BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032989
(129 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P9O|A Chain A, Structure Of Dutpase From Arabidopsis Thaliana
pdb|2P9O|B Chain B, Structure Of Dutpase From Arabidopsis Thaliana
pdb|2P9O|C Chain C, Structure Of Dutpase From Arabidopsis Thaliana
pdb|2PC5|A Chain A, Native Crystal Structure Analysis On Arabidopsis Dutpase
pdb|2PC5|B Chain B, Native Crystal Structure Analysis On Arabidopsis Dutpase
pdb|2PC5|C Chain C, Native Crystal Structure Analysis On Arabidopsis Dutpase
Length = 169
Score = 204 bits (518), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 99/114 (86%), Positives = 108/114 (94%)
Query: 16 LRSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPV 75
L SA ++KVPARGKAL+PTDLSIA+PEGTYARIAPRSGLAWKHS+DVGAGVIDADYRGPV
Sbjct: 56 LSSAVDSKVPARGKALIPTDLSIAVPEGTYARIAPRSGLAWKHSIDVGAGVIDADYRGPV 115
Query: 76 GVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 129
GVILFNHSD DF VK GDRIAQLIIEKIVTPDV+EV++LD TVRG+GGFGSTGV
Sbjct: 116 GVILFNHSDADFEVKFGDRIAQLIIEKIVTPDVVEVDDLDETVRGDGGFGSTGV 169
>pdb|3SO2|A Chain A, Chlorella Dutpase
Length = 146
Score = 159 bits (401), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 76/114 (66%), Positives = 93/114 (81%)
Query: 16 LRSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPV 75
L S +T+VPARG+A+V T L IAIP GTYAR+APRSGLA KH +D GAGV+D DYRG V
Sbjct: 31 LASCEDTEVPARGRAVVKTGLQIAIPPGTYARVAPRSGLAVKHFIDTGAGVVDEDYRGEV 90
Query: 76 GVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 129
GV+LFNH + F V+ GDR+AQLI+E+I TP+V+EVE+LD T RG GG+GSTGV
Sbjct: 91 GVVLFNHGETPFQVRRGDRVAQLILERIATPEVVEVESLDETTRGTGGYGSTGV 144
>pdb|3ECY|A Chain A, Crystal Structural Analysis Of Drosophila Melanogaster
Dutpase
pdb|3ECY|B Chain B, Crystal Structural Analysis Of Drosophila Melanogaster
Dutpase
Length = 160
Score = 155 bits (391), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 75/114 (65%), Positives = 91/114 (79%)
Query: 16 LRSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPV 75
LRSA + VPARGKA+V TDL + +PEG+Y R+APRSGLA K+ +DVGAGV+D DYRG +
Sbjct: 46 LRSAYDVVVPARGKAIVKTDLQVQVPEGSYGRVAPRSGLAVKNFIDVGAGVVDEDYRGNL 105
Query: 76 GVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 129
GV+LFNHSDVDF VK GDRIAQ I E+I P ++ V+ L+ T RGE GFGSTGV
Sbjct: 106 GVVLFNHSDVDFEVKHGDRIAQFICERIFYPQLVMVDKLEDTERGEAGFGSTGV 159
>pdb|1Q5H|A Chain A, Human Dutp Pyrophosphatase Complex With Dudp
pdb|1Q5H|B Chain B, Human Dutp Pyrophosphatase Complex With Dudp
pdb|1Q5H|C Chain C, Human Dutp Pyrophosphatase Complex With Dudp
pdb|1Q5U|X Chain X, Human Dutp Pyrophosphatase
pdb|1Q5U|Y Chain Y, Human Dutp Pyrophosphatase
pdb|1Q5U|Z Chain Z, Human Dutp Pyrophosphatase
Length = 147
Score = 138 bits (348), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 70/113 (61%), Positives = 82/113 (72%)
Query: 16 LRSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPV 75
L SA + +P KA+V TD+ IA+P G Y R+APRSGLA KH +DVGAGVID DYRG V
Sbjct: 33 LYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNV 92
Query: 76 GVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTG 128
GV+LFN F VK GDRIAQLI E+I P++ EV+ LD T RG GGFGSTG
Sbjct: 93 GVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEEVQALDDTERGSGGFGSTG 145
>pdb|2HQU|A Chain A, Human Dutpase In Complex With Alpha,Beta-Iminodutp And
Magnesium Ion
pdb|2HQU|B Chain B, Human Dutpase In Complex With Alpha,Beta-Iminodutp And
Magnesium Ion
pdb|2HQU|C Chain C, Human Dutpase In Complex With Alpha,Beta-Iminodutp And
Magnesium Ion
pdb|3EHW|A Chain A, Human Dutpase In Complex With Alpha,Beta-Imido-Dutp And
Mg2+: Visualization Of The Full-Length C-Termini In All
Monomers And Suggestion For An Additional Metal Ion
Binding Site
pdb|3EHW|B Chain B, Human Dutpase In Complex With Alpha,Beta-Imido-Dutp And
Mg2+: Visualization Of The Full-Length C-Termini In All
Monomers And Suggestion For An Additional Metal Ion
Binding Site
pdb|3EHW|C Chain C, Human Dutpase In Complex With Alpha,Beta-Imido-Dutp And
Mg2+: Visualization Of The Full-Length C-Termini In All
Monomers And Suggestion For An Additional Metal Ion
Binding Site
pdb|3EHW|X Chain X, Human Dutpase In Complex With Alpha,Beta-Imido-Dutp And
Mg2+: Visualization Of The Full-Length C-Termini In All
Monomers And Suggestion For An Additional Metal Ion
Binding Site
pdb|3EHW|Y Chain Y, Human Dutpase In Complex With Alpha,Beta-Imido-Dutp And
Mg2+: Visualization Of The Full-Length C-Termini In All
Monomers And Suggestion For An Additional Metal Ion
Binding Site
pdb|3EHW|Z Chain Z, Human Dutpase In Complex With Alpha,Beta-Imido-Dutp And
Mg2+: Visualization Of The Full-Length C-Termini In All
Monomers And Suggestion For An Additional Metal Ion
Binding Site
pdb|3ARA|A Chain A, Discovery Of Novel Uracil Derivatives As Potent Human
Dutpase Inhibitors
pdb|3ARA|B Chain B, Discovery Of Novel Uracil Derivatives As Potent Human
Dutpase Inhibitors
pdb|3ARA|C Chain C, Discovery Of Novel Uracil Derivatives As Potent Human
Dutpase Inhibitors
pdb|3ARN|A Chain A, Human Dutpase In Complex With Novel Uracil Derivative
pdb|3ARN|B Chain B, Human Dutpase In Complex With Novel Uracil Derivative
pdb|3ARN|C Chain C, Human Dutpase In Complex With Novel Uracil Derivative
Length = 164
Score = 138 bits (347), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/113 (61%), Positives = 82/113 (72%)
Query: 16 LRSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPV 75
L SA + +P KA+V TD+ IA+P G Y R+APRSGLA KH +DVGAGVID DYRG V
Sbjct: 50 LYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNV 109
Query: 76 GVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTG 128
GV+LFN F VK GDRIAQLI E+I P++ EV+ LD T RG GGFGSTG
Sbjct: 110 GVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEEVQALDDTERGSGGFGSTG 162
>pdb|3C3I|A Chain A, Evolution Of Chlorella Virus Dutpase
pdb|3C3I|B Chain B, Evolution Of Chlorella Virus Dutpase
pdb|3C3I|C Chain C, Evolution Of Chlorella Virus Dutpase
