Query 032984
Match_columns 129
No_of_seqs 140 out of 405
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 08:21:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032984.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032984hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2824 Glutaredoxin-related p 99.7 4.4E-17 9.6E-22 135.1 4.6 74 6-103 206-280 (281)
2 cd03031 GRX_GRX_like Glutaredo 99.6 2.3E-16 5E-21 119.8 3.0 71 6-99 75-147 (147)
3 PLN03165 chaperone protein dna 99.0 6.9E-10 1.5E-14 81.6 5.7 59 49-107 37-97 (111)
4 PF00684 DnaJ_CXXCXGXG: DnaJ c 98.8 1.6E-08 3.6E-13 66.9 5.0 50 56-105 1-65 (66)
5 COG0484 DnaJ DnaJ-class molecu 98.7 1.5E-08 3.2E-13 87.3 4.5 58 50-107 139-208 (371)
6 PRK14279 chaperone protein Dna 98.4 5E-07 1.1E-11 77.5 5.3 57 51-107 171-237 (392)
7 PRK14286 chaperone protein Dna 98.3 6E-07 1.3E-11 76.4 5.1 57 51-107 148-214 (372)
8 PRK14285 chaperone protein Dna 98.3 6.8E-07 1.5E-11 75.9 4.9 57 51-107 144-210 (365)
9 PRK14300 chaperone protein Dna 98.3 9E-07 1.9E-11 75.3 5.3 57 51-107 143-209 (372)
10 PRK14301 chaperone protein Dna 98.3 8E-07 1.7E-11 75.7 4.6 56 51-106 142-207 (373)
11 PRK14284 chaperone protein Dna 98.3 8.8E-07 1.9E-11 75.8 4.7 56 51-106 156-221 (391)
12 PRK14298 chaperone protein Dna 98.3 9.4E-07 2E-11 75.4 4.8 58 51-108 139-210 (377)
13 PRK10767 chaperone protein Dna 98.3 1.2E-06 2.6E-11 74.2 5.2 57 51-107 140-206 (371)
14 PRK14295 chaperone protein Dna 98.3 1.2E-06 2.6E-11 75.1 5.1 56 51-106 164-229 (389)
15 PRK14288 chaperone protein Dna 98.2 1.4E-06 3E-11 74.1 5.2 56 51-106 138-202 (369)
16 KOG2813 Predicted molecular ch 98.2 7.9E-07 1.7E-11 76.4 3.3 62 53-114 187-282 (406)
17 PRK14294 chaperone protein Dna 98.2 1.6E-06 3.4E-11 73.5 5.1 57 51-107 142-208 (366)
18 PRK14278 chaperone protein Dna 98.2 1.7E-06 3.8E-11 73.8 5.2 57 51-107 137-207 (378)
19 PRK14296 chaperone protein Dna 98.2 1.4E-06 3E-11 74.3 4.6 56 51-106 147-216 (372)
20 PRK14282 chaperone protein Dna 98.2 2.1E-06 4.6E-11 72.8 5.4 56 51-106 150-219 (369)
21 PRK14291 chaperone protein Dna 98.2 2.2E-06 4.7E-11 73.2 4.9 56 51-106 154-218 (382)
22 PRK14276 chaperone protein Dna 98.1 2.8E-06 6.1E-11 72.5 4.9 57 51-107 144-214 (380)
23 PRK14280 chaperone protein Dna 98.1 3.4E-06 7.4E-11 71.9 5.1 57 51-107 141-211 (376)
24 TIGR02349 DnaJ_bact chaperone 98.1 3.6E-06 7.8E-11 70.7 4.9 56 51-106 141-210 (354)
25 PRK14289 chaperone protein Dna 98.1 3.4E-06 7.4E-11 71.9 4.6 56 51-106 152-221 (386)
26 PRK14277 chaperone protein Dna 98.1 4E-06 8.6E-11 71.7 5.0 58 51-108 153-224 (386)
27 PRK14287 chaperone protein Dna 98.1 4.7E-06 1E-10 71.0 4.8 58 51-108 136-207 (371)
28 PRK14281 chaperone protein Dna 98.1 5E-06 1.1E-10 71.4 4.8 57 51-107 161-230 (397)
29 PTZ00037 DnaJ_C chaperone prot 98.1 5.5E-06 1.2E-10 72.1 5.0 56 51-106 148-218 (421)
30 PRK14290 chaperone protein Dna 98.0 7.5E-06 1.6E-10 69.4 5.4 57 51-107 147-216 (365)
31 PRK14297 chaperone protein Dna 98.0 7.1E-06 1.5E-10 69.9 4.9 56 51-106 146-215 (380)
32 PRK14293 chaperone protein Dna 98.0 1.1E-05 2.4E-10 68.6 4.9 56 51-106 141-210 (374)
33 PRK14283 chaperone protein Dna 97.9 1.3E-05 2.9E-10 68.2 4.7 57 51-107 144-214 (378)
34 PRK14292 chaperone protein Dna 97.8 2.6E-05 5.6E-10 66.1 4.8 57 51-107 137-208 (371)
35 PF00684 DnaJ_CXXCXGXG: DnaJ c 97.7 4E-05 8.6E-10 50.7 3.2 38 52-95 14-66 (66)
36 COG0484 DnaJ DnaJ-class molecu 97.3 0.00022 4.8E-09 61.8 3.5 40 52-98 158-210 (371)
37 COG1107 Archaea-specific RecJ- 97.3 0.00023 4.9E-09 65.4 3.6 53 54-106 3-78 (715)
38 KOG0712 Molecular chaperone (D 97.3 0.00026 5.6E-09 60.8 3.5 55 52-106 126-196 (337)
39 COG1107 Archaea-specific RecJ- 97.0 0.00072 1.6E-08 62.2 4.2 53 52-111 17-94 (715)
40 PRK14296 chaperone protein Dna 97.0 0.00066 1.4E-08 58.0 3.4 39 53-98 166-219 (372)
41 PRK14298 chaperone protein Dna 96.9 0.00082 1.8E-08 57.5 3.0 39 53-98 158-211 (377)
42 PRK14300 chaperone protein Dna 96.9 0.00091 2E-08 57.0 3.3 40 52-98 161-211 (372)
43 PRK14285 chaperone protein Dna 96.8 0.00098 2.1E-08 56.8 3.2 39 53-98 163-212 (365)
44 PRK14288 chaperone protein Dna 96.8 0.0012 2.5E-08 56.4 3.6 39 53-98 156-205 (369)
45 PRK14286 chaperone protein Dna 96.8 0.001 2.2E-08 56.8 3.2 39 53-98 167-216 (372)
46 PRK14279 chaperone protein Dna 96.8 0.001 2.2E-08 57.2 3.3 40 52-98 189-239 (392)
47 PRK10767 chaperone protein Dna 96.8 0.001 2.2E-08 56.5 3.1 39 53-98 159-208 (371)
48 PRK14280 chaperone protein Dna 96.8 0.0012 2.6E-08 56.4 3.5 39 53-98 160-213 (376)
49 PRK14282 chaperone protein Dna 96.7 0.0013 2.8E-08 56.0 3.4 40 52-98 168-222 (369)
50 PRK14278 chaperone protein Dna 96.7 0.0013 2.7E-08 56.4 3.2 39 53-98 156-209 (378)
51 PRK14284 chaperone protein Dna 96.7 0.0011 2.4E-08 56.9 2.8 39 52-97 174-223 (391)
52 PRK14301 chaperone protein Dna 96.7 0.0012 2.6E-08 56.4 2.9 39 53-98 161-210 (373)
53 PTZ00037 DnaJ_C chaperone prot 96.6 0.0017 3.8E-08 56.7 3.5 42 52-98 165-221 (421)
54 PRK14276 chaperone protein Dna 96.6 0.0014 3E-08 56.0 2.9 39 53-98 163-216 (380)
55 PRK14297 chaperone protein Dna 96.6 0.0019 4.1E-08 55.2 3.2 39 53-98 165-218 (380)
56 PRK14290 chaperone protein Dna 96.5 0.0023 4.9E-08 54.4 3.5 40 52-98 164-218 (365)
57 PRK14294 chaperone protein Dna 96.5 0.002 4.3E-08 54.8 3.1 39 53-98 161-210 (366)
58 PRK14289 chaperone protein Dna 96.5 0.002 4.2E-08 55.1 3.0 40 52-98 170-224 (386)
59 PRK14277 chaperone protein Dna 96.5 0.0021 4.5E-08 55.1 3.1 39 53-98 172-225 (386)
60 TIGR02349 DnaJ_bact chaperone 96.5 0.0023 5E-08 53.9 3.3 39 53-98 160-213 (354)
61 PRK14295 chaperone protein Dna 96.5 0.0023 5E-08 55.0 3.3 39 53-98 183-232 (389)
62 PRK14281 chaperone protein Dna 96.5 0.0025 5.4E-08 54.9 3.4 40 52-98 178-232 (397)
63 PLN03165 chaperone protein dna 96.5 0.0043 9.3E-08 45.7 4.0 37 52-98 51-99 (111)
64 PRK14293 chaperone protein Dna 96.3 0.0034 7.4E-08 53.5 3.0 39 53-98 160-213 (374)
65 PRK14287 chaperone protein Dna 96.2 0.0042 9E-08 53.1 3.0 39 53-98 155-208 (371)
66 PRK14292 chaperone protein Dna 96.1 0.0047 1E-07 52.5 3.1 39 53-98 157-210 (371)
67 PRK14283 chaperone protein Dna 96.1 0.0058 1.3E-07 52.2 3.4 40 52-98 162-216 (378)
68 PRK14291 chaperone protein Dna 96.0 0.0066 1.4E-07 52.0 3.7 38 53-98 173-221 (382)
69 TIGR02642 phage_xxxx uncharact 96.0 0.0046 1E-07 49.2 2.3 25 53-77 99-128 (186)
70 KOG2813 Predicted molecular ch 95.6 0.0063 1.4E-07 52.8 1.8 37 52-98 233-269 (406)
71 TIGR02642 phage_xxxx uncharact 95.3 0.013 2.7E-07 46.7 2.6 30 64-98 99-128 (186)
72 KOG0712 Molecular chaperone (D 92.5 0.16 3.4E-06 43.9 3.8 42 52-98 142-199 (337)
73 TIGR00630 uvra excinuclease AB 88.9 0.3 6.6E-06 46.8 2.6 25 98-123 761-791 (924)
74 KOG0715 Molecular chaperone (D 88.3 0.14 3E-06 42.8 -0.1 56 51-106 162-227 (288)
75 PRK00635 excinuclease ABC subu 83.5 0.73 1.6E-05 47.3 2.2 16 107-123 1647-1662(1809)
76 PF07092 DUF1356: Protein of u 82.5 0.7 1.5E-05 38.3 1.4 28 52-79 26-53 (238)
77 PRK00349 uvrA excinuclease ABC 81.5 1.2 2.6E-05 42.9 2.8 21 99-120 764-790 (943)
78 PF13719 zinc_ribbon_5: zinc-r 79.8 1.3 2.7E-05 26.3 1.5 29 65-93 3-33 (37)
79 PRK03564 formate dehydrogenase 78.5 3.2 6.9E-05 35.5 4.1 16 99-114 255-270 (309)
80 PF13453 zf-TFIIB: Transcripti 76.9 2 4.4E-05 25.6 1.8 19 99-121 22-40 (41)
81 TIGR03655 anti_R_Lar restricti 75.9 3.9 8.4E-05 25.7 3.0 14 65-78 2-15 (53)
82 PF14354 Lar_restr_allev: Rest 75.6 3.1 6.8E-05 26.2 2.6 13 65-78 4-16 (61)
83 TIGR00630 uvra excinuclease AB 75.3 2.2 4.7E-05 41.1 2.5 31 67-97 739-771 (924)
84 PF04216 FdhE: Protein involve 75.0 3.1 6.7E-05 34.2 3.0 56 52-114 171-256 (290)
85 PRK04023 DNA polymerase II lar 74.2 4.1 9E-05 40.2 4.0 49 49-106 622-672 (1121)
86 PRK14714 DNA polymerase II lar 70.4 4 8.6E-05 41.0 3.0 60 52-120 666-733 (1337)
87 cd03031 GRX_GRX_like Glutaredo 69.2 4.5 9.8E-05 30.7 2.6 27 86-112 100-126 (147)
88 PRK00349 uvrA excinuclease ABC 68.6 3.5 7.6E-05 39.9 2.2 14 84-97 760-773 (943)
89 COG0178 UvrA Excinuclease ATPa 67.6 3.7 7.9E-05 39.8 2.1 29 66-94 732-762 (935)
90 KOG2824 Glutaredoxin-related p 66.1 5 0.00011 34.1 2.4 26 86-111 230-255 (281)
91 PF13901 DUF4206: Domain of un 65.0 2.8 6.1E-05 33.1 0.7 50 52-103 141-196 (202)
92 PF03589 Antiterm: Antitermina 63.2 3.3 7.1E-05 29.5 0.7 41 66-106 7-53 (95)
93 PF13717 zinc_ribbon_4: zinc-r 62.4 5.3 0.00011 23.6 1.4 29 65-93 3-33 (36)
94 COG0178 UvrA Excinuclease ATPa 62.0 6.6 0.00014 38.2 2.7 22 54-75 731-764 (935)
95 PRK09710 lar restriction allev 60.8 12 0.00026 25.4 3.0 30 65-94 7-36 (64)
96 TIGR02098 MJ0042_CXXC MJ0042 f 59.7 7.6 0.00016 22.4 1.8 29 65-93 3-33 (38)
97 PF14353 CpXC: CpXC protein 58.1 12 0.00027 26.8 3.0 34 65-98 2-51 (128)
98 PF07295 DUF1451: Protein of u 57.5 9.1 0.0002 29.3 2.3 36 60-98 108-143 (146)
99 PRK00635 excinuclease ABC subu 55.2 8.4 0.00018 39.9 2.3 11 54-64 1608-1618(1809)
100 TIGR01562 FdhE formate dehydro 55.2 14 0.00031 31.4 3.3 24 52-75 209-235 (305)
101 KOG0715 Molecular chaperone (D 50.7 6.7 0.00014 32.8 0.7 43 49-98 177-230 (288)
102 COG1198 PriA Primosomal protei 49.7 25 0.00055 33.4 4.3 48 53-106 435-485 (730)
103 PF08271 TF_Zn_Ribbon: TFIIB z 49.4 23 0.0005 21.1 2.8 9 66-74 2-10 (43)
104 PF12760 Zn_Tnp_IS1595: Transp 48.9 25 0.00054 21.3 2.9 26 65-92 19-44 (46)
105 PRK11032 hypothetical protein; 48.0 16 0.00034 28.6 2.3 36 60-98 120-155 (160)
106 PRK03988 translation initiatio 45.2 27 0.0006 26.4 3.2 31 65-95 103-133 (138)
107 TIGR00311 aIF-2beta translatio 45.0 29 0.00062 26.2 3.3 32 65-96 98-129 (133)
108 PF15616 TerY-C: TerY-C metal 44.1 30 0.00066 26.2 3.3 17 54-71 78-95 (131)
109 PF08273 Prim_Zn_Ribbon: Zinc- 42.9 21 0.00046 21.8 1.9 29 65-93 4-34 (40)
110 smart00653 eIF2B_5 domain pres 42.3 33 0.0007 25.0 3.1 30 64-93 80-109 (110)
111 PF08792 A2L_zn_ribbon: A2L zi 41.1 41 0.00089 19.6 2.9 11 66-76 5-15 (33)
112 PF14205 Cys_rich_KTR: Cystein 40.5 37 0.00081 22.4 2.9 16 62-77 2-17 (55)
113 smart00709 Zpr1 Duplicated dom 40.3 19 0.00041 27.8 1.7 10 66-75 2-11 (160)
114 TIGR00595 priA primosomal prot 40.3 38 0.00082 30.3 3.8 47 54-105 214-262 (505)
115 PF07092 DUF1356: Protein of u 40.1 12 0.00027 31.0 0.7 21 86-106 28-48 (238)
116 PF03367 zf-ZPR1: ZPR1 zinc-fi 39.4 31 0.00068 26.5 2.8 11 66-76 3-13 (161)
117 PRK12336 translation initiatio 38.6 40 0.00086 26.8 3.3 32 65-96 99-130 (201)
118 PF01873 eIF-5_eIF-2B: Domain 38.3 28 0.00061 25.9 2.3 30 64-93 93-122 (125)
119 PF13878 zf-C2H2_3: zinc-finge 38.0 26 0.00056 21.1 1.7 25 95-122 12-36 (41)
120 COG2888 Predicted Zn-ribbon RN 37.7 21 0.00046 24.0 1.4 20 85-105 38-58 (61)
121 PRK00398 rpoP DNA-directed RNA 36.4 44 0.00096 20.1 2.6 7 66-72 5-11 (46)
122 PF14803 Nudix_N_2: Nudix N-te 34.4 40 0.00086 19.8 2.1 27 66-92 2-29 (34)
123 smart00778 Prim_Zn_Ribbon Zinc 34.4 34 0.00073 20.6 1.8 29 64-92 3-32 (37)
124 PRK03564 formate dehydrogenase 34.0 49 0.0011 28.3 3.4 68 50-120 209-284 (309)
125 PF03811 Zn_Tnp_IS1: InsA N-te 33.8 59 0.0013 19.3 2.8 28 65-92 6-36 (36)
126 smart00834 CxxC_CXXC_SSSS Puta 32.6 49 0.0011 18.8 2.3 9 85-93 26-34 (41)
127 PF13408 Zn_ribbon_recom: Reco 32.0 97 0.0021 18.6 3.7 35 62-96 3-37 (58)
128 PF03833 PolC_DP2: DNA polymer 31.6 16 0.00034 35.6 0.0 48 49-104 651-700 (900)
129 PRK14892 putative transcriptio 30.5 60 0.0013 23.4 2.9 22 93-114 39-60 (99)
130 COG2260 Predicted Zn-ribbon RN 30.4 27 0.00057 23.4 0.9 29 85-113 5-34 (59)
131 PF10080 DUF2318: Predicted me 29.2 31 0.00068 24.9 1.2 22 52-73 34-61 (102)
132 PF09723 Zn-ribbon_8: Zinc rib 29.0 76 0.0016 18.9 2.7 9 85-93 26-34 (42)
133 TIGR01562 FdhE formate dehydro 28.5 53 0.0012 28.0 2.7 45 63-114 209-270 (305)
134 KOG4218 Nuclear hormone recept 27.9 17 0.00036 32.5 -0.5 54 51-109 13-80 (475)
135 COG1645 Uncharacterized Zn-fin 27.6 62 0.0013 24.6 2.6 18 86-103 29-51 (131)
136 PF05180 zf-DNL: DNL zinc fing 27.2 41 0.00089 22.7 1.4 49 66-121 6-60 (66)
137 smart00659 RPOLCX RNA polymera 26.9 66 0.0014 19.8 2.2 7 66-72 4-10 (44)
138 TIGR00595 priA primosomal prot 26.9 56 0.0012 29.2 2.6 37 52-96 221-264 (505)
139 PRK14890 putative Zn-ribbon RN 26.2 46 0.001 22.2 1.5 43 52-105 6-56 (59)
140 PRK00420 hypothetical protein; 25.5 54 0.0012 24.2 1.9 20 86-105 24-49 (112)
141 COG5082 AIR1 Arginine methyltr 25.1 42 0.00091 27.1 1.4 45 52-98 59-110 (190)
142 COG3058 FdhE Uncharacterized p 24.9 5.6 0.00012 34.2 -3.8 36 85-120 225-281 (308)
143 PF09297 zf-NADH-PPase: NADH p 24.7 63 0.0014 18.1 1.7 24 66-92 5-28 (32)
144 PRK05580 primosome assembly pr 24.5 56 0.0012 30.3 2.3 48 53-105 381-430 (679)
145 PF00098 zf-CCHC: Zinc knuckle 24.5 45 0.00098 16.8 1.0 8 67-74 3-10 (18)
146 PRK00564 hypA hydrogenase nick 24.5 54 0.0012 23.8 1.8 25 51-75 69-99 (117)
147 PF04438 zf-HIT: HIT zinc fing 24.4 48 0.001 18.8 1.2 19 86-104 3-21 (30)
148 COG0846 SIR2 NAD-dependent pro 24.2 85 0.0018 25.9 3.1 16 99-114 149-167 (250)
149 PRK12380 hydrogenase nickel in 23.9 51 0.0011 23.8 1.5 21 85-105 70-95 (113)
150 PHA00626 hypothetical protein 23.9 71 0.0015 21.3 2.1 17 86-102 12-29 (59)
151 PF04236 Transp_Tc5_C: Tc5 tra 22.9 71 0.0015 21.2 2.0 23 51-73 25-49 (63)
152 PF10058 DUF2296: Predicted in 22.5 78 0.0017 20.3 2.0 29 65-93 23-52 (54)
153 PRK14873 primosome assembly pr 22.2 1.2E+02 0.0026 28.5 3.9 48 54-106 384-432 (665)
154 PRK05580 primosome assembly pr 21.4 95 0.0021 28.8 3.1 36 52-95 389-431 (679)
155 PF05129 Elf1: Transcription e 21.4 84 0.0018 21.6 2.2 13 92-104 42-54 (81)
156 PF09862 DUF2089: Protein of u 21.2 90 0.0019 23.1 2.4 16 88-103 1-19 (113)
157 PF07754 DUF1610: Domain of un 20.8 74 0.0016 17.5 1.4 6 86-91 17-22 (24)
158 PRK00488 pheS phenylalanyl-tRN 20.7 44 0.00096 29.0 0.8 24 52-78 259-282 (339)
159 COG3809 Uncharacterized protei 20.5 92 0.002 22.2 2.2 28 65-93 2-29 (88)
No 1
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=4.4e-17 Score=135.06 Aligned_cols=74 Identities=30% Similarity=0.530 Sum_probs=64.5
Q ss_pred cceeeeeccccchhccCCCCCCCCCCCCCCCCCCCcccCcccccccccccCCCCCCcCeeeCCCCCCCceEEecc-CCce
Q 032984 6 VPVVASLAKVKLFSIMPSSSSSSRSRPSHSLKSKPALCAPVKQEVEVGIMCESCNGKGWLVCDFCGGQKTNVKAQ-NNRI 84 (129)
Q Consensus 6 ~~v~~l~e~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~G~G~v~C~~C~GSG~v~~~~-g~~~ 84 (129)
-||++|||+|+|++||.++|- .....|+.|+|.||++|..||||.+++... ....
