108 (129)
Q Consensus 48 ~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~~ 108 (129)
.++.+.||+|...+-.++...-. +....++..+.....+..+.. .+|+++. .+|..
T Consensus 3 Ly~~~~sp~~~kv~~~L~~~gi~---y~~~~~~~~~~~~~~~~~p~~-~VPvL~~-~~g~~ 58 (210)
T PRK10387 3 LYIYDHCPFCVKARMIFGLKNIP---VELIVLANDDEATPIRMIGQK-QVPILQK-DDGSY 58 (210)
T ss_pred EEeCCCCchHHHHHHHHHHcCCC---eEEEEcCCCchhhHHHhcCCc-ccceEEe-cCCeE
Confidence 34577899999877666553221 233333333222111222233 7888753 35544
No 392
>PLN02949 transferase, transferring glycosyl groups
Probab=24.26 E-value=3.2e+02 Score=21.00 Aligned_cols=70 Identities=16% Similarity=0.122 Sum_probs=40.5
Q ss_pred CCCeEEEEEEcCCChhH----hhhhHHHHHHHHHcCC--cEEEEEECCCC-hh----HHhhcCCc-ccccEEEEEeCCeE
Q 032982 41 SDRLVVIYYTAAWCGPC----KFIEPYVKDFAAMYTD--VQFIKIDVDWL-PE----AAKAFDLI-DVLPTFVLVKRGKE 108 (129)
Q Consensus 41 ~~k~~lv~f~~~~c~~C----~~~~~~l~~~~~~~~~--v~~~~v~~~~~-~~----~~~~~~v~-~~~Pt~~i~~~G~~ 108 (129)
..+...|-|..|+|+.. +.+......+++..++ +.++.-|.|.. .+ ..++|++. ...++++..+.|.-
T Consensus 30 ~~~~~~v~f~HP~~~~ggG~ERvl~~a~~~l~~~~~~~~v~iyt~~~d~~~~~~l~~~~~~~~i~~~~~~~~v~l~~~~~ 109 (463)
T PLN02949 30 RSRKRAVGFFHPYTNDGGGGERVLWCAVRAIQEENPDLDCVIYTGDHDASPDSLAARARDRFGVELLSPPKVVHLRKRKW 109 (463)
T ss_pred cCCCcEEEEECCCCCCCCChhhHHHHHHHHHHhhCCCCeEEEEcCCCCCCHHHHHHHHHhhcceecCCCceEEEeccccc
Confidence 34455677889999766 5555566666776664 55565555533 23 33477774 13345554545554
Q ss_pred EE
Q 032982 109 ID 110 (129)
Q Consensus 109 ~~ 110 (129)
+.
T Consensus 110 ~~ 111 (463)
T PLN02949 110 IE 111 (463)
T ss_pred cc
Confidence 44
No 393
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=24.11 E-value=1.7e+02 Score=18.30 Aligned_cols=30 Identities=3% Similarity=0.014 Sum_probs=20.1
Q ss_pred CceEEeechhHHHHHHHHHhcCCCeEEEEE
Q 032982 20 PLVMELQSKHQWRSQYEASKQSDRLVVIYY 49 (129)
Q Consensus 20 ~~~~~i~~~~~~~~~~~~~~~~~k~~lv~f 49 (129)
.....+++.+++.+.++.+...+++.+|..
T Consensus 137 ~~~~~v~~~~~l~~a~~~a~~~~~p~~i~v 166 (168)
T cd00568 137 AKGVRVEDPEDLEAALAEALAAGGPALIEV 166 (168)
T ss_pred CeEEEECCHHHHHHHHHHHHhCCCCEEEEE
Confidence 345566667777777777666677777764
No 394
>PF06289 FlbD: Flagellar protein (FlbD); InterPro: IPR009384 This family consists of several bacterial FlbD flagellar proteins. The exact function of this family is unknown [].
Probab=23.91 E-value=1.3e+02 Score=16.15 Aligned_cols=30 Identities=20% Similarity=0.165 Sum_probs=19.9
Q ss_pred ccc-EEEEEeCCeEEEEEeCCCHHHHHHHHHhh
Q 032982 96 VLP-TFVLVKRGKEIDRVVGAKKDELQMKTEKR 127 (129)
Q Consensus 96 ~~P-t~~i~~~G~~~~~~~g~~~~~l~~~i~~~ 127 (129)
..| |++..-+|+.+--.+ +.+++.+.+.++
T Consensus 24 ~~PDTvItL~~G~k~vV~E--s~~eVi~ki~~y 54 (60)
T PF06289_consen 24 ETPDTVITLTNGKKYVVKE--SVEEVIEKIIEY 54 (60)
T ss_pred EcCCeEEEEeCCCEEEEEC--CHHHHHHHHHHH
Confidence 788 777778997654333 666666666543
No 395
>PF10589 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; InterPro: IPR019575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the F subunit of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. This entry represents the iron-sulphur binding domain of the F subunit.; GO: 0055114 oxidation-reduction process; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=23.65 E-value=44 Score=16.72 Aligned_cols=20 Identities=15% Similarity=0.333 Sum_probs=12.2
Q ss_pred CCChhHhhhhHHHHHHHHHc
Q 032982 52 AWCGPCKFIEPYVKDFAAMY 71 (129)
Q Consensus 52 ~~c~~C~~~~~~l~~~~~~~ 71 (129)
-+|.+|+.-.+.+.++.++.