pdb|3C3I|D Chain D, Evolution Of Chlorella Virus Dutpase
Length = 141
Score = 136 bits (342), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/114 (58%), Positives = 87/114 (76%)
Query: 16 LRSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPV 75
+ S + VPA G+ V T +SI +P+GTY RIAPRSGLA+K+ +DV AGVID+DYRG V
Sbjct: 28 ISSVEDVVVPAMGRIAVSTGISIRVPDGTYGRIAPRSGLAYKYGIDVLAGVIDSDYRGEV 87
Query: 76 GVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 129
VIL+N ++ D+++K GDRIAQLI+E+IVTP V V +L T RG GGFGSTG+
Sbjct: 88 KVILYNTTERDYIIKKGDRIAQLILEQIVTPGVAVVLDLSDTARGSGGFGSTGI 141
>pdb|3CA9|A Chain A, Evolution Of Chlorella Virus Dutpase
pdb|3CA9|B Chain B, Evolution Of Chlorella Virus Dutpase
Length = 165
Score = 133 bits (334), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/114 (57%), Positives = 85/114 (74%)
Query: 16 LRSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPV 75
+ S + VPA G+ V T +SI +P+GTY RIAPRSGLA+K+ +DV AGVID DY G V
Sbjct: 44 ISSVEDVVVPAMGRIAVSTGISIRVPDGTYGRIAPRSGLAYKYGIDVLAGVIDEDYTGEV 103
Query: 76 GVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 129
VIL+N ++ D+++K GDRIAQLI+E+IVTP V V +L T RG GGFGSTG+
Sbjct: 104 KVILYNTTERDYIIKKGDRIAQLILEQIVTPGVAVVLDLSDTARGSGGFGSTGI 157
>pdb|3C2T|A Chain A, Evolution Of Chlorella Virus Dutpase
pdb|3C2T|B Chain B, Evolution Of Chlorella Virus Dutpase
Length = 141
Score = 132 bits (333), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 66/114 (57%), Positives = 85/114 (74%)
Query: 16 LRSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPV 75
+ S + VPA G+ V T +SI +P+GTY RIAPRSGLA+K+ +DV AGVID DY G V
Sbjct: 28 ISSVEDVVVPAMGRIAVSTGISIRVPDGTYGRIAPRSGLAYKYGIDVLAGVIDEDYTGEV 87
Query: 76 GVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 129
VIL+N ++ D+++K GDRIAQLI+E+IVTP V V +L T RG GGFGSTG+
Sbjct: 88 KVILYNTTERDYIIKKGDRIAQLILEQIVTPGVAVVLDLSDTARGSGGFGSTGI 141
>pdb|3P48|A Chain A, Structure Of The Yeast Dutpase Dut1 In Complex With
Dumpnpp
pdb|3P48|B Chain B, Structure Of The Yeast Dutpase Dut1 In Complex With
Dumpnpp
pdb|3P48|C Chain C, Structure Of The Yeast Dutpase Dut1 In Complex With
Dumpnpp
Length = 147
Score = 127 bits (320), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 82/112 (73%), Gaps = 1/112 (0%)
Query: 18 SAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGV 77
++ + +PA G+ +V TD+S +P GTY RIAPRSGLA K+ + GAGV+D DY G V V
Sbjct: 35 ASQDITIPAMGQGMVSTDISFTVPVGTYGRIAPRSGLAVKNGIQTGAGVVDRDYTGEVKV 94
Query: 78 ILFNHSDVDFVVKVGDRIAQLIIEKIV-TPDVLEVENLDSTVRGEGGFGSTG 128
+LFNHS DF +K GDR+AQLI+EKIV ++ V++L+ + RG GGFGSTG
Sbjct: 95 VLFNHSQRDFAIKKGDRVAQLILEKIVDDAQIVVVDSLEESARGAGGFGSTG 146
>pdb|3F4F|A Chain A, Crystal Structure Of Dut1p, A Dutpase From Saccharomyces
Cerevisiae
pdb|3F4F|B Chain B, Crystal Structure Of Dut1p, A Dutpase From Saccharomyces
Cerevisiae
pdb|3F4F|C Chain C, Crystal Structure Of Dut1p, A Dutpase From Saccharomyces
Cerevisiae
pdb|3HHQ|A Chain A, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|B Chain B, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|C Chain C, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|D Chain D, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|E Chain E, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|F Chain F, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|G Chain G, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|H Chain H, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|I Chain I, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|J Chain J, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|K Chain K, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|L Chain L, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|M Chain M, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|N Chain N, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|O Chain O, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|P Chain P, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|Q Chain Q, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|R Chain R, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|S Chain S, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|T Chain T, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|U Chain U, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|V Chain V, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|W Chain W, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|X Chain X, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
Length = 167
Score = 127 bits (319), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 82/112 (73%), Gaps = 1/112 (0%)
Query: 18 SAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGV 77
++ + +PA G+ +V TD+S +P GTY RIAPRSGLA K+ + GAGV+D DY G V V
Sbjct: 55 ASQDITIPAMGQGMVSTDISFTVPVGTYGRIAPRSGLAVKNGIQTGAGVVDRDYTGEVKV 114
Query: 78 ILFNHSDVDFVVKVGDRIAQLIIEKIV-TPDVLEVENLDSTVRGEGGFGSTG 128
+LFNHS DF +K GDR+AQLI+EKIV ++ V++L+ + RG GGFGSTG
Sbjct: 115 VLFNHSQRDFAIKKGDRVAQLILEKIVDDAQIVVVDSLEESARGAGGFGSTG 166
>pdb|2OKD|A Chain A, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OKD|B Chain B, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OKD|C Chain C, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OKE|A Chain A, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OKE|B Chain B, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OKE|C Chain C, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OL0|A Chain A, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OL0|B Chain B, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OL0|C Chain C, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OL1|A Chain A, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OL1|B Chain B, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OL1|C Chain C, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
Length = 147
Score = 121 bits (303), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/114 (52%), Positives = 82/114 (71%), Gaps = 1/114 (0%)
