Query 032986
Match_columns 129
No_of_seqs 104 out of 132
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 08:23:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032986.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032986hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03694 Erg28: Erg28 like pro 100.0 4.5E-52 9.7E-57 303.8 11.0 108 1-109 1-111 (111)
2 KOG3455 Predicted membrane pro 100.0 8.5E-44 1.8E-48 268.2 10.8 124 1-124 5-132 (139)
3 PF14936 p53-inducible11: Tumo 89.3 9.9 0.00021 30.4 11.0 121 4-128 53-179 (179)
4 CHL00031 psbT photosystem II p 60.6 7.9 0.00017 23.1 1.9 30 1-30 1-30 (33)
5 PRK11875 psbT photosystem II r 54.8 13 0.00029 21.8 2.2 29 1-29 1-29 (31)
6 PF01405 PsbT: Photosystem II 43.1 38 0.00083 19.6 2.8 28 1-28 1-28 (29)
7 COG4858 Uncharacterized membra 39.8 1.9E+02 0.004 23.9 7.3 101 7-116 101-208 (226)
8 PF14248 DUF4345: Domain of un 38.9 1.4E+02 0.0031 21.2 9.6 87 3-90 3-95 (124)
9 PF03729 DUF308: Short repeat 27.3 1.5E+02 0.0033 18.0 7.3 43 12-64 3-45 (72)
10 PF11117 DUF2626: Protein of u 26.5 1.9E+02 0.0042 20.3 4.7 40 44-85 5-44 (80)
11 PF12676 DUF3796: Protein of u 22.8 3.1E+02 0.0068 20.1 8.0 55 39-93 55-109 (118)
12 PF04505 Dispanin: Interferon- 21.3 44 0.00095 22.9 0.7 47 11-60 33-79 (82)
No 1
>PF03694 Erg28: Erg28 like protein; InterPro: IPR005352 This is a family of integral membrane proteins, which may contain four transmembrane helices. Members of this family are thought to be involved in sterol C-4 demethylation. In Saccharomyces cerevisiae (Baker's yeast) they may tether Erg26p (sterol dehydrogenase/decarboxylase) and Erg27p (3-ketoreductase) to the endoplasmic reticulum or may facilitate interaction between these proteins []. The family contains a conserved arginine and histidine that may be functionally important.; GO: 0016021 integral to membrane
Probab=100.00 E-value=4.5e-52 Score=303.84 Aligned_cols=108 Identities=38% Similarity=0.717 Sum_probs=105.0
Q ss_pred ChhhHHHHHHHHHHHHhhhhhhhccchhHHhhhcC--CCCCCchhhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 032986 1 MKALGWWLMLVGSLRLASVWFGFFDIWALRLAVFS--NTTMTEVHGRTFGIWTLLTCTLCFLCAFNLENRPLYWATFLSF 78 (129)
Q Consensus 1 m~~Lp~WLlfVs~~~~~ns~q~y~~~~~l~~~vYs--~~~vtpL~aRtFg~WTl~s~iir~y~Ay~i~n~~lY~lt~~Tf 78 (129)
|++||+||+|||++|++|++|+|++ .++++|+|+ ++|||||+||+||+||++||+||+||||||+||++|++|+|||
T Consensus 1 ~g~Lp~WLlfVs~~~~~ns~q~y~~-~~~~~~vY~~~~~~vt~L~aRtFG~WTl~s~~ir~~~Ay~i~n~~lY~lt~~Sf 79 (111)
T PF03694_consen 1 MGYLPYWLLFVSVVSLFNSLQCYFS-LSLTRRVYSGKPKQVTPLSARTFGTWTLLSAIIRLYCAYNIHNKPLYDLTFWSF 79 (111)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhC-hHHHhhccCCCCCCCCchhhhhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 8999999999999999999999999 499999999 4799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccC-ccccchhhhhh
Q 032986 79 IYAFGHFLTEYLIYQTMAIG-NLTTVGIFAGT 109 (129)
Q Consensus 79 viAl~HF~sE~lvfkT~~~~-~~~~P~~va~~ 109 (129)
+||++||++|++||||++++ +.++|++||++
T Consensus 80 viAl~HF~sE~lvfkT~~~~~~~~~P~ivast 111 (111)
T PF03694_consen 80 VIALGHFLSEWLVFKTAKLKGGVIFPLIVAST 111 (111)
T ss_pred HHHHHHHHHHHHHhcccccCCCceeeEEEecC
Confidence 99999999999999999999 79999999985
No 2
>KOG3455 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=8.5e-44 Score=268.18 Aligned_cols=124 Identities=44% Similarity=0.767 Sum_probs=119.4
Q ss_pred ChhhHHHHHHHHHHHHhhhhhhhccchhHHhhhcC-CCCCCchhhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 032986 1 MKALGWWLMLVGSLRLASVWFGFFDIWALRLAVFS-NTTMTEVHGRTFGIWTLLTCTLCFLCAFNLENRPLYWATFLSFI 79 (129)
Q Consensus 1 m~~Lp~WLlfVs~~~~~ns~q~y~~~~~l~~~vYs-~~~vtpL~aRtFg~WTl~s~iir~y~Ay~i~n~~lY~lt~~Tfv 79 (129)
+.++|+|++|||+.+++|++|+|++.+++++++|+ +++++.|+|||||+||+++||+|++||+||+||++|.++++||.
