Query 032986
Match_columns 129
No_of_seqs 104 out of 132
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 13:34:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032986.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032986hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtt1 f.23.34.1 (T:1-30) Pho 7.6 1.4E+02 0.011 14.9 2.2 26 1-26 1-26 (30)
2 d1zk8a2 a.121.1.1 (A:78-182) T 5.8 60 0.0044 19.4 0.1 22 54-75 8-29 (105)
3 d2oi8a2 a.121.1.1 (A:87-216) P 5.5 1E+02 0.0075 19.3 1.1 23 54-76 4-26 (130)
4 d1fftc_ f.25.1.1 (C:) Cytochro 5.2 1E+02 0.0073 20.5 1.0 16 42-57 4-19 (185)
5 d1wnaa1 d.319.1.1 (A:1-127) Hy 3.7 1.1E+02 0.0078 20.5 0.1 16 56-71 111-126 (127)
6 d2je8a5 c.1.8.3 (A:331-678) Fi 3.5 1E+02 0.0075 20.9 -0.2 19 56-74 61-79 (348)
7 d2axtz1 f.17.5.1 (Z:1-62) Phot 3.4 3.1E+02 0.022 15.9 2.1 16 5-20 45-60 (62)
8 d1oyia_ a.4.5.19 (A:) dsRNA-bi 2.9 1.8E+02 0.013 16.8 0.5 8 67-74 36-43 (62)
9 d2fyga1 g.86.1.1 (A:6-128) Non 2.8 98 0.0072 20.6 -0.9 17 55-71 66-82 (123)
10 d2pxrc1 a.73.1.1 (C:1-145) HIV 2.8 2.3E+02 0.017 19.1 1.1 13 39-51 12-24 (145)
No 1
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.59 E-value=1.4e+02 Score=14.94 Aligned_cols=26 Identities=12% Similarity=0.123 Sum_probs=17.0
Q ss_pred ChhhHHHHHHHHHHHHhhhhhhhccc
Q 032986 1 MKALGWWLMLVGSLRLASVWFGFFDI 26 (129)
Q Consensus 1 m~~Lp~WLlfVs~~~~~ns~q~y~~~ 26 (129)
||...+=+.|--+++++--..-|.+|
T Consensus 1 me~i~yv~ifac~i~lfffaiffrep 26 (30)
T d2axtt1 1 METITYVFIFACIIALFFFAIFFREP 26 (30)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred CceeehHHHHHHHHHHHHHHHHhcCC
Confidence 67777777777777776554444444
No 2
>d1zk8a2 a.121.1.1 (A:78-182) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]}
Probab=5.83 E-value=60 Score=19.37 Aligned_cols=22 Identities=32% Similarity=0.206 Sum_probs=16.3
Q ss_pred HHHHHHHhhcCCCChHHHHHHH
Q 032986 54 TCTLCFLCAFNLENRPLYWATF 75 (129)
Q Consensus 54 s~iir~y~Ay~i~n~~lY~lt~ 75 (129)
.++.+-|--|=++||.+|++.+
T Consensus 8 ~al~~aY~~FA~~~P~~y~lmf 29 (105)
T d1zk8a2 8 HALGEAYVAFVRKHPGLYEATF 29 (105)
T ss_dssp HHHHHHHHHHHHHCHHHHHHTT
T ss_pred HHHHHHHHHHHHHChHHHHHHh
Confidence 4566777777788888888765
No 3
>d2oi8a2 a.121.1.1 (A:87-216) Putative regulatory protein Sco4313 {Streptomyces coelicolor [TaxId: 1902]}
Probab=5.47 E-value=1e+02 Score=19.26 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=19.3
Q ss_pred HHHHHHHhhcCCCChHHHHHHHH
Q 032986 54 TCTLCFLCAFNLENRPLYWATFL 76 (129)
Q Consensus 54 s~iir~y~Ay~i~n~~lY~lt~~ 76 (129)
-++.|-|-.|=++||..|.+-+.