T Consensus 17 GkC~PCR~Gt~~l~~~l~~i 36 (46)
T PF10589_consen 17 GKCTPCREGTRQLAEILEKI 36 (46)
T ss_dssp S--HHHHCCCCHHHHHHHHH
T ss_pred CCCCCcHhHHHHHHHHHHHH
Confidence 36899988777766655443
No 396
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=23.65 E-value=2.2e+02 Score=18.73 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=18.9
Q ss_pred EEEEEeCCeEEEEEeCC-CHHHHHHHHHhh
Q 032982 99 TFVLVKRGKEIDRVVGA-KKDELQMKTEKR 127 (129)
Q Consensus 99 t~~i~~~G~~~~~~~g~-~~~~l~~~i~~~ 127 (129)
|+++|..|+++- .|. +.+++.+.++++
T Consensus 141 t~lIF~sGkvvi--tGaks~~~~~~a~~~i 168 (174)
T cd00652 141 VLLIFVSGKIVI--TGAKSREDIYEAVEKI 168 (174)
T ss_pred EEEEEcCCEEEE--EecCCHHHHHHHHHHH
Confidence 567788998754 466 777777766654
No 397
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=23.58 E-value=1.7e+02 Score=19.04 Aligned_cols=30 Identities=17% Similarity=0.102 Sum_probs=19.0
Q ss_pred ceEEeechhHHHHHHHHHhcCCCeEEEEEE
Q 032982 21 LVMELQSKHQWRSQYEASKQSDRLVVIYYT 50 (129)
Q Consensus 21 ~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~ 50 (129)
....+.+.+++...++.+...+++.+|..-
T Consensus 139 ~~~~v~~~~el~~al~~a~~~~~p~liev~ 168 (177)
T cd02010 139 KGYRIESADDLLPVLERALAADGVHVIDCP 168 (177)
T ss_pred EEEEECCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 345566667777666666666666666654
No 398
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=23.57 E-value=1.5e+02 Score=16.63 Aligned_cols=34 Identities=12% Similarity=0.262 Sum_probs=27.5
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHcCC---cEEEEE
Q 032982 46 VIYYTAAWCGPCKFIEPYVKDFAAMYTD---VQFIKI 79 (129)
Q Consensus 46 lv~f~~~~c~~C~~~~~~l~~~~~~~~~---v~~~~v 79 (129)
+++|..+.+.-......+.++..+.||+ +.+..+
T Consensus 5 FLhlt~~~~tl~~L~~eI~~~f~kLYP~~~~~~I~~L 41 (73)
T PF10407_consen 5 FLHLTDPNNTLSQLKEEIEERFKKLYPNEPELEILSL 41 (73)
T ss_pred EEEEeCCCCcHHHHHHHHHHHHHHHCCCCCCceEEEe
Confidence 6778899998888888889999999997 454444
No 399
>COG4752 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.32 E-value=1.5e+02 Score=19.35 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHhcCCCeEEEEEEcCCChhHh
Q 032982 28 KHQWRSQYEASKQSDRLVVIYYTAAWCGPCK 58 (129)
Q Consensus 28 ~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~ 58 (129)
.+.+...+. ..+|++++.|..-|--+-.
T Consensus 122 y~~lr~~I~---e~dkp~LilfGTGwGlpde 149 (190)
T COG4752 122 YSWLRNEIQ---ERDKPWLILFGTGWGLPDE 149 (190)
T ss_pred HHHHHHHHh---hcCCcEEEEecCCCCCCHH
Confidence 344444443 3789999999998876643
No 400
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=23.12 E-value=2.3e+02 Score=22.10 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=27.4
Q ss_pred hcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCC
Q 032982 39 KQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDW 83 (129)
Q Consensus 39 ~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~ 83 (129)
..-+||.+|.. ++--|+..+....-+++..+| ++.++.+|+.+
T Consensus 177 k~igKPFvill-Ns~~P~s~et~~L~~eL~ekY-~vpVlpvnc~~ 219 (492)
T PF09547_consen 177 KEIGKPFVILL-NSTKPYSEETQELAEELEEKY-DVPVLPVNCEQ 219 (492)
T ss_pred HHhCCCEEEEE-eCCCCCCHHHHHHHHHHHHHh-CCcEEEeehHH
Confidence 34588887766 444455555555556666677 78888888763
No 401
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=22.89 E-value=1.6e+02 Score=19.88 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=32.2
Q ss_pred CCCeEEEEEE--cCCChhHhhhhHHHHHHHHHcCC--cEEEEEECC
Q 032982 41 SDRLVVIYYT--AAWCGPCKFIEPYVKDFAAMYTD--VQFIKIDVD 82 (129)
Q Consensus 41 ~~k~~lv~f~--~~~c~~C~~~~~~l~~~~~~~~~--v~~~~v~~~ 82 (129)
-+..+.|.|. ++.-|-|-.....+.+++-+|.+ ++.+...+|
T Consensus 30 ~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d 75 (224)
T KOG0854|consen 30 LGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVD 75 (224)
T ss_pred cccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehh
Confidence 3455666787 45789999988888888888864 888887765
No 402
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=22.60 E-value=2.3e+02 Score=18.63 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=19.6
Q ss_pred EEEEEeCCeEEEEEeCC-CHHHHHHHHHhhh
Q 032982 99 TFVLVKRGKEIDRVVGA-KKDELQMKTEKRR 128 (129)
Q Consensus 99 t~~i~~~G~~~~~~~g~-~~~~l~~~i~~~~ 128 (129)
++.+|..|+++- .|. +.+++.+.++.++
T Consensus 141 t~lIF~sGkivi--tGaks~~~~~~a~~~i~ 169 (174)
T cd04517 141 TLSIFSTGSVTV--TGARSMEDVREAVEKIY 169 (174)
T ss_pred EEEEeCCCEEEE--EecCCHHHHHHHHHHHH
Confidence 677778888754 466 7788877776643
No 403
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=22.59 E-value=2e+02 Score=17.68 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=15.2
Q ss_pred cCCCceEEeechhHHHHHHHH
Q 032982 17 AKTPLVMELQSKHQWRSQYEA 37 (129)
Q Consensus 17 ~~~~~~~~i~~~~~~~~~~~~ 37 (129)
.....++.++..+.++..+..