T Consensus 206 eeV~~LnE~GkL~~lL~~~p~------------------------~~~~~C~~CGg~rFlpC~~C~GS~kv~~~~~~~~~ 261 (281)
T KOG2824|consen 206 EEVVRLNEEGKLGKLLKGIPC------------------------EGGGVCESCGGARFLPCSNCHGSCKVHEEEEDDGG 261 (281)
T ss_pred HHhhhhhhcchHHHHHhcCCC------------------------CCCCcCCCcCCcceEecCCCCCceeeeeeccCCCc
Confidence 379999999999999998862 245889999999999999999999998732 2345
Q ss_pred eeeCccccccceeeCCCCc
Q 032984 85 YRRCPTCRAVGYVLCSKCK 103 (129)
Q Consensus 85 ~~rC~~CnG~Glv~Cp~C~ 103 (129)
+.+|+.||+||+++||.|.
T Consensus 262 ~~rC~~CNENGLvrCp~Cs 280 (281)
T KOG2824|consen 262 VLRCLECNENGLVRCPVCS 280 (281)
T ss_pred EEECcccCCCCceeCCccC
Confidence 8999999999999999996
No 2
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.61 E-value=2.3e-16 Score=119.84 Aligned_cols=71 Identities=24% Similarity=0.511 Sum_probs=60.5
Q ss_pred cceeeeeccccchhccCCCCCCCCCCCCCCCCCCCcccCcccccccccccCCCCCCcCeeeCCCCCCCceEEeccC--Cc
Q 032984 6 VPVVASLAKVKLFSIMPSSSSSSRSRPSHSLKSKPALCAPVKQEVEVGIMCESCNGKGWLVCDFCGGQKTNVKAQN--NR 83 (129)
Q Consensus 6 ~~v~~l~e~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~G~G~v~C~~C~GSG~v~~~~g--~~ 83 (129)
.+|.+|||+|+|.++|...|.. .....|+.|+|.||++|..|+||.+++..++ ..
T Consensus 75 del~~L~e~G~L~~lL~~~~~~-----------------------~~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~~~~ 131 (147)
T cd03031 75 EEVLRLNESGELRKLLKGIRAR-----------------------AGGGVCEGCGGARFVPCSECNGSCKVFAENATAAG 131 (147)
T ss_pred HHHHHHHHcCCHHHHHhhcccc-----------------------cCCCCCCCCCCcCeEECCCCCCcceEEeccCcccc
Confidence 4688999999999999876432 2457799999999999999999999987652 34
Q ss_pred eeeeCccccccceeeC
Q 032984 84 IYRRCPTCRAVGYVLC 99 (129)
Q Consensus 84 ~~~rC~~CnG~Glv~C 99 (129)
...+|+.||+||+++|
T Consensus 132 ~~~rC~~Cnengl~~c 147 (147)
T cd03031 132 GFLRCPECNENGLVRC 147 (147)
T ss_pred cEEECCCCCccccccC
Confidence 5799999999999998
No 3
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=99.00 E-value=6.9e-10 Score=81.59 Aligned_cols=59 Identities=25% Similarity=0.572 Sum_probs=50.0
Q ss_pred cccccccCCCCCCcCeeeCCCCCCCceEEecc-C-CceeeeCccccccceeeCCCCcccee
Q 032984 49 EVEVGIMCESCNGKGWLVCDFCGGQKTNVKAQ-N-NRIYRRCPTCRAVGYVLCSKCKVFKC 107 (129)
Q Consensus 49 ~~~~~~~C~~C~G~G~v~C~~C~GSG~v~~~~-g-~~~~~rC~~CnG~Glv~Cp~C~G~~~ 107 (129)
+......|..|+|+|...|..|+|+|.+.... + .....+|+.|+|.|.+.|+.|.|.+.
T Consensus 37 ~~~~~v~C~~C~GsG~~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~~C~~C~G~G~ 97 (111)
T PLN03165 37 KRENTQPCFPCSGTGAQVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSLTCTTCQGSGI 97 (111)
T ss_pred hhccCCCCCCCCCCCCcCCCCCcCcCeEEEEeCCcEEEEEECCCCCCcceeeCCCCCCCEE
Confidence 34567899999999999999999999986543 2 24578999999999999999999883
No 4
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=98.75 E-value=1.6e-08 Score=66.94 Aligned_cols=50 Identities=32% Similarity=0.834 Sum_probs=38.2
Q ss_pred CCCCCCcCe------eeCCCCCCCceEEecc----CC-ceeeeCccccccceee----CCCCccc
Q 032984 56 CESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL----CSKCKVF 105 (129)
Q Consensus 56 C~~C~G~G~------v~C~~C~GSG~v~~~~----g~-~~~~rC~~CnG~Glv~----Cp~C~G~ 105 (129)
|+.|+|+|. .+|+.|+|+|+++... +. .....|+.|+|.|.++ |+.|.|.
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~ 65 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGS 65 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCc
Confidence 789999999 5899999999987643 22 5688999999999996 9999885
No 5
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=1.5e-08 Score=87.34 Aligned_cols=58 Identities=31% Similarity=0.716 Sum_probs=49.6
Q ss_pred ccccccCCCCCCcCe------eeCCCCCCCceEEecc--CC-ceeeeCccccccceee---CCCCcccee
Q 032984 50 VEVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ--NN-RIYRRCPTCRAVGYVL---CSKCKVFKC 107 (129)
Q Consensus 50 ~~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~--g~-~~~~rC~~CnG~Glv~---Cp~C~G~~~ 107 (129)
......|+.|+|+|. ++|+.|+|+|.+.... +. .....|++|+|+|.++ |++|.|.+.
T Consensus 139 ~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~ 208 (371)
T COG0484 139 VTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCKGKGR 208 (371)
T ss_pred cceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECCCCCCCCCCCCe
Confidence 456789999999977 6899999999987655 43 5688999999999997 999999874
No 6
>PRK14279 chaperone protein DnaJ; Provisional
Probab=98.38 E-value=5e-07 Score=77.46 Aligned_cols=57 Identities=28% Similarity=0.677 Sum_probs=47.9
Q ss_pred cccccCCCCCCcCe------eeCCCCCCCceEEeccCC-ceeeeCccccccceee---CCCCcccee
Q 032984 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFKC 107 (129)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~g~-~~~~rC~~CnG~Glv~---Cp~C~G~~~ 107 (129)
.....|..|+|+|. .+|+.|+|+|+++...+. .....|+.|+|.|.++ |+.|.|.+.
T Consensus 171 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~ 237 (392)
T PRK14279 171 TSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIEDPCEECKGTGV 237 (392)
T ss_pred eccccCCCCccccccCCCCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeCCcCCCCCCCeE
Confidence 45689999999997 579999999998765543 4578999999999987 999998763
No 7
>PRK14286 chaperone protein DnaJ; Provisional
Probab=98.34 E-value=6e-07 Score=76.41 Aligned_cols=57 Identities=33% Similarity=0.660 Sum_probs=47.8
Q ss_pred cccccCCCCCCcCe------eeCCCCCCCceEEeccCC-ceeeeCccccccceee---CCCCcccee
Q 032984 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFKC 107 (129)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~g~-~~~~rC~~CnG~Glv~---Cp~C~G~~~ 107 (129)
.....|..|+|+|. ..|+.|+|+|.++...|. +...+|+.|+|.|.++ |+.|.|.+.
T Consensus 148 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 214 (372)
T PRK14286 148 PRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVISNPCKTCGGQGL 214 (372)
T ss_pred eccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEecccCCCCCCCcE
Confidence 45678999999997 589999999998765443 4577999999999986 999999774
No 8
>PRK14285 chaperone protein DnaJ; Provisional
Probab=98.32 E-value=6.8e-07 Score=75.93 Aligned_cols=57 Identities=30% Similarity=0.749 Sum_probs=47.4
Q ss_pred cccccCCCCCCcCe------eeCCCCCCCceEEeccCC-ceeeeCccccccceee---CCCCcccee
Q 032984 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFKC 107 (129)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~g~-~~~~rC~~CnG~Glv~---Cp~C~G~~~ 107 (129)
.....|..|+|+|. ..|..|+|+|+++...|. +...+|+.|+|+|.++ |+.|.|.+.
T Consensus 144 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 210 (365)
T PRK14285 144 TRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGS 210 (365)
T ss_pred eecccCCCCCCcccCCCCCCccCCCccCceeEEecCceeEEeeecCCCCCcccccCCCCCCCCCCCE
Confidence 35678999999996 579999999998764433 4578999999999986 999998773
No 9
>PRK14300 chaperone protein DnaJ; Provisional
Probab=98.31 E-value=9e-07 Score=75.27 Aligned_cols=57 Identities=28% Similarity=0.708 Sum_probs=47.3
Q ss_pred cccccCCCCCCcCe------eeCCCCCCCceEEeccCC-ceeeeCccccccceee---CCCCcccee
Q 032984 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFKC 107 (129)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~g~-~~~~rC~~CnG~Glv~---Cp~C~G~~~ 107 (129)
.....|..|.|+|. ..|+.|+|+|+++...|. .....|+.|+|+|.++ |+.|.|.+.
T Consensus 143 ~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 209 (372)
T PRK14300 143 SSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIKNPCKKCHGMGR 209 (372)
T ss_pred eeccccCCCCCcccCCCCCCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeCCCCCCCCCceE
Confidence 35688999999996 579999999998765443 4567999999999986 999998773
No 10
>PRK14301 chaperone protein DnaJ; Provisional
Probab=98.29 E-value=8e-07 Score=75.67 Aligned_cols=56 Identities=36% Similarity=0.806 Sum_probs=47.0
Q ss_pred cccccCCCCCCcCe------eeCCCCCCCceEEeccCC-ceeeeCccccccceee---CCCCccce
Q 032984 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFK 106 (129)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~g~-~~~~rC~~CnG~Glv~---Cp~C~G~~ 106 (129)
.....|..|.|+|. ..|+.|+|+|++....|. +...+|+.|+|.|.++ |+.|.|.+
T Consensus 142 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g 207 (373)
T PRK14301 142 PKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVITHPCPKCKGSG 207 (373)
T ss_pred eecccCCCCCCcccCCCCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecCCCCCCCCCCc
Confidence 45688999999997 579999999998765443 4578999999999986 99999876
No 11
>PRK14284 chaperone protein DnaJ; Provisional
Probab=98.28 E-value=8.8e-07 Score=75.75 Aligned_cols=56 Identities=32% Similarity=0.701 Sum_probs=46.8
Q ss_pred cccccCCCCCCcCe------eeCCCCCCCceEEeccCC-ceeeeCccccccceee---CCCCccce
Q 032984 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFK 106 (129)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~g~-~~~~rC~~CnG~Glv~---Cp~C~G~~ 106 (129)
.....|..|+|+|. ..|+.|+|+|.++...|. .....|+.|+|.|.++ |+.|.|.+
T Consensus 156 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g 221 (391)
T PRK14284 156 SGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVITDPCSVCRGQG 221 (391)
T ss_pred eeeccCCCCcccccCCCCCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccCCcCCCCCCcc
Confidence 45689999999997 579999999998765443 4567999999999886 99999866
No 12
>PRK14298 chaperone protein DnaJ; Provisional
Probab=98.28 E-value=9.4e-07 Score=75.43 Aligned_cols=58 Identities=28% Similarity=0.583 Sum_probs=47.2
Q ss_pred cccccCCCCCCcCe------eeCCCCCCCceEEecc---CC--ceeeeCccccccceee---CCCCccceeE
Q 032984 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ---NN--RIYRRCPTCRAVGYVL---CSKCKVFKCV 108 (129)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~---g~--~~~~rC~~CnG~Glv~---Cp~C~G~~~v 108 (129)
.....|..|+|+|. ..|+.|+|+|+++... ++ +....|+.|+|.|.++ |+.|.|.+.+
T Consensus 139 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 210 (377)
T PRK14298 139 PRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKV 210 (377)
T ss_pred EeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEE
Confidence 45688999999997 5799999999986542 11 4578999999999886 9999987743
No 13
>PRK10767 chaperone protein DnaJ; Provisional
Probab=98.27 E-value=1.2e-06 Score=74.21 Aligned_cols=57 Identities=28% Similarity=0.670 Sum_probs=47.2
Q ss_pred cccccCCCCCCcCe------eeCCCCCCCceEEeccCC-ceeeeCccccccceee---CCCCcccee
Q 032984 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFKC 107 (129)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~g~-~~~~rC~~CnG~Glv~---Cp~C~G~~~ 107 (129)
.....|..|.|+|. ..|+.|+|+|+++...|. ....+|+.|+|.|.++ |+.|.|.+.
T Consensus 140 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 206 (371)
T PRK10767 140 PTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIKDPCKKCHGQGR 206 (371)
T ss_pred eecccCCCCCCcccCCCCCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECCCCCCCCCCCce
Confidence 45688999999996 479999999998765443 4567999999999985 999998773
No 14
>PRK14295 chaperone protein DnaJ; Provisional
Probab=98.26 E-value=1.2e-06 Score=75.09 Aligned_cols=56 Identities=27% Similarity=0.667 Sum_probs=47.2
Q ss_pred cccccCCCCCCcCe------eeCCCCCCCceEEeccCC-ceeeeCccccccceee---CCCCccce
Q 032984 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFK 106 (129)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~g~-~~~~rC~~CnG~Glv~---Cp~C~G~~ 106 (129)
.....|..|.|+|. ..|+.|+|+|+++...+. ....+|+.|+|.|.++ |+.|.|.+
T Consensus 164 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g 229 (389)
T PRK14295 164 TSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIADDPCLVCKGSG 229 (389)
T ss_pred eccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEeccCCCCCCCCc
Confidence 45678999999997 579999999998765443 4578999999999987 99999876
No 15
>PRK14288 chaperone protein DnaJ; Provisional
Probab=98.25 E-value=1.4e-06 Score=74.12 Aligned_cols=56 Identities=30% Similarity=0.684 Sum_probs=46.4
Q ss_pred cccccCCCCCCcCe-----eeCCCCCCCceEEeccCC-ceeeeCccccccceee---CCCCccce
Q 032984 51 EVGIMCESCNGKGW-----LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFK 106 (129)
Q Consensus 51 ~~~~~C~~C~G~G~-----v~C~~C~GSG~v~~~~g~-~~~~rC~~CnG~Glv~---Cp~C~G~~ 106 (129)
.....|..|+|+|. ..|+.|+|+|.++...|. .....|+.|+|.|.++ |+.|.|.+
T Consensus 138 ~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g 202 (369)
T PRK14288 138 QYQSVCESCDGTGAKDKALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIKTPCQACKGKT 202 (369)
T ss_pred EeeccCCCCCCcccCCCCCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEccccCccCCCcc
Confidence 34569999999996 579999999998765443 4567999999999886 99999875
No 16
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=7.9e-07 Score=76.42 Aligned_cols=62 Identities=29% Similarity=0.631 Sum_probs=49.6
Q ss_pred cccCCCCCCcCeeeCCCCCCCceEEec-----------------c---------CCceeeeCccccccceeeCCCCccce
Q 032984 53 GIMCESCNGKGWLVCDFCGGQKTNVKA-----------------Q---------NNRIYRRCPTCRAVGYVLCSKCKVFK 106 (129)
Q Consensus 53 ~~~C~~C~G~G~v~C~~C~GSG~v~~~-----------------~---------g~~~~~rC~~CnG~Glv~Cp~C~G~~ 106 (129)
-..|..|.|.|.++|+.|+|+|...-. + ++++..+|++|.|.|++.|.+|+|.+
T Consensus 187 v~~ch~c~gRG~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~~C~tC~grG~k~C~TC~gtg 266 (406)
T KOG2813|consen 187 VTFCHACLGRGAMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIKECHTCKGRGKKPCTTCSGTG 266 (406)
T ss_pred hhhhhcccCCCceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcccCCcccCCCCcccccccCcc
Confidence 367999999999999999999942100 0 23567899999999999999999887
Q ss_pred --------eEeecCCc
Q 032984 107 --------CVTFPNYD 114 (129)
Q Consensus 107 --------~v~~~n~~ 114 (129)
.|-|-|+.
T Consensus 267 sll~~t~~vV~wKn~~ 282 (406)
T KOG2813|consen 267 SLLNYTRIVVYWKNEK 282 (406)
T ss_pred ceeeeEEEEEEeechh
Confidence 67788876
No 17
>PRK14294 chaperone protein DnaJ; Provisional
Probab=98.23 E-value=1.6e-06 Score=73.54 Aligned_cols=57 Identities=33% Similarity=0.747 Sum_probs=47.2
Q ss_pred cccccCCCCCCcCe------eeCCCCCCCceEEeccCC-ceeeeCccccccceee---CCCCcccee
Q 032984 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFKC 107 (129)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~g~-~~~~rC~~CnG~Glv~---Cp~C~G~~~ 107 (129)
.....|..|.|+|. .+|+.|+|+|.++...|. +...+|+.|+|.|.++ |+.|.|.+.