Query: 16 LRSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPV 75
L SA + +P + L+ TD+S+++P+ Y RIAPRSGL+ K +D+G GVID DYRG +
Sbjct: 34 LYSAYDYTIPPGERQLIKTDISMSMPKFCYGRIAPRSGLSLK-GIDIGGGVIDEDYRGNI 92
Query: 76 GVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 129
GVIL N+ F V GDRIAQLI ++I P++ EV++LDST RG+ GFGSTG+
Sbjct: 93 GVILINNGKCTFNVNTGDRIAQLIYQRIYYPELEEVQSLDSTNRGDQGFGSTGL 146
>pdb|2OKB|A Chain A, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OKB|B Chain B, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OKB|C Chain C, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
Length = 137
Score = 120 bits (302), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/114 (52%), Positives = 82/114 (71%), Gaps = 1/114 (0%)
Query: 16 LRSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPV 75
L SA + +P + L+ TD+S+++P+ Y RIAPRSGL+ K +D+G GVID DYRG +
Sbjct: 24 LYSAYDYTIPPGERQLIKTDISMSMPKFCYGRIAPRSGLSLK-GIDIGGGVIDEDYRGNI 82
Query: 76 GVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 129
GVIL N+ F V GDRIAQLI ++I P++ EV++LDST RG+ GFGSTG+
Sbjct: 83 GVILINNGKCTFNVNTGDRIAQLIYQRIYYPELEEVQSLDSTNRGDQGFGSTGL 136
>pdb|3LQW|A Chain A, Crystal Structure Of Deoxyuridine 5-Triphosphate
Nucleotidohydrolase From Entamoeba Histolytica
Length = 163
Score = 115 bits (288), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 59/98 (60%), Positives = 71/98 (72%)
Query: 31 LVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFVVK 90
LV T +S+ IP Y RIAPRS LA K+ +DVGAGVID DYRG + VILFNHS+ F +
Sbjct: 65 LVSTGVSVQIPHQCYGRIAPRSSLALKYGIDVGAGVIDEDYRGEIKVILFNHSNEIFNGR 124
Query: 91 VGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTG 128
GDRIAQLIIE+I + EV+ L++T RG GFGSTG
Sbjct: 125 KGDRIAQLIIERISYCRISEVKELNTTDRGTNGFGSTG 162
>pdb|3MBQ|A Chain A, Crystal Structure Of Deoxyuridine 5-Triphosphate
Nucleotidohydrolase From Brucella Melitensis,
Orthorhombic Crystal Form
pdb|3MBQ|B Chain B, Crystal Structure Of Deoxyuridine 5-Triphosphate
Nucleotidohydrolase From Brucella Melitensis,
Orthorhombic Crystal Form
pdb|3MBQ|C Chain C, Crystal Structure Of Deoxyuridine 5-Triphosphate
Nucleotidohydrolase From Brucella Melitensis,
Orthorhombic Crystal Form
pdb|3MDX|A Chain A, Crystal Structure Of Deoxyuridine 5-Triphosphate
Nucleotidohydrolase From Brucella Melitensis,
Rhombohedral Crystal Form
Length = 178
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 66/108 (61%), Gaps = 3/108 (2%)
Query: 24 VPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFN 81
+P R + LVPT L + IP+G +I PRSGLA+K+ + G ID+DYRG V V+L N
Sbjct: 71 LPGR-RTLVPTGLILEIPQGYEVQIRPRSGLAFKNGITCLNTPGTIDSDYRGEVKVLLIN 129
Query: 82 HSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 129
D DF ++ G RIAQ + ++ P + E + T RG GGFGSTG
Sbjct: 130 LGDDDFRIERGMRIAQAVFAPVIQPKIEERAKISETARGAGGFGSTGT 177
>pdb|1DUP|A Chain A, Deoxyuridine 5'-Triphosphate Nucleotido Hydrolase
(D-Utpase)
pdb|1EU5|A Chain A, Structure Of E. Coli Dutpase At 1.45 A
pdb|1RN8|A Chain A, Crystal Structure Of Dutpase Complexed With Substrate
Analogue Imido-Dutp
pdb|1SEH|A Chain A, Crystal Structure Of E. Coli Dutpase Complexed With The
Product Dump
pdb|1DUD|A Chain A, Deoxyuridine 5'-triphosphate Nucleotide Hydrolase
(d-utpase) Complexed With The Substrate Analogue
Deoxyuridine 5'-diphosphate (d-udp)
pdb|2HR6|A Chain A, Crystal Structure Of Dutpase In Complex With Substrate
Analogue Dudp And Manganese
pdb|2HRM|A Chain A, Crystal Structure Of Dutpase Complexed With Substrate
Analogue Methylene-Dutp
Length = 152
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 3/101 (2%)
Query: 31 LVPTDLSIAIPEGTYARIA-PRSGLAWKHSMDVG--AGVIDADYRGPVGVILFNHSDVDF 87
LVPT L+I I + + A + PRSGL KH + +G G+ID+DY+G + + ++N F
Sbjct: 50 LVPTGLAIHIADPSLAAMMLPRSGLGHKHGIVLGNLVGLIDSDYQGQLMISVWNRGQDSF 109
Query: 88 VVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTG 128
++ G+RIAQ+I +V + VE+ D+T RGEGGFG +G
Sbjct: 110 TIQPGERIAQMIFVPVVQAEFNLVEDFDATDRGEGGFGHSG 150
>pdb|1EUW|A Chain A, Atomic Resolution Structure Of E. Coli Dutpase
Length = 152
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 3/101 (2%)
Query: 31 LVPTDLSIAIPEGTYARIA-PRSGLAWKHSMDVG--AGVIDADYRGPVGVILFNHSDVDF 87
LVPT L+I I + + A + PRSGL KH + +G G+ID+DY+G + + ++N F
Sbjct: 50 LVPTGLAIHIADPSLAAMMLPRSGLGHKHGIVLGNLVGLIDSDYQGQLMISVWNRGQDSF 109
Query: 88 VVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTG 128
++ G+RIAQ+I +V + VE+ D+T RGEGGFG +G
Sbjct: 110 TIQPGERIAQMIFVPVVQAEFNLVEDFDATDRGEGGFGHSG 150
>pdb|1RNJ|A Chain A, Crystal Structure Of Inactive Mutant Dutpase Complexed
With Substrate Analogue Imido-Dutp
pdb|1SYL|A Chain A, Crystal Structure Of Inactive Mutant Dutpase Complexed
With Substrate Dutp
Length = 152
Score = 75.5 bits (184), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 65/101 (64%), Gaps = 3/101 (2%)
Query: 31 LVPTDLSIAIPEGTYARIA-PRSGLAWKHSMDVG--AGVIDADYRGPVGVILFNHSDVDF 87
LVPT L+I I + + A + PRSGL KH + +G G+I++DY+G + + ++N F
Sbjct: 50 LVPTGLAIHIADPSLAAMMLPRSGLGHKHGIVLGNLVGLINSDYQGQLMISVWNRGQDSF 109
Query: 88 VVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTG 128
++ G+RIAQ+I +V + VE+ D+T RGEGGFG +G
Sbjct: 110 TIQPGERIAQMIFVPVVQAEFNLVEDFDATDRGEGGFGHSG 150
>pdb|3TQZ|A Chain A, Structure Of A Deoxyuridine 5'-Triphosphate
Nucleotidohydrolase (Dut) From Coxiella Burnetii
Length = 155
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 61/109 (55%), Gaps = 3/109 (2%)
Query: 23 KVPARGKALVPTDLSIAIPEGTYA-RIAPRSGLAWKHSMDVG--AGVIDADYRGPVGVIL 79
K+ L+ T L+I + A I PRSGL KH + +G G+ID+DY+GP+ V
Sbjct: 45 KIEPDETCLISTGLAIYLGHSNVAATILPRSGLGHKHGIVLGNLVGLIDSDYQGPLXVSC 104
Query: 80 FNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTG 128
+N + + GDRIAQL++ I+ VE + T RG GGFGS+G
Sbjct: 105 WNRGKEPYTINPGDRIAQLVVLPILKAQFAVVEEFELTERGAGGFGSSG 153
>pdb|3ZEZ|A Chain A, Phage Dutpases Control Transfer Of Virulence Genes By A
Proto-oncogenic G Protein-like Mechanism.