T Consensus 18 ~~~~~Vi~LD~~erle~~ls~ 38 (113)
T TIGR03757 18 TPGTRVIELDAPERLEAQLSA 38 (113)
T ss_pred CCCcEEEEeccHHHHHHHHhc
Confidence 345688888888888876643
No 404
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=22.56 E-value=3.3e+02 Score=20.26 Aligned_cols=60 Identities=12% Similarity=0.084 Sum_probs=37.2
Q ss_pred cCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCcccccEEEEE
Q 032982 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLIDVLPTFVLV 103 (129)
Q Consensus 40 ~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~ 103 (129)
.+.++++| ..-|..+.......+++..+.+++.|+..|+...+.+.+-|... .+=.++-|
T Consensus 25 ~gy~v~~v---DNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~-~fd~V~Hf 84 (343)
T KOG1371|consen 25 RGYGVVIV---DNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEV-KFDAVMHF 84 (343)
T ss_pred CCCcEEEE---ecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhc-CCceEEee
Confidence 34555555 33344443333333444443334999999999999999888877 65555555
No 405
>PLN00062 TATA-box-binding protein; Provisional
Probab=22.54 E-value=2.4e+02 Score=18.76 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=18.8
Q ss_pred EEEEEeCCeEEEEEeCC-CHHHHHHHHHhh
Q 032982 99 TFVLVKRGKEIDRVVGA-KKDELQMKTEKR 127 (129)
Q Consensus 99 t~~i~~~G~~~~~~~g~-~~~~l~~~i~~~ 127 (129)
++++|..|+++- .|. +.+++.+.++.+
T Consensus 140 ~~liF~sGkvvi--tGaks~~~~~~ai~~i 167 (179)
T PLN00062 140 VLLIFVSGKIVI--TGAKVREEIYTAFENI 167 (179)
T ss_pred EEEEeCCCEEEE--EecCCHHHHHHHHHHH
Confidence 567788898754 366 777777766654
No 406
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=22.50 E-value=1.7e+02 Score=18.98 Aligned_cols=31 Identities=6% Similarity=0.034 Sum_probs=17.4
Q ss_pred eEEeechhHHH---HHHHHHhcCCCeEEEEEEcC
Q 032982 22 VMELQSKHQWR---SQYEASKQSDRLVVIYYTAA 52 (129)
Q Consensus 22 ~~~i~~~~~~~---~~~~~~~~~~k~~lv~f~~~ 52 (129)
...+.+.++++ +.++.+...+++.+|....+
T Consensus 144 ~~~v~~~~~l~~~~~al~~a~~~~gp~lI~v~~~ 177 (178)
T cd02008 144 RVVVVDPYDLKAIREELKEALAVPGVSVIIAKRP 177 (178)
T ss_pred EEEecCccCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 34444445555 44555555566777766554
No 407
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=22.48 E-value=3.3e+02 Score=20.16 Aligned_cols=77 Identities=10% Similarity=0.096 Sum_probs=42.4
Q ss_pred cCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC-cEEEEEECCCChhHHhhc-CCcccccEEEEEeCCeEEEEEeCCCH
Q 032982 40 QSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAF-DLIDVLPTFVLVKRGKEIDRVVGAKK 117 (129)
Q Consensus 40 ~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~~~~~~~~~-~v~~~~Pt~~i~~~G~~~~~~~g~~~ 117 (129)
...++..|+|.....| .++++...-+. +.+.+.- +...+++-.+ ..+ ..|.+.+|++..-.-...| +.
