Query 032989
Match_columns 129
No_of_seqs 119 out of 1018
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 08:25:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032989.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032989hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0756 Dut dUTPase [Nucleotid 100.0 1.2E-46 2.7E-51 268.5 14.3 124 6-129 21-147 (148)
2 PHA03094 dUTPase; Provisional 100.0 1.9E-46 4.1E-51 269.2 15.3 124 6-129 20-143 (144)
3 PLN02547 dUTP pyrophosphatase 100.0 1.3E-45 2.8E-50 268.1 15.0 124 6-129 31-154 (157)
4 PHA02703 ORF007 dUTPase; Provi 100.0 2.9E-45 6.2E-50 268.1 14.7 124 6-129 28-151 (165)
5 TIGR00576 dut deoxyuridine 5'- 100.0 1.5E-44 3.1E-49 258.5 15.0 124 6-129 15-141 (141)
6 PRK00601 dut deoxyuridine 5'-t 100.0 1.3E-44 2.8E-49 261.2 14.8 124 6-129 22-149 (150)
7 PTZ00143 deoxyuridine 5'-triph 100.0 4.8E-44 1E-48 259.1 14.6 123 6-129 21-154 (155)
8 PRK13956 dut deoxyuridine 5'-t 100.0 6.7E-42 1.4E-46 246.1 12.3 119 6-129 21-147 (147)
9 PF00692 dUTPase: dUTPase; In 100.0 1.2E-39 2.6E-44 229.0 12.3 121 7-128 9-129 (129)
10 PHA03124 dUTPase; Provisional 100.0 7.9E-38 1.7E-42 249.6 13.6 119 7-129 286-418 (418)
11 KOG3370 dUTPase [Nucleotide tr 100.0 4.1E-38 8.9E-43 220.6 7.3 122 8-129 19-140 (140)
12 PHA03126 dUTPase; Provisional 100.0 1.1E-32 2.3E-37 217.1 12.3 118 9-129 175-326 (326)
13 PHA03123 dUTPase; Provisional 100.0 1.6E-32 3.6E-37 219.9 13.1 118 9-129 242-401 (402)
14 PHA03127 dUTPase; Provisional 100.0 8.2E-32 1.8E-36 213.0 12.4 117 10-129 173-322 (322)
15 PHA03130 dUTPase; Provisional 100.0 8.8E-31 1.9E-35 207.5 13.0 116 10-129 212-368 (368)
16 PHA03129 dUTPase; Provisional 100.0 3.9E-30 8.4E-35 208.7 12.7 118 9-129 285-436 (436)
17 cd07557 trimeric_dUTPase Trime 100.0 4.3E-30 9.3E-35 170.5 10.7 88 12-100 1-92 (92)
18 PHA03131 dUTPase; Provisional 100.0 4.8E-29 1E-33 195.9 12.9 91 9-103 130-221 (286)
19 PHA01707 dut 2'-deoxyuridine 5 99.9 3.3E-26 7.1E-31 166.5 12.4 96 9-106 27-137 (158)
20 TIGR02274 dCTP_deam deoxycytid 99.9 3.2E-25 6.9E-30 164.0 13.6 87 20-107 69-157 (179)
21 PHA03131 dUTPase; Provisional 99.9 4.4E-25 9.5E-30 173.6 14.3 107 9-119 23-129 (286)
22 PRK00416 dcd deoxycytidine tri 99.9 1.6E-24 3.4E-29 160.1 12.7 85 21-106 70-154 (177)
23 COG0717 Dcd Deoxycytidine deam 99.9 6.1E-22 1.3E-26 146.9 10.7 83 22-105 75-157 (183)
24 PRK02253 deoxyuridine 5'-triph 99.9 9.6E-22 2.1E-26 144.1 11.1 84 21-106 71-154 (167)
25 PHA03129 dUTPase; Provisional 99.8 1.3E-20 2.9E-25 153.3 9.1 77 29-109 77-159 (436)
26 PRK07559 2'-deoxycytidine 5'-t 99.7 1.5E-17 3.3E-22 134.6 9.9 82 20-103 80-169 (365)
27 PHA03127 dUTPase; Provisional 99.6 3.6E-15 7.7E-20 118.6 8.8 75 29-104 63-138 (322)
28 PRK07559 2'-deoxycytidine 5'-t 99.5 5E-14 1.1E-18 114.2 9.9 83 20-106 246-338 (365)