pdb|3ZF2|A Chain A, Phage Dutpases Control Transfer Of Virulence Genes By A
Proto-oncogenic G Protein-like Mechanism
Length = 207
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 75/140 (53%), Gaps = 29/140 (20%)
Query: 19 AAETKV-PARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGV 77
+AET V + KA++ TD++++IPEG + RSG++ K + + G IDA Y G +G+
Sbjct: 68 SAETVVLEPQEKAVIKTDVAVSIPEGYVGLLTSRSGVSSKTHLVIETGKIDAGYHGNLGI 127
Query: 78 ILFNHSDVD---------------------------FVVKVGDRIAQLIIEKIVTPDVLE 110
+ N + D + ++ G+RIAQL+I I TP++ +
Sbjct: 128 NIKNDHEDDKMQTIFLRNIDNEKIFEKERHLYKLGSYRIEKGERIAQLVIVPIWTPELKQ 187
Query: 111 VENLDS-TVRGEGGFGSTGV 129
VE +S + RGE GFGS+GV
Sbjct: 188 VEEFESVSERGEKGFGSSGV 207
>pdb|4GK6|A Chain A, X-Ray Crystal Structure Of A Hypothetical Deoxyuridine
5-Triphosphate Nucleotidohydrolase From Mycobacterium
Abscessus
Length = 138
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 63/105 (60%), Gaps = 3/105 (2%)
Query: 16 LRSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRG 73
L SA + + + LV T +++AIP G + PRSGLA + + + G IDA YRG
Sbjct: 30 LYSAEDVVIEPGRRTLVGTGIAVAIPSGMVGLVHPRSGLAARVGLSIVNSPGTIDAGYRG 89
Query: 74 PVGVILFN-HSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDST 117
V V L N S+V V+ GDRIAQL+++++ P+++EV++ D
Sbjct: 90 EVKVNLINLDSEVPIVIARGDRIAQLLVQQVELPELVEVDSFDEA 134
>pdb|3ZF1|A Chain A, Phage Dutpases Control Transfer Of Virulence Genes By A
Proto-oncogenic G Protein-like Mechanism
Length = 207
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 75/140 (53%), Gaps = 29/140 (20%)
Query: 19 AAETKV-PARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGV 77
+AET V + KA++ TD++++IPEG + RSG++ K + + G I+A Y G +G+
Sbjct: 68 SAETVVLEPQEKAVIKTDVAVSIPEGYVGLLTSRSGVSSKTHLVIETGKINAGYHGNLGI 127
Query: 78 ILFNHSDVD---------------------------FVVKVGDRIAQLIIEKIVTPDVLE 110
+ N + D + ++ G+RIAQL+I I TP++ +
Sbjct: 128 NIKNDHEDDKMQTIFLRNIDNEKIFEKERHLYKLGSYRIEKGERIAQLVIVPIWTPELKQ 187
Query: 111 VENLDS-TVRGEGGFGSTGV 129
VE +S + RGE GFGS+GV
Sbjct: 188 VEEFESVSERGEKGFGSSGV 207
>pdb|3ZF5|A Chain A, Phage Dutpases Control Transfer Of Virulence Genes By A
Proto-oncogenic G Protein-like Mechanism
Length = 207
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 75/140 (53%), Gaps = 29/140 (20%)
Query: 19 AAETKV-PARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGV 77
+AET V + KA++ TD++++IPEG + RSG++ K + + G IDA + G +G+
Sbjct: 68 SAETVVLEPQEKAVIKTDVAVSIPEGYVGLLTSRSGVSSKTHLVIETGKIDAGFHGNLGI 127
Query: 78 ILFNHSDVD---------------------------FVVKVGDRIAQLIIEKIVTPDVLE 110
+ N + D + ++ G+RIAQL+I I TP++ +
Sbjct: 128 NIKNDHEDDKMQTIFLRNIDNEKIFEKERHLYKLGSYRIEKGERIAQLVIVPIWTPELKQ 187
Query: 111 VENLDS-TVRGEGGFGSTGV 129
VE +S + RGE GFGS+GV
Sbjct: 188 VEEFESVSERGEKGFGSSGV 207
>pdb|3ZF0|A Chain A, Phage Dutpases Control Transfer Of Virulence Genes By A
Proto-oncogenic G Protein-like Mechanism
Length = 207
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 29/140 (20%)
Query: 19 AAETKV-PARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGV 77
+AET V + KA++ TD++++IPEG + RSG++ K + + G I A Y G +G+
Sbjct: 68 SAETVVLEPQEKAVIKTDVAVSIPEGYVGLLTSRSGVSSKTHLVIETGKIAAGYHGNLGI 127
Query: 78 ILFNHSDVD---------------------------FVVKVGDRIAQLIIEKIVTPDVLE 110
+ N + D + ++ G+RIAQL+I I TP++ +
Sbjct: 128 NIKNDHEDDKMQTIFLRNIDNEKIFEKERHLYKLGSYRIEKGERIAQLVIVPIWTPELKQ 187
Query: 111 VENLDS-TVRGEGGFGSTGV 129
VE +S + RGE GFGS+GV
Sbjct: 188 VEEFESVSERGEKGFGSSGV 207
>pdb|3ZF3|A Chain A, Phage Dutpases Control Transfer Of Virulence Genes By A
Proto-oncogenic G Protein-like Mechanism
Length = 207
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 29/140 (20%)
Query: 19 AAETKV-PARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGV 77
+AET V + KA++ TD++++IPEG + RSG++ K + + G IDA G +G+
Sbjct: 68 SAETVVLEPQEKAVIKTDVAVSIPEGYVGLLTSRSGVSSKTHLVIETGKIDAGIHGNLGI 127
Query: 78 ILFNHSDVD---------------------------FVVKVGDRIAQLIIEKIVTPDVLE 110
+ N + D + ++ G+RIAQL+I I TP++ +
Sbjct: 128 NIKNDHEDDKMQTIFLRNIDNEKIFEKERHLYKLGSYRIEKGERIAQLVIVPIWTPELKQ 187
Query: 111 VENLDS-TVRGEGGFGSTGV 129
VE +S + RGE GFGS+GV
Sbjct: 188 VEEFESVSERGEKGFGSSGV 207
>pdb|3ZF6|A Chain A, Phage Dutpases Control Transfer Of Virulence Genes By A
Proto-oncogenic G Protein-like Mechanism
Length = 207
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 73/140 (52%), Gaps = 29/140 (20%)
Query: 19 AAETKV-PARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGV 77
+AET V + KA++ TD++++IPEG + RSG++ K + + G I A Y G +G+
Sbjct: 68 SAETVVLEPQEKAVIKTDVAVSIPEGYVGLLTSRSGVSSKTHLVIETGKIAAGYHGNLGI 127
Query: 78 ILFNHSDVD---------------------------FVVKVGDRIAQLIIEKIVTPDVLE 110
+ N + D + ++ G+RIAQL+I I TP++ +
Sbjct: 128 NIKNDHEDDKMQTIFLRNICNEKIFEKERHLYKLGSYRIEKGERIAQLVIVPIWTPELKQ 187
Query: 111 VENLDS-TVRGEGGFGSTGV 129
VE +S + RGE GFGS GV
Sbjct: 188 VEEFESVSERGEKGFGSCGV 207
>pdb|3ZF4|A Chain A, Phage Dutpases Control Transfer Of Virulence Genes By A
Proto-oncogenic G Protein-like Mechanism
Length = 207
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 29/140 (20%)
Query: 19 AAETKV-PARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGV 77
+AET V + KA++ TD++++IPEG + RSG++ K + + G IDA G +G+
Sbjct: 68 SAETVVLEPQEKAVIKTDVAVSIPEGYVGLLTSRSGVSSKTHLVIETGKIDAGAHGNLGI 127
Query: 78 ILFNHSDVD---------------------------FVVKVGDRIAQLIIEKIVTPDVLE 110
+ N + D + ++ G+RIAQL+I I TP++ +
Sbjct: 128 NIKNDHEDDKMQTIFLRNIDNEKIFEKERHLYKLGSYRIEKGERIAQLVIVPIWTPELKQ 187
Query: 111 VENLDS-TVRGEGGFGSTGV 129
VE +S + RGE GFGS+GV
Sbjct: 188 VEEFESVSERGEKGFGSSGV 207
>pdb|3H6D|A Chain A, Structure Of The Mycobacterium Tuberculosis Dutpase D28n
Mutant
Length = 174
Score = 63.2 bits (152), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 64/115 (55%), Gaps = 8/115 (6%)