T Consensus 151 ~Rhq~ffVf~Gtge~P-------L~d~fidAASe~~~~a~Ff-SaseeVaPe~~~~k-empaV~VFKDetf~i~de~-dd 220 (468)
T KOG4277|consen 151 ARHQPFFVFFGTGEGP-------LFDAFIDAASEKFSVARFF-SASEEVAPEENDAK-EMPAVAVFKDETFEIEDEG-DD 220 (468)
T ss_pred hccCceEEEEeCCCCc-------HHHHHHHHhhhheeeeeee-ccccccCCcccchh-hccceEEEccceeEEEecC-ch
Confidence 4788999988765544 33333333222 2232222 1122223222 345 7899999987743222322 77
Q ss_pred HHHHHHHHh
Q 032982 118 DELQMKTEK 126 (129)
Q Consensus 118 ~~l~~~i~~ 126 (129)
++|.+||.+
T Consensus 221 ~dLseWinR 229 (468)
T KOG4277|consen 221 EDLSEWINR 229 (468)
T ss_pred hHHHHHHhH
Confidence 889999875
No 408
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=22.46 E-value=2.3e+02 Score=21.45 Aligned_cols=56 Identities=13% Similarity=0.194 Sum_probs=34.9
Q ss_pred CCeEEEEEEcCCChhHhh----hhHHHHHHHHHcCC--cEEEEEECCCChh-----HHhhcCCccccc
Q 032982 42 DRLVVIYYTAAWCGPCKF----IEPYVKDFAAMYTD--VQFIKIDVDWLPE-----AAKAFDLIDVLP 98 (129)
Q Consensus 42 ~k~~lv~f~~~~c~~C~~----~~~~l~~~~~~~~~--v~~~~v~~~~~~~-----~~~~~~v~~~~P 98 (129)
.....|-|+.|+|..--- +-..++.+++++++ +.+|.-|.+..++ ..++|++. --|
T Consensus 41 k~~ktvgfFHPYCNAGGGGErVLW~Avr~~q~k~~n~~~viYsGD~n~t~~~IL~k~k~~F~id-lDs 107 (465)
T KOG1387|consen 41 KNVKTVGFFHPYCNAGGGGERVLWKAVRITQRKFPNNVIVIYSGDFNVTPENILNKVKNKFDID-LDS 107 (465)
T ss_pred hhceEEEEecccccCCCCcceehhHHHHHHHHhCCCceEEEEeCCCCCCHHHHHHHHHHhcCce-ecc
Confidence 344556789999976543 44455778889998 4445555554332 34578877 444
No 409
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=22.46 E-value=3.6e+02 Score=20.60 Aligned_cols=56 Identities=21% Similarity=0.203 Sum_probs=35.7
Q ss_pred CcEEEEEECCCChh-------------HHhhcCCcccccEEEEEeC--Ce-EEEEEeCCCHHHHHHHHHhhh
Q 032982 73 DVQFIKIDVDWLPE-------------AAKAFDLIDVLPTFVLVKR--GK-EIDRVVGAKKDELQMKTEKRR 128 (129)
Q Consensus 73 ~v~~~~v~~~~~~~-------------~~~~~~v~~~~Pt~~i~~~--G~-~~~~~~g~~~~~l~~~i~~~~ 128 (129)
++.++.+|-++.|+ +...|.-.+..|-+++..+ |+ ..-+..|.++.++.+.+.+++
T Consensus 376 ~~~~~~~d~~~~p~~~~~~e~~t~~w~~~~a~~~~~~~pdvi~d~g~~g~Ep~i~v~g~~~~~v~~~~~~l~ 447 (448)
T PRK08573 376 GYTVAYIDRREEPEEVKAREGASIPWIIEEAYKQTGRRPDIIYDLGDWGKEPMIRILGRTPVEVVEKLLRLI 447 (448)
T ss_pred CCeEEEEcCCCCchhhhhccccchhHHHHHHHHhcCCCCeEEEECCCCCcCcEEEEECCCHHHHHHHHHHHh
Confidence 47777787766543 2333322128898877754 33 344678888888888877764
No 410
>PRK11752 putative S-transferase; Provisional
Probab=22.28 E-value=2.8e+02 Score=19.32 Aligned_cols=56 Identities=5% Similarity=-0.048 Sum_probs=34.3
Q ss_pred EEEEcCCChhHhhhhHHHHHH-HHHcCC--cEEEEEECCC----ChhHHhhcCCcccccEEEEE
Q 032982 47 IYYTAAWCGPCKFIEPYVKDF-AAMYTD--VQFIKIDVDW----LPEAAKAFDLIDVLPTFVLV 103 (129)
Q Consensus 47 v~f~~~~c~~C~~~~~~l~~~-~~~~~~--v~~~~v~~~~----~~~~~~~~~v~~~~Pt~~i~ 103 (129)
+.+|...++.|+...-.++++ ....++ +.++.+|... .+++.+ .+-.|.+|+++.-
T Consensus 45 ~~Ly~~~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~-iNP~GkVP~Lv~~ 107 (264)
T PRK11752 45 LQLYSLGTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVE-INPNSKIPALLDR 107 (264)
T ss_pred eEEecCCCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHh-hCCCCCCCEEEeC
Confidence 345556799999988888875 333443 5666666643 234433 3333489999643
No 411
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=22.19 E-value=80 Score=23.50 Aligned_cols=66 Identities=14% Similarity=0.122 Sum_probs=42.3
Q ss_pred HHhcCCCeEEEEE--EcCCChhH-hhhhHHHHHHHHHcCC-cEEEEEECCCChhHHhhcCCcccccEEEEEeCCeEEEE
Q 032982 37 ASKQSDRLVVIYY--TAAWCGPC-KFIEPYVKDFAAMYTD-VQFIKIDVDWLPEAAKAFDLIDVLPTFVLVKRGKEIDR 111 (129)
Q Consensus 37 ~~~~~~k~~lv~f--~~~~c~~C-~~~~~~l~~~~~~~~~-v~~~~v~~~~~~~~~~~~~v~~~~Pt~~i~~~G~~~~~ 111 (129)
.+...+...+++= |+.-.|-= .+|...|-++++++.+ +.|+.-|.|+.-.+ |- .+.|.++|+++..