T Consensus 5 l~alr~Wl~~Vsv~algn~~qsy~~~~~l~~~vyt~~~e~~~l~~RtfGiwtlLscilrf~ca~~i~nk~i~~~~~~s~~ 84 (139)
T KOG3455|consen 5 LAALRKWLVFVSVQALGNVWQSYAKRRQLTAKVYTSPTEVNGLSARTFGIWTLLSCILRFLCAFYIHNKPIYIATFLSFI 84 (139)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCcccchhhhHHHHHHHHHHHHHHHHheeecCCCchHHHHHHHHH
Confidence 35799999999999999999999998899999999 58999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccC-ccccchhhhhhHHHHHHH--hhhhhccc
Q 032986 80 YAFGHFLTEYLIYQTMAIG-NLTTVGIFAGTSIIWMLL--QWNARQQV 124 (129)
Q Consensus 80 iAl~HF~sE~lvfkT~~~~-~~~~P~~va~~sliWM~~--q~~~y~~~ 124 (129)
+|++||++|+|+|+|++++ +.++|++++++|++||+. ++..+.++
T Consensus 85 lal~HflTE~l~yrT~tig~~~~~p~vv~s~Sl~~M~~~l~~~~~~~~ 132 (139)
T KOG3455|consen 85 LALGHFLTELLFYRTMTIGIGVLTPLVVNSISLVGMLKFLLRLSFKGV 132 (139)
T ss_pred HHHHHHHHHHHHHhhccccceEEeeeeehhhhHHHHHHHHcchhccCc
Confidence 9999999999999999999 899999999999999999 99998765
No 3
>PF14936 p53-inducible11: Tumour protein p53-inducible protein 11
Probab=89.27 E-value=9.9 Score=30.40 Aligned_cols=121 Identities=15% Similarity=0.151 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHhhhhhhhccchhHHhhhcCCCC-CCchhhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 032986 4 LGWWLMLVGSLRLASVWFGFFDIWALRLAVFSNTT-MTEVHGRTFGIWTLLTCTLCFLCAFNLENRPLYWATFLSFIYAF 82 (129)
Q Consensus 4 Lp~WLlfVs~~~~~ns~q~y~~~~~l~~~vYs~~~-vtpL~aRtFg~WTl~s~iir~y~Ay~i~n~~lY~lt~~TfviAl 82 (129)
|+-|..+.++.-.+-+..+.+-|..+...+++.++ .+-+..|.+|.=-+-=+.|--.+.|.-+ |..-..+.++ -.
T Consensus 53 Lr~Wq~~sa~~f~~~~~m~L~FP~~~~~~vf~~~~~~s~~~vRlyGgAL~s~aLi~w~~l~t~e-k~iIrwtLL~---ea 128 (179)
T PF14936_consen 53 LRLWQFLSAVYFTLVALMALVFPDQLYDHVFEEEPVTSKLPVRLYGGALLSIALIFWNALYTAE-KAIIRWTLLS---EA 128 (179)
T ss_pred hhHHHHHHHHHHHHHHHHHHHccHHHHHhhcccccccceeeehhhhHHHHHHHHHHHHHHhHHH-HHHHHHHHHH---HH
Confidence 67899998888888888888888778888888544 4668889999865555555555554444 6665544443 23
Q ss_pred HHHHHHHHH----HhhcccCccccchhhhhhHHHHHHHhhhhh-cccCCCC
Q 032986 83 GHFLTEYLI----YQTMAIGNLTTVGIFAGTSIIWMLLQWNAR-QQVHPKD 128 (129)
Q Consensus 83 ~HF~sE~lv----fkT~~~~~~~~P~~va~~sliWM~~q~~~y-~~~~~~~ 128 (129)
.+|..+.+| ...+...+...++...+-.+.-+..-+=|| +|++|+.