Query: 16 LRSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRG 73
L SA + ++ +ALV T +++A+P G + PRSGLA + + + G IDA YRG
Sbjct: 49 LYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRG 108
Query: 74 PVGVILFN-HSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGST 127
+ V L N VV GDRIAQL+++++ +++EV + D E G ST
Sbjct: 109 EIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFD-----EAGLAST 158
>pdb|1MQ7|A Chain A, Crystal Structure Of Dutpase From Mycobacterium
Tuberculosis (rv2697c)
Length = 154
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 64/115 (55%), Gaps = 8/115 (6%)
Query: 16 LRSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRG 73
L SA + ++ +ALV T +++A+P G + PRSGLA + + + G IDA YRG
Sbjct: 29 LYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRG 88
Query: 74 PVGVILFN-HSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGST 127
+ V L N VV GDRIAQL+++++ +++EV + D E G ST
Sbjct: 89 EIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFD-----EAGLAST 138
>pdb|3LOJ|A Chain A, Structure Of Mycobacterium Tuberculosis Dutpase H145a
Mutant
Length = 174
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 64/115 (55%), Gaps = 8/115 (6%)
Query: 16 LRSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRG 73
L SA + ++ +ALV T +++A+P G + PRSGLA + + + G IDA YRG
Sbjct: 49 LYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRG 108
Query: 74 PVGVILFN-HSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGST 127
+ V L N VV GDRIAQL+++++ +++EV + D E G ST
Sbjct: 109 EIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFD-----EAGLAST 158
>pdb|3HZA|A Chain A, Crystal Structure Of Dutpase H145w Mutant
Length = 174
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 64/115 (55%), Gaps = 8/115 (6%)
Query: 16 LRSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRG 73
L SA + ++ +ALV T +++A+P G + PRSGLA + + + G IDA YRG
Sbjct: 49 LYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRG 108
Query: 74 PVGVILFN-HSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGST 127
+ V L N VV GDRIAQL+++++ +++EV + D E G ST
Sbjct: 109 EIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFD-----EAGLAST 158
>pdb|1SIX|A Chain A, Mycobacterium Tuberculosis Dutpase Complexed With
Magnesium And Alpha, Beta-Imido-Dutp
pdb|1SLH|A Chain A, Mycobacterium Tuberculosis Dutpase Complexed With
Magnesium And Dudp
pdb|1SLH|B Chain B, Mycobacterium Tuberculosis Dutpase Complexed With
Magnesium And Dudp
pdb|1SLH|C Chain C, Mycobacterium Tuberculosis Dutpase Complexed With
Magnesium And Dudp
pdb|1SM8|A Chain A, M. Tuberculosis Dutpase Complexed With Chromium And Dutp
pdb|1SM8|B Chain B, M. Tuberculosis Dutpase Complexed With Chromium And Dutp
pdb|1SM8|C Chain C, M. Tuberculosis Dutpase Complexed With Chromium And Dutp
pdb|1SMC|A Chain A, Mycobacterium Tuberculosis Dutpase Complexed With Dutp In
The Absence Of Metal Ion.
pdb|1SMC|B Chain B, Mycobacterium Tuberculosis Dutpase Complexed With Dutp In
The Absence Of Metal Ion.
pdb|1SMC|C Chain C, Mycobacterium Tuberculosis Dutpase Complexed With Dutp In
The Absence Of Metal Ion.
pdb|1SNF|A Chain A, Mycobacterium Tuberculosis Dutpase Complexed With
Magnesium And Deoxyuridine 5'-Monophosphate
pdb|1SNF|B Chain B, Mycobacterium Tuberculosis Dutpase Complexed With
Magnesium And Deoxyuridine 5'-Monophosphate
pdb|1SNF|C Chain C, Mycobacterium Tuberculosis Dutpase Complexed With
Magnesium And Deoxyuridine 5'-Monophosphate
pdb|2PY4|A Chain A, Full Length Structure Of The Mycobacterium Tuberculosis
Dutpase Complexed With Magnesium And
Alpha,Beta-Imido-Dutp
Length = 174
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 64/115 (55%), Gaps = 8/115 (6%)
Query: 16 LRSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRG 73
L SA + ++ +ALV T +++A+P G + PRSGLA + + + G IDA YRG
Sbjct: 49 LYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRG 108
Query: 74 PVGVILFN-HSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGST 127
+ V L N VV GDRIAQL+++++ +++EV + D E G ST
Sbjct: 109 EIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFD-----EAGLAST 158
>pdb|3I93|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Dutpase
Stop138t Mutant
Length = 158
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 64/115 (55%), Gaps = 8/115 (6%)
Query: 16 LRSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRG 73
L SA + ++ +ALV T +++A+P G + PRSGLA + + + G IDA YRG
Sbjct: 49 LYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRG 108
Query: 74 PVGVILFN-HSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGST 127
+ V L N VV GDRIAQL+++++ +++EV + D E G ST
Sbjct: 109 EIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFD-----EAGLAST 158
>pdb|1SJN|A Chain A, Mycobacterium Tuberculosis Dutpase Complexed With
Magnesium And Alpha, Beta-Imido-Dutp
pdb|1SJN|B Chain B, Mycobacterium Tuberculosis Dutpase Complexed With
Magnesium And Alpha, Beta-Imido-Dutp
pdb|1SJN|C Chain C, Mycobacterium Tuberculosis Dutpase Complexed With
Magnesium And Alpha, Beta-Imido-Dutp
Length = 170
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 64/115 (55%), Gaps = 8/115 (6%)
Query: 16 LRSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRG 73
L SA + ++ +ALV T +++A+P G + PRSGLA + + + G IDA YRG
Sbjct: 29 LYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRG 88
Query: 74 PVGVILFN-HSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGST 127
+ V L N VV GDRIAQL+++++ +++EV + D E G ST
Sbjct: 89 EIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFD-----EAGLAST 138
>pdb|1DUT|A Chain A, Fiv Dutp Pyrophosphatase
pdb|1DUT|B Chain B, Fiv Dutp Pyrophosphatase
Length = 133
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 58/101 (57%), Gaps = 5/101 (4%)
Query: 31 LVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFVVK 90