T Consensus 177 RAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlri----G~-----rIaimkdG~ivQ~ 246 (386)
T COG4175 177 RALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRI----GD-----RIAIMKDGEIVQV 246 (386)
T ss_pred HHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhc----cc-----eEEEecCCeEEEe
Confidence 3344566666541 34444443 4577788889999887 99999998875433 32 2456688887663
No 412
>PF01986 DUF123: Domain of unknown function DUF123; InterPro: IPR002837 This archaebacterial domain has no known function. In Methanocaldococcus jannaschii (Methanococcus jannaschii) it occurs with an endonuclease domain IPR003265 from INTERPRO.
Probab=22.08 E-value=43 Score=19.98 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=18.4
Q ss_pred echhHHHHHHHHHhcCCCeEEEEEEcCCChhHh
Q 032982 26 QSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCK 58 (129)
Q Consensus 26 ~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~ 58 (129)
.+...++..+.....+....+--|.+++|+ |.
T Consensus 61 ~~~~~~Ec~lA~~l~~~~~~i~gFGaSDc~-c~ 92 (99)
T PF01986_consen 61 RSEKRLECELAQALSELFEPIPGFGASDCR-CK 92 (99)
T ss_pred eCCCCHHHHHHHHHHhcCCcCCCCCCcCCC-CC
Confidence 444555555554443333337778888888 64
No 413
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=22.04 E-value=1.8e+02 Score=17.00 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=32.1
Q ss_pred EEeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCC-cEEEEEECC
Q 032982 23 MELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTD-VQFIKIDVD 82 (129)
Q Consensus 23 ~~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~v~~~ 82 (129)
.++.+.+++.. + ..+.+.+|-+|-+...+. ...+++++..+++ ..|+..-.+
T Consensus 2 kef~~~~eL~~-i---d~~kr~iIgYF~~~~~~e----Y~~f~kvA~~lr~dC~F~v~~G~ 54 (91)
T cd03070 2 KEFRNLDELNN-V---DRSKRNIIGYFESKDSDE----YDNFRKVANILRDDCSFLVGFGD 54 (91)
T ss_pred ceecCHHHHHh-h---CcCCceEEEEEcCCCChh----HHHHHHHHHHHhhcCeEEEEecc
Confidence 45556565554 2 335666666665655555 6777888888876 777655433
No 414
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=21.81 E-value=2.2e+02 Score=20.64 Aligned_cols=58 Identities=9% Similarity=-0.034 Sum_probs=36.0
Q ss_pred EeechhHHHHHHHHHhcCCCeEEEEEEcCCChhHhh--hhH--HHHHHHHHcCCcEEEEEECC
Q 032982 24 ELQSKHQWRSQYEASKQSDRLVVIYYTAAWCGPCKF--IEP--YVKDFAAMYTDVQFIKIDVD 82 (129)
Q Consensus 24 ~i~~~~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~--~~~--~l~~~~~~~~~v~~~~v~~~ 82 (129)
.+.+..++.+.+.++...+.+.+|..++|+-. -.. ... ...+++-+-.-+-+++++-.
T Consensus 183 ~~~~~~~l~~~i~~A~~~~Gps~I~v~sPC~~-~~~~~~~~~~~~~klAvetg~~plye~~~g 244 (299)
T PRK11865 183 SIGYPEDFMEKVKKAKEVEGPAYIQVLQPCPT-GWGFPPEKTIEIGRLAVETGYWPLFEIENG 244 (299)
T ss_pred eCCCHHHHHHHHHHHHhCCCCEEEEEECCCCC-CCCCCHHHHHHHHHHHHhcCceeEEEEECC
Confidence 44566777888888888889999999988433 221 111 22333433222888888754
No 415
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=21.64 E-value=76 Score=17.65 Aligned_cols=14 Identities=21% Similarity=0.439 Sum_probs=11.0
Q ss_pred ccEEEEEeCCeEEE
Q 032982 97 LPTFVLVKRGKEID 110 (129)
Q Consensus 97 ~Pt~~i~~~G~~~~ 110 (129)
.|++.++++|+.+.