T Consensus 129 ~y~~vq~~vtt~t~~e~~~~s~~~~llLisr~lf~liS~yyYy~~gr~pkk 179 (179)
T PF14936_consen 129 CYFGVQFLVTTATLAEMGWLSNAALLLLISRLLFALISMYYYYQLGRRPKK 179 (179)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 334444433 222222233336777777777777777777 8888863
No 4
>CHL00031 psbT photosystem II protein T
Probab=60.55 E-value=7.9 Score=23.09 Aligned_cols=30 Identities=23% Similarity=0.193 Sum_probs=25.8
Q ss_pred ChhhHHHHHHHHHHHHhhhhhhhccchhHH
Q 032986 1 MKALGWWLMLVGSLRLASVWFGFFDIWALR 30 (129)
Q Consensus 1 m~~Lp~WLlfVs~~~~~ns~q~y~~~~~l~ 30 (129)
||++-+=+++++.+.+......|.+|.+..
T Consensus 1 MEalvYtfll~~tlgilFFAI~FRePPri~ 30 (33)
T CHL00031 1 MEALVYTFLLVSTLGIIFFAIFFREPPKVP 30 (33)
T ss_pred CchhHHHHHHHHHHHHHHHhheecCCCCCC
Confidence 899999999999999988888888876543
No 5
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=54.83 E-value=13 Score=21.82 Aligned_cols=29 Identities=21% Similarity=0.193 Sum_probs=24.7
Q ss_pred ChhhHHHHHHHHHHHHhhhhhhhccchhH
Q 032986 1 MKALGWWLMLVGSLRLASVWFGFFDIWAL 29 (129)
Q Consensus 1 m~~Lp~WLlfVs~~~~~ns~q~y~~~~~l 29 (129)
||+|-+=+++++.+.+.-....|.+|.+.
T Consensus 1 MEal~Ytfll~~tlgiiFFAIfFRepPri 29 (31)
T PRK11875 1 MESFAYILILTLALVTLFFAIAFRDPPKI 29 (31)
T ss_pred ChhHHHHHHHHHHHHHHHHhhhccCCCCC
Confidence 89999999999999988887888877543
No 6
>PF01405 PsbT: Photosystem II reaction centre T protein; InterPro: IPR001743 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbT found in PSII, which is thought to be associated with the D1 (PsbA) - D2 (PsbD) heterodimer. PsbT may be involved in the formation and/or stabilisation of dimeric PSII complexes, because in the absence of this protein dimeric PSII complexes were found to be less abundant. Furthermore, although PsbT does not confer photo-protection, it is required for the efficient recovery of photo-damaged PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3BZ1_T 1S5L_t 2AXT_t 3KZI_T 3PRQ_T 3BZ2_T 3PRR_T 4FBY_g 3A0H_t 3A0B_T ....