T Consensus 142 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 208 (366)
T PRK14294 142 QKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIVSPCKTCHGQGR 208 (366)
T ss_pred eecccCCCCCCccccCCCCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecCcCCCCCCCceE
Confidence 35678999999997 479999999998754443 4578999999999986 999998763
No 18
>PRK14278 chaperone protein DnaJ; Provisional
Probab=98.22 E-value=1.7e-06 Score=73.76 Aligned_cols=57 Identities=39% Similarity=0.898 Sum_probs=46.2
Q ss_pred cccccCCCCCCcCe------eeCCCCCCCceEEecc----CC-ceeeeCccccccceee---CCCCcccee
Q 032984 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKC 107 (129)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~----g~-~~~~rC~~CnG~Glv~---Cp~C~G~~~ 107 (129)
.....|..|+|+|. ..|+.|+|+|+++... |. .....|+.|+|.|.++ |+.|.|.+.
T Consensus 137 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 207 (378)
T PRK14278 137 DTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGR 207 (378)
T ss_pred EeeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCcee
Confidence 45678999999996 5799999999976543 21 3467999999999986 999999763
No 19
>PRK14296 chaperone protein DnaJ; Provisional
Probab=98.22 E-value=1.4e-06 Score=74.29 Aligned_cols=56 Identities=23% Similarity=0.617 Sum_probs=45.8
Q ss_pred cccccCCCCCCcCe------eeCCCCCCCceEEecc--CC---ceeeeCccccccceee---CCCCccce
Q 032984 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ--NN---RIYRRCPTCRAVGYVL---CSKCKVFK 106 (129)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~--g~---~~~~rC~~CnG~Glv~---Cp~C~G~~ 106 (129)
.....|..|+|+|. ..|+.|+|+|.++... +. +...+|+.|+|.|.++ |+.|.|.+
T Consensus 147 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g 216 (372)
T PRK14296 147 DLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKG 216 (372)
T ss_pred eeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCce
Confidence 35678999999997 4799999999976543 21 3457999999999987 99999876
No 20
>PRK14282 chaperone protein DnaJ; Provisional
Probab=98.21 E-value=2.1e-06 Score=72.82 Aligned_cols=56 Identities=23% Similarity=0.527 Sum_probs=45.9
Q ss_pred cccccCCCCCCcCe------eeCCCCCCCceEEecc----CC-ceeeeCccccccceee---CCCCccce
Q 032984 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFK 106 (129)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~----g~-~~~~rC~~CnG~Glv~---Cp~C~G~~ 106 (129)
.....|..|.|+|. ..|+.|+|+|+++... |. .....|+.|+|.|.++ |+.|.|.+
T Consensus 150 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g 219 (369)
T PRK14282 150 DRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSG 219 (369)
T ss_pred eecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCce
Confidence 45678999999996 5799999999986542 22 3467999999999986 99999876
No 21
>PRK14291 chaperone protein DnaJ; Provisional
Probab=98.18 E-value=2.2e-06 Score=73.18 Aligned_cols=56 Identities=38% Similarity=0.786 Sum_probs=46.3
Q ss_pred cccccCCCCCCcCe------eeCCCCCCCceEEeccCC-ceeeeCccccccceee--CCCCccce
Q 032984 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL--CSKCKVFK 106 (129)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~g~-~~~~rC~~CnG~Glv~--Cp~C~G~~ 106 (129)
.....|..|+|+|. ..|+.|+|+|+++...+. .....|+.|+|.|.+. |+.|.|.+
T Consensus 154 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~C~~C~G~g 218 (382)
T PRK14291 154 PRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVLREPCSKCNGRG 218 (382)
T ss_pred eeeccCCCCccccCCCCCCCccCCCCCCceEEEEecceEEEEecCCCCCCceEEccCCCCCCCCc
Confidence 45688999999996 579999999998765432 4578999999999764 99999866
No 22
>PRK14276 chaperone protein DnaJ; Provisional
Probab=98.15 E-value=2.8e-06 Score=72.46 Aligned_cols=57 Identities=25% Similarity=0.571 Sum_probs=46.2
Q ss_pred cccccCCCCCCcCe------eeCCCCCCCceEEecc----CC-ceeeeCccccccceee---CCCCcccee
Q 032984 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKC 107 (129)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~----g~-~~~~rC~~CnG~Glv~---Cp~C~G~~~ 107 (129)
.....|..|+|+|. ..|+.|+|+|.+.... |. ....+|+.|+|.|.++ |+.|.|.+.
T Consensus 144 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 214 (380)
T PRK14276 144 NREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGH 214 (380)
T ss_pred eccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceE
Confidence 45678999999997 5799999999976542 21 3467999999999986 999998763
No 23
>PRK14280 chaperone protein DnaJ; Provisional
Probab=98.13 E-value=3.4e-06 Score=71.86 Aligned_cols=57 Identities=26% Similarity=0.634 Sum_probs=46.1
Q ss_pred cccccCCCCCCcCe------eeCCCCCCCceEEecc----CC-ceeeeCccccccceee---CCCCcccee
Q 032984 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKC 107 (129)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~----g~-~~~~rC~~CnG~Glv~---Cp~C~G~~~ 107 (129)
.....|..|+|+|. ..|+.|+|+|++.... |. .....|+.|+|.|.++ |+.|.|.+.
T Consensus 141 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 211 (376)
T PRK14280 141 PKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGK 211 (376)
T ss_pred eeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceE
Confidence 35678999999996 5799999999876542 11 3467999999999986 999999773
No 24
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=98.12 E-value=3.6e-06 Score=70.72 Aligned_cols=56 Identities=34% Similarity=0.719 Sum_probs=46.0
Q ss_pred cccccCCCCCCcCe------eeCCCCCCCceEEeccC----C-ceeeeCccccccceee---CCCCccce
Q 032984 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQN----N-RIYRRCPTCRAVGYVL---CSKCKVFK 106 (129)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~g----~-~~~~rC~~CnG~Glv~---Cp~C~G~~ 106 (129)
.....|..|.|+|. ..|..|+|+|.++...+ . ....+|+.|+|.|.++ |+.|.|.+
T Consensus 141 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g 210 (354)
T TIGR02349 141 PRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKG 210 (354)
T ss_pred ecCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCc
Confidence 45689999999995 57999999999875432 1 3467999999999986 99999876
No 25
>PRK14289 chaperone protein DnaJ; Provisional
Probab=98.10 E-value=3.4e-06 Score=71.89 Aligned_cols=56 Identities=29% Similarity=0.689 Sum_probs=46.4
Q ss_pred cccccCCCCCCcCe------eeCCCCCCCceEEecc----CC-ceeeeCccccccceee---CCCCccce
Q 032984 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFK 106 (129)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~----g~-~~~~rC~~CnG~Glv~---Cp~C~G~~ 106 (129)
.....|..|.|+|. ..|+.|+|+|+++... |. .....|+.|+|.|.++ |+.|.|.+
T Consensus 152 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g 221 (386)
T PRK14289 152 KKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEG 221 (386)
T ss_pred EeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCc
Confidence 45689999999997 5799999999987543 22 3578999999999886 99999876
No 26
>PRK14277 chaperone protein DnaJ; Provisional
Probab=98.10 E-value=4e-06 Score=71.66 Aligned_cols=58 Identities=28% Similarity=0.607 Sum_probs=46.6
Q ss_pred cccccCCCCCCcCe------eeCCCCCCCceEEecc----CC-ceeeeCccccccceee---CCCCccceeE
Q 032984 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKCV 108 (129)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~----g~-~~~~rC~~CnG~Glv~---Cp~C~G~~~v 108 (129)
.....|..|.|+|. ..|+.|+|+|+++... |. ....+|+.|+|.|.++ |+.|.|.+.|
T Consensus 153 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 224 (386)
T PRK14277 153 ERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRI 224 (386)
T ss_pred EeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEE
Confidence 35678999999996 5799999999876543 22 3457999999999987 9999997743
No 27
>PRK14287 chaperone protein DnaJ; Provisional
Probab=98.07 E-value=4.7e-06 Score=70.96 Aligned_cols=58 Identities=28% Similarity=0.589 Sum_probs=46.1
Q ss_pred cccccCCCCCCcCe------eeCCCCCCCceEEecc----CC-ceeeeCccccccceee---CCCCccceeE
Q 032984 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKCV 108 (129)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~----g~-~~~~rC~~CnG~Glv~---Cp~C~G~~~v 108 (129)
.....|..|+|+|. ..|+.|+|+|++.... |. .....|+.|+|.|.++ |+.|.|.+.+
T Consensus 136 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 207 (371)
T PRK14287 136 PREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKV 207 (371)
T ss_pred eeeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEE
Confidence 35678999999996 5799999999876543 21 3467999999999986 9999986643
No 28
>PRK14281 chaperone protein DnaJ; Provisional
Probab=98.06 E-value=5e-06 Score=71.37 Aligned_cols=57 Identities=30% Similarity=0.619 Sum_probs=45.9
Q ss_pred cccccCCCCCCcCe-----eeCCCCCCCceEEecc----CC-ceeeeCccccccceee---CCCCcccee
Q 032984 51 EVGIMCESCNGKGW-----LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKC 107 (129)
Q Consensus 51 ~~~~~C~~C~G~G~-----v~C~~C~GSG~v~~~~----g~-~~~~rC~~CnG~Glv~---Cp~C~G~~~ 107 (129)
.....|..|.|+|. ..|..|+|+|.++... |. ....+|+.|+|.|.++ |+.|.|.+.
T Consensus 161 ~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 230 (397)
T PRK14281 161 KKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGI 230 (397)
T ss_pred EeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCcc
Confidence 35678999999997 4799999999976543 21 3467999999999986 999998763
No 29
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=98.05 E-value=5.5e-06 Score=72.10 Aligned_cols=56 Identities=25% Similarity=0.759 Sum_probs=45.1
Q ss_pred cccccCCCCCCcCe-----eeCCCCCCCceEEecc--CC---ceeeeCccccccceee-----CCCCccce
Q 032984 51 EVGIMCESCNGKGW-----LVCDFCGGQKTNVKAQ--NN---RIYRRCPTCRAVGYVL-----CSKCKVFK 106 (129)
Q Consensus 51 ~~~~~C~~C~G~G~-----v~C~~C~GSG~v~~~~--g~---~~~~rC~~CnG~Glv~-----Cp~C~G~~ 106 (129)
.....|..|+|+|. .+|+.|+|+|.++... +. ....+|+.|+|.|.++ |+.|.|.+
T Consensus 148 ~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g 218 (421)
T PTZ00037 148 NKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKG 218 (421)
T ss_pred eccccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCCCcc
Confidence 35678999999997 4799999999865432 21 3467999999999974 99999876
No 30
>PRK14290 chaperone protein DnaJ; Provisional
Probab=98.04 E-value=7.5e-06 Score=69.44 Aligned_cols=57 Identities=25% Similarity=0.596 Sum_probs=45.7
Q ss_pred cccccCCCCCCcCe-----eeCCCCCCCceEEecc--CC---ceeeeCccccccceee---CCCCcccee
Q 032984 51 EVGIMCESCNGKGW-----LVCDFCGGQKTNVKAQ--NN---RIYRRCPTCRAVGYVL---CSKCKVFKC 107 (129)
Q Consensus 51 ~~~~~C~~C~G~G~-----v~C~~C~GSG~v~~~~--g~---~~~~rC~~CnG~Glv~---Cp~C~G~~~ 107 (129)
.....|..|.|+|. ..|+.|+|+|+++... |. ....+|+.|+|.|.+. |+.|.|.+.
T Consensus 147 ~r~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 216 (365)
T PRK14290 147 RRNAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGT 216 (365)
T ss_pred eecccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCCCCCCCCcee
Confidence 35678999999997 5799999999876543 21 2347999999999886 999998763
No 31
>PRK14297 chaperone protein DnaJ; Provisional
Probab=98.02 E-value=7.1e-06 Score=69.93 Aligned_cols=56 Identities=32% Similarity=0.661 Sum_probs=45.8
Q ss_pred cccccCCCCCCcCe------eeCCCCCCCceEEecc----CC-ceeeeCccccccceee---CCCCccce
Q 032984 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFK 106 (129)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~----g~-~~~~rC~~CnG~Glv~---Cp~C~G~~ 106 (129)
.....|..|.|+|. .+|+.|+|+|++.... |. ....+|+.|+|.|.++ |+.|.|.+
T Consensus 146 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g 215 (380)
T PRK14297 146 TRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKG 215 (380)
T ss_pred eeeccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCe
Confidence 45678999999996 5799999999876432 21 3578999999999986 99999976
No 32
>PRK14293 chaperone protein DnaJ; Provisional
Probab=97.95 E-value=1.1e-05 Score=68.65 Aligned_cols=56 Identities=32% Similarity=0.708 Sum_probs=45.3
Q ss_pred cccccCCCCCCcCe------eeCCCCCCCceEEecc----CC-ceeeeCccccccceee---CCCCccce
Q 032984 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFK 106 (129)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~----g~-~~~~rC~~CnG~Glv~---Cp~C~G~~ 106 (129)
.....|..|.|+|. ..|+.|+|+|+++... |. ....+|..|+|.|.++ |+.|.|.+
T Consensus 141 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g 210 (374)
T PRK14293 141 PHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQG 210 (374)
T ss_pred eccccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCc
Confidence 45678999999987 4799999999876532 22 3467999999999985 99999866
No 33
>PRK14283 chaperone protein DnaJ; Provisional
Probab=97.91 E-value=1.3e-05 Score=68.18 Aligned_cols=57 Identities=26% Similarity=0.612 Sum_probs=45.8
Q ss_pred cccccCCCCCCcCe------eeCCCCCCCceEEecc----CC-ceeeeCccccccceee---CCCCcccee
Q 032984 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKC 107 (129)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~----g~-~~~~rC~~CnG~Glv~---Cp~C~G~~~ 107 (129)
.....|..|.|+|. ..|+.|+|+|++.... |. ....+|..|+|.|.++ |..|.|.+.
T Consensus 144 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 214 (378)
T PRK14283 144 RHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGV 214 (378)
T ss_pred eeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCcee
Confidence 35678999999886 4799999999987543 21 3467999999999984 999998763
No 34
>PRK14292 chaperone protein DnaJ; Provisional
Probab=97.81 E-value=2.6e-05 Score=66.12 Aligned_cols=57 Identities=26% Similarity=0.592 Sum_probs=45.1
Q ss_pred cccccCCCCCCcCe-------eeCCCCCCCceEEecc----CC-ceeeeCccccccceee---CCCCcccee
Q 032984 51 EVGIMCESCNGKGW-------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKC 107 (129)
Q Consensus 51 ~~~~~C~~C~G~G~-------v~C~~C~GSG~v~~~~----g~-~~~~rC~~CnG~Glv~---Cp~C~G~~~ 107 (129)
.....|..|.|+|. ..|..|+|+|+++... |. ....+|..|+|.|.++ |+.|.|.+.
T Consensus 137 ~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 208 (371)
T PRK14292 137 DRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGR 208 (371)
T ss_pred EeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceE
Confidence 34578999999985 5799999999876432 21 3457999999999986 999998763
No 35
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=97.68 E-value=4e-05 Score=50.67 Aligned_cols=38 Identities=34% Similarity=0.802 Sum_probs=28.5
Q ss_pred ccccCCCCCCcCe---------------eeCCCCCCCceEEeccCCceeeeCccccccc
Q 032984 52 VGIMCESCNGKGW---------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVG 95 (129)
Q Consensus 52 ~~~~C~~C~G~G~---------------v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~G 95 (129)
....|..|+|+|+ .+|+.|+|+|+++ . ..+|+.|+|.|
T Consensus 14 ~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~-----~~~C~~C~G~g 66 (66)
T PF00684_consen 14 KPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-E-----KDPCKTCKGSG 66 (66)
T ss_dssp T-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--T-----SSB-SSSTTSS
T ss_pred CCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-C-----CCCCCCCCCcC
Confidence 5678999999998 4799999999987 2 35999999986
No 36
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.00022 Score=61.84 Aligned_cols=40 Identities=30% Similarity=0.682 Sum_probs=34.9
Q ss_pred ccccCCCCCCcCe-------------eeCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984 52 VGIMCESCNGKGW-------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (129)
Q Consensus 52 ~~~~C~~C~G~G~-------------v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~ 98 (129)
....|..|+|+|. .+|+.|+|+|+++ ..+|++|+|.|.+.
T Consensus 158 ~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i-------~~pC~~C~G~G~v~ 210 (371)
T COG0484 158 DPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKII-------KDPCGKCKGKGRVK 210 (371)
T ss_pred CCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeEC-------CCCCCCCCCCCeEe
Confidence 5679999999995 4799999999987 45999999999964
No 37
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.27 E-value=0.00023 Score=65.37 Aligned_cols=53 Identities=30% Similarity=0.682 Sum_probs=33.9
Q ss_pred ccCCCCCCcCee-----eCCCCCCCceEEecc--C-------C-----ceeeeCccccccceee----CCCCccce
Q 032984 54 IMCESCNGKGWL-----VCDFCGGQKTNVKAQ--N-------N-----RIYRRCPTCRAVGYVL----CSKCKVFK 106 (129)
Q Consensus 54 ~~C~~C~G~G~v-----~C~~C~GSG~v~~~~--g-------~-----~~~~rC~~CnG~Glv~----Cp~C~G~~ 106 (129)
..|..|+|+|++ .|+.|+|+|++.+-+ + . ..-.+|+.|.|.|.+. |+.|.|.+
T Consensus 3 ~~C~~C~g~G~i~v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~g 78 (715)
T COG1107 3 KKCPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTG 78 (715)
T ss_pred ccccccCCCceEeeeeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCce
Confidence 468999999983 699999999863211 0 0 1124666666666654 66666554
No 38
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.00026 Score=60.77 Aligned_cols=55 Identities=24% Similarity=0.614 Sum_probs=46.1
Q ss_pred ccccCCCCCCcCee-----eCCCCCCCceEEecc--C----CceeeeCcccccccee-----eCCCCccce
Q 032984 52 VGIMCESCNGKGWL-----VCDFCGGQKTNVKAQ--N----NRIYRRCPTCRAVGYV-----LCSKCKVFK 106 (129)
Q Consensus 52 ~~~~C~~C~G~G~v-----~C~~C~GSG~v~~~~--g----~~~~~rC~~CnG~Glv-----~Cp~C~G~~ 106 (129)
....|+.|.|.|.. .|..|.|+|..+... + .+....|..|+|.|.. +|+.|.|.+
T Consensus 126 ~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~ 196 (337)
T KOG0712|consen 126 RNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAK 196 (337)
T ss_pred cCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccccch
Confidence 67899999999993 599999999866532 2 2568899999999998 799999876
No 39
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.02 E-value=0.00072 Score=62.18 Aligned_cols=53 Identities=34% Similarity=0.795 Sum_probs=42.1
Q ss_pred ccccCCCCCCcCe------------------------eeCCCCCCCceEEeccCCceeeeCccccccceee-CCCCccce
Q 032984 52 VGIMCESCNGKGW------------------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL-CSKCKVFK 106 (129)
Q Consensus 52 ~~~~C~~C~G~G~------------------------v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~-Cp~C~G~~ 106 (129)
....|.-|+|+|+ ++|+.|+|.|.+. ++..|+.|+|+|.+. |..| |..