29 PHA03128 dUTPase; Provisional 99.5 3.8E-13 8.2E-18 107.7 9.6 89 11-103 209-298 (376)
30 PF06559 DCD: 2'-deoxycytidine 99.3 6.2E-12 1.3E-16 100.4 9.5 83 20-104 79-169 (364)
31 PHA03128 dUTPase; Provisional 99.3 3.8E-11 8.2E-16 96.3 12.9 107 6-116 99-205 (376)
32 PHA03125 dUTPase; Provisional 99.3 2.1E-11 4.6E-16 97.5 10.0 88 12-103 254-342 (376)
33 PHA03125 dUTPase; Provisional 99.2 3.8E-10 8.3E-15 90.4 12.7 106 5-115 144-249 (376)
34 PHA03126 dUTPase; Provisional 99.0 3.2E-09 7E-14 84.5 10.3 82 29-112 53-151 (326)
35 PHA03123 dUTPase; Provisional 98.1 2.6E-05 5.6E-10 63.7 9.1 77 29-107 85-164 (402)
36 PHA03130 dUTPase; Provisional 97.9 0.0001 2.2E-09 59.5 8.5 90 14-107 37-134 (368)
37 PF04797 Herpes_ORF11: Herpesv 97.5 0.0012 2.6E-08 54.1 10.6 85 13-102 264-351 (379)
38 PF06559 DCD: 2'-deoxycytidine 97.5 0.0011 2.4E-08 53.6 9.5 84 21-107 247-339 (364)
39 PF05784 Herpes_UL82_83: Betah 97.0 0.00015 3.2E-09 59.0 0.0 89 8-103 255-343 (348)
40 PHA03365 hypothetical protein; 95.2 0.38 8.2E-06 40.1 10.7 81 20-105 292-374 (419)
41 PHA03124 dUTPase; Provisional 86.2 4.1 8.8E-05 33.9 7.2 83 20-105 33-132 (418)
42 PF06284 Cytomega_UL84: Cytome 85.3 3.4 7.5E-05 34.8 6.5 84 10-103 372-455 (530)
43 PF05784 Herpes_UL82_83: Betah 82.0 0.43 9.4E-06 39.0 0.0 75 16-90 13-92 (348)
44 PF09160 FimH_man-bind: FimH, 70.0 5.7 0.00012 28.7 3.1 97 10-106 11-135 (147)
45 PF06030 DUF916: Bacterial pro 70.0 8.3 0.00018 26.7 3.8 29 20-50 85-114 (121)
46 PF04254 DUF432: Protein of un 66.2 37 0.00081 23.6 6.5 23 68-91 89-111 (123)
47 PF03712 Cu2_monoox_C: Copper 64.5 49 0.0011 23.6 7.4 20 11-30 3-22 (156)
48 cd00235 TLP-20 Telokin-like pr 57.1 25 0.00055 24.1 4.2 27 72-100 80-106 (108)
49 PF01629 DUF22: Domain of unkn 53.6 70 0.0015 22.0 6.0 42 7-49 32-73 (112)
50 COG1124 DppF ABC-type dipeptid 50.5 17 0.00037 28.5 2.8 70 32-104 22-92 (252)
51 PF07070 Spo0M: SpoOM protein; 50.0 39 0.00085 25.9 4.7 58 17-78 75-132 (218)
52 COG4525 TauB ABC-type taurine 45.7 14 0.00031 28.6 1.7 46 32-78 20-65 (259)
53 PF07385 DUF1498: Protein of u 44.9 53 0.0011 25.4 4.7 34 21-54 147-180 (225)
54 COG3638 ABC-type phosphate/pho 41.0 33 0.00071 27.1 3.1 52 25-78 13-64 (258)
55 PF00818 Ice_nucleation: Ice n 40.8 12 0.00027 16.9 0.4 6 123-128 1-6 (16)
56 PF06088 TLP-20: Nucleopolyhed 40.5 54 0.0012 24.2 4.0 28 73-102 81-108 (169)
57 PF05726 Pirin_C: Pirin C-term 35.7 1.3E+02 0.0028 19.7 5.5 65 21-102 3-69 (104)
58 COG2430 Uncharacterized conser 35.7 2.1E+02 0.0046 22.3 8.1 20 70-89 143-162 (236)
59 KOG1614 Exosomal 3'-5' exoribo 35.4 30 0.00064 27.4 2.1 65 21-91 164-236 (291)
60 PF14310 Fn3-like: Fibronectin 32.3 1.2E+02 0.0026 18.4 4.3 31 16-50 21-51 (71)
61 PRK13202 ureB urease subunit b 30.9 81 0.0018 21.5 3.4 23 67-89 15-37 (104)
62 PF11142 DUF2917: Protein of u 30.2 84 0.0018 19.1 3.1 22 19-40 35-56 (63)