Probab=43.06 E-value=38 Score=19.63 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=20.6
Q ss_pred ChhhHHHHHHHHHHHHhhhhhhhccchh
Q 032986 1 MKALGWWLMLVGSLRLASVWFGFFDIWA 28 (129)
Q Consensus 1 m~~Lp~WLlfVs~~~~~ns~q~y~~~~~ 28 (129)
||++-+=+++++.+.+.-....|.+|.+
T Consensus 1 MEa~vY~~ll~~tlgilffAI~FRePPr 28 (29)
T PF01405_consen 1 MEALVYTFLLIGTLGILFFAIFFREPPR 28 (29)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHSS----
T ss_pred CchhHHHHHHHHHHHHHHhhhhccCCCC
Confidence 8999999999999998888777877643
No 7
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=39.79 E-value=1.9e+02 Score=23.92 Aligned_cols=101 Identities=9% Similarity=0.084 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhhhhhhhccchhHHhhhcCCCCCCchhhh-------HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 032986 7 WLMLVGSLRLASVWFGFFDIWALRLAVFSNTTMTEVHGR-------TFGIWTLLTCTLCFLCAFNLENRPLYWATFLSFI 79 (129)
Q Consensus 7 WLlfVs~~~~~ns~q~y~~~~~l~~~vYs~~~vtpL~aR-------tFg~WTl~s~iir~y~Ay~i~n~~lY~lt~~Tfv 79 (129)
=|+|.|++++.|++.+|++. . ..+|. |..- -|..+-..--+-|.++-=.-.-+..=.+...+-+
T Consensus 101 sLl~lg~~aLlsgitaff~~-n--A~~~G------lItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~~K~~lv~~~s 171 (226)
T COG4858 101 SLLFLGAMALLSGITAFFQK-N--AQVYG------LITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTWKYLLVAVLS 171 (226)
T ss_pred cHHHHHHHHHHHHHHHHHhc-C--Ccchh------HHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCchHHHHHHHHHH
Confidence 37999999999999999986 2 34442 2211 1112221112222222000001112223334444
Q ss_pred HHHHHHHHHHHHHhhcccCccccchhhhhhHHHHHHH
Q 032986 80 YAFGHFLTEYLIYQTMAIGNLTTVGIFAGTSIIWMLL 116 (129)
Q Consensus 80 iAl~HF~sE~lvfkT~~~~~~~~P~~va~~sliWM~~ 116 (129)
+++.-++.-.-+|=-.+++.+++|+....++.+-..+
T Consensus 172 m~lWi~v~i~t~~lPtslN~~L~pi~l~IiGav~lal 208 (226)
T COG4858 172 MLLWIAVMIATVFLPTSLNPQLPPIALTIIGAVILAL 208 (226)
T ss_pred HHHHHHHHHHHhhCCCcCCcCCchHHHHHHHHHHHHH
Confidence 5555555544444455666799999888877765443
No 8
>PF14248 DUF4345: Domain of unknown function (DUF4345)
Probab=38.95 E-value=1.4e+02 Score=21.22 Aligned_cols=87 Identities=18% Similarity=0.121 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHHHHhhhhhhhccchhHHhhhcCCCCCCc----hhhhHHHHHHHHHHHHHHHhhcCCCCh--HHHHHHHH
Q 032986 3 ALGWWLMLVGSLRLASVWFGFFDIWALRLAVFSNTTMTE----VHGRTFGIWTLLTCTLCFLCAFNLENR--PLYWATFL 76 (129)
Q Consensus 3 ~Lp~WLlfVs~~~~~ns~q~y~~~~~l~~~vYs~~~vtp----L~aRtFg~WTl~s~iir~y~Ay~i~n~--~lY~lt~~ 76 (129)
.++..|.+.+++-+.-+....++|.+ +-..+.....++ -.-|.+|-=-+.-++..++++.+++.+ .+.-++..
T Consensus 3 ~~~~~l~~~~l~~~~~Gl~~~~~p~~-~~~~~~~~~~~~~~~~s~~R~~~G~~~g~Gl~~l~~~~~~~~~~~al~~l~~~ 81 (124)
T PF14248_consen 3 ILRIFLILSALVFIGIGLAYFLAPSS-TAPWFGGVLANAAALDSEFRAYGGLYLGLGLLLLWAAFKPEYRRPALRLLALF 81 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHH-HHhhcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHH
Confidence 35677888888889999999999844 444444222222 445666665577789999999998665 47777778
Q ss_pred HHHHHHHHHHHHHH
Q 032986 77 SFIYAFGHFLTEYL 90 (129)
Q Consensus 77 TfviAl~HF~sE~l 90 (129)
-...+++-.+|=..