T Consensus 17 ~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~------v~~~c~~c~G~gkv~~c~~c-G~~ 89 (715)
T COG1107 17 GEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVT------VYDTCPECGGTGKVLTCDIC-GDI 89 (715)
T ss_pred eeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEE------EEeecccCCCceeEEeeccc-cce
Confidence 5567999999997 5899999999986 378999999999986 8888 434
Q ss_pred eEeec
Q 032984 107 CVTFP 111 (129)
Q Consensus 107 ~v~~~ 111 (129)
.+.|+
T Consensus 90 ~~~~~ 94 (715)
T COG1107 90 IVPWE 94 (715)
T ss_pred ecCcc
Confidence 44443
No 40
>PRK14296 chaperone protein DnaJ; Provisional
Probab=96.98 E-value=0.00066 Score=58.03 Aligned_cols=39 Identities=28% Similarity=0.812 Sum_probs=33.2
Q ss_pred cccCCCCCCcCee---------------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984 53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (129)
Q Consensus 53 ~~~C~~C~G~G~v---------------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~ 98 (129)
...|..|+|+|.+ +|+.|+|+|++. ..+|+.|+|.|.+.
T Consensus 166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~ 219 (372)
T PRK14296 166 IHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKII-------KNKCKNCKGKGKYL 219 (372)
T ss_pred CccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceee-------cccccCCCCceEEE
Confidence 4679999999974 799999999986 35799999999763
No 41
>PRK14298 chaperone protein DnaJ; Provisional
Probab=96.86 E-value=0.00082 Score=57.54 Aligned_cols=39 Identities=31% Similarity=0.786 Sum_probs=33.2
Q ss_pred cccCCCCCCcCee---------------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984 53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (129)
Q Consensus 53 ~~~C~~C~G~G~v---------------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~ 98 (129)
...|..|+|+|.+ +|+.|+|+|+++ ..+|+.|+|.|.+.
T Consensus 158 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~ 211 (377)
T PRK14298 158 PKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVI-------ESPCPVCSGTGKVR 211 (377)
T ss_pred CCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCccc-------CCCCCCCCCccEEE
Confidence 4679999999963 699999999975 35799999999874
No 42
>PRK14300 chaperone protein DnaJ; Provisional
Probab=96.85 E-value=0.00091 Score=57.04 Aligned_cols=40 Identities=25% Similarity=0.665 Sum_probs=32.4
Q ss_pred ccccCCCCCCcCee-----------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984 52 VGIMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (129)
Q Consensus 52 ~~~~C~~C~G~G~v-----------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~ 98 (129)
....|..|+|+|.+ +|+.|+|.|++. ..+|+.|+|.|.+.
T Consensus 161 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~ 211 (372)
T PRK14300 161 TVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII-------KNPCKKCHGMGRYH 211 (372)
T ss_pred CCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe-------CCCCCCCCCceEEE
Confidence 34679999999874 599999999876 35799999999863
No 43
>PRK14285 chaperone protein DnaJ; Provisional
Probab=96.83 E-value=0.00098 Score=56.78 Aligned_cols=39 Identities=28% Similarity=0.750 Sum_probs=31.7
Q ss_pred cccCCCCCCcCee-----------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984 53 GIMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (129)
Q Consensus 53 ~~~C~~C~G~G~v-----------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~ 98 (129)
...|..|+|+|.+ +|+.|+|.|++. ..+|..|+|.|.+.
T Consensus 163 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~ 212 (365)
T PRK14285 163 PSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKII-------SNPCKSCKGKGSLK 212 (365)
T ss_pred CccCCCccCceeEEecCceeEEeeecCCCCCccccc-------CCCCCCCCCCCEEe
Confidence 4679999999863 799999999875 34799999999764
No 44
>PRK14288 chaperone protein DnaJ; Provisional
Probab=96.82 E-value=0.0012 Score=56.41 Aligned_cols=39 Identities=31% Similarity=0.829 Sum_probs=30.4
Q ss_pred cccCCCCCCcCee-----------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984 53 GIMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (129)
Q Consensus 53 ~~~C~~C~G~G~v-----------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~ 98 (129)
...|..|+|+|.+ +|+.|+|+|++. ..+|+.|+|.|.+.
T Consensus 156 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~ 205 (369)
T PRK14288 156 LETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII-------KTPCQACKGKTYIL 205 (369)
T ss_pred CcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc-------cccCccCCCcceEE
Confidence 4678999998864 599999998875 34689999888763
No 45
>PRK14286 chaperone protein DnaJ; Provisional
Probab=96.81 E-value=0.001 Score=56.82 Aligned_cols=39 Identities=31% Similarity=0.737 Sum_probs=30.8
Q ss_pred cccCCCCCCcCee-----------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984 53 GIMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (129)
Q Consensus 53 ~~~C~~C~G~G~v-----------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~ 98 (129)
...|..|+|+|.+ +|+.|+|+|++. ..+|+.|+|.|.+.
T Consensus 167 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~~~ 216 (372)
T PRK14286 167 PTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVI-------SNPCKTCGGQGLQE 216 (372)
T ss_pred CccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEe-------cccCCCCCCCcEEe
Confidence 3679999998864 699999998875 34799999988875
No 46
>PRK14279 chaperone protein DnaJ; Provisional
Probab=96.81 E-value=0.001 Score=57.21 Aligned_cols=40 Identities=28% Similarity=0.726 Sum_probs=31.8
Q ss_pred ccccCCCCCCcCee-----------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984 52 VGIMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (129)
Q Consensus 52 ~~~~C~~C~G~G~v-----------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~ 98 (129)
....|..|+|+|.+ +|+.|+|+|+++ ..+|..|+|.|.+.
T Consensus 189 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i-------~~~C~~C~G~g~v~ 239 (392)
T PRK14279 189 SPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSII-------EDPCEECKGTGVTT 239 (392)
T ss_pred CCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEe-------CCcCCCCCCCeEEE
Confidence 34679999999873 699999999875 34799999988874
No 47
>PRK10767 chaperone protein DnaJ; Provisional
Probab=96.80 E-value=0.001 Score=56.50 Aligned_cols=39 Identities=28% Similarity=0.710 Sum_probs=32.1
Q ss_pred cccCCCCCCcCee-----------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984 53 GIMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (129)
Q Consensus 53 ~~~C~~C~G~G~v-----------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~ 98 (129)
...|..|+|+|.+ +|+.|+|.|++. ..+|+.|+|.|.+.
T Consensus 159 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~ 208 (371)
T PRK10767 159 PKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKII-------KDPCKKCHGQGRVE 208 (371)
T ss_pred CccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeEC-------CCCCCCCCCCceEe
Confidence 4579999999875 499999999875 35799999999874
No 48
>PRK14280 chaperone protein DnaJ; Provisional
Probab=96.78 E-value=0.0012 Score=56.36 Aligned_cols=39 Identities=33% Similarity=0.877 Sum_probs=33.0
Q ss_pred cccCCCCCCcCee---------------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984 53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (129)
Q Consensus 53 ~~~C~~C~G~G~v---------------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~ 98 (129)
...|..|+|+|.+ +|+.|+|+|++. ..+|+.|+|.|.+.
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~ 213 (376)
T PRK14280 160 KETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI-------KEKCPTCHGKGKVR 213 (376)
T ss_pred CccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCcee-------cCCCCCCCCceEEE
Confidence 5679999999863 699999999976 35799999999874
No 49
>PRK14282 chaperone protein DnaJ; Provisional
Probab=96.75 E-value=0.0013 Score=55.95 Aligned_cols=40 Identities=28% Similarity=0.702 Sum_probs=33.4
Q ss_pred ccccCCCCCCcCee---------------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984 52 VGIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (129)
Q Consensus 52 ~~~~C~~C~G~G~v---------------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~ 98 (129)
....|..|+|+|.+ +|+.|+|+|++. ..+|..|+|.|.+.
T Consensus 168 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~ 222 (369)
T PRK14282 168 GYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIP-------GEYCHECGGSGRIR 222 (369)
T ss_pred CCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeC-------CCCCCCCCCceeEE
Confidence 34689999999974 699999999975 35799999999764
No 50
>PRK14278 chaperone protein DnaJ; Provisional
Probab=96.73 E-value=0.0013 Score=56.37 Aligned_cols=39 Identities=28% Similarity=0.688 Sum_probs=32.9
Q ss_pred cccCCCCCCcCe---------------eeCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984 53 GIMCESCNGKGW---------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (129)
Q Consensus 53 ~~~C~~C~G~G~---------------v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~ 98 (129)
...|..|+|+|. .+|+.|+|.|+++ ..+|+.|+|.|.+.
T Consensus 156 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~ 209 (378)
T PRK14278 156 PVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVI-------PDPCHECAGDGRVR 209 (378)
T ss_pred ceecCCccCceEEEEEEeccceeEEEEEECCCCCccceee-------CCCCCCCCCceeEe
Confidence 467999999986 3699999999986 34799999999863
No 51
>PRK14284 chaperone protein DnaJ; Provisional
Probab=96.72 E-value=0.0011 Score=56.90 Aligned_cols=39 Identities=31% Similarity=0.780 Sum_probs=32.0
Q ss_pred ccccCCCCCCcCe-----------eeCCCCCCCceEEeccCCceeeeCcccccccee
Q 032984 52 VGIMCESCNGKGW-----------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYV 97 (129)
Q Consensus 52 ~~~~C~~C~G~G~-----------v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv 97 (129)
....|..|+|+|. .+|+.|+|.|+++ ..+|+.|+|.|.+
T Consensus 174 ~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v 223 (391)
T PRK14284 174 GIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVI-------TDPCSVCRGQGRI 223 (391)
T ss_pred CCeecCccCCeeEEEEEeceEEEEEECCCCCCCCccc-------CCcCCCCCCccee
Confidence 3567999999987 4799999999875 3479999999986
No 52
>PRK14301 chaperone protein DnaJ; Provisional
Probab=96.70 E-value=0.0012 Score=56.42 Aligned_cols=39 Identities=31% Similarity=0.829 Sum_probs=31.3
Q ss_pred cccCCCCCCcCee-----------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984 53 GIMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (129)
Q Consensus 53 ~~~C~~C~G~G~v-----------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~ 98 (129)
...|..|+|+|.+ +|+.|+|+|++. ..+|+.|+|.|.+.
T Consensus 161 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~ 210 (373)
T PRK14301 161 PETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVI-------THPCPKCKGSGIVQ 210 (373)
T ss_pred CcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeec-------CCCCCCCCCCceec
Confidence 4679999999863 699999999875 34799999999864
No 53
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=96.64 E-value=0.0017 Score=56.65 Aligned_cols=42 Identities=29% Similarity=0.708 Sum_probs=34.6
Q ss_pred ccccCCCCCCcCe---------------eeCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984 52 VGIMCESCNGKGW---------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (129)
Q Consensus 52 ~~~~C~~C~G~G~---------------v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~ 98 (129)
....|..|+|+|. .+|+.|+|+|+++.. ..+|..|+|.|.+.
T Consensus 165 ~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~-----~~~C~~C~G~g~v~ 221 (421)
T PTZ00037 165 AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPE-----SKKCKNCSGKGVKK 221 (421)
T ss_pred CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccc-----cccCCcCCCcceee
Confidence 3568999999994 379999999998742 35899999999875
No 54
>PRK14276 chaperone protein DnaJ; Provisional
Probab=96.64 E-value=0.0014 Score=56.03 Aligned_cols=39 Identities=31% Similarity=0.838 Sum_probs=32.9
Q ss_pred cccCCCCCCcCee---------------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984 53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (129)
Q Consensus 53 ~~~C~~C~G~G~v---------------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~ 98 (129)
...|..|+|+|.+ +|+.|+|+|+++ ..+|+.|+|.|.+.
T Consensus 163 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~~~ 216 (380)
T PRK14276 163 PVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEI-------KEPCQTCHGTGHEK 216 (380)
T ss_pred CccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccc-------cCCCCCCCCceEEE
Confidence 4689999999863 699999999976 35799999999864
No 55
>PRK14297 chaperone protein DnaJ; Provisional
Probab=96.56 E-value=0.0019 Score=55.17 Aligned_cols=39 Identities=33% Similarity=0.824 Sum_probs=32.8
Q ss_pred cccCCCCCCcCee---------------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984 53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (129)
Q Consensus 53 ~~~C~~C~G~G~v---------------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~ 98 (129)
...|..|+|+|.+ +|+.|+|.|++. ..+|..|+|.|.+.
T Consensus 165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~ 218 (380)
T PRK14297 165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVI-------EDPCNKCHGKGKVR 218 (380)
T ss_pred CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEc-------CCCCCCCCCCeEEE
Confidence 5679999999864 699999999976 35799999999653
No 56
>PRK14290 chaperone protein DnaJ; Provisional
Probab=96.54 E-value=0.0023 Score=54.42 Aligned_cols=40 Identities=35% Similarity=0.855 Sum_probs=33.7
Q ss_pred ccccCCCCCCcCe---------------eeCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984 52 VGIMCESCNGKGW---------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (129)
Q Consensus 52 ~~~~C~~C~G~G~---------------v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~ 98 (129)
....|..|+|.|. .+|+.|+|.|++. ..+|+.|+|.|.+.
T Consensus 164 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~ 218 (365)
T PRK14290 164 KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP-------EEKCPRCNGTGTVV 218 (365)
T ss_pred CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc-------cCCCCCCCCceeEE
Confidence 3568999999995 3799999999974 45899999999964
No 57
>PRK14294 chaperone protein DnaJ; Provisional
Probab=96.53 E-value=0.002 Score=54.77 Aligned_cols=39 Identities=31% Similarity=0.723 Sum_probs=32.0
Q ss_pred cccCCCCCCcCee-----------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984 53 GIMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (129)
Q Consensus 53 ~~~C~~C~G~G~v-----------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~ 98 (129)
...|..|+|.|.+ +|+.|+|+|++. ..+|..|+|.|.+.
T Consensus 161 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~ 210 (366)
T PRK14294 161 PTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVI-------VSPCKTCHGQGRVR 210 (366)
T ss_pred cccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeec-------CcCCCCCCCceEee
Confidence 4679999999863 699999999875 35799999999864
No 58
>PRK14289 chaperone protein DnaJ; Provisional
Probab=96.52 E-value=0.002 Score=55.12 Aligned_cols=40 Identities=28% Similarity=0.760 Sum_probs=33.5
Q ss_pred ccccCCCCCCcCee---------------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984 52 VGIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (129)
Q Consensus 52 ~~~~C~~C~G~G~v---------------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~ 98 (129)
....|..|+|+|.+ +|+.|+|.|++. ..+|..|+|.|.+.
T Consensus 170 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~ 224 (386)
T PRK14289 170 GSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII-------KKKCKKCGGEGIVY 224 (386)
T ss_pred CCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc-------CcCCCCCCCCcEEe
Confidence 45789999999884 699999999875 35799999999864
No 59
>PRK14277 chaperone protein DnaJ; Provisional
Probab=96.52 E-value=0.0021 Score=55.12 Aligned_cols=39 Identities=28% Similarity=0.778 Sum_probs=33.1
Q ss_pred cccCCCCCCcCee---------------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984 53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (129)
Q Consensus 53 ~~~C~~C~G~G~v---------------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~ 98 (129)
...|..|+|.|.+ +|+.|+|+|++. ..+|..|+|.|.+.
T Consensus 172 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~ 225 (386)
T PRK14277 172 PVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKII-------TDPCNKCGGTGRIR 225 (386)
T ss_pred CccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeec-------cCCCCCCCCCcEEe
Confidence 4689999999863 699999999986 34799999999873
No 60
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=96.51 E-value=0.0023 Score=53.86 Aligned_cols=39 Identities=33% Similarity=0.806 Sum_probs=33.2
Q ss_pred cccCCCCCCcCe---------------eeCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984 53 GIMCESCNGKGW---------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (129)
Q Consensus 53 ~~~C~~C~G~G~---------------v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~ 98 (129)
...|..|+|+|. .+|+.|+|+|++. ...|..|+|.|.+.
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~ 213 (354)
T TIGR02349 160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKII-------KEPCSTCKGKGRVK 213 (354)
T ss_pred CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceec-------CCCCCCCCCCcEec
Confidence 578999999986 3699999999976 34799999999874
No 61
>PRK14295 chaperone protein DnaJ; Provisional
Probab=96.49 E-value=0.0023 Score=55.01 Aligned_cols=39 Identities=26% Similarity=0.598 Sum_probs=31.0
Q ss_pred cccCCCCCCcCe-----------eeCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984 53 GIMCESCNGKGW-----------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (129)
Q Consensus 53 ~~~C~~C~G~G~-----------v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~ 98 (129)
...|..|+|+|. .+|+.|+|+|++. ..+|..|+|.|.+.
T Consensus 183 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~~~ 232 (389)
T PRK14295 183 PRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIA-------DDPCLVCKGSGRAK 232 (389)
T ss_pred CcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEe-------ccCCCCCCCCceEe
Confidence 467999999886 3799999998875 34799999988764
No 62
>PRK14281 chaperone protein DnaJ; Provisional
Probab=96.48 E-value=0.0025 Score=54.90 Aligned_cols=40 Identities=35% Similarity=0.830 Sum_probs=33.8
Q ss_pred ccccCCCCCCcCee---------------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984 52 VGIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (129)
Q Consensus 52 ~~~~C~~C~G~G~v---------------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~ 98 (129)
....|..|+|.|.+ +|+.|+|+|++. ..+|+.|+|.|.+.
T Consensus 178 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~ 232 (397)
T PRK14281 178 ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVV-------KDRCPACYGEGIKQ 232 (397)
T ss_pred CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeee-------CCCCCCCCCCccEe
Confidence 45689999999963 599999999986 34799999999974
No 63
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=96.45 E-value=0.0043 Score=45.75 Aligned_cols=37 Identities=30% Similarity=0.628 Sum_probs=29.0
Q ss_pred ccccCCCCCCcCe------------eeCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984 52 VGIMCESCNGKGW------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (129)
Q Consensus 52 ~~~~C~~C~G~G~------------v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~ 98 (129)
....|..|+|+|+ ..|+.|+|+|++ .|..|.|.|.+.
T Consensus 51 G~~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~----------~C~~C~G~G~~~ 99 (111)
T PLN03165 51 GAQVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL----------TCTTCQGSGIQP 99 (111)
T ss_pred CCcCCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee----------eCCCCCCCEEEe
Confidence 3358999999877 268888888863 499999999864
No 64
>PRK14293 chaperone protein DnaJ; Provisional
Probab=96.27 E-value=0.0034 Score=53.53 Aligned_cols=39 Identities=26% Similarity=0.670 Sum_probs=32.7
Q ss_pred cccCCCCCCcCee---------------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984 53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (129)
Q Consensus 53 ~~~C~~C~G~G~v---------------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~ 98 (129)
...|..|+|+|.+ +|+.|+|.|++. ..+|..|+|.|.+.
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~ 213 (374)
T PRK14293 160 PTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVI-------EDPCDACGGQGVKQ 213 (374)
T ss_pred CeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEe-------ccCCCCCCCCcccc
Confidence 4679999999973 599999999975 34799999999863
No 65
>PRK14287 chaperone protein DnaJ; Provisional
Probab=96.16 E-value=0.0042 Score=53.08 Aligned_cols=39 Identities=33% Similarity=0.770 Sum_probs=33.1
Q ss_pred cccCCCCCCcCe---------------eeCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984 53 GIMCESCNGKGW---------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (129)
Q Consensus 53 ~~~C~~C~G~G~---------------v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~ 98 (129)
...|..|+|+|. .+|+.|+|+|++. ..+|..|+|.|.+.