63 cd09215 Thaumatin-like the swe 29.5 73 0.0016 23.1 3.2 32 20-57 26-57 (157)
64 COG4148 ModC ABC-type molybdat 26.4 91 0.002 25.5 3.5 65 37-104 18-86 (352)
65 KOG1417 Homogentisate 1,2-diox 26.3 2.2E+02 0.0047 23.4 5.6 44 7-50 159-208 (446)
66 COG4326 Spo0M Sporulation cont 26.0 1.2E+02 0.0027 23.5 4.0 54 16-78 94-152 (270)
67 TIGR03037 anthran_nbaC 3-hydro 25.9 2.7E+02 0.0058 20.3 6.0 51 4-54 51-106 (159)
68 PF06280 DUF1034: Fn3-like dom 25.7 64 0.0014 21.3 2.2 25 17-43 59-83 (112)
69 KOG4680 Uncharacterized conser 25.4 84 0.0018 22.7 2.8 45 2-46 77-122 (153)
70 cd08961 GH64-TLP-SF glycoside 25.2 80 0.0017 22.8 2.8 31 21-57 28-58 (153)
71 PF12852 Cupin_6: Cupin 25.0 2.4E+02 0.0052 20.1 5.3 39 2-40 36-75 (186)
72 cd09218 TLP-PA allergenic/anti 24.5 90 0.0019 23.9 3.0 32 20-57 28-59 (219)
73 cd00105 KH-I K homology RNA-bi 23.4 66 0.0014 18.5 1.7 22 36-57 2-23 (64)
74 PRK13264 3-hydroxyanthranilate 23.1 3.2E+02 0.007 20.3 5.9 51 4-54 57-112 (177)
75 PF05506 DUF756: Domain of unk 22.7 1.1E+02 0.0023 19.4 2.8 18 72-89 19-36 (89)
76 PF04489 DUF570: Protein of un 22.6 4.8E+02 0.01 22.2 10.4 83 10-100 343-428 (429)
77 cd09217 TLP-P thaumatin and al 21.8 1.2E+02 0.0027 21.7 3.2 30 21-56 21-51 (151)
78 COG4988 CydD ABC-type transpor 21.7 1.2E+02 0.0026 26.6 3.5 52 31-83 335-389 (559)
79 PF08615 RNase_H2_suC: Ribonuc 21.6 87 0.0019 21.6 2.3 21 35-55 52-72 (137)
80 COG3839 MalK ABC-type sugar tr 21.6 75 0.0016 26.0 2.2 68 32-104 18-85 (338)
81 PF07610 DUF1573: Protein of u 21.3 86 0.0019 17.5 1.9 15 77-91 2-16 (45)
82 COG3842 PotA ABC-type spermidi 20.4 75 0.0016 26.1 2.0 71 31-106 19-89 (352)
83 TIGR00187 ribE riboflavin synt 20.4 90 0.0019 23.5 2.3 43 36-82 121-164 (200)
No 1
>COG0756 Dut dUTPase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.2e-46 Score=268.49 Aligned_cols=124 Identities=49% Similarity=0.782 Sum_probs=120.6
Q ss_pred EeccCCeEEEEEcCcc-EEEcCCCEEEEEcCcEEEeCCCcEEEEEeCCCcccccceee--cceEEcCCCccceEEEEEcC
Q 032989 6 FFTIICYHCILRSAAE-TKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFNH 82 (129)
Q Consensus 6 ~~t~~~aG~DL~~~~~-~~i~p~~~~li~Tg~~v~ip~g~~~~i~~RSsl~~k~gl~v--~~gvID~gY~Gei~i~l~N~ 82 (129)
.+|+++|||||+++++ ++|+|+++.+|+||+.+.||+++++++.+||+++.|+|+.+ .+|+||+||+|||++.++|.
T Consensus 21 y~t~gsAG~DLrA~~~~~~i~pg~~~LVpTGl~~~ip~g~~~~v~PRSgla~k~Gi~~~Ns~G~IDsDYrGei~V~l~N~ 100 (148)
T COG0756 21 YATEGSAGYDLRAAEDEVTIAPGERKLVPTGLAIELPEGYEAQVRPRSGLALKHGITLGNSPGTIDSDYRGEIKVLLINL 100 (148)
T ss_pred eecCCccceeeecccceeEECCCCeEEecCCEEEEcCCCcEEEEeccccCceeceEEEecCCceECCCCCceEEEEEEeC
Confidence 5799999999999999 99999999999999999999999999999999999999876 59999999999999999999
Q ss_pred CCCcEEeeCCCEEEEEEEeecccccEEEeccCCCccCCCCCCcccCC
Q 032989 83 SDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 129 (129)
Q Consensus 83 ~~~~~~i~~G~riaQlv~~~~~~~~~~~v~~l~~t~Rg~~gfGSTG~ 129 (