++PT + + +P+G + I +S + K +DV GVID YRG +GVI+ N S +
Sbjct: 35 VIPTGVKLMLPKGYWGLIIGKSSIGSK-GLDVLGGVIDEGYRGEIGVIMINVSRKSITLM 93
Query: 91 VGDRIAQLIIEKIVTPDVLEVEN--LDSTVRGEGGFGSTGV 129
+IAQLII +VLE +DS RG+ G+GSTGV
Sbjct: 94 ERQKIAQLIILP-CKHEVLEQGKVVMDSE-RGDNGYGSTGV 132
>pdb|1F7D|A Chain A, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms
pdb|1F7D|B Chain B, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms
pdb|1F7K|A Chain A, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7K|B Chain B, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7N|A Chain A, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7N|B Chain B, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7O|A Chain A, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7O|B Chain B, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7O|C Chain C, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7P|A Chain A, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7P|B Chain B, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7P|C Chain C, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7Q|A Chain A, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7Q|B Chain B, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7Q|C Chain C, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7R|A Chain A, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms
Length = 136
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 58/101 (57%), Gaps = 5/101 (4%)
Query: 31 LVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFVVK 90
++PT + + +P+G + I +S + K +DV GVID YRG +GVI+ N S +
Sbjct: 35 VIPTGVKLMLPKGYWGLIIGKSSIGSK-GLDVLGGVIDEGYRGEIGVIMINVSRKSITLM 93
Query: 91 VGDRIAQLIIEKIVTPDVLEVEN--LDSTVRGEGGFGSTGV 129
+IAQLII +VLE +DS RG+ G+GSTGV
Sbjct: 94 ERQKIAQLIILP-CKHEVLEQGKVVMDSE-RGDNGYGSTGV 132
>pdb|1DUC|A Chain A, Eiav Dutpase DudpSTRONTIUM COMPLEX
pdb|1DUN|A Chain A, Eiav Dutpase Native
Length = 134
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 24 VPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHS 83
+P ++PTD+ I +P ++ + +S +A K + + G+ID Y G + VI N
Sbjct: 29 IPVSDTKIIPTDVKIQVPPNSFGWVTGKSSMA-KQGLLINGGIIDEGYTGEIQVICTNIG 87
Query: 84 DVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 129
+ + G + AQLII + + + + RG+ GFGSTGV
Sbjct: 88 KSNIKLIEGQKFAQLIILQHHSNSRQPWDENKISQRGDKGFGSTGV 133
>pdb|2XCD|A Chain A, Structure Of Yncf,The Genomic Dutpase From Bacillus
Subtilis
pdb|2XCD|B Chain B, Structure Of Yncf,The Genomic Dutpase From Bacillus
Subtilis
pdb|2XCD|C Chain C, Structure Of Yncf,The Genomic Dutpase From Bacillus
Subtilis
pdb|2XCD|D Chain D, Structure Of Yncf,The Genomic Dutpase From Bacillus
Subtilis
pdb|2XCD|E Chain E, Structure Of Yncf,The Genomic Dutpase From Bacillus
Subtilis
pdb|2XCD|F Chain F, Structure Of Yncf,The Genomic Dutpase From Bacillus
Subtilis
pdb|2XCE|A Chain A, Structure Of Yncf In Complex With Dupnhpp
pdb|2XCE|B Chain B, Structure Of Yncf In Complex With Dupnhpp
pdb|2XCE|C Chain C, Structure Of Yncf In Complex With Dupnhpp
pdb|2XCE|D Chain D, Structure Of Yncf In Complex With Dupnhpp
pdb|2XCE|E Chain E, Structure Of Yncf In Complex With Dupnhpp
pdb|2XCE|F Chain F, Structure Of Yncf In Complex With Dupnhpp
Length = 144
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 14/122 (11%)
Query: 16 LRSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRS------GLAWKHSMDVGAGVIDA 69
LR+A + + LVP +++ +PEG A + PRS G+ +SM GVID
Sbjct: 28 LRAAEDVTIKKDEFKLVPLGVAMELPEGYEAHVVPRSSTYKNFGVIQTNSM----GVIDE 83
Query: 70 DYRGPVGVILF-NHSDVDFVVKVGDRIAQL-IIEKIVTPDVLEVENLDSTVRGEGGFGST 127
Y+G F ++ D +K GDRI Q I++K+ +++EVE+L + R GG GST
Sbjct: 84 SYKGDNDFWFFPAYALRDTEIKKGDRICQFRIMKKMPAVELVEVEHLGNEDR--GGLGST 141
Query: 128 GV 129
G
Sbjct: 142 GT 143
>pdb|2BAZ|A Chain A, Structure Of Yoss, A Putative Dutpase From Bacillus
Subtilis
pdb|2BAZ|B Chain B, Structure Of Yoss, A Putative Dutpase From Bacillus
Subtilis
pdb|2BAZ|C Chain C, Structure Of Yoss, A Putative Dutpase From Bacillus
Subtilis
pdb|2XX6|A Chain A, Structure Of The Bacillus Subtilis Prophage Dutpase, Yoss
pdb|2XX6|B Chain B, Structure Of The Bacillus Subtilis Prophage Dutpase, Yoss
pdb|2XX6|C Chain C, Structure Of The Bacillus Subtilis Prophage Dutpase, Yoss
pdb|2XX6|D Chain D, Structure Of The Bacillus Subtilis Prophage Dutpase, Yoss
pdb|2XY3|A Chain A, Structure Of The Bacillus Subtilis Prophage Dutpase With
Dupnhpp
pdb|2XY3|B Chain B, Structure Of The Bacillus Subtilis Prophage Dutpase With
Dupnhpp
pdb|2XY3|C Chain C, Structure Of The Bacillus Subtilis Prophage Dutpase With
Dupnhpp
pdb|2XY3|D Chain D, Structure Of The Bacillus Subtilis Prophage Dutpase With
Dupnhpp
pdb|2XY3|E Chain E, Structure Of The Bacillus Subtilis Prophage Dutpase With
Dupnhpp
pdb|2XY3|F Chain F, Structure Of The Bacillus Subtilis Prophage Dutpase With
Dupnhpp
pdb|2Y1T|A Chain A, Bacillus Subtilis Prophage Dutpase In Complex With Dudp
pdb|2Y1T|B Chain B, Bacillus Subtilis Prophage Dutpase In Complex With Dudp
pdb|2Y1T|C Chain C, Bacillus Subtilis Prophage Dutpase In Complex With Dudp
pdb|2Y1T|D Chain D, Bacillus Subtilis Prophage Dutpase In Complex With Dudp
pdb|2Y1T|E Chain E, Bacillus Subtilis Prophage Dutpase In Complex With Dudp
pdb|2Y1T|F Chain F, Bacillus Subtilis Prophage Dutpase In Complex With Dudp
Length = 142
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 14/122 (11%)
Query: 16 LRSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRS------GLAWKHSMDVGAGVIDA 69
LR+A + + LVP +++ +PEG A + PRS G+ +SM GVID
Sbjct: 26 LRAAEDVAIKKDEFKLVPLGVAMELPEGYEAHVVPRSSTYKNFGVIQTNSM----GVIDE 81
Query: 70 DYRGPVGVILF-NHSDVDFVVKVGDRIAQL-IIEKIVTPDVLEVENLDSTVRGEGGFGST 127
Y+G F ++ D +K GDRI Q I++K+ D++EV+ L + R GG GST
Sbjct: 82 SYKGDNDFWFFPAYALRDTKIKKGDRICQFRIMKKMPAVDLIEVDRLGNGDR--GGHGST 139