T Consensus 155 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~ 208 (371)
T PRK14287 155 PETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKII-------KQKCATCGGKGKVR 208 (371)
T ss_pred CcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccc-------cccCCCCCCeeEEe
Confidence 467999999986 3699999999975 35799999999875
No 66
>PRK14292 chaperone protein DnaJ; Provisional
Probab=96.13 E-value=0.0047 Score=52.48 Aligned_cols=39 Identities=31% Similarity=0.750 Sum_probs=32.9
Q ss_pred cccCCCCCCcCee---------------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984 53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (129)
Q Consensus 53 ~~~C~~C~G~G~v---------------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~ 98 (129)
...|..|+|+|.+ +|..|+|.|+.. ..+|+.|+|.|.+.
T Consensus 157 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~ 210 (371)
T PRK14292 157 PKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII-------TDPCTVCRGRGRTL 210 (371)
T ss_pred CccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec-------CCCCCCCCCceEEe
Confidence 5779999999974 599999999875 35899999999764
No 67
>PRK14283 chaperone protein DnaJ; Provisional
Probab=96.05 E-value=0.0058 Score=52.20 Aligned_cols=40 Identities=30% Similarity=0.689 Sum_probs=33.2
Q ss_pred ccccCCCCCCcCee---------------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984 52 VGIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (129)
Q Consensus 52 ~~~~C~~C~G~G~v---------------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~ 98 (129)
....|..|.|.|.+ +|+.|+|+|+.. ..+|..|+|.|.+.
T Consensus 162 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~ 216 (378)
T PRK14283 162 EVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIV-------EKPCSNCHGKGVVR 216 (378)
T ss_pred CCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceec-------CCCCCCCCCceeec
Confidence 35679999999884 599999999875 35799999999863
No 68
>PRK14291 chaperone protein DnaJ; Provisional
Probab=96.04 E-value=0.0066 Score=51.96 Aligned_cols=38 Identities=32% Similarity=0.865 Sum_probs=29.2
Q ss_pred cccCCCCCCcCee-----------eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984 53 GIMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (129)
Q Consensus 53 ~~~C~~C~G~G~v-----------~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~ 98 (129)
...|..|+|+|.+ +|..|+|+|.+ ...|..|+|.|.+.
T Consensus 173 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~--------~~~C~~C~G~g~v~ 221 (382)
T PRK14291 173 EKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL--------REPCSKCNGRGLVI 221 (382)
T ss_pred CccCCCCCCceEEEEecceEEEEecCCCCCCceEE--------ccCCCCCCCCceEE
Confidence 5679999998863 69999998853 24799999988763
No 69
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=96.00 E-value=0.0046 Score=49.15 Aligned_cols=25 Identities=32% Similarity=0.803 Sum_probs=16.4
Q ss_pred cccCCCCCCcCee-----eCCCCCCCceEE
Q 032984 53 GIMCESCNGKGWL-----VCDFCGGQKTNV 77 (129)
Q Consensus 53 ~~~C~~C~G~G~v-----~C~~C~GSG~v~ 77 (129)
...|+.|+|+|++ +|+.|+|+|++.
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~ 128 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFR 128 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEEe
Confidence 4567777777764 277777777654
No 70
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.0063 Score=52.82 Aligned_cols=37 Identities=32% Similarity=0.839 Sum_probs=27.7
Q ss_pred ccccCCCCCCcCeeeCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984 52 VGIMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (129)
Q Consensus 52 ~~~~C~~C~G~G~v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~ 98 (129)
....|..|+|+|...|+.|+|.|+ .+|.+|.|+|.+.
T Consensus 233 t~~~C~~C~G~G~~~C~tC~grG~----------k~C~TC~gtgsll 269 (406)
T KOG2813|consen 233 THDLCYMCHGRGIKECHTCKGRGK----------KPCTTCSGTGSLL 269 (406)
T ss_pred ccchhhhccCCCcccCCcccCCCC----------cccccccCcccee
Confidence 446677777777777777777765 4888899888765
No 71
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=95.35 E-value=0.013 Score=46.68 Aligned_cols=30 Identities=27% Similarity=0.494 Sum_probs=25.0
Q ss_pred eeeCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984 64 WLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (129)
Q Consensus 64 ~v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~ 98 (129)
..+|+.|+|+|++... ..+|+.|+|.|.+.
T Consensus 99 ~~~C~~C~G~G~~i~~-----~~~C~~C~G~G~v~ 128 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRR-----QRECDTCAGTGRFR 128 (186)
T ss_pred CCcCCCCCCeeEEecC-----CCCCCCCCCccEEe
Confidence 4689999999998742 25899999999975
No 72
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.46 E-value=0.16 Score=43.88 Aligned_cols=42 Identities=36% Similarity=0.780 Sum_probs=33.6
Q ss_pred ccccCCCCCCcCe----------------eeCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984 52 VGIMCESCNGKGW----------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (129)
Q Consensus 52 ~~~~C~~C~G~G~----------------v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~ 98 (129)
....|..|.|+|. ++|..|+|+|..+.. ..+|+.|+|.+.+.
T Consensus 142 ~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~-----kd~C~~C~G~~~v~ 199 (337)
T KOG0712|consen 142 SAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISL-----KDRCKTCSGAKVVR 199 (337)
T ss_pred CCCCCCCCCCCCceeEEEeccccccccceeEeccCCCccccccc-----cccCcccccchhhh
Confidence 3457999999998 579999999886422 56999999999874
No 73
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.89 E-value=0.3 Score=46.80 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=14.2
Q ss_pred eCCCCccce------eEeecCCcchHHHHHHh
Q 032984 98 LCSKCKVFK------CVTFPNYDDANALLELT 123 (129)
Q Consensus 98 ~Cp~C~G~~------~v~~~n~~D~~~l~~~~ 123 (129)
.|+.|.|.+ .|+|.+ ....|++++|
T Consensus 761 ~C~~C~G~R~~~e~l~v~~~g-~~i~dvl~~t 791 (924)
T TIGR00630 761 PCEVCKGKRYNRETLEVKYKG-KNIADVLDMT 791 (924)
T ss_pred CCCCcCCceeChHHHhceeCC-CCHHHHhCCc
Confidence 366666555 677754 4555555444
No 74
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=88.33 E-value=0.14 Score=42.80 Aligned_cols=56 Identities=29% Similarity=0.601 Sum_probs=42.0
Q ss_pred cccccCCCCCCcCe------eeCCCCCCCceEEeccCCceee-eCccccccceee---CCCCccce
Q 032984 51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNNRIYR-RCPTCRAVGYVL---CSKCKVFK 106 (129)
Q Consensus 51 ~~~~~C~~C~G~G~------v~C~~C~GSG~v~~~~g~~~~~-rC~~CnG~Glv~---Cp~C~G~~ 106 (129)
.....|..|.|.|. ..|..|+|.|.+....-..... .|..|++.|.+. |..|.|-.
T Consensus 162 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~~~c~~~~g~~ 227 (288)
T KOG0715|consen 162 NVLSDCETCFGSGAEEGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVLRDNCQACSGAG 227 (288)
T ss_pred EeecccccccCcCcccccccccchhhhCcccccccccCCcceeecccccccceeccchHHHhhcch
Confidence 35568999999998 4799999999765432111122 699999999997 77888766
No 75
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=83.51 E-value=0.73 Score=47.30 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=9.2
Q ss_pred eEeecCCcchHHHHHHh
Q 032984 107 CVTFPNYDDANALLELT 123 (129)
Q Consensus 107 ~v~~~n~~D~~~l~~~~ 123 (129)
.|+|. ...+.|++++|
T Consensus 1647 ~v~~~-gk~I~dvL~mt 1662 (1809)
T PRK00635 1647 EVVYE-GKHFGQLLQTP 1662 (1809)
T ss_pred hheeC-CCCHHHHhcCC
Confidence 56665 34566666554
No 76
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=82.52 E-value=0.7 Score=38.27 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=24.2
Q ss_pred ccccCCCCCCcCeeeCCCCCCCceEEec
Q 032984 52 VGIMCESCNGKGWLVCDFCGGQKTNVKA 79 (129)
Q Consensus 52 ~~~~C~~C~G~G~v~C~~C~GSG~v~~~ 79 (129)
...++.+-.|.+.++|+.|+|+|++-+.
T Consensus 26 ~~~py~e~~g~~~vtCPTCqGtGrIP~e 53 (238)
T PF07092_consen 26 SSFPYVEFTGRDSVTCPTCQGTGRIPRE 53 (238)
T ss_pred ccCccccccCCCCCcCCCCcCCccCCcc
Confidence 4577888999999999999999998654
No 77
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=81.47 E-value=1.2 Score=42.90 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=11.4
Q ss_pred CCCCccce------eEeecCCcchHHHH
Q 032984 99 CSKCKVFK------CVTFPNYDDANALL 120 (129)
Q Consensus 99 Cp~C~G~~------~v~~~n~~D~~~l~ 120 (129)
|+.|.|.+ .|+|.+. ...|++
T Consensus 764 C~~C~G~R~~~e~l~v~~~g~-~i~dvl 790 (943)
T PRK00349 764 CDVCKGKRYNRETLEVKYKGK-NIADVL 790 (943)
T ss_pred CccccCccccccceEEEECCC-CHHHHh
Confidence 55555554 6777654 344443
No 78
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=79.79 E-value=1.3 Score=26.28 Aligned_cols=29 Identities=21% Similarity=0.481 Sum_probs=18.7
Q ss_pred eeCCCCCCCceEEecc--CCceeeeCccccc
Q 032984 65 LVCDFCGGQKTNVKAQ--NNRIYRRCPTCRA 93 (129)
Q Consensus 65 v~C~~C~GSG~v~~~~--g~~~~~rC~~CnG 93 (129)
+.|+.|+..-++.... ......+|+.|+.
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~ 33 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGH 33 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCc
Confidence 6799999887765432 2233677777753
No 79
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=78.52 E-value=3.2 Score=35.45 Aligned_cols=16 Identities=19% Similarity=0.692 Sum_probs=9.9
Q ss_pred CCCCccceeEeecCCc
Q 032984 99 CSKCKVFKCVTFPNYD 114 (129)
Q Consensus 99 Cp~C~G~~~v~~~n~~ 114 (129)
|..|++|--+.+++.|
T Consensus 255 C~~C~~YlK~~~~~~d 270 (309)
T PRK03564 255 CGDCGTYLKILYQEKD 270 (309)
T ss_pred cccccccceecccccC
Confidence 7777776655555443
No 80
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=76.90 E-value=2 Score=25.62 Aligned_cols=19 Identities=26% Similarity=0.562 Sum_probs=14.5
Q ss_pred CCCCccceeEeecCCcchHHHHH
Q 032984 99 CSKCKVFKCVTFPNYDDANALLE 121 (129)
Q Consensus 99 Cp~C~G~~~v~~~n~~D~~~l~~ 121 (129)
|+.|.| .|.+.++.+.|.+
T Consensus 22 C~~C~G----~W~d~~el~~~~e 40 (41)
T PF13453_consen 22 CPSCGG----IWFDAGELEKLLE 40 (41)
T ss_pred CCCCCe----EEccHHHHHHHHh
Confidence 888887 6888887777653
No 81
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=75.92 E-value=3.9 Score=25.69 Aligned_cols=14 Identities=36% Similarity=0.999 Sum_probs=10.3
Q ss_pred eeCCCCCCCceEEe
Q 032984 65 LVCDFCGGQKTNVK 78 (129)
Q Consensus 65 v~C~~C~GSG~v~~ 78 (129)
++|+.|+|..+.+.
T Consensus 2 kPCPfCGg~~~~~~ 15 (53)
T TIGR03655 2 KPCPFCGGADVYLR 15 (53)
T ss_pred CCCCCCCCcceeeE
Confidence 47999999877443
No 82
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=75.58 E-value=3.1 Score=26.22 Aligned_cols=13 Identities=31% Similarity=0.751 Sum_probs=9.1
Q ss_pred eeCCCCCCCceEEe
Q 032984 65 LVCDFCGGQKTNVK 78 (129)
Q Consensus 65 v~C~~C~GSG~v~~ 78 (129)
.+|++| |+..+..
T Consensus 4 kPCPFC-G~~~~~~ 16 (61)
T PF14354_consen 4 KPCPFC-GSADVLI 16 (61)
T ss_pred cCCCCC-CCcceEe
Confidence 479999 7766543
No 83
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=75.27 E-value=2.2 Score=41.14 Aligned_cols=31 Identities=23% Similarity=0.622 Sum_probs=15.0
Q ss_pred CCCCCCCceEEeccC--CceeeeCcccccccee
Q 032984 67 CDFCGGQKTNVKAQN--NRIYRRCPTCRAVGYV 97 (129)
Q Consensus 67 C~~C~GSG~v~~~~g--~~~~~rC~~CnG~Glv 97 (129)
|+.|.|.|.+....+ ...+..|+.|+|..+.
T Consensus 739 C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~ 771 (924)
T TIGR00630 739 CEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYN 771 (924)
T ss_pred CCCCccceEEEEEccCCCCcccCCCCcCCceeC
Confidence 444444444433221 1245667777766553
No 84
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=74.98 E-value=3.1 Score=34.17 Aligned_cols=56 Identities=25% Similarity=0.571 Sum_probs=26.4
Q ss_pred ccccCCCCCC--------------cCeeeCCCCCCCceEEeccCCceeeeCcccccccee----------------eCCC
Q 032984 52 VGIMCESCNG--------------KGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYV----------------LCSK 101 (129)
Q Consensus 52 ~~~~C~~C~G--------------~G~v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv----------------~Cp~ 101 (129)
....|.-|++ .++..|..|+-.=+.. +..|+.|+..... .|..
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~-------R~~Cp~Cg~~~~~~l~~~~~e~~~~~rve~C~~ 243 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV-------RIKCPYCGNTDHEKLEYFTVEGEPAYRVEVCES 243 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEEEETTT--EEE---------TTS-TTT---SS-EEE--------SEEEEEETT
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeec-------CCCCcCCCCCCCcceeeEecCCCCcEEEEECCc
Confidence 4466777763 3556777776543322 3467777654332 3999
Q ss_pred CccceeEeecCCc
Q 032984 102 CKVFKCVTFPNYD 114 (129)
Q Consensus 102 C~G~~~v~~~n~~ 114 (129)
|++|--+.+.+.|
T Consensus 244 C~~YlK~vd~~~~ 256 (290)
T PF04216_consen 244 CGSYLKTVDREKD 256 (290)
T ss_dssp TTEEEEEEETTT-
T ss_pred ccchHHHHhhhhC
Confidence 9887665554443
No 85
>PRK04023 DNA polymerase II large subunit; Validated
Probab=74.21 E-value=4.1 Score=40.15 Aligned_cols=49 Identities=29% Similarity=0.546 Sum_probs=35.8
Q ss_pred cccccccCCCCCCcCe-eeCCCCCCCceEEeccCCceeeeCccccccce-eeCCCCccce
Q 032984 49 EVEVGIMCESCNGKGW-LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGY-VLCSKCKVFK 106 (129)
Q Consensus 49 ~~~~~~~C~~C~G~G~-v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Gl-v~Cp~C~G~~ 106 (129)
.+.....|..|+-..+ ..|+.|+.... ...+|+.|.-.+. -.||.| |+.
T Consensus 622 VEVg~RfCpsCG~~t~~frCP~CG~~Te--------~i~fCP~CG~~~~~y~CPKC-G~E 672 (1121)
T PRK04023 622 VEIGRRKCPSCGKETFYRRCPFCGTHTE--------PVYRCPRCGIEVEEDECEKC-GRE 672 (1121)
T ss_pred ecccCccCCCCCCcCCcccCCCCCCCCC--------cceeCccccCcCCCCcCCCC-CCC
Confidence 4556789999998876 47999988722 2469999976554 359999 444
No 86
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=70.37 E-value=4 Score=41.02 Aligned_cols=60 Identities=23% Similarity=0.552 Sum_probs=38.7
Q ss_pred ccccCCCCCCcCe-eeCCCCCCCceEEeccCCceeeeCcccccc------ceeeCCCCccceeEeecCCc-chHHHH
Q 032984 52 VGIMCESCNGKGW-LVCDFCGGQKTNVKAQNNRIYRRCPTCRAV------GYVLCSKCKVFKCVTFPNYD-DANALL 120 (129)
Q Consensus 52 ~~~~C~~C~G~G~-v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~------Glv~Cp~C~G~~~v~~~n~~-D~~~l~ 120 (129)
....|..|+...+ ..|+.|+..-.. ...|+.|+.. +...||.|. ...+.+...+ |..++.
T Consensus 666 ~~rkCPkCG~~t~~~fCP~CGs~te~--------vy~CPsCGaev~~des~a~~CP~CG-tplv~~~~~~i~~~~~~ 733 (1337)
T PRK14714 666 GRRRCPSCGTETYENRCPDCGTHTEP--------VYVCPDCGAEVPPDESGRVECPRCD-VELTPYQRRTINVKEEY 733 (1337)
T ss_pred EEEECCCCCCccccccCcccCCcCCC--------ceeCccCCCccCCCccccccCCCCC-CcccccceEEecHHHHH
Confidence 3478999998665 479999887432 2389999873 344799994 4444444322 444444
No 87
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=69.23 E-value=4.5 Score=30.74 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=21.3
Q ss_pred eeCccccccceeeCCCCccceeEeecC
Q 032984 86 RRCPTCRAVGYVLCSKCKVFKCVTFPN 112 (129)
Q Consensus 86 ~rC~~CnG~Glv~Cp~C~G~~~v~~~n 112 (129)
..|..|.|.+++.|..|.|.+-+-..+
T Consensus 100 ~~C~~Cgg~rfv~C~~C~Gs~k~~~~~ 126 (147)
T cd03031 100 GVCEGCGGARFVPCSECNGSCKVFAEN 126 (147)
T ss_pred CCCCCCCCcCeEECCCCCCcceEEecc
Confidence 469999999999999999977554444
No 88
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=68.55 E-value=3.5 Score=39.85 Aligned_cols=14 Identities=29% Similarity=0.866 Sum_probs=8.3
Q ss_pred eeeeCcccccccee
Q 032984 84 IYRRCPTCRAVGYV 97 (129)
Q Consensus 84 ~~~rC~~CnG~Glv 97 (129)
.+..|+.|+|..+.
T Consensus 760 ~~~~C~~C~G~R~~ 773 (943)
T PRK00349 760 VYVPCDVCKGKRYN 773 (943)
T ss_pred ccccCccccCcccc
Confidence 35566666666553
No 89
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=67.56 E-value=3.7 Score=39.83 Aligned_cols=29 Identities=21% Similarity=0.540 Sum_probs=13.3
Q ss_pred eCCCCCCCceEEeccCC--ceeeeCcccccc
Q 032984 66 VCDFCGGQKTNVKAQNN--RIYRRCPTCRAV 94 (129)
Q Consensus 66 ~C~~C~GSG~v~~~~g~--~~~~rC~~CnG~ 94 (129)
.|..|.|.|.+....+. .++.+|..|+|.