T Consensus 4 ~a~~~Ayr~wAl~~P~~Y~LmFg 26 (130)
T d2oi8a2 4 AGLAHALRAWALDDPQRYFLIFG 26 (130)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCchheehhcc
Confidence 46888999999999999997664
No 4
>d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III {Escherichia coli [TaxId: 562]}
Probab=5.24 E-value=1e+02 Score=20.54 Aligned_cols=16 Identities=25% Similarity=0.553 Sum_probs=12.5
Q ss_pred hhhhHHHHHHHHHHHH
Q 032986 42 VHGRTFGIWTLLTCTL 57 (129)
Q Consensus 42 L~aRtFg~WTl~s~ii 57 (129)
-..|.||.|.++.+-+
T Consensus 4 ~~~~~~G~w~Fi~se~ 19 (185)
T d1fftc_ 4 GGTKIFGFWIYLMSDC 19 (185)
T ss_dssp TTHHHHHHHTTHHHHT
T ss_pred CCCcchhHHHHHHHHH
Confidence 3579999999887753
No 5
>d1wnaa1 d.319.1.1 (A:1-127) Hypothetical protein TTHA1528 (TT1805) {Thermus thermophilus [TaxId: 274]}
Probab=3.74 E-value=1.1e+02 Score=20.48 Aligned_cols=16 Identities=13% Similarity=0.135 Sum_probs=12.9
Q ss_pred HHHHHhhcCCCChHHH
Q 032986 56 TLCFLCAFNLENRPLY 71 (129)
Q Consensus 56 iir~y~Ay~i~n~~lY 71 (129)
+-|+.++=|+.||.+|
T Consensus 111 ~~~l~A~aNPtDP~iY 126 (127)
T d1wnaa1 111 LKRVMAIANPTDPGIY 126 (127)
T ss_dssp HHHHHHHCEECCGGGG
T ss_pred HHHHHhhcCCCCCccc
Confidence 4577788899999887
No 6
>d2je8a5 c.1.8.3 (A:331-678) Five-domain beta-mannosidase, domain 3 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=3.46 E-value=1e+02 Score=20.88 Aligned_cols=19 Identities=16% Similarity=0.046 Sum_probs=12.7
Q ss_pred HHHHHhhcCCCChHHHHHH
Q 032986 56 TLCFLCAFNLENRPLYWAT 74 (129)
Q Consensus 56 iir~y~Ay~i~n~~lY~lt 74 (129)
.||+|..-++.++.+|++|
T Consensus 61 ~IR~~~~~~~p~~~f~d~c 79 (348)
T d2je8a5 61 MVRIWGGGTYENNLFYDLA 79 (348)
T ss_dssp EEEECTTSCCCCHHHHHHH
T ss_pred EEecCCCCCCCCHHHHHHH
Confidence 4576666566677777765
No 7
>d2axtz1 f.17.5.1 (Z:1-62) Photosystem II reaction center protein Z, PsbZ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.41 E-value=3.1e+02 Score=15.92 Aligned_cols=16 Identities=25% Similarity=0.630 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhhhh
Q 032986 5 GWWLMLVGSLRLASVW 20 (129)
Q Consensus 5 p~WLlfVs~~~~~ns~ 20 (129)
.-|...|-++.+.|++
T Consensus 45 ~~W~~LV~lvgilNsf 60 (62)
T d2axtz1 45 GLWIALVLVVGVLNFF 60 (62)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhee
Confidence 4688888888888886
No 8
>d1oyia_ a.4.5.19 (A:) dsRNA-binding protein E3 (E3L) {Vaccinia virus [TaxId: 10245]}
Probab=2.87 E-value=1.8e+02 Score=16.76 Aligned_cols=8 Identities=38% Similarity=0.509 Sum_probs=5.6
Q ss_pred ChHHHHHH
Q 032986 67 NRPLYWAT 74 (129)
Q Consensus 67 n~~lY~lt 74 (129)
||.+|++.
T Consensus 36 nkalydlq 43 (62)
T d1oyia_ 36 NKALYDLQ 43 (62)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 67777764
No 9
>d2fyga1 g.86.1.1 (A:6-128) Nonstructural protein 10, NSP10 {SARS coronavirus [TaxId: 227859]}
Probab=2.81 E-value=98 Score=20.56 Aligned_cols=17 Identities=12% Similarity=0.507 Sum_probs=14.4
Q ss_pred HHHHHHhhcCCCChHHH
Q 032986 55 CTLCFLCAFNLENRPLY 71 (129)
Q Consensus 55 ~iir~y~Ay~i~n~~lY 71 (129)
+.+|+||-=||++|.+.
T Consensus 66 ASvClYCRaHi~HP~~d 82 (123)
T d2fyga1 66 ASCCLYCRCHIDHPNPK 82 (123)
T ss_dssp GGGCHHHHHTCCCSSTT
T ss_pred eeEEEEeeecCCCCCCC
Confidence 78999999999998753
No 10
>d2pxrc1 a.73.1.1 (C:1-145) HIV-1 capsid protein {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=2.78 E-value=2.3e+02 Score=19.10 Aligned_cols=13 Identities=23% Similarity=0.590 Sum_probs=11.5
Q ss_pred CCchhhhHHHHHH
Q 032986 39 MTEVHGRTFGIWT 51 (129)
Q Consensus 39 vtpL~aRtFg~WT 51 (129)
-.||+-||..+|-
T Consensus 12 hqplsPRtlnaWV 24 (145)
T d2pxrc1 12 HQAISPRTLNAWV 24 (145)
T ss_dssp ECCCCHHHHHHHH
T ss_pred eccCCHHHHHHHH
Confidence 4899999999996
Done!