Query: 128 GV 129
G
Sbjct: 140 GT 141
>pdb|3T64|A Chain A, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
pdb|3T64|B Chain B, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
pdb|3T64|C Chain C, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
pdb|3T6Y|A Chain A, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
pdb|3T6Y|B Chain B, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
pdb|3T6Y|C Chain C, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
pdb|3T70|A Chain A, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
pdb|3T70|B Chain B, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
pdb|3T70|C Chain C, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
Length = 181
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 40/67 (59%), Gaps = 6/67 (8%)
Query: 65 GVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLE---VENLDSTVRGE 121
G+IDA YRG + L N SD ++ +K D++ QL+ T + L VE LD T RGE
Sbjct: 106 GLIDAGYRGEIIAALDNTSDQEYHIKKNDKLVQLV---SFTGEPLSFELVEELDETSRGE 162
Query: 122 GGFGSTG 128
GGFGST
Sbjct: 163 GGFGSTS 169
>pdb|3T60|A Chain A, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
pdb|3T60|B Chain B, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
pdb|3T60|C Chain C, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
Length = 181
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 40/67 (59%), Gaps = 6/67 (8%)
Query: 65 GVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLE---VENLDSTVRGE 121
G+IDA YRG + L N SD ++ +K D++ QL+ T + L VE LD T RGE
Sbjct: 106 GLIDAGYRGEIIAALDNTSDQEYHIKKNDKLVQLV---SFTGEPLSFELVEELDETSRGE 162
Query: 122 GGFGSTG 128
GGFGST
Sbjct: 163 GGFGSTS 169
>pdb|1VYQ|A Chain A, Novel Inhibitors Of Plasmodium Falciparum Dutpase Provide
A Platform For Anti-Malarial Drug Design
pdb|1VYQ|B Chain B, Novel Inhibitors Of Plasmodium Falciparum Dutpase Provide
A Platform For Anti-Malarial Drug Design
pdb|1VYQ|C Chain C, Novel Inhibitors Of Plasmodium Falciparum Dutpase Provide
A Platform For Anti-Malarial Drug Design
pdb|2Y8C|A Chain A, Plasmodium Falciparum Dutpase In Complex With A Trityl
Ligand
pdb|2Y8C|B Chain B, Plasmodium Falciparum Dutpase In Complex With A Trityl
Ligand
pdb|2Y8C|C Chain C, Plasmodium Falciparum Dutpase In Complex With A Trityl
Ligand
Length = 173
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 40/67 (59%), Gaps = 6/67 (8%)
Query: 65 GVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLE---VENLDSTVRGE 121
G+IDA YRG + L N SD ++ +K D++ QL+ T + L VE LD T RGE
Sbjct: 106 GLIDAGYRGEIIAALDNTSDQEYHIKKNDKLVQLV---SFTGEPLSFELVEELDETSRGE 162
Query: 122 GGFGSTG 128
GGFGST
Sbjct: 163 GGFGSTS 169
>pdb|2D4N|A Chain A, Crystal Structure Of M-Pmv Dutpase Complexed With Dupnpp,
Substrate Analogue
pdb|3TPW|A Chain A, Crystal Structure Of M-Pmv Dutpase - Dupnpp Complex
Revealing Distorted Ligand Geometry (Approach
Intermediate)
pdb|3TPN|A Chain A, Crystal Structure Of M-Pmv Dutpase Complexed With Dupnpp,
Substrate
pdb|3TPY|A Chain A, Crystal Structure Of M-Pmv Dutpase With A Mixed Population
Of Substrate (Dupnpp) And Post-Inversion Product (Dump)
In The Active Sites
pdb|3TQ3|A Chain A, Crystal Structure Of M-Pmv Dutpase With A Mixed Population
Of Substrate (Dupnpp) And Post-Inversion Product (Dump)
In The Active Sites
pdb|3TQ4|A Chain A, Crystal Structure Of M-Pmv Dutpase With A Mixed Population
Of Substrate (Dupnpp) And Post-Inversion Product (Dump)
In The Active Sites
pdb|3TQ5|A Chain A, Crystal Structure Of M-Pmv Dutpase Post-Inversion Product
(Dump) Complex
pdb|3TRL|A Chain A, Crystal Structure Of M-Pmv Dutpase Post-Inversion Product
(Dump) Complex
pdb|3TSL|A Chain A, Crystal Structure Of M-Pmv Dutpase Relaxed End-Product
(Dump) Complex
pdb|3TTA|A Chain A, Crystal Structure Of M-Pmv Dutpase Relaxed End-Product
(Dump) Complex
Length = 152
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 24 VPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHS 83
P G + T + +P T+ I RS + K + V GVID DY G + ++ +
Sbjct: 52 TPEMGPQALSTGIYGPLPPNTFGLILGRSSITMK-GLQVYPGVIDNDYTGEIKIMAKAVN 110
Query: 84 DVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 129
++ V G+RIAQLI+ ++ D + RG+G FGS+ +
Sbjct: 111 NI-VTVSQGNRIAQLILLPLIETD----NKVQQPYRGQGSFGSSDI 151
>pdb|2D4L|A Chain A, Crystal Structure Of Truncated In C-Terminal M-Pmv Dutpase
pdb|2D4M|A Chain A, Crystal Structure Of Apo M-Pmv Dutpase
pdb|3TP1|A Chain A, Crystal Structure Of The Precatalytic M-Pmv Dutpase -
Substrate (Dupnpp) Complex
pdb|3TPS|A Chain A, Crystal Structure Of M-Pmv Dutpase Complexed With Dupnpp
Substrate
pdb|3TRN|A Chain A, Crystal Structure Of M-Pmv Dutpase Post-Inversion Product
(Dump) Complex
pdb|3TS6|A Chain A, Crystal Structure Of M-Pmv Dutpase Relaxed End-Product
(Dump) Complex
Length = 152
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 24 VPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHS 83
P G + T + +P T+ I RS + K + V GVID DY G + ++ +
Sbjct: 52 TPEMGPQALSTGIYGPLPPNTFGLILGRSSITMK-GLQVYPGVIDNDYTGEIKIMAKAVN 110
Query: 84 DVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 129
++ V G+RIAQLI+ ++ D + RG+G FGS+ +
Sbjct: 111 NI-VTVSQGNRIAQLILLPLIETD----NKVQQPYRGQGSFGSSDI 151
>pdb|2WE2|A Chain A, Ebv Dutpase Double Mutant Gly78asp-Asp131ser With Dump
Length = 286
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 43 GTYARIAPRSGLA-W---KHSMDVGAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQL 98
G YAR GL W + G+ID DY G + +IL N + ++ + L
Sbjct: 55 GLYARPPEGHGLMLWGSTSRPVTSHVGIIDPDYTGELRLILQNQRRYNSTLRPSELKIHL 114
Query: 99 IIEKIVTPDVLE 110
+ TP + E
Sbjct: 115 AAFRYATPQMEE 126
>pdb|3EZU|A Chain A, Crystal Structure Of Multidomain Protein Of Unknown
Function With Ggdef-Domain (Np_951600.1) From Geobacter
Sulfurreducens At 1.95 A Resolution
