BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032986
(129 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O80594|ERG28_ARATH Ergosterol biosynthetic protein 28 OS=Arabidopsis thaliana
GN=At1g10030 PE=2 SV=2
Length = 129
Score = 223 bits (569), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 107/129 (82%), Positives = 118/129 (91%)
Query: 1 MKALGWWLMLVGSLRLASVWFGFFDIWALRLAVFSNTTMTEVHGRTFGIWTLLTCTLCFL 60
MKALG+WLM+VGSLRLASVWFGFF+IWALRLAVFS TTM+EVHGRTFG+WTLLTCTLCFL
Sbjct: 1 MKALGYWLMVVGSLRLASVWFGFFNIWALRLAVFSQTTMSEVHGRTFGVWTLLTCTLCFL 60
Query: 61 CAFNLENRPLYWATFLSFIYAFGHFLTEYLIYQTMAIGNLTTVGIFAGTSIIWMLLQWNA 120
CAFNLEN+PLY ATFLSFIYA GHFLTEYL YQTM I NL+TVG FAGTSI+WMLL+WN+
Sbjct: 61 CAFNLENKPLYLATFLSFIYALGHFLTEYLFYQTMTIANLSTVGFFAGTSIVWMLLEWNS 120
Query: 121 RQQVHPKDS 129
+Q H K S
Sbjct: 121 LEQPHSKLS 129
>sp|Q5R589|ERG28_PONAB Probable ergosterol biosynthetic protein 28 OS=Pongo abelii PE=2
SV=1
Length = 140
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 6/109 (5%)
Query: 1 MKALGWWLMLVGSLRLASVWFGFFDIWALRLAVFSNTT--MTEVHGRTFGIWTLLTCTLC 58
+ L WL++V + + + F D L +++ + + RTFGIWTLL+ +
Sbjct: 5 LNVLRSWLVMVSIIAMGNTLQSFRDHTFLYEKLYTGKPNLVNGLQARTFGIWTLLSSVIR 64
Query: 59 FLCAFNLENRPLYWATFLSFIYAFGHFLTEYLIYQTMAIGNLTTVGIFA 107
LCA ++ N+ LY T +F+ A GHFL+E +Y T A T+G+ A
Sbjct: 65 CLCAIDIHNKTLYHITLWTFLLALGHFLSELFVYGTAA----PTIGVLA 109
>sp|Q9UKR5|ERG28_HUMAN Probable ergosterol biosynthetic protein 28 OS=Homo sapiens
GN=C14orf1 PE=1 SV=1
Length = 140
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 6/109 (5%)
Query: 1 MKALGWWLMLVGSLRLASVWFGFFDIWALRLAVFSNTT--MTEVHGRTFGIWTLLTCTLC 58
+ L WL++V + + + F D L +++ + + RTFGIWTLL+ +
Sbjct: 5 LNVLRSWLVMVSIIAMGNTLQSFRDHTFLYEKLYTGKPNLVNGLQARTFGIWTLLSSVIR 64
Query: 59 FLCAFNLENRPLYWATFLSFIYAFGHFLTEYLIYQTMAIGNLTTVGIFA 107
LCA ++ N+ LY T +F+ A GHFL+E +Y T A T+G+ A
Sbjct: 65 CLCAIDIHNKTLYHITLWTFLLALGHFLSELFVYGTAA----PTIGVLA 109
>sp|Q9ERY9|ERG28_MOUSE Probable ergosterol biosynthetic protein 28 OS=Mus musculus
GN=ORF11 PE=2 SV=1
Length = 140
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 6/109 (5%)
Query: 1 MKALGWWLMLVGSLRLASVWFGFFDIWALRLAVFSNTT--MTEVHGRTFGIWTLLTCTLC 58
+ L WL++V + + + F D L +++ + + RTFGIWTLL+ +
Sbjct: 5 LNVLRSWLVMVSIIAMGNTLQSFRDHTFLYEKLYTGKPNLVNGLQARTFGIWTLLSSVIR 64
Query: 59 FLCAFNLENRPLYWATFLSFIYAFGHFLTEYLIYQTMAIGNLTTVGIFA 107
LCA ++ N+ LY T +F+ A GHFL+E ++ T A TVG+ A
Sbjct: 65 CLCAIDIHNKTLYHITLWTFLLALGHFLSELFVFGTAA----PTVGVLA 109
>sp|O74820|ERG28_SCHPO Ergosterol biosynthetic protein 28 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=erg28 PE=3 SV=1
Length = 136
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 33 VFSNTT-MTEVHGRTFGIWTLLTCTLCFLCAFNLENRPLYWATFLSFIYAFGHFLTEYLI 91
V+SNT + + GRTFGIWTLL+ + F CA+++ N +Y+ ++ A HFL+E+L+
Sbjct: 41 VYSNTNEVNGLQGRTFGIWTLLSAIVRFYCAYHITNPDVYFLCQCTYYLACFHFLSEWLL 100
Query: 92 YQTMAIGNLTTVGIFAGTSIIWMLLQWNA 120
++T +G I T IW + + A
Sbjct: 101 FRTTNLGPGLLSPIVVSTVSIWFMAKEKA 129