T Consensus 732 RCe~C~GdG~ikIeM~FLpdVyv~CevC~Gk 762 (935)
T COG0178 732 RCEACQGDGVIKIEMHFLPDVYVPCEVCHGK 762 (935)
T ss_pred CCccccCCceEEEEeccCCCceeeCCCcCCc
Confidence 35555555554433321 344555555443
No 90
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=66.08 E-value=5 Score=34.10 Aligned_cols=26 Identities=23% Similarity=0.485 Sum_probs=22.8
Q ss_pred eeCccccccceeeCCCCccceeEeec
Q 032984 86 RRCPTCRAVGYVLCSKCKVFKCVTFP 111 (129)
Q Consensus 86 ~rC~~CnG~Glv~Cp~C~G~~~v~~~ 111 (129)
..|..|.|.+.++|..|.|.+-|.++
T Consensus 230 ~~C~~CGg~rFlpC~~C~GS~kv~~~ 255 (281)
T KOG2824|consen 230 GVCESCGGARFLPCSNCHGSCKVHEE 255 (281)
T ss_pred CcCCCcCCcceEecCCCCCceeeeee
Confidence 57999999999999999998866664
No 91
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=64.97 E-value=2.8 Score=33.10 Aligned_cols=50 Identities=30% Similarity=0.715 Sum_probs=32.3
Q ss_pred ccccCCCCCCcCeeeCCCCCCCceEEeccCCceeeeCccccccce------eeCCCCc
Q 032984 52 VGIMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGY------VLCSKCK 103 (129)
Q Consensus 52 ~~~~C~~C~G~G~v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Gl------v~Cp~C~ 103 (129)
.-..|+-|.++|+ .|..|+.+..+. .=......+|+.|+.-=- ..||.|.
T Consensus 141 HV~~C~lC~~kGf-iCe~C~~~~~If-PF~~~~~~~C~~C~~v~H~~C~~~~~CpkC~ 196 (202)
T PF13901_consen 141 HVYSCELCQQKGF-ICEICNSDDIIF-PFQIDTTVRCPKCKSVFHKSCFRKKSCPKCA 196 (202)
T ss_pred HHHHhHHHHhCCC-CCccCCCCCCCC-CCCCCCeeeCCcCccccchhhcCCCCCCCcH
Confidence 4458999999998 899999884443 111124678887764211 3477774
No 92
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=63.19 E-value=3.3 Score=29.47 Aligned_cols=41 Identities=20% Similarity=0.594 Sum_probs=28.2
Q ss_pred eCCCCCCCceEEec-----c-CCceeeeCccccccceeeCCCCccce
Q 032984 66 VCDFCGGQKTNVKA-----Q-NNRIYRRCPTCRAVGYVLCSKCKVFK 106 (129)
Q Consensus 66 ~C~~C~GSG~v~~~-----~-g~~~~~rC~~CnG~Glv~Cp~C~G~~ 106 (129)
.|..|+|.|.++.. . |......|..|.|+|.-+=+.=..+.
T Consensus 7 ~c~~c~g~g~al~~~~s~~~~G~pvfk~c~rcgg~G~sr~~~~~a~~ 53 (95)
T PF03589_consen 7 SCRRCAGDGAALDMKQSKAQFGVPVFKDCERCGGRGYSRLPSSRAIE 53 (95)
T ss_pred CcCccCCcceeccHHHhHhccCCchhhhhhhhcCCCCCCCChHHHHH
Confidence 57788888876542 2 44678899999999987655444433
No 93
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=62.36 E-value=5.3 Score=23.56 Aligned_cols=29 Identities=17% Similarity=0.414 Sum_probs=17.8
Q ss_pred eeCCCCCCCceEEecc--CCceeeeCccccc
Q 032984 65 LVCDFCGGQKTNVKAQ--NNRIYRRCPTCRA 93 (129)
Q Consensus 65 v~C~~C~GSG~v~~~~--g~~~~~rC~~CnG 93 (129)
+.|+.|+-.-.+-+.. ......+|+.|+.
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~ 33 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGH 33 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCC
Confidence 6788898775554321 2234677877764
No 94
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=62.02 E-value=6.6 Score=38.16 Aligned_cols=22 Identities=36% Similarity=1.008 Sum_probs=14.5
Q ss_pred ccCCCCCCcCe------------eeCCCCCCCce
Q 032984 54 IMCESCNGKGW------------LVCDFCGGQKT 75 (129)
Q Consensus 54 ~~C~~C~G~G~------------v~C~~C~GSG~ 75 (129)
..|+.|+|-|+ ++|..|+|...
T Consensus 731 GRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRY 764 (935)
T COG0178 731 GRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRY 764 (935)
T ss_pred cCCccccCCceEEEEeccCCCceeeCCCcCCccc
Confidence 56777777776 46777777654
No 95
>PRK09710 lar restriction alleviation and modification protein; Reviewed
Probab=60.84 E-value=12 Score=25.37 Aligned_cols=30 Identities=30% Similarity=0.635 Sum_probs=17.4
Q ss_pred eeCCCCCCCceEEeccCCceeeeCcccccc
Q 032984 65 LVCDFCGGQKTNVKAQNNRIYRRCPTCRAV 94 (129)
Q Consensus 65 v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~ 94 (129)
.+|++|...-..+...++-.+..|..|+..
T Consensus 7 KPCPFCG~~~~~v~~~~g~~~v~C~~CgA~ 36 (64)
T PRK09710 7 KPCPFCGCPSVTVKAISGYYRAKCNGCESR 36 (64)
T ss_pred cCCCCCCCceeEEEecCceEEEEcCCCCcC
Confidence 578888877655544343334555555553
No 96
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=59.73 E-value=7.6 Score=22.38 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=16.1
Q ss_pred eeCCCCCCCceEEecc--CCceeeeCccccc
Q 032984 65 LVCDFCGGQKTNVKAQ--NNRIYRRCPTCRA 93 (129)
Q Consensus 65 v~C~~C~GSG~v~~~~--g~~~~~rC~~CnG 93 (129)
+.|+.|+-.=++.... ......+|+.|+.
T Consensus 3 ~~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~ 33 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQLGANGGKVRCGKCGH 33 (38)
T ss_pred EECCCCCCEEEeCHHHcCCCCCEEECCCCCC
Confidence 5688888765553221 1122566666654
No 97
>PF14353 CpXC: CpXC protein
Probab=58.05 E-value=12 Score=26.82 Aligned_cols=34 Identities=21% Similarity=0.398 Sum_probs=23.2
Q ss_pred eeCCCCCCCceEEe-----cc-----------CCceeeeCccccccceee
Q 032984 65 LVCDFCGGQKTNVK-----AQ-----------NNRIYRRCPTCRAVGYVL 98 (129)
Q Consensus 65 v~C~~C~GSG~v~~-----~~-----------g~~~~~rC~~CnG~Glv~ 98 (129)
++|+.|+....... .+ |.-....||.|+..+.+.
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~ 51 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLE 51 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecC
Confidence 57999998876421 11 223468899999988763
No 98
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=57.48 E-value=9.1 Score=29.29 Aligned_cols=36 Identities=28% Similarity=0.611 Sum_probs=24.5
Q ss_pred CCcCeeeCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984 60 NGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (129)
Q Consensus 60 ~G~G~v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~ 98 (129)
-|.|..+|..|+-.-.+.. .....+||.|+++.+.+
T Consensus 108 ~g~G~l~C~~Cg~~~~~~~---~~~l~~Cp~C~~~~F~R 143 (146)
T PF07295_consen 108 VGPGTLVCENCGHEVELTH---PERLPPCPKCGHTEFTR 143 (146)
T ss_pred ecCceEecccCCCEEEecC---CCcCCCCCCCCCCeeee
Confidence 4788889999976544432 12356888888877654
No 99
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=55.24 E-value=8.4 Score=39.95 Aligned_cols=11 Identities=36% Similarity=0.903 Sum_probs=6.5
Q ss_pred ccCCCCCCcCe
Q 032984 54 IMCESCNGKGW 64 (129)
Q Consensus 54 ~~C~~C~G~G~ 64 (129)
..|+.|.|.|+
T Consensus 1608 GrC~~C~G~G~ 1618 (1809)
T PRK00635 1608 GQCSDCWGLGY 1618 (1809)
T ss_pred CCCCCCccCce
Confidence 44666666665
No 100
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=55.21 E-value=14 Score=31.44 Aligned_cols=24 Identities=21% Similarity=0.508 Sum_probs=13.6
Q ss_pred ccccCCCCCCcCe---eeCCCCCCCce
Q 032984 52 VGIMCESCNGKGW---LVCDFCGGQKT 75 (129)
Q Consensus 52 ~~~~C~~C~G~G~---v~C~~C~GSG~ 75 (129)
++-.|.-|+-... +.|+.|.-+.+
T Consensus 209 RyL~CslC~teW~~~R~~C~~Cg~~~~ 235 (305)
T TIGR01562 209 RYLSCSLCATEWHYVRVKCSHCEESKH 235 (305)
T ss_pred eEEEcCCCCCcccccCccCCCCCCCCc
Confidence 4455666665554 35666665543
No 101
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=50.72 E-value=6.7 Score=32.81 Aligned_cols=43 Identities=30% Similarity=0.786 Sum_probs=32.7
Q ss_pred cccccccCCCCCCcCe----------e-eCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984 49 EVEVGIMCESCNGKGW----------L-VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (129)
Q Consensus 49 ~~~~~~~C~~C~G~G~----------v-~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~ 98 (129)
.+.....|..|.|.|. + +|..|+|.+.+... .|..|.|.|.+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~~-------~c~~~~g~~~v~ 230 (288)
T KOG0715|consen 177 EGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVLRD-------NCQACSGAGQVR 230 (288)
T ss_pred cccccccchhhhCcccccccccCCcceeecccccccceeccc-------hHHHhhcchhhh
Confidence 3457788999999992 3 49999999987632 388999998654
No 102
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=49.72 E-value=25 Score=33.37 Aligned_cols=48 Identities=27% Similarity=0.589 Sum_probs=35.1
Q ss_pred cccCCCCCCcCee-eCCCCCCCceEEeccCCceeeeCccccccceee--CCCCccce
Q 032984 53 GIMCESCNGKGWL-VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL--CSKCKVFK 106 (129)
Q Consensus 53 ~~~C~~C~G~G~v-~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~--Cp~C~G~~ 106 (129)
...|..| |++ .|++|..+=..... ....+|+.|+-...+. ||.|.+..
T Consensus 435 ~l~C~~C---g~v~~Cp~Cd~~lt~H~~---~~~L~CH~Cg~~~~~p~~Cp~Cgs~~ 485 (730)
T COG1198 435 LLLCRDC---GYIAECPNCDSPLTLHKA---TGQLRCHYCGYQEPIPQSCPECGSEH 485 (730)
T ss_pred eeecccC---CCcccCCCCCcceEEecC---CCeeEeCCCCCCCCCCCCCCCCCCCe
Confidence 3578888 454 69999998444332 2368999999986665 99998763
No 103
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=49.40 E-value=23 Score=21.12 Aligned_cols=9 Identities=33% Similarity=1.007 Sum_probs=6.6
Q ss_pred eCCCCCCCc
Q 032984 66 VCDFCGGQK 74 (129)
Q Consensus 66 ~C~~C~GSG 74 (129)
.|+.|+.+.
T Consensus 2 ~Cp~Cg~~~ 10 (43)
T PF08271_consen 2 KCPNCGSKE 10 (43)
T ss_dssp SBTTTSSSE
T ss_pred CCcCCcCCc
Confidence 578887766
No 104
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=48.91 E-value=25 Score=21.32 Aligned_cols=26 Identities=35% Similarity=0.862 Sum_probs=14.2
Q ss_pred eeCCCCCCCceEEeccCCceeeeCcccc
Q 032984 65 LVCDFCGGQKTNVKAQNNRIYRRCPTCR 92 (129)
Q Consensus 65 v~C~~C~GSG~v~~~~g~~~~~rC~~Cn 92 (129)
++|+.|+.. ++....+ ...-+|..|.
T Consensus 19 ~~CP~Cg~~-~~~~~~~-~~~~~C~~C~ 44 (46)
T PF12760_consen 19 FVCPHCGST-KHYRLKT-RGRYRCKACR 44 (46)
T ss_pred CCCCCCCCe-eeEEeCC-CCeEECCCCC
Confidence 448888887 3332222 2355666664
No 105
>PRK11032 hypothetical protein; Provisional
Probab=47.98 E-value=16 Score=28.59 Aligned_cols=36 Identities=25% Similarity=0.510 Sum_probs=22.8
Q ss_pred CCcCeeeCCCCCCCceEEeccCCceeeeCccccccceee
Q 032984 60 NGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (129)
Q Consensus 60 ~G~G~v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~ 98 (129)
-|.|.++|..|+=.-.+... ....+||.|++..+.+
T Consensus 120 vg~G~LvC~~Cg~~~~~~~p---~~i~pCp~C~~~~F~R 155 (160)
T PRK11032 120 VGLGNLVCEKCHHHLAFYTP---EVLPLCPKCGHDQFQR 155 (160)
T ss_pred eecceEEecCCCCEEEecCC---CcCCCCCCCCCCeeee
Confidence 36777888888755433221 2256788888876644
No 106
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=45.22 E-value=27 Score=26.42 Aligned_cols=31 Identities=23% Similarity=0.563 Sum_probs=16.5
Q ss_pred eeCCCCCCCceEEeccCCceeeeCccccccc
Q 032984 65 LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVG 95 (129)
Q Consensus 65 v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~G 95 (129)
|.|+.|+..-.....++.-....|..|+...
T Consensus 103 VlC~~C~spdT~l~k~~r~~~l~C~ACGa~~ 133 (138)
T PRK03988 103 VICPECGSPDTKLIKEGRIWVLKCEACGAET 133 (138)
T ss_pred EECCCCCCCCcEEEEcCCeEEEEcccCCCCC
Confidence 6677776664433333333455666665543
No 107
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=44.98 E-value=29 Score=26.16 Aligned_cols=32 Identities=19% Similarity=0.481 Sum_probs=16.8
Q ss_pred eeCCCCCCCceEEeccCCceeeeCccccccce
Q 032984 65 LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGY 96 (129)
Q Consensus 65 v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Gl 96 (129)
|.|+.|+..-.....++.....+|..|+...-
T Consensus 98 VlC~~C~sPdT~l~k~~r~~~l~C~ACGa~~~ 129 (133)
T TIGR00311 98 VICRECNRPDTRIIKEGRVSLLKCEACGAKAP 129 (133)
T ss_pred EECCCCCCCCcEEEEeCCeEEEecccCCCCCc
Confidence 67777776644333233323456666655443
No 108
>PF15616 TerY-C: TerY-C metal binding domain
Probab=44.05 E-value=30 Score=26.22 Aligned_cols=17 Identities=35% Similarity=0.964 Sum_probs=14.0
Q ss_pred ccCCCCCCc-CeeeCCCCC
Q 032984 54 IMCESCNGK-GWLVCDFCG 71 (129)
Q Consensus 54 ~~C~~C~G~-G~v~C~~C~ 71 (129)
-.|..|+.. +++.| .|+
T Consensus 78 PgCP~CGn~~~fa~C-~CG 95 (131)
T PF15616_consen 78 PGCPHCGNQYAFAVC-GCG 95 (131)
T ss_pred CCCCCCcChhcEEEe-cCC
Confidence 679999999 88888 563
No 109
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=42.91 E-value=21 Score=21.77 Aligned_cols=29 Identities=24% Similarity=0.493 Sum_probs=13.4
Q ss_pred eeCCCCCCCceEE-ecc-CCceeeeCccccc
Q 032984 65 LVCDFCGGQKTNV-KAQ-NNRIYRRCPTCRA 93 (129)
Q Consensus 65 v~C~~C~GSG~v~-~~~-g~~~~~rC~~CnG 93 (129)
.+|+.|.|+-+.. -.+ ......-|..|++
T Consensus 4 ~pCP~CGG~DrFri~~d~~~~G~~~C~~C~~ 34 (40)
T PF08273_consen 4 GPCPICGGKDRFRIFDDKDGRGTWICRQCGG 34 (40)
T ss_dssp E--TTTT-TTTEEEETT----S-EEETTTTB
T ss_pred CCCCCCcCccccccCcCcccCCCEECCCCCC
Confidence 5799999986543 333 2233456777743
No 110
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=42.32 E-value=33 Score=25.02 Aligned_cols=30 Identities=27% Similarity=0.786 Sum_probs=18.3
Q ss_pred eeeCCCCCCCceEEeccCCceeeeCccccc
Q 032984 64 WLVCDFCGGQKTNVKAQNNRIYRRCPTCRA 93 (129)
Q Consensus 64 ~v~C~~C~GSG~v~~~~g~~~~~rC~~CnG 93 (129)
||.|+.|+..-.....++.....+|..|+.
T Consensus 80 yVlC~~C~spdT~l~k~~r~~~l~C~aCGa 109 (110)
T smart00653 80 YVLCPECGSPDTELIKENRLFFLKCEACGA 109 (110)
T ss_pred cEECCCCCCCCcEEEEeCCeEEEEccccCC
Confidence 477888877755443334444667777754
No 111
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=41.11 E-value=41 Score=19.55 Aligned_cols=11 Identities=36% Similarity=0.863 Sum_probs=4.9
Q ss_pred eCCCCCCCceE
Q 032984 66 VCDFCGGQKTN 76 (129)
Q Consensus 66 ~C~~C~GSG~v 76 (129)
.|..|++.+-+
T Consensus 5 ~C~~C~~~~i~ 15 (33)
T PF08792_consen 5 KCSKCGGNGIV 15 (33)
T ss_pred EcCCCCCCeEE
Confidence 34445444433
No 112
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=40.46 E-value=37 Score=22.36 Aligned_cols=16 Identities=25% Similarity=0.939 Sum_probs=12.4
Q ss_pred cCeeeCCCCCCCceEE
Q 032984 62 KGWLVCDFCGGQKTNV 77 (129)
Q Consensus 62 ~G~v~C~~C~GSG~v~ 77 (129)
..|+.|+.|++..++.
T Consensus 2 ~~Wi~CP~CgnKTR~k 17 (55)
T PF14205_consen 2 SEWILCPICGNKTRLK 17 (55)
T ss_pred CeEEECCCCCCcccee
Confidence 3688999999887654
No 113
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=40.34 E-value=19 Score=27.80 Aligned_cols=10 Identities=50% Similarity=1.062 Sum_probs=6.8
Q ss_pred eCCCCCCCce
Q 032984 66 VCDFCGGQKT 75 (129)
Q Consensus 66 ~C~~C~GSG~ 75 (129)
.|+.|+..|.
T Consensus 2 ~Cp~C~~~~~ 11 (160)
T smart00709 2 DCPSCGGNGT 11 (160)
T ss_pred cCCCCCCCCE
Confidence 4777776665
No 114
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.31 E-value=38 Score=30.27 Aligned_cols=47 Identities=28% Similarity=0.529 Sum_probs=32.9
Q ss_pred ccCCCCCCcCeeeCCCCCCCceEEeccCCceeeeCccccccceee--CCCCccc
Q 032984 54 IMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL--CSKCKVF 105 (129)
Q Consensus 54 ~~C~~C~G~G~v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~--Cp~C~G~ 105 (129)
..|..|+- ...|+.|+++=...... ....|+.|+-.-.+. ||.|.+.
T Consensus 214 ~~C~~Cg~--~~~C~~C~~~l~~h~~~---~~l~Ch~Cg~~~~~~~~Cp~C~s~ 262 (505)
T TIGR00595 214 LLCRSCGY--ILCCPNCDVSLTYHKKE---GKLRCHYCGYQEPIPKTCPQCGSE 262 (505)
T ss_pred eEhhhCcC--ccCCCCCCCceEEecCC---CeEEcCCCcCcCCCCCCCCCCCCC
Confidence 46888853 25799999875444322 267999998776654 9999764
No 115
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=40.08 E-value=12 Score=31.00 Aligned_cols=21 Identities=14% Similarity=0.156 Sum_probs=12.0
Q ss_pred eeCccccccceeeCCCCccce
Q 032984 86 RRCPTCRAVGYVLCSKCKVFK 106 (129)
Q Consensus 86 ~rC~~CnG~Glv~Cp~C~G~~ 106 (129)
.++..-.|.+.+.||+|+|.+
T Consensus 28 ~py~e~~g~~~vtCPTCqGtG 48 (238)
T PF07092_consen 28 FPYVEFTGRDSVTCPTCQGTG 48 (238)
T ss_pred CccccccCCCCCcCCCCcCCc
Confidence 344555555666666666655
No 116
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=39.40 E-value=31 Score=26.48 Aligned_cols=11 Identities=36% Similarity=0.890 Sum_probs=5.9
Q ss_pred eCCCCCCCceE
Q 032984 66 VCDFCGGQKTN 76 (129)
Q Consensus 66 ~C~~C~GSG~v 76 (129)
.|+.|+..|..
