BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032984
         (129 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
 pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
 pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
 pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
 pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
          Length = 842

 Score = 26.9 bits (58), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 9/44 (20%)

Query: 53  GIMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGY 96
           G  CE C G+GW++ +               +Y  CP C    Y
Sbjct: 638 GGRCEHCQGEGWVMVELLFLPS---------VYAPCPVCHGTRY 672


>pdb|1G40|A Chain A, Crystal Structure Of A Complement Protein That Regulates
          Both Pathways Of Complement Activation And Binds
          Heparan Sulfate Proteoglycans
 pdb|1G40|B Chain B, Crystal Structure Of A Complement Protein That Regulates
          Both Pathways Of Complement Activation And Binds
          Heparan Sulfate Proteoglycans
 pdb|1G44|A Chain A, Crystal Structure Of A Complement Control Protein That
          Regulates Both Pathways Of Complement Activation And
          Binds Heparan Sulfate Proteoglycans
 pdb|1G44|B Chain B, Crystal Structure Of A Complement Control Protein That
          Regulates Both Pathways Of Complement Activation And
          Binds Heparan Sulfate Proteoglycans
 pdb|1G44|C Chain C, Crystal Structure Of A Complement Control Protein That
          Regulates Both Pathways Of Complement Activation And
          Binds Heparan Sulfate Proteoglycans
 pdb|1RID|A Chain A, Vaccinia Complement Protein In Complex With Heparin
 pdb|1RID|B Chain B, Vaccinia Complement Protein In Complex With Heparin
 pdb|1Y8E|A Chain A, Vcp:suramin Complex
 pdb|1Y8E|B Chain B, Vcp:suramin Complex
          Length = 244

 Score = 26.6 bits (57), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 13/53 (24%)

Query: 42 LCAPVKQEVEVGIMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAV 94
          LC P  ++ ++G +   C G GW + + C             I RRCP+ R +
Sbjct: 34 LCLPGYRKQKMGPIYAKCTGTGWTLFNQC-------------IKRRCPSPRDI 73


>pdb|2CTT|A Chain A, Solution Structure Of Zinc Finger Domain From Human Dnaj
           Subfamily A Menber 3
          Length = 104

 Score = 26.2 bits (56), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 9/68 (13%)

Query: 46  VKQEVEVGIM--CESCNGKGW------LVCDFCGGQKTNVKAQNNRIYRR-CPTCRAVGY 96
           V +E  V IM  CE CNGKG         C +CGG           + R  C  C   G 
Sbjct: 19  VNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGS 78

Query: 97  VLCSKCKV 104
           ++ S C V
Sbjct: 79  IIISPCVV 86


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.139    0.455 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,313,362
Number of Sequences: 62578
Number of extensions: 108288
Number of successful extensions: 217
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 216
Number of HSP's gapped (non-prelim): 5
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)