T Consensus 12 ~P~v~W~k~g~~i~ 25 (81)
T cd04971 12 KPTLTWYHNGAVLN 25 (81)
T ss_pred CCcEEEEECCEECc
Confidence 45899999998664
No 416
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=21.45 E-value=2.4e+02 Score=18.26 Aligned_cols=42 Identities=12% Similarity=0.073 Sum_probs=29.6
Q ss_pred hhHHhhcCCcccccEEEEEeCCeEEEEEeCC-CHHHHHHHHHh
Q 032982 85 PEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA-KKDELQMKTEK 126 (129)
Q Consensus 85 ~~~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~-~~~~l~~~i~~ 126 (129)
....+.||+....+.+++.+...-+...... +.+.|.+++++
T Consensus 124 ~~~~~~~gv~~~~g~vvvvRPDgyVg~~~~~~~~~~l~~yf~~ 166 (167)
T cd02979 124 GDAYEKYGIDPERGAVVVVRPDQYVALVGPLDDVEALEAYFAG 166 (167)
T ss_pred ccHHHhhCCCCCCCCEEEECCCCeEEEEeccccHHHHHHHHhh
Confidence 3567899998456788888754455655555 67888888764
No 417
>PF01947 DUF98: Protein of unknown function (DUF98); InterPro: IPR002800 This entry represents a group of proteins with no known function.; PDB: 2NWI_A.
Probab=21.26 E-value=1.3e+02 Score=19.18 Aligned_cols=30 Identities=23% Similarity=0.243 Sum_probs=19.4
Q ss_pred CChhHHhhcCCccccc--EEEEEeCCeEEEEE
Q 032982 83 WLPEAAKAFDLIDVLP--TFVLVKRGKEIDRV 112 (129)
Q Consensus 83 ~~~~~~~~~~v~~~~P--t~~i~~~G~~~~~~ 112 (129)
..+.+.+.|+..+-++ ++.|+.+|+++...
T Consensus 106 ~~~~L~~~f~~~~~~~~R~Y~i~~~~~pl~~I 137 (149)
T PF01947_consen 106 ESDELEKAFGCEGPFWSRTYRIIHNGKPLMVI 137 (149)
T ss_dssp E--HHHHHHTSS-EEEEEEEEEEETTEEEEEE
T ss_pred ccHHHHHHhCCCCCcCccEEEEEECCEEEEEE
Confidence 3447888888542233 68889999987654
No 418
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=21.24 E-value=2.4e+02 Score=18.04 Aligned_cols=30 Identities=7% Similarity=0.021 Sum_probs=18.5
Q ss_pred ceEEeechhHHHHHHHHHhcCCCeEEEEEE
Q 032982 21 LVMELQSKHQWRSQYEASKQSDRLVVIYYT 50 (129)
Q Consensus 21 ~~~~i~~~~~~~~~~~~~~~~~k~~lv~f~ 50 (129)
....+++.++++..+..+...+++.+|.+.
T Consensus 141 ~~~~v~~~~el~~al~~a~~~~~p~liev~ 170 (172)
T cd02004 141 KGELVTTPEELKPALKRALASGKPALINVI 170 (172)
T ss_pred eEEEECCHHHHHHHHHHHHHcCCCEEEEEE
Confidence 345556666676666665555667666653
No 419
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=21.19 E-value=2.6e+02 Score=18.47 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=19.4
Q ss_pred EEEEEeCCeEEEEEeCC-CHHHHHHHHHhh
Q 032982 99 TFVLVKRGKEIDRVVGA-KKDELQMKTEKR 127 (129)
Q Consensus 99 t~~i~~~G~~~~~~~g~-~~~~l~~~i~~~ 127 (129)
++++|..|+++-. |. +.+++..-++++
T Consensus 140 ~~lIF~SGKvvit--Gaks~~~~~~a~~~i 167 (174)
T cd04518 140 VLLLFSSGKMVIT--GAKSEEDAKRAVEKL 167 (174)
T ss_pred EEEEeCCCEEEEE--ecCCHHHHHHHHHHH
Confidence 6788899998654 66 777777666554
No 420
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=21.17 E-value=2.6e+02 Score=18.56 Aligned_cols=27 Identities=4% Similarity=0.011 Sum_probs=21.5
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHcC
Q 032982 46 VIYYTAAWCGPCKFIEPYVKDFAAMYT 72 (129)
Q Consensus 46 lv~f~~~~c~~C~~~~~~l~~~~~~~~ 72 (129)
|=+|+..-||+|-.-.+.|+++.+.++
T Consensus 3 Id~~~D~vcPwcylg~~~l~~~~~~~~ 29 (209)
T cd03021 3 IELYYDVVSPYSYLAFEVLCRYQTAWN 29 (209)
T ss_pred eEEEEeCCChHHHHHHHHHHHHHHHhC
Confidence 345667789999999999999887653
No 421
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=20.95 E-value=61 Score=20.54 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=12.6
Q ss_pred CChhHhhhhHHHHHHHHHcCCcEEEEEE
Q 032982 53 WCGPCKFIEPYVKDFAAMYTDVQFIKID 80 (129)
Q Consensus 53 ~c~~C~~~~~~l~~~~~~~~~v~~~~v~ 80 (129)
=|+.|++...+|.. ++..++.++
T Consensus 87 PCG~CRQ~i~Ef~~-----~d~~ii~~~ 109 (134)
T COG0295 87 PCGACRQVLAEFCG-----DDTLIILLP 109 (134)
T ss_pred CcHHHHHHHHHhcC-----CCceEEEec
Confidence 37777776555532 235555554
No 422
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=20.77 E-value=2e+02 Score=16.94 Aligned_cols=51 Identities=10% Similarity=0.086 Sum_probs=34.0
Q ss_pred hcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCChhHHhhcCCc
Q 032982 39 KQSDRLVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWLPEAAKAFDLI 94 (129)
Q Consensus 39 ~~~~k~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~ 94 (129)
..+++..+| |-+.+|+. .....+..+.+.+ ++.++....+ ..++.+..|..