T Consensus 3 ~Cp~C~~~~~~ 13 (161)
T PF03367_consen 3 LCPNCGENGTT 13 (161)
T ss_dssp E-TTTSSCCEE
T ss_pred cCCCCCCCcEE
Confidence 46666666643
No 117
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=38.63 E-value=40 Score=26.75 Aligned_cols=32 Identities=25% Similarity=0.573 Sum_probs=13.4
Q ss_pred eeCCCCCCCceEEeccCCceeeeCccccccce
Q 032984 65 LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGY 96 (129)
Q Consensus 65 v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Gl 96 (129)
|.|+.|+..-.....++.....+|..|+..+-
T Consensus 99 V~C~~C~~pdT~l~k~~~~~~l~C~aCGa~~~ 130 (201)
T PRK12336 99 VICSECGLPDTRLVKEDRVLMLRCDACGAHRP 130 (201)
T ss_pred EECCCCCCCCcEEEEcCCeEEEEcccCCCCcc
Confidence 55555555433222222222344555544443
No 118
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []. Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
Probab=38.33 E-value=28 Score=25.87 Aligned_cols=30 Identities=27% Similarity=0.781 Sum_probs=19.1
Q ss_pred eeeCCCCCCCceEEeccCCceeeeCccccc
Q 032984 64 WLVCDFCGGQKTNVKAQNNRIYRRCPTCRA 93 (129)
Q Consensus 64 ~v~C~~C~GSG~v~~~~g~~~~~rC~~CnG 93 (129)
||.|+.|+..-.....++.....+|..|+.
T Consensus 93 yVlC~~C~spdT~l~k~~r~~~l~C~aCGa 122 (125)
T PF01873_consen 93 YVLCPECGSPDTELIKEGRLIFLKCKACGA 122 (125)
T ss_dssp HSSCTSTSSSSEEEEEETTCCEEEETTTSC
T ss_pred EEEcCCCCCCccEEEEcCCEEEEEecccCC
Confidence 477888887765544444445677777764
No 119
>PF13878 zf-C2H2_3: zinc-finger of acetyl-transferase ESCO
Probab=37.97 E-value=26 Score=21.14 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=13.8
Q ss_pred ceeeCCCCccceeEeecCCcchHHHHHH
Q 032984 95 GYVLCSKCKVFKCVTFPNYDDANALLEL 122 (129)
Q Consensus 95 Glv~Cp~C~G~~~v~~~n~~D~~~l~~~ 122 (129)
|.+.|+.|. ++-.++..+-+.||++
T Consensus 12 ~~~~C~~Cg---M~Y~~~~~eD~~~H~~ 36 (41)
T PF13878_consen 12 GATTCPTCG---MLYSPGSPEDEKLHKK 36 (41)
T ss_pred CCcCCCCCC---CEECCCCHHHHHHHHH
Confidence 567888883 3334444444445543
No 120
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=37.72 E-value=21 Score=23.99 Aligned_cols=20 Identities=45% Similarity=1.089 Sum_probs=12.8
Q ss_pred eeeCccccccceee-CCCCccc
Q 032984 85 YRRCPTCRAVGYVL-CSKCKVF 105 (129)
Q Consensus 85 ~~rC~~CnG~Glv~-Cp~C~G~ 105 (129)
..||..|...|..- ||.| ||
T Consensus 38 I~Rc~~CRk~g~~Y~Cp~C-GF 58 (61)
T COG2888 38 IYRCAKCRKLGNPYRCPKC-GF 58 (61)
T ss_pred eehhhhHHHcCCceECCCc-Cc
Confidence 45677777666653 7777 44
No 121
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=36.42 E-value=44 Score=20.08 Aligned_cols=7 Identities=43% Similarity=1.113 Sum_probs=3.8
Q ss_pred eCCCCCC
Q 032984 66 VCDFCGG 72 (129)
Q Consensus 66 ~C~~C~G 72 (129)
.|+.|+.
T Consensus 5 ~C~~CG~ 11 (46)
T PRK00398 5 KCARCGR 11 (46)
T ss_pred ECCCCCC
Confidence 4555554
No 122
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=34.39 E-value=40 Score=19.83 Aligned_cols=27 Identities=30% Similarity=0.711 Sum_probs=11.6
Q ss_pred eCCCCCCCceEEeccCC-ceeeeCcccc
Q 032984 66 VCDFCGGQKTNVKAQNN-RIYRRCPTCR 92 (129)
Q Consensus 66 ~C~~C~GSG~v~~~~g~-~~~~rC~~Cn 92 (129)
-|+.|++.=.....+|+ +.+..|+.|+
T Consensus 2 fC~~CG~~l~~~ip~gd~r~R~vC~~Cg 29 (34)
T PF14803_consen 2 FCPQCGGPLERRIPEGDDRERLVCPACG 29 (34)
T ss_dssp B-TTT--B-EEE--TT-SS-EEEETTTT
T ss_pred ccccccChhhhhcCCCCCccceECCCCC
Confidence 37888887433323333 4566777775
No 123
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=34.36 E-value=34 Score=20.57 Aligned_cols=29 Identities=24% Similarity=0.422 Sum_probs=15.0
Q ss_pred eeeCCCCCCCceEEecc-CCceeeeCcccc
Q 032984 64 WLVCDFCGGQKTNVKAQ-NNRIYRRCPTCR 92 (129)
Q Consensus 64 ~v~C~~C~GSG~v~~~~-g~~~~~rC~~Cn 92 (129)
..+|+.|.|+-+-...+ ...+..-|.+|.
T Consensus 3 ~~pCP~CGG~DrFr~~d~~g~G~~~C~~Cg 32 (37)
T smart00778 3 HGPCPNCGGSDRFRFDDKDGRGTWFCSVCG 32 (37)
T ss_pred ccCCCCCCCccccccccCCCCcCEEeCCCC
Confidence 35788888875532222 112334555554
No 124
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=34.02 E-value=49 Score=28.30 Aligned_cols=68 Identities=15% Similarity=0.186 Sum_probs=36.6
Q ss_pred ccccccCCCCCCcCe---eeCCCCCCCceEEe--ccCC---ceeeeCccccccceeeCCCCccceeEeecCCcchHHHH
Q 032984 50 VEVGIMCESCNGKGW---LVCDFCGGQKTNVK--AQNN---RIYRRCPTCRAVGYVLCSKCKVFKCVTFPNYDDANALL 120 (129)
Q Consensus 50 ~~~~~~C~~C~G~G~---v~C~~C~GSG~v~~--~~g~---~~~~rC~~CnG~Glv~Cp~C~G~~~v~~~n~~D~~~l~ 120 (129)
+.+.-.|.-|+-... +.|+.|+-++++.. .++. .....|.+|++.=++.=..-.. ..=+.-||..-|+
T Consensus 209 G~RyL~CslC~teW~~~R~~C~~Cg~~~~l~y~~~~~~~~~~r~e~C~~C~~YlK~~~~~~d~---~~~p~adDlatL~ 284 (309)
T PRK03564 209 GLRYLHCNLCESEWHVVRVKCSNCEQSGKLHYWSLDSEQAAVKAESCGDCGTYLKILYQEKDP---KVEAVADDLASLV 284 (309)
T ss_pred CceEEEcCCCCCcccccCccCCCCCCCCceeeeeecCCCcceEeeecccccccceecccccCC---CCCcchhHHhhhH
Confidence 345556777766655 46888876554321 1221 2457788888776665222211 1224455666655
No 125
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=33.82 E-value=59 Score=19.28 Aligned_cols=28 Identities=25% Similarity=0.532 Sum_probs=16.6
Q ss_pred eeCCCCCCCceEEecc---CCceeeeCcccc
Q 032984 65 LVCDFCGGQKTNVKAQ---NNRIYRRCPTCR 92 (129)
Q Consensus 65 v~C~~C~GSG~v~~~~---g~~~~~rC~~Cn 92 (129)
|.|+.|+..-.+.... .+...-+|..|.
T Consensus 6 v~CP~C~s~~~v~k~G~~~~G~qryrC~~C~ 36 (36)
T PF03811_consen 6 VHCPRCQSTEGVKKNGKSPSGHQRYRCKDCR 36 (36)
T ss_pred eeCCCCCCCCcceeCCCCCCCCEeEecCcCC
Confidence 6799999887444321 122345677763
No 126
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=32.59 E-value=49 Score=18.80 Aligned_cols=9 Identities=33% Similarity=1.080 Sum_probs=5.0
Q ss_pred eeeCccccc
Q 032984 85 YRRCPTCRA 93 (129)
Q Consensus 85 ~~rC~~CnG 93 (129)
...||.|++
T Consensus 26 ~~~CP~Cg~ 34 (41)
T smart00834 26 LATCPECGG 34 (41)
T ss_pred CCCCCCCCC
Confidence 345666655
No 127
>PF13408 Zn_ribbon_recom: Recombinase zinc beta ribbon domain
Probab=32.04 E-value=97 Score=18.55 Aligned_cols=35 Identities=34% Similarity=0.646 Sum_probs=23.4
Q ss_pred cCeeeCCCCCCCceEEeccCCceeeeCccccccce
Q 032984 62 KGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGY 96 (129)
Q Consensus 62 ~G~v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Gl 96 (129)
+|.+.|..|+..=......+...+-.|......|.
T Consensus 3 ~g~l~C~~CG~~m~~~~~~~~~~yy~C~~~~~~~~ 37 (58)
T PF13408_consen 3 SGLLRCGHCGSKMTRRKRKGKYRYYRCSNRRRKGK 37 (58)
T ss_pred CCcEEcccCCcEeEEEECCCCceEEEcCCCcCCCC
Confidence 46788888887633322224446788999988776
No 128
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=31.58 E-value=16 Score=35.60 Aligned_cols=48 Identities=23% Similarity=0.461 Sum_probs=0.0
Q ss_pred cccccccCCCCCCcCe-eeCCCCCCCceEEeccCCceeeeCcccccccee-eCCCCcc
Q 032984 49 EVEVGIMCESCNGKGW-LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYV-LCSKCKV 104 (129)
Q Consensus 49 ~~~~~~~C~~C~G~G~-v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv-~Cp~C~G 104 (129)
.+.....|..|+-..+ ..|+.|++.... ...|+.|+-.-.- .||.|..
T Consensus 651 vei~~r~Cp~Cg~~t~~~~Cp~CG~~T~~--------~~~Cp~C~~~~~~~~C~~C~~ 700 (900)
T PF03833_consen 651 VEIGRRRCPKCGKETFYNRCPECGSHTEP--------VYVCPDCGIEVEEDECPKCGR 700 (900)
T ss_dssp ----------------------------------------------------------
T ss_pred EeeecccCcccCCcchhhcCcccCCcccc--------ceeccccccccCccccccccc
Confidence 3456678999998888 479999887553 3578988764322 4999953
No 129
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=30.48 E-value=60 Score=23.39 Aligned_cols=22 Identities=14% Similarity=0.549 Sum_probs=13.8
Q ss_pred ccceeeCCCCccceeEeecCCc
Q 032984 93 AVGYVLCSKCKVFKCVTFPNYD 114 (129)
Q Consensus 93 G~Glv~Cp~C~G~~~v~~~n~~ 114 (129)
+.+.+.|+.|.-+......+-+
T Consensus 39 ~~~h~~C~~CG~y~~~~V~~l~ 60 (99)
T PRK14892 39 NIAIITCGNCGLYTEFEVPSVY 60 (99)
T ss_pred CcceEECCCCCCccCEECCccc
Confidence 5778889999655544444333
No 130
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=30.38 E-value=27 Score=23.37 Aligned_cols=29 Identities=28% Similarity=0.555 Sum_probs=22.0
Q ss_pred eeeCcccccccee-eCCCCccceeEeecCC
Q 032984 85 YRRCPTCRAVGYV-LCSKCKVFKCVTFPNY 113 (129)
Q Consensus 85 ~~rC~~CnG~Glv-~Cp~C~G~~~v~~~n~ 113 (129)
..+|+.|+..=+. .||.|.+...+..|--
T Consensus 5 ~rkC~~cg~YTLke~Cp~CG~~t~~~~Ppr 34 (59)
T COG2260 5 IRKCPKCGRYTLKEKCPVCGGDTKVPHPPR 34 (59)
T ss_pred hhcCcCCCceeecccCCCCCCccccCCCCC
Confidence 4678998888887 6999988776665543
No 131
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=29.16 E-value=31 Score=24.93 Aligned_cols=22 Identities=45% Similarity=0.916 Sum_probs=15.0
Q ss_pred ccccCCCCCCcCe------eeCCCCCCC
Q 032984 52 VGIMCESCNGKGW------LVCDFCGGQ 73 (129)
Q Consensus 52 ~~~~C~~C~G~G~------v~C~~C~GS 73 (129)
.-..|+-|+++|+ ++|..|+-.
T Consensus 34 a~daCeiC~~~GY~q~g~~lvC~~C~~~ 61 (102)
T PF10080_consen 34 AFDACEICGPKGYYQEGDQLVCKNCGVR 61 (102)
T ss_pred EEEeccccCCCceEEECCEEEEecCCCE
Confidence 3456888888777 577777643
No 132
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=28.98 E-value=76 Score=18.93 Aligned_cols=9 Identities=33% Similarity=0.910 Sum_probs=5.0
Q ss_pred eeeCccccc
Q 032984 85 YRRCPTCRA 93 (129)
Q Consensus 85 ~~rC~~CnG 93 (129)
...||.|++
T Consensus 26 ~~~CP~Cg~ 34 (42)
T PF09723_consen 26 PVPCPECGS 34 (42)
T ss_pred CCcCCCCCC
Confidence 445666655
No 133
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=28.47 E-value=53 Score=28.00 Aligned_cols=45 Identities=20% Similarity=0.606 Sum_probs=26.9
Q ss_pred CeeeCCCCCCCceEEeccCCceeeeCccccccce--------------e---eCCCCccceeEeecCCc
Q 032984 63 GWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGY--------------V---LCSKCKVFKCVTFPNYD 114 (129)
Q Consensus 63 G~v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Gl--------------v---~Cp~C~G~~~v~~~n~~ 114 (129)
++..|..|+..=... +..|+.|+.... + .|..|.+|--+.|++.|
T Consensus 209 RyL~CslC~teW~~~-------R~~C~~Cg~~~~l~y~~~e~~~~~~~~r~e~C~~C~~YlK~~~~~~d 270 (305)
T TIGR01562 209 RYLSCSLCATEWHYV-------RVKCSHCEESKHLAYLSLEHDAEKAVLKAETCDSCQGYLKILYQEKD 270 (305)
T ss_pred eEEEcCCCCCccccc-------CccCCCCCCCCceeeEeecCCCCCcceEEeeccccccchhhhccccC
Confidence 346777776654432 457777765431 1 28889887655565433
No 134
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=27.90 E-value=17 Score=32.51 Aligned_cols=54 Identities=31% Similarity=0.718 Sum_probs=31.6
Q ss_pred cccccCCCCCCc------CeeeCCCCCCCceEEeccCCceeeeCcccccccee--------eCCCCccceeEe
Q 032984 51 EVGIMCESCNGK------GWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYV--------LCSKCKVFKCVT 109 (129)
Q Consensus 51 ~~~~~C~~C~G~------G~v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv--------~Cp~C~G~~~v~ 109 (129)
.....|.-|+.+ |-++|-.|+|-=+.+. + ..+=.+|.++..- +||.|.-.||.+
T Consensus 13 dl~ElCPVCGDkVSGYHYGLLTCESCKGFFKRTV-Q----NnK~YtC~e~qnC~iDkTqRKRCP~CRFQKCLt 80 (475)
T KOG4218|consen 13 DLGELCPVCGDKVSGYHYGLLTCESCKGFFKRTV-Q----NNKQYTCSEEQNCHIDKTQRKRCPSCRFQKCLT 80 (475)
T ss_pred ccccccccccCccccceeeeeehhhhhhHHHHHh-h----cCcceecccccccccchHhhccCCchhHHHHhh
Confidence 356778888764 2267777777633221 1 2356667766532 377777666554
No 135
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=27.62 E-value=62 Score=24.65 Aligned_cols=18 Identities=39% Similarity=1.121 Sum_probs=12.4
Q ss_pred eeCccccc-----cceeeCCCCc
Q 032984 86 RRCPTCRA-----VGYVLCSKCK 103 (129)
Q Consensus 86 ~rC~~CnG-----~Glv~Cp~C~ 103 (129)
..||.|.- +|.+.||+|.
T Consensus 29 ~hCp~Cg~PLF~KdG~v~CPvC~ 51 (131)
T COG1645 29 KHCPKCGTPLFRKDGEVFCPVCG 51 (131)
T ss_pred hhCcccCCcceeeCCeEECCCCC
Confidence 34566543 5888899994
No 136
>PF05180 zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNL-type zinc finger is found in Tim15, a zinc finger protein essential for protein import into mitochondria. Mitochondrial functions rely on the correct transport of resident proteins synthesized in the cytosol to mitochondria. Protein import into mitochondria is mediated by membrane protein complexes, protein translocators, in the outer and inner mitochondrial membranes, in cooperation with their assistant proteins in the cytosol, intermembrane space and matrix. Proteins destined to the mitochondrial matrix cross the outer membrane with the aid of the outer membrane translocator, the tOM40 complex, and then the inner membrane with the aid of the inner membrane translocator, the TIM23 complex, and mitochondrial motor and chaperone (MMC) proteins including mitochondrial heat- shock protein 70 (mtHsp70), and translocase in the inner mitochondrial membrane (Tim)15. Tim15 is also known as zinc finger motif (Zim)17 or mtHsp70 escort protein (Hep)1. Tim15 contains a zinc-finger motif (CXXC and CXXC) of ~100 residues, which has been named DNL after a short C-terminal motif of D(N/H)L [, , ]. The DNL-type zinc finger is an L-shaped molecule. The two CXXC motifs are located at the end of the L, and are sandwiched by two- stranded antiparallel beta-sheets. Two short alpha-helices constitute another leg of the L. The outer (convex) face of the L has a large acidic groove, which is lined with five acidic residues, whereas the inner (concave) face of the L has two positively charged residues, next to the CXXC motifs []. This entry represents the DNL-type zinc finger.; GO: 0008270 zinc ion binding; PDB: 2E2Z_A.
Probab=27.23 E-value=41 Score=22.73 Aligned_cols=49 Identities=14% Similarity=0.473 Sum_probs=19.8
Q ss_pred eCCCCCCCceEEecc----CCceeeeCccccccceeeCCCCccceeEeecCC--cchHHHHH
Q 032984 66 VCDFCGGQKTNVKAQ----NNRIYRRCPTCRAVGYVLCSKCKVFKCVTFPNY--DDANALLE 121 (129)
Q Consensus 66 ~C~~C~GSG~v~~~~----g~~~~~rC~~CnG~Glv~Cp~C~G~~~v~~~n~--~D~~~l~~ 121 (129)
+|..|+.+-....+. .+....+|+.|+-..++. ..+.|+.+ .+.|+++.