Length = 342
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 14/63 (22%)
Query: 43 GTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEK 102
G+ A A RSG +VG +ID DY VG ++ + GDRI QL+ E
Sbjct: 201 GSLAYAAQRSG------SNVGIXLIDLDYFKLVGD--------NYGHQTGDRILQLVAET 246
Query: 103 IVT 105
I +
Sbjct: 247 ITS 249
>pdb|1VBJ|A Chain A, The Crystal Structure Of Prostaglandin F Synthase From
Trypanosoma Brucei
pdb|1VBJ|B Chain B, The Crystal Structure Of Prostaglandin F Synthase From
Trypanosoma Brucei
Length = 281
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Query: 10 ICYHCILRSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDA 69
+C +C ++ A T G+ + D + G Y + A + L W ++ AGVI
Sbjct: 178 LCEYCKSKNIAVTAWSPLGQGHLVEDARLKAIGGKYGKTAAQVMLRW----EIQAGVITI 233
Query: 70 DYRGPVGVILFNHSDVDFVVKVGD 93
G I N + DF + D
Sbjct: 234 PKSGNEARIKENGNIFDFELTAED 257
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
Query: 69 ADYRGPVGVILFNHSD--------VDFVVKVGDRIAQLIIEK 102
AD R PVG I F+ SD VD V++G R A II +
Sbjct: 409 ADSRTPVGPIHFSCSDIAAEGYGHVDGAVRMGQRTAADIIAR 450
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c Mutant
Length = 453
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
Query: 69 ADYRGPVGVILFNHSD--------VDFVVKVGDRIAQLIIEK 102
AD R PVG I F+ SD VD V++G R A II +
Sbjct: 409 ADSRTPVGPIHFSCSDIAAEGYQHVDGAVRMGQRTAADIIAR 450
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
Query: 69 ADYRGPVGVILFNHSD--------VDFVVKVGDRIAQLIIEK 102
AD R PVG I F+ SD VD V++G R A II +
Sbjct: 409 ADSRTPVGPIHFSCSDIAAEGYQHVDGAVRMGQRTAADIIAR 450
>pdb|1GJV|A Chain A, Branched-chain Alpha-ketoacid Dehydrogenase Kinase (bck)
Complxed With Atp-gamma-s
pdb|1GKX|A Chain A, Branched-Chain Alpha-Ketoacid Dehydrogenase Kinase (Bck)
pdb|1GKZ|A Chain A, Branched-Chain Alpha-Ketoacid Dehydrogenase Kinase (Bck)
Complxed With Adp
Length = 388
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 67 IDADYRGPVGVILFNHSDVDFVVKVGDR 94
+D Y P VI ++DVD ++++ DR
Sbjct: 259 LDTPYNVPDVVITIANNDVDLIIRISDR 286
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
Query: 69 ADYRGPVGVILFNHSD--------VDFVVKVGDRIAQLIIEK 102
AD R PVG I F+ SD VD V++G R A II +
Sbjct: 409 ADSRTPVGPIHFSCSDIAAEGYQHVDGAVRMGQRTAADIIAR 450
>pdb|3TZ0|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase KinaseS-Alpha-Chloroisocaproate Complex
pdb|3TZ2|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase KinasePHENYLBUTYRATE COMPLEX
pdb|3TZ4|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase KinaseS-Alpha-Chloroisocaproate Complex
With Adp
pdb|3TZ5|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase KinasePHENYLBUTYRATE COMPLEX WITH ADP
Length = 418
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 67 IDADYRGPVGVILFNHSDVDFVVKVGDR 94
+D Y P VI ++DVD ++++ DR
Sbjct: 289 LDTPYNVPDVVITIANNDVDLIIRISDR 316
>pdb|3VAD|A Chain A, Crystal Structure Of I170f Mutant Branched-chain
Alpha-ketoacid Dehydrogenase Kinase In Complex With
3,6-dichlorobenzo[b]thiophene-2- Carboxylic Acid
Length = 418
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 67 IDADYRGPVGVILFNHSDVDFVVKVGDR 94
+D Y P VI ++DVD ++++ DR
Sbjct: 289 LDTPYNVPDVVITIANNDVDLIIRISDR 316
>pdb|2RGH|A Chain A, Structure Of Alpha-Glycerophosphate Oxidase From
Streptococcus Sp.: A Template For The Mitochondrial
Alpha- Glycerophosphate Dehydrogenase
Length = 571
Score = 26.6 bits (57), Expect = 4.4, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 17 RSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSG---LAWKHSMDVGAGVIDADYRG 73
R + P +G LV + +P+ TY + G A G D DY+G
Sbjct: 260 RPVSPKXRPTKGIHLVVDAKKLPVPQPTYFDTGKQDGRXVFAIPRENKTYFGTTDTDYQG 319
Query: 74 PVGVILFNHSDVDFVVKV 91
DVD+++ V
Sbjct: 320 DFTDPKVTQEDVDYLLDV 337
>pdb|2EYQ|A Chain A, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
pdb|2EYQ|B Chain B, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
Length = 1151
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 35 DLSI-AIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFVVKVGD 93
DLSI A P R+A ++ + SM V ++ RG G + + ++DV+ + K +
Sbjct: 775 DLSIIATPPAR--RLAVKTFVREYDSMVVREAILREILRG--GQVYYLYNDVENIQKAAE 830
Query: 94 RIAQLIIE 101
R+A+L+ E
Sbjct: 831 RLAELVPE 838
>pdb|2RGO|A Chain A, Structure Of Alpha-Glycerophosphate Oxidase From
Streptococcus Sp.: A Template For The Mitochondrial
Alpha- Glycerophosphate Dehydrogenase
pdb|2RGO|B Chain B, Structure Of Alpha-Glycerophosphate Oxidase From
Streptococcus Sp.: A Template For The Mitochondrial
Alpha- Glycerophosphate Dehydrogenase
Length = 607
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 25 PARGKALVPTDLSIAIPEGTYARIAPRSG---LAWKHSMDVGAGVIDADYRGPVGVILFN 81
P +G LV + +P+ TY + G A G D DY+G
Sbjct: 254 PTKGIHLVVDAKKLPVPQPTYFDTGKQDGRMVFAIPRENKTYFGTTDTDYQGDFTDPKVT 313
Query: 82 HSDVDFVVKV 91
DVD+++ V
Sbjct: 314 QEDVDYLLDV 323
>pdb|1E8O|A Chain A, Core Of The Alu Domain Of The Mammalian Srp
pdb|1E8O|C Chain C, Core Of The Alu Domain Of The Mammalian Srp
pdb|1E8S|A Chain A, Alu Domain Of The Mammalian Srp (Potential Alu
Retroposition Intermediate)
pdb|1RY1|C Chain C, Structure Of The Signal Recognition Particle Interacting
With The Elongation-Arrested Ribosome
Length = 85
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 77 VILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTV 118
V+ + HSD + VKV D + L+ + DV ++E S +
Sbjct: 27 VLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKFHSQL 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.142 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,886,561
Number of Sequences: 62578
Number of extensions: 153366
Number of successful extensions: 375
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 271
Number of HSP's gapped (non-prelim): 61
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)