>sp|P40030|ERG28_YEAST Ergosterol biosynthetic protein 28 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ERG28 PE=1 SV=1
Length = 148
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 37 TTMTEVHGRTFGIWTLLTCTLCFLCAFNLENRPLYWATFLSFIYAFGHFLTEYLIYQTMA 96
T T + RTFG WT ++C + F A L ++ F+S++ A HF +E LI++T
Sbjct: 58 TETTHLSARTFGTWTFISCVIRFYGAMYLNEPHIFELVFMSYMVALFHFGSELLIFRTCK 117
Query: 97 IGN-LTTVGIFAGTSIIWMLLQ 117
+G + + TS++WM Q
Sbjct: 118 LGKGFMGPLVVSTTSLVWMYKQ 139
>sp|A5V4L0|MURA_SPHWW UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Sphingomonas
wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=murA
PE=3 SV=1
Length = 427
Score = 32.3 bits (72), Expect = 0.98, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 51 TLLTCTLCFLCAFNLENRPLYWATFLSFIYAFGHFLTEYLIYQTMAIGNLTTVG 104
TLL C+L L N P L+ + +FGH L E + TM+ GN T+G
Sbjct: 27 TLLPCSLLTAERLTLTNLPR-----LADVDSFGHLLNELGVSTTMSRGNGETIG 75
>sp|D3Z5T1|CCD78_MOUSE Coiled-coil domain-containing protein 78 OS=Mus musculus GN=Ccdc78
PE=3 SV=2
Length = 437
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 52 LLTCTLCFLCAFNLENRPLYWATFLS 77
L TC F A NLE P++WAT LS
Sbjct: 290 LTTCRATFATAINLEPLPMHWATELS 315
>sp|Q0WUC5|ALB33_ARATH ALBINO3-like protein 3, mitochondrial OS=Arabidopsis thaliana
GN=ALB3L3 PE=2 SV=1
Length = 566
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 28/61 (45%)
Query: 52 LLTCTLCFLCAFNLENRPLYWATFLSFIYAFGHFLTEYLIYQTMAIGNLTTVGIFAGTSI 111
LLTC L FL + LYWAT LSF A L ++ + + +V AG I
Sbjct: 301 LLTCALYFLSFQMPQGSLLYWATNLSFSIAQQSILNHPVVSAKLGLQANDSVQKEAGNPI 360
Query: 112 I 112
+
Sbjct: 361 L 361
>sp|Q9E6N7|UL32_GAHVM Packaging protein UL32 homolog OS=Gallid herpesvirus 2 (strain
Chicken/Md5/ATCC VR-987) GN=MDV046 PE=3 SV=1
Length = 641
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 41 EVHGRTFGIWTLLTCTLCFLCAFNLENRPLYWATFLS---FIYAFG-HFLTEY 89
+++ R FG+ L FLC+ L + P ATF++ F+Y HFL+++
Sbjct: 108 DMYRRNFGLSALWMADYAFLCSKCLGSPPCATATFIAAFEFVYIMDKHFLSDH 160
>sp|E0VSP9|GATA_PEDHC Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial
OS=Pediculus humanus subsp. corporis GN=gatA PE=3 SV=1
Length = 496
Score = 28.9 bits (63), Expect = 8.5, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 51 TLLTCTLCFLCAFNLENRPLYWATFLSFIYAFGHFLTEYLIYQTMAIGNLTTVGIFAGTS 110
TL TC L F RP Y AT + + G L A+G+ TT IF T
Sbjct: 83 TLTTCGSKMLQNF----RPKYTATVVQKLLDSGAILVGKTNMDEFAMGSGTTTSIFGPTK 138
Query: 111 IIW 113
IW
Sbjct: 139 NIW 141
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.333 0.141 0.500
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,575,616
Number of Sequences: 539616
Number of extensions: 1618478
Number of successful extensions: 5388
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 5370
Number of HSP's gapped (non-prelim): 25
length of query: 129
length of database: 191,569,459
effective HSP length: 95
effective length of query: 34
effective length of database: 140,305,939
effective search space: 4770401926
effective search space used: 4770401926
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 55 (25.8 bits)