T Consensus 28 i~~gkaklV-iiA~D~~~--~~~~~i~~~c~~~-~Ip~~~~~~t-k~eLG~a~Gk~ 78 (99)
T PRK01018 28 IKLGKAKLV-IVASNCPK--DIKEDIEYYAKLS-GIPVYEYEGS-SVELGTLCGKP 78 (99)
T ss_pred HHcCCceEE-EEeCCCCH--HHHHHHHHHHHHc-CCCEEEECCC-HHHHHHHhCCC
Confidence 445555555 45777876 6677888888776 6776555333 46888888865
No 423
>TIGR00550 nadA quinolinate synthetase complex, A subunit. This protein, termed NadA, plays a role in the synthesis of pyridine, a precursor to NAD. The quinolinate synthetase complex consists of A protein (this protein) and B protein. B protein converts L-aspartate to iminoaspartate, an unstable reaction product which in the absence of A protein is spontaneously hydrolyzed to form oxaloacetate. The A protein, NadA, converts iminoaspartate to quinolate.
Probab=20.60 E-value=2.4e+02 Score=20.54 Aligned_cols=53 Identities=13% Similarity=0.145 Sum_probs=32.7
Q ss_pred hHHHHHHHHHhcCCCeEEEEEEcCCChhHhhhhH-HHHHHHHHcCC-cEEEEEECC
Q 032982 29 HQWRSQYEASKQSDRLVVIYYTAAWCGPCKFIEP-YVKDFAAMYTD-VQFIKIDVD 82 (129)
Q Consensus 29 ~~~~~~~~~~~~~~k~~lv~f~~~~c~~C~~~~~-~l~~~~~~~~~-v~~~~v~~~ 82 (129)
..+.+.+ +....+|.+++==|...|+--..+.+ .+.++.+++|+ +.+..++..
T Consensus 62 ~fMae~a-~~l~p~k~vilp~~~a~C~~a~~~~~~~i~~lk~~~Pda~vvah~n~~ 116 (310)
T TIGR00550 62 HFMGETA-KILNPEKTVLMPDLGAGCSMADMCPPEEFKKLKERHPDAFVVTYVNTT 116 (310)
T ss_pred chHHHHH-HHhCCCCEEEccCCCCCCccccccCHHHHHHHHHHCCCCEEEEECCCC
Confidence 4455444 33456676644337777777655444 67889999998 445555543
No 424
>PF15409 PH_8: Pleckstrin homology domain
Probab=20.56 E-value=1.9e+02 Score=16.82 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=20.7
Q ss_pred EEEEeCCeEEEEEeCCCHHHHHHHHHhh
Q 032982 100 FVLVKRGKEIDRVVGAKKDELQMKTEKR 127 (129)
Q Consensus 100 ~~i~~~G~~~~~~~g~~~~~l~~~i~~~ 127 (129)
-+.++.|..+..+...+.++++.|+..+
T Consensus 58 ~I~idsg~~i~hLKa~s~~~f~~Wv~aL 85 (89)
T PF15409_consen 58 RIDIDSGDEIWHLKAKSQEDFQRWVSAL 85 (89)
T ss_pred EEEEEcCCeEEEEEcCCHHHHHHHHHHH
Confidence 3444667777777777999999999765
No 425
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=20.30 E-value=91 Score=17.04 Aligned_cols=14 Identities=7% Similarity=0.257 Sum_probs=10.9
Q ss_pred ccEEEEEeCCeEEE
Q 032982 97 LPTFVLVKRGKEID 110 (129)
Q Consensus 97 ~Pt~~i~~~G~~~~ 110 (129)
.|++.++++|+.+.
