Query 032986
Match_columns 129
No_of_seqs 104 out of 132
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 13:34:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032986.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032986hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_T Photosystem II reaction 53.9 9.2 0.00031 21.8 2.2 29 1-29 1-29 (32)
2 2kix_A BM2 protein; channel, t 14.1 1.6E+02 0.0053 16.5 2.6 18 70-87 5-22 (33)
3 2jxf_A NS4B(40-69), genome pol 7.2 2E+02 0.0067 15.9 1.3 11 49-59 15-25 (30)
4 2qzg_A Conserved uncharacteriz 6.7 3E+02 0.01 18.9 2.4 21 35-56 69-89 (94)
5 2igp_A Retinoblastoma-associat 6.0 2.6E+02 0.009 19.3 1.9 34 60-93 83-119 (120)
6 3pev_B Nucleoporin GLE1; RECA, 5.6 2.1E+02 0.007 23.0 1.2 14 53-66 177-190 (297)
7 2qsb_A UPF0147 protein TA0600; 5.4 3.1E+02 0.011 18.6 1.8 20 36-56 66-85 (89)
8 2khf_A PLNJ; anti-microbial, b 5.3 91 0.0031 16.6 -0.7 15 112-126 6-20 (26)
9 3ajf_A Non-structural protein 4.3 2.8E+02 0.0097 18.9 1.0 12 108-119 56-67 (94)
10 4ggd_C Mitotic checkpoint seri 4.1 2.7E+02 0.0091 14.7 0.6 13 36-48 7-20 (26)
No 1
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=53.92 E-value=9.2 Score=21.83 Aligned_cols=29 Identities=10% Similarity=0.078 Sum_probs=24.6
Q ss_pred ChhhHHHHHHHHHHHHhhhhhhhccchhH
Q 032986 1 MKALGWWLMLVGSLRLASVWFGFFDIWAL 29 (129)
Q Consensus 1 m~~Lp~WLlfVs~~~~~ns~q~y~~~~~l 29 (129)
||++-+=+++++.+.+.-....|.+|.+.
T Consensus 1 MEa~vYt~ll~~tlgiiFFAI~FRePPri 29 (32)
T 3arc_T 1 METITYVFIFACIIALFFFAIFFREPPRI 29 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTSCCCCC
T ss_pred CchHHHHHHHHHHHHHHHHhhhhcCCCCC
Confidence 89999999999999998877788777554
No 2
>2kix_A BM2 protein; channel, transport protein; NMR {Influenza b virus}
Probab=14.07 E-value=1.6e+02 Score=16.48 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032986 70 LYWATFLSFIYAFGHFLT 87 (129)
Q Consensus 70 lY~lt~~TfviAl~HF~s 87 (129)
+--+.+.||.+...||+.
T Consensus 5 ~qilsi~sfilsalhf~a 22 (33)
T 2kix_A 5 FQILSISSFILSALHFIA 22 (33)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344678899999999974
No 3
>2jxf_A NS4B(40-69), genome polyprotein; membrane associated segment, acetylation, apoptosis, ATP- binding, capsid protein, cytoplasm, endoplasmic reticulum; NMR {Synthetic}
Probab=7.24 E-value=2e+02 Score=15.94 Aligned_cols=11 Identities=9% Similarity=0.631 Sum_probs=8.3
Q ss_pred HHHHHHHHHHH
Q 032986 49 IWTLLTCTLCF 59 (129)
Q Consensus 49 ~WTl~s~iir~ 59 (129)
+|.|+|+|--+
T Consensus 15 MwNfvSGIQYL 25 (30)
T 2jxf_A 15 MWNFISGIQYL 25 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 68999987544
No 4
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=6.73 E-value=3e+02 Score=18.90 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=16.3
Q ss_pred CCCCCCchhhhHHHHHHHHHHH
Q 032986 35 SNTTMTEVHGRTFGIWTLLTCT 56 (129)
Q Consensus 35 s~~~vtpL~aRtFg~WTl~s~i 56 (129)
|+|+--|+++||- +|.++|-.