T Consensus 6 TC~~C~~Rs~~~~sk~aY~~GvViv~C~gC~~~HlIa-------DnLg~f~e~~~~iE~~l~ 60 (66)
T PF05180_consen 6 TCNKCGTRSAKMFSKQAYHKGVVIVQCPGCKNRHLIA-------DNLGWFGENKRNIEDILK 60 (66)
T ss_dssp EETTTTEEEEEEEEHHHHHTSEEEEE-TTS--EEES---------SS-SGGGS---HHHHHH
T ss_pred EcCCCCCccceeeCHHHHhCCeEEEECCCCcceeeeh-------hhhcccccCCCCHHHHHH
Confidence 577786654332221 223345555555544431 13444443 36677663
No 137
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=26.93 E-value=66 Score=19.76 Aligned_cols=7 Identities=43% Similarity=1.327 Sum_probs=3.8
Q ss_pred eCCCCCC
Q 032984 66 VCDFCGG 72 (129)
Q Consensus 66 ~C~~C~G 72 (129)
.|..|+.
T Consensus 4 ~C~~Cg~ 10 (44)
T smart00659 4 ICGECGR 10 (44)
T ss_pred ECCCCCC
Confidence 3555654
No 138
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.87 E-value=56 Score=29.20 Aligned_cols=37 Identities=30% Similarity=0.790 Sum_probs=22.3
Q ss_pred ccccCCCCC-------CcCeeeCCCCCCCceEEeccCCceeeeCccccccce
Q 032984 52 VGIMCESCN-------GKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGY 96 (129)
Q Consensus 52 ~~~~C~~C~-------G~G~v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Gl 96 (129)
....|..|. ..+.+.|.+|+-+-.. ...||.|++.-+
T Consensus 221 ~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~--------~~~Cp~C~s~~l 264 (505)
T TIGR00595 221 YILCCPNCDVSLTYHKKEGKLRCHYCGYQEPI--------PKTCPQCGSEDL 264 (505)
T ss_pred CccCCCCCCCceEEecCCCeEEcCCCcCcCCC--------CCCCCCCCCCee
Confidence 456777777 3344677777654322 347777776543
No 139
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=26.22 E-value=46 Score=22.16 Aligned_cols=43 Identities=33% Similarity=0.760 Sum_probs=24.9
Q ss_pred ccccCCCCCCc------Ce-eeCCCCCCCceEEeccCCceeeeCccccccceee-CCCCccc
Q 032984 52 VGIMCESCNGK------GW-LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL-CSKCKVF 105 (129)
Q Consensus 52 ~~~~C~~C~G~------G~-v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~-Cp~C~G~ 105 (129)
....|.+|+.. +. -.|+.| | ..+ ..||..|...+... ||.| ||
T Consensus 6 ~~~~CtSCg~~i~~~~~~~~F~CPnC-G--~~~-------I~RC~~CRk~~~~Y~CP~C-GF 56 (59)
T PRK14890 6 EPPKCTSCGIEIAPREKAVKFLCPNC-G--EVI-------IYRCEKCRKQSNPYTCPKC-GF 56 (59)
T ss_pred cCccccCCCCcccCCCccCEeeCCCC-C--Cee-------EeechhHHhcCCceECCCC-CC
Confidence 34467777621 22 257777 2 221 35777777777654 8887 44
No 140
>PRK00420 hypothetical protein; Validated
Probab=25.45 E-value=54 Score=24.20 Aligned_cols=20 Identities=30% Similarity=0.735 Sum_probs=12.9
Q ss_pred eeCccccc------cceeeCCCCccc
Q 032984 86 RRCPTCRA------VGYVLCSKCKVF 105 (129)
Q Consensus 86 ~rC~~CnG------~Glv~Cp~C~G~ 105 (129)
..||.|+. +|.+.||.|...
T Consensus 24 ~~CP~Cg~pLf~lk~g~~~Cp~Cg~~ 49 (112)
T PRK00420 24 KHCPVCGLPLFELKDGEVVCPVHGKV 49 (112)
T ss_pred CCCCCCCCcceecCCCceECCCCCCe
Confidence 45666653 577778888553
No 141
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=25.14 E-value=42 Score=27.07 Aligned_cols=45 Identities=20% Similarity=0.441 Sum_probs=29.0
Q ss_pred ccccCCCCCCcCee--eCC-----CCCCCceEEeccCCceeeeCccccccceee
Q 032984 52 VGIMCESCNGKGWL--VCD-----FCGGQKTNVKAQNNRIYRRCPTCRAVGYVL 98 (129)
Q Consensus 52 ~~~~C~~C~G~G~v--~C~-----~C~GSG~v~~~~g~~~~~rC~~CnG~Glv~ 98 (129)
....|..|+..|.+ -|+ .|+=.+.....- .....|..|+++|-+.
T Consensus 59 ~~~~C~nCg~~GH~~~DCP~~iC~~C~~~~H~s~~C--~~~~~C~~Cg~~GH~~ 110 (190)
T COG5082 59 ENPVCFNCGQNGHLRRDCPHSICYNCSWDGHRSNHC--PKPKKCYNCGETGHLS 110 (190)
T ss_pred cccccchhcccCcccccCChhHhhhcCCCCcccccC--CcccccccccccCccc
Confidence 45789999999984 255 884344433211 1136788888888765
No 142
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=24.91 E-value=5.6 Score=34.15 Aligned_cols=36 Identities=19% Similarity=0.534 Sum_probs=24.2
Q ss_pred eeeCcccccccee----------------eCCCCccceeEeecCCc-----chHHHH
Q 032984 85 YRRCPTCRAVGYV----------------LCSKCKVFKCVTFPNYD-----DANALL 120 (129)
Q Consensus 85 ~~rC~~CnG~Glv----------------~Cp~C~G~~~v~~~n~~-----D~~~l~ 120 (129)
+.+|..|+..+.. .|.+|.++=-+.|+|-| +++||-
T Consensus 225 R~KC~nC~~t~~l~y~sl~s~E~A~vkAEtC~~C~sYlKilyqekdp~veavADDlA 281 (308)
T COG3058 225 RVKCSNCEQSKKLHYWSLESSELAAVKAETCGDCNSYLKILYQEKDPKVEAVADDLA 281 (308)
T ss_pred HHHhccccccCCccceeccchhhhHhhhhcCCcHHHHHHHHHHhcCCccccchHHHH
Confidence 4567777666543 28888887777888877 555554
No 143
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=24.67 E-value=63 Score=18.06 Aligned_cols=24 Identities=33% Similarity=0.855 Sum_probs=10.8
Q ss_pred eCCCCCCCceEEeccCCceeeeCcccc
Q 032984 66 VCDFCGGQKTNVKAQNNRIYRRCPTCR 92 (129)
Q Consensus 66 ~C~~C~GSG~v~~~~g~~~~~rC~~Cn 92 (129)
-|+.|++.-.... + .....|+.|+
T Consensus 5 fC~~CG~~t~~~~--~-g~~r~C~~Cg 28 (32)
T PF09297_consen 5 FCGRCGAPTKPAP--G-GWARRCPSCG 28 (32)
T ss_dssp B-TTT--BEEE-S--S-SS-EEESSSS
T ss_pred ccCcCCccccCCC--C-cCEeECCCCc
Confidence 3777777655432 1 2356777775
No 144
>PRK05580 primosome assembly protein PriA; Validated
Probab=24.49 E-value=56 Score=30.25 Aligned_cols=48 Identities=21% Similarity=0.479 Sum_probs=32.6
Q ss_pred cccCCCCCCcCeeeCCCCCCCceEEeccCCceeeeCcccccccee--eCCCCccc
Q 032984 53 GIMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYV--LCSKCKVF 105 (129)
Q Consensus 53 ~~~C~~C~G~G~v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Glv--~Cp~C~G~ 105 (129)
...|..|+- ...|+.|+++=..... .....|+.|+-.-.+ .||.|.+.
T Consensus 381 ~~~C~~Cg~--~~~C~~C~~~l~~h~~---~~~l~Ch~Cg~~~~~~~~Cp~Cg~~ 430 (679)
T PRK05580 381 FLLCRDCGW--VAECPHCDASLTLHRF---QRRLRCHHCGYQEPIPKACPECGST 430 (679)
T ss_pred ceEhhhCcC--ccCCCCCCCceeEECC---CCeEECCCCcCCCCCCCCCCCCcCC
Confidence 356888853 2579999996433322 225789999987654 49999765
No 145
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=24.45 E-value=45 Score=16.79 Aligned_cols=8 Identities=38% Similarity=0.829 Sum_probs=3.2
Q ss_pred CCCCCCCc
Q 032984 67 CDFCGGQK 74 (129)
Q Consensus 67 C~~C~GSG 74 (129)
|..|+..|
T Consensus 3 C~~C~~~G 10 (18)
T PF00098_consen 3 CFNCGEPG 10 (18)
T ss_dssp CTTTSCSS
T ss_pred CcCCCCcC
Confidence 33444333
No 146
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=24.45 E-value=54 Score=23.78 Aligned_cols=25 Identities=24% Similarity=0.650 Sum_probs=14.7
Q ss_pred cccccCCCCCCcC------eeeCCCCCCCce
Q 032984 51 EVGIMCESCNGKG------WLVCDFCGGQKT 75 (129)
Q Consensus 51 ~~~~~C~~C~G~G------~v~C~~C~GSG~ 75 (129)
.....|..|+-.- +..|+.|++...
T Consensus 69 p~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~~ 99 (117)
T PRK00564 69 KVELECKDCSHVFKPNALDYGVCEKCHSKNV 99 (117)
T ss_pred CCEEEhhhCCCccccCCccCCcCcCCCCCce
Confidence 3556777777432 224777777643
No 147
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=24.36 E-value=48 Score=18.81 Aligned_cols=19 Identities=21% Similarity=0.719 Sum_probs=12.0
Q ss_pred eeCccccccceeeCCCCcc
Q 032984 86 RRCPTCRAVGYVLCSKCKV 104 (129)
Q Consensus 86 ~rC~~CnG~Glv~Cp~C~G 104 (129)
..|..|+..+.-+||.|..
T Consensus 3 ~~C~vC~~~~kY~Cp~C~~ 21 (30)
T PF04438_consen 3 KLCSVCGNPAKYRCPRCGA 21 (30)
T ss_dssp EEETSSSSEESEE-TTT--
T ss_pred CCCccCcCCCEEECCCcCC
Confidence 4677777777777888754
No 148
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=24.18 E-value=85 Score=25.93 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=11.1
Q ss_pred CCCCcc---ceeEeecCCc
Q 032984 99 CSKCKV---FKCVTFPNYD 114 (129)
Q Consensus 99 Cp~C~G---~~~v~~~n~~ 114 (129)
|+.|.+ ...|.|+++.
T Consensus 149 C~~Cg~~~lrP~VV~fGE~ 167 (250)
T COG0846 149 CPKCGGPVLRPDVVWFGEP 167 (250)
T ss_pred CccCCCccccCCEEEeCCC
Confidence 777766 4478888765
No 149
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=23.92 E-value=51 Score=23.78 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=9.8
Q ss_pred eeeCcccccccee-----eCCCCccc
Q 032984 85 YRRCPTCRAVGYV-----LCSKCKVF 105 (129)
Q Consensus 85 ~~rC~~CnG~Glv-----~Cp~C~G~ 105 (129)
..+|..|+....+ .||.|.++
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs~ 95 (113)
T PRK12380 70 QAWCWDCSQVVEIHQHDAQCPHCHGE 95 (113)
T ss_pred EEEcccCCCEEecCCcCccCcCCCCC
Confidence 4455555543322 26666543
No 150
>PHA00626 hypothetical protein
Probab=23.90 E-value=71 Score=21.34 Aligned_cols=17 Identities=24% Similarity=0.509 Sum_probs=12.9
Q ss_pred eeCccccc-cceeeCCCC
Q 032984 86 RRCPTCRA-VGYVLCSKC 102 (129)
Q Consensus 86 ~rC~~CnG-~Glv~Cp~C 102 (129)
.+|..|++ ..+-.|+.|
T Consensus 12 vrcg~cr~~snrYkCkdC 29 (59)
T PHA00626 12 AKEKTMRGWSDDYVCCDC 29 (59)
T ss_pred eeeceecccCcceEcCCC
Confidence 47777877 666678888
No 151
>PF04236 Transp_Tc5_C: Tc5 transposase C-terminal domain; InterPro: IPR007350 This domain corresponds to a C-terminal cysteine rich region that probably binds to a metal ion and could be DNA-binding. It is found in association with the DDE superfamily (IPR004875 from INTERPRO) and the Tc5 transposase family (IPR004906 from INTERPRO). More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=22.95 E-value=71 Score=21.23 Aligned_cols=23 Identities=26% Similarity=0.813 Sum_probs=17.1
Q ss_pred cccccCCC--CCCcCeeeCCCCCCC
Q 032984 51 EVGIMCES--CNGKGWLVCDFCGGQ 73 (129)
Q Consensus 51 ~~~~~C~~--C~G~G~v~C~~C~GS 73 (129)
.....|+. |+..+++.|.+|.=+
T Consensus 25 ~~~~~C~~~gC~~~s~I~C~~Ckk~ 49 (63)
T PF04236_consen 25 NVAGDCDITGCNNTSFIRCAYCKKS 49 (63)
T ss_pred CCcCcCCCCCCCCcCEEEccccCCc
Confidence 35667777 888888888888754
No 152
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=22.48 E-value=78 Score=20.26 Aligned_cols=29 Identities=34% Similarity=0.662 Sum_probs=16.7
Q ss_pred eeCCCCCCC-ceEEeccCCceeeeCccccc
Q 032984 65 LVCDFCGGQ-KTNVKAQNNRIYRRCPTCRA 93 (129)
Q Consensus 65 v~C~~C~GS-G~v~~~~g~~~~~rC~~CnG 93 (129)
+.|..|+.. |.....+.....-+|+.|+.
T Consensus 23 LIC~~C~~hNGla~~~~~~~i~y~C~~Cg~ 52 (54)
T PF10058_consen 23 LICSKCFSHNGLAPKEEFEEIQYRCPYCGA 52 (54)
T ss_pred EECcccchhhcccccccCCceEEEcCCCCC
Confidence 567777665 44323333445667888763
No 153
>PRK14873 primosome assembly protein PriA; Provisional
Probab=22.21 E-value=1.2e+02 Score=28.45 Aligned_cols=48 Identities=23% Similarity=0.463 Sum_probs=32.4
Q ss_pred ccCCCCCCcCeeeCCCCCCCceEEeccCCceeeeCccccccce-eeCCCCccce
Q 032984 54 IMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGY-VLCSKCKVFK 106 (129)
Q Consensus 54 ~~C~~C~G~G~v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~Gl-v~Cp~C~G~~ 106 (129)
..|..|+= ...|++|+++=..... ....+|+.|+-.-. ..||.|.+..
T Consensus 384 l~C~~Cg~--~~~C~~C~~~L~~h~~---~~~l~Ch~CG~~~~p~~Cp~Cgs~~ 432 (665)
T PRK14873 384 LACARCRT--PARCRHCTGPLGLPSA---GGTPRCRWCGRAAPDWRCPRCGSDR 432 (665)
T ss_pred eEhhhCcC--eeECCCCCCceeEecC---CCeeECCCCcCCCcCccCCCCcCCc
Confidence 46888852 2579999998554432 22679999987532 2499998653
No 154
>PRK05580 primosome assembly protein PriA; Validated
Probab=21.44 E-value=95 Score=28.79 Aligned_cols=36 Identities=28% Similarity=0.673 Sum_probs=23.7
Q ss_pred ccccCCCCCCc-------CeeeCCCCCCCceEEeccCCceeeeCccccccc
Q 032984 52 VGIMCESCNGK-------GWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVG 95 (129)
Q Consensus 52 ~~~~C~~C~G~-------G~v~C~~C~GSG~v~~~~g~~~~~rC~~CnG~G 95 (129)
....|..|.+. +.+.|.+|+-+-.. ...||.|++.-
T Consensus 389 ~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~--------~~~Cp~Cg~~~ 431 (679)
T PRK05580 389 WVAECPHCDASLTLHRFQRRLRCHHCGYQEPI--------PKACPECGSTD 431 (679)
T ss_pred CccCCCCCCCceeEECCCCeEECCCCcCCCCC--------CCCCCCCcCCe
Confidence 45678888754 44678888765322 34788887763
No 155
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=21.38 E-value=84 Score=21.59 Aligned_cols=13 Identities=23% Similarity=0.710 Sum_probs=7.9
Q ss_pred cccceeeCCCCcc
Q 032984 92 RAVGYVLCSKCKV 104 (129)
Q Consensus 92 nG~Glv~Cp~C~G 104 (129)
.+.|.+.|..|..
T Consensus 42 ~~~~~~~C~~Cg~ 54 (81)
T PF05129_consen 42 EGIGILSCRVCGE 54 (81)
T ss_dssp TTEEEEEESSS--
T ss_pred CCEEEEEecCCCC
Confidence 5667777777743
No 156
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=21.25 E-value=90 Score=23.10 Aligned_cols=16 Identities=38% Similarity=0.982 Sum_probs=7.9
Q ss_pred Cccccccceee---CCCCc
Q 032984 88 CPTCRAVGYVL---CSKCK 103 (129)
Q Consensus 88 C~~CnG~Glv~---Cp~C~ 103 (129)
||.|++.=.|. |+.|.
T Consensus 1 CPvCg~~l~vt~l~C~~C~ 19 (113)
T PF09862_consen 1 CPVCGGELVVTRLKCPSCG 19 (113)
T ss_pred CCCCCCceEEEEEEcCCCC
Confidence 55555443332 66664
No 157
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=20.80 E-value=74 Score=17.53 Aligned_cols=6 Identities=50% Similarity=1.497 Sum_probs=2.8
Q ss_pred eeCccc
Q 032984 86 RRCPTC 91 (129)
Q Consensus 86 ~rC~~C 91 (129)
-.||+|
T Consensus 17 f~CPnC 22 (24)
T PF07754_consen 17 FPCPNC 22 (24)
T ss_pred EeCCCC
Confidence 344444
No 158
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=20.72 E-value=44 Score=28.96 Aligned_cols=24 Identities=38% Similarity=0.804 Sum_probs=19.5
Q ss_pred ccccCCCCCCcCeeeCCCCCCCceEEe
Q 032984 52 VGIMCESCNGKGWLVCDFCGGQKTNVK 78 (129)
Q Consensus 52 ~~~~C~~C~G~G~v~C~~C~GSG~v~~ 78 (129)
..+.|..|+|+| |..|+++|++-.
T Consensus 259 vdv~~~~~~g~g---c~~ck~~~WiEi 282 (339)
T PRK00488 259 VDVSCFKCGGKG---CRVCKGTGWLEI 282 (339)
T ss_pred EEEEEeccCCCc---ccccCCCCceEE
Confidence 557788899887 889999998753
No 159
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.48 E-value=92 Score=22.22 Aligned_cols=28 Identities=29% Similarity=0.655 Sum_probs=13.0
Q ss_pred eeCCCCCCCceEEeccCCceeeeCccccc
Q 032984 65 LVCDFCGGQKTNVKAQNNRIYRRCPTCRA 93 (129)
Q Consensus 65 v~C~~C~GSG~v~~~~g~~~~~rC~~CnG 93 (129)
+.|+.|+-+=+.....|. ..--||.|.|
T Consensus 2 llCP~C~v~l~~~~rs~v-EiD~CPrCrG 29 (88)
T COG3809 2 LLCPICGVELVMSVRSGV-EIDYCPRCRG 29 (88)
T ss_pred cccCcCCceeeeeeecCc-eeeeCCcccc
Confidence 357777766443322222 1234554444
Done!