T Consensus 12 ~P~i~W~k~~~~i~ 25 (75)
T cd05892 12 PPKIFWKRNNEMVQ 25 (75)
T ss_pred CCeEEEEECCEECc
Confidence 56899999988753
No 426
>PRK00394 transcription factor; Reviewed
Probab=20.23 E-value=2.7e+02 Score=18.42 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=19.0
Q ss_pred EEEEEeCCeEEEEEeCC-CHHHHHHHHHhh
Q 032982 99 TFVLVKRGKEIDRVVGA-KKDELQMKTEKR 127 (129)
Q Consensus 99 t~~i~~~G~~~~~~~g~-~~~~l~~~i~~~ 127 (129)
++++|..|+++-. |. +.+++..-++++
T Consensus 141 ~~lIF~SGKvvit--Gaks~~~~~~a~~~i 168 (179)
T PRK00394 141 VVLLFGSGKLVIT--GAKSEEDAEKAVEKI 168 (179)
T ss_pred EEEEEcCCEEEEE--ecCCHHHHHHHHHHH
Confidence 6788899988553 66 777776666554
No 427
>KOG3286 consensus Selenoprotein T [General function prediction only]
Probab=20.18 E-value=3e+02 Score=18.91 Aligned_cols=71 Identities=17% Similarity=0.147 Sum_probs=49.6
Q ss_pred eEEEEEEcCCChhHhhhhHHHHHHHHHcCCcEEEEEECCCC---hhHHhhcCCcccccEEEEEeCCeEEEEEeCC
Q 032982 44 LVVIYYTAAWCGPCKFIEPYVKDFAAMYTDVQFIKIDVDWL---PEAAKAFDLIDVLPTFVLVKRGKEIDRVVGA 115 (129)
Q Consensus 44 ~~lv~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~---~~~~~~~~v~~~~Pt~~i~~~G~~~~~~~g~ 115 (129)
+.+=.+|--.|+|=+.+....+=+..+||++.+..-|.... .-+++-..+- .+-.+.++-.|+..-.+.|.
T Consensus 70 ptl~i~fCvSCgYk~af~~~~~~l~ekyPgl~IegaNy~Pp~~kr~lAk~v~v~-k~gvIglii~G~~pF~~iGl 143 (226)
T KOG3286|consen 70 PTLEINFCVSCGYKQAFEQYKKFLKEKYPGLDIEGANYPPPAWKRYLAKVVSVV-KMGVIGLIIGGKNPFEFIGL 143 (226)
T ss_pred CcEEEEEEEecCcHHHHHHHHHHHHhhCCCceeecCcCCCchHHHHHHHHHHHH-hheeEEEEeccCCccceecC
Confidence 56666778889997777777777888899988888887743 2345555555 45555556677666667777
No 428
>PF06999 Suc_Fer-like: Sucrase/ferredoxin-like; InterPro: IPR009737 This family contains a number of bacterial and eukaryotic proteins approximately 400 residues long that resemble ferredoxin and appear to have sucrolytic activity [].
Probab=20.16 E-value=2e+02 Score=19.45 Aligned_cols=31 Identities=6% Similarity=0.087 Sum_probs=22.6
Q ss_pred cccEEEEEeCCeEEEEEeCC-CHHHHHHHHHh
Q 032982 96 VLPTFVLVKRGKEIDRVVGA-KKDELQMKTEK 126 (129)
Q Consensus 96 ~~Pt~~i~~~G~~~~~~~g~-~~~~l~~~i~~ 126 (129)
--|++++|..++.-....|. +++.+..+|+.
T Consensus 183 fAgNvIiy~~~~p~g~wyGrv~p~~v~~iv~~ 214 (230)
T PF06999_consen 183 FAGNVIIYSKPKPDGIWYGRVTPEDVEGIVDA 214 (230)
T ss_pred ecCeEEEEecCCCcEEEEEeeCHHHHHHHHHH
Confidence 35788899444455566677 88999888887
No 429
>TIGR02949 anti_SigH_actin anti-sigma factor, TIGR02949 family. This group of anti-sigma factors are associated in an apparent operon with a family of sigma-70 family sigma factors (TIGR02947). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is restricted to the Actinobacteria.
Probab=20.14 E-value=97 Score=17.63 Aligned_cols=21 Identities=10% Similarity=0.074 Sum_probs=15.0
Q ss_pred cCCChhHhhhhHHHHHHHHHc
Q 032982 51 AAWCGPCKFIEPYVKDFAAMY 71 (129)
Q Consensus 51 ~~~c~~C~~~~~~l~~~~~~~ 71 (129)
-..|+.|+........+...+
T Consensus 36 L~~C~~C~~e~~~~~~~~~~L 56 (84)
T TIGR02949 36 LEACPECLEEYGLEQAVKKLL 56 (84)
T ss_pred HHhCHHHHHHHHHHHHHHHHH
Confidence 458999998887666665543
No 430
>PF11551 Omp28: Outer membrane protein Omp28; InterPro: IPR021615 Omp28 is a 28kDa outer membrane protein from Porphyromonas gingivalis. Omp28 is thought to be a surface adhesion/receptor protein. Omp28 is expressed in a wide distribution of P.gingivalis strains []. ; PDB: 2R2C_A.
Probab=20.11 E-value=35 Score=22.69 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=0.0
Q ss_pred CChhHHhhcCCcccccEEEEEeCCeEE
Q 032982 83 WLPEAAKAFDLIDVLPTFVLVKRGKEI 109 (129)
Q Consensus 83 ~~~~~~~~~~v~~~~Pt~~i~~~G~~~ 109 (129)
....+.+.+++. ++|+.++.|.+...
T Consensus 7 ~s~~~~~~~~v~-g~P~~~vNR~~~~~ 32 (184)
T PF11551_consen 7 QSSALMKQWGVS-GYPSAMVNRKGGWL 32 (184)
T ss_dssp ---------------------------
T ss_pred hhhcccccccCC-CCCeEEEECCCccc
Confidence 345677899999 99999998765443
Done!