T Consensus 69 SnDPNmP~htRT~-IW~ivS~L 89 (94)
T 2qzg_A 69 SEDPNMPIHTRTQ-IWGIVSEL 89 (94)
T ss_dssp TTCTTCCHHHHHH-HHHHHHHH
T ss_pred hcCCCCChHHHHH-HHHHHHHH
Confidence 3577899999994 89887743
No 5
>2igp_A Retinoblastoma-associated protein HEC; calponin homology (CH) domain, alpha helices, cell cycle; 1.80A {Homo sapiens}
Probab=6.04 E-value=2.6e+02 Score=19.29 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=26.0
Q ss_pred HhhcCCCChHHHHHHH---HHHHHHHHHHHHHHHHHh
Q 032986 60 LCAFNLENRPLYWATF---LSFIYAFGHFLTEYLIYQ 93 (129)
Q Consensus 60 y~Ay~i~n~~lY~lt~---~TfviAl~HF~sE~lvfk 93 (129)
=.-|.|+...+...+- |-.+++..|.+.|+..|+
T Consensus 83 ~YP~~isKS~L~a~g~pHsWp~~L~~L~WLvel~~~~ 119 (120)
T 2igp_A 83 GYPFALSKSSMYTVGAPHTWPHIVAALVWLIDCIKIH 119 (120)
T ss_dssp TCCSCCCHHHHHTTTSTTTHHHHHHHHHHHHHHHHHC
T ss_pred CCCceeCHHHhcCCCCCccHHHHHHHHHHHHHHHHhh
Confidence 3455677777777754 889999999999988764
No 6
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B*
Probab=5.64 E-value=2.1e+02 Score=22.99 Aligned_cols=14 Identities=7% Similarity=0.083 Sum_probs=9.2
Q ss_pred HHHHHHHHhhcCCC
Q 032986 53 LTCTLCFLCAFNLE 66 (129)
Q Consensus 53 ~s~iir~y~Ay~i~ 66 (129)
++|++|+|+|.-..
T Consensus 177 m~Gi~~lyAAI~~~ 190 (297)
T 3pev_B 177 MGGILSLFAIITRL 190 (297)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhC
Confidence 46677777777543
No 7
>2qsb_A UPF0147 protein TA0600; structural genomics, four-helix bundle, PSI-2, protein structure initiative; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728} SCOP: a.29.14.1
Probab=5.38 E-value=3.1e+02 Score=18.63 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=15.9
Q ss_pred CCCCCchhhhHHHHHHHHHHH
Q 032986 36 NTTMTEVHGRTFGIWTLLTCT 56 (129)
Q Consensus 36 ~~~vtpL~aRtFg~WTl~s~i 56 (129)
+++--|+++||- +|.++|-.
T Consensus 66 nDPNmP~h~RT~-IW~ivS~L 85 (89)
T 2qsb_A 66 NDPNVPAHGRTD-LYTIISKL 85 (89)
T ss_dssp TCTTSCHHHHHH-HHHHHHHH
T ss_pred cCCCCChHHHHH-HHHHHHHH
Confidence 577899999994 78887743
No 8
>2khf_A PLNJ; anti-microbial, bacteriocin, peptide, two-peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2khg_A
Probab=5.31 E-value=91 Score=16.57 Aligned_cols=15 Identities=13% Similarity=0.127 Sum_probs=11.4
Q ss_pred HHHHHhhhhhcccCC
Q 032986 112 IWMLLQWNARQQVHP 126 (129)
Q Consensus 112 iWM~~q~~~y~~~~~ 126 (129)
.|..+.++||-+.-|
T Consensus 6 fwsslrkgfydgeag 20 (26)
T 2khf_A 6 FWSSLRKGFYDGEAG 20 (26)
T ss_dssp HHHHHHHHHTTTHHH
T ss_pred HHHHHHhhcccchhh
Confidence 588899999966533
No 9
>3ajf_A Non-structural protein 3; RNA silencing suppression, negative strand RNA virus, viral; 2.00A {Rice hoja blanca virus}
Probab=4.35 E-value=2.8e+02 Score=18.91 Aligned_cols=12 Identities=42% Similarity=0.543 Sum_probs=9.0
Q ss_pred hhHHHHHHHhhh
Q 032986 108 GTSIIWMLLQWN 119 (129)
Q Consensus 108 ~~sliWM~~q~~ 119 (129)
.-++|||+....
T Consensus 56 Lkt~IWiLsHdr 67 (94)
T 3ajf_A 56 LKSAIWMLSHKR 67 (94)
T ss_dssp HHHHHHHHHTCT
T ss_pred HHHHHHHhhcCC
Confidence 358999998754
No 10
>4ggd_C Mitotic checkpoint serine/threonine-protein kinas beta; cell cycle, mitosis, securin, ubiquitination, WD40; 2.44A {Homo sapiens}
Probab=4.05 E-value=2.7e+02 Score=14.74 Aligned_cols=13 Identities=15% Similarity=0.463 Sum_probs=7.1
Q ss_pred CCCCCch-hhhHHH
Q 032986 36 NTTMTEV-HGRTFG 48 (129)
Q Consensus 36 ~~~vtpL-~aRtFg 48 (129)
++.|.|| ++|...
T Consensus 7 kenvqplrqgrim~ 20 (26)
T 4ggd_C 7 KENVQPLRQGRIMS 20 (26)
T ss_pred hhccchhhccchhh
Confidence 3456665 456554
Done!