T Consensus 82 ~~~~~lgRlis~~~ 95 (124)
T PF14248_consen 82 IGGGGLGRLISLAL 95 (124)
T ss_pred HHHHHHHHHHHHHH
Confidence 88889999888643
No 9
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=27.27 E-value=1.5e+02 Score=18.05 Aligned_cols=43 Identities=21% Similarity=0.386 Sum_probs=30.4
Q ss_pred HHHHHhhhhhhhccchhHHhhhcCCCCCCchhhhHHHHHHHHHHHHHHHhhcC
Q 032986 12 GSLRLASVWFGFFDIWALRLAVFSNTTMTEVHGRTFGIWTLLTCTLCFLCAFN 64 (129)
Q Consensus 12 s~~~~~ns~q~y~~~~~l~~~vYs~~~vtpL~aRtFg~WTl~s~iir~y~Ay~ 64 (129)
|++.+.-++-+...| .... ...+..+|.|.+.+++.++..+++
T Consensus 3 Gil~iv~Gi~~l~~p-~~~~---------~~~~~i~g~~~i~~Gi~~l~~~~~ 45 (72)
T PF03729_consen 3 GILFIVLGILLLFNP-DASL---------AALAIILGIWLIISGIFQLISAFR 45 (72)
T ss_pred HHHHHHHHHHHHHhH-HHHH---------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555 2222 234789999999999999999999
No 10
>PF11117 DUF2626: Protein of unknown function (DUF2626); InterPro: IPR020254 This entry contains proteins with no known function.
Probab=26.52 E-value=1.9e+02 Score=20.32 Aligned_cols=40 Identities=18% Similarity=0.379 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHH
Q 032986 44 GRTFGIWTLLTCTLCFLCAFNLENRPLYWATFLSFIYAFGHF 85 (129)
Q Consensus 44 aRtFg~WTl~s~iir~y~Ay~i~n~~lY~lt~~TfviAl~HF 85 (129)
=|..|-||.+-++.-..+ ++.+-++-..+.-.+.++|++.
T Consensus 5 fRVlgFWT~i~avm~~~G--~m~~~aLlF~~qT~~F~~LgYl 44 (80)
T PF11117_consen 5 FRVLGFWTGIFAVMFYAG--DMIEMALLFFAQTAFFVLLGYL 44 (80)
T ss_pred HHHHHHHHHHHHHHHHHc--chHHHHHHHHHHHHHHHHHHHH
Confidence 378899999988887666 5556666666666777777765
No 11
>PF12676 DUF3796: Protein of unknown function (DUF3796); InterPro: IPR024257 This family of proteins is functionally uncharacterised. This family of proteins is found in bacteria. Proteins in this family are approximately 120 amino acids in length.
Probab=22.83 E-value=3.1e+02 Score=20.08 Aligned_cols=55 Identities=16% Similarity=0.217 Sum_probs=42.0
Q ss_pred CCchhhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032986 39 MTEVHGRTFGIWTLLTCTLCFLCAFNLENRPLYWATFLSFIYAFGHFLTEYLIYQ 93 (129)
Q Consensus 39 vtpL~aRtFg~WTl~s~iir~y~Ay~i~n~~lY~lt~~TfviAl~HF~sE~lvfk 93 (129)
++-=++|.|.+=....+++-+...+.-+..-+--+-.+++++++.=|..+.++|+
T Consensus 55 ~~kAa~~af~v~l~~~~ii~l~~~i~~~~~~~~~~i~i~~~i~l~vf~~~~~~ye 109 (118)
T PF12676_consen 55 VRKAASRAFFVALILLFIILLISMIFDNLELITILIAIAFAIALLVFAISYLYYE 109 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666788888777778888888855554444456667899999999999999886
No 12
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=21.28 E-value=44 Score=22.86 Aligned_cols=47 Identities=4% Similarity=0.110 Sum_probs=30.2
Q ss_pred HHHHHHhhhhhhhccchhHHhhhcCCCCCCchhhhHHHHHHHHHHHHHHH
Q 032986 11 VGSLRLASVWFGFFDIWALRLAVFSNTTMTEVHGRTFGIWTLLTCTLCFL 60 (129)
Q Consensus 11 Vs~~~~~ns~q~y~~~~~l~~~vYs~~~vtpL~aRtFg~WTl~s~iir~y 60 (129)
+|++++.+|.| .++ +..++.|+..+-..-.+|.++.+.+.-+++.+.
T Consensus 33 lGi~Ai~~s~k--v~~-~~~~Gd~~~A~~aS~~Ak~~~~ia~~~g~~~~i 79 (82)
T PF04505_consen 33 LGIVAIVYSSK--VRS-RYAAGDYEGARRASRKAKKWSIIAIIIGIVIII 79 (82)
T ss_pred HHHHHheechh--hHH-HHHCCCHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 57777777766 232 344555543344556688899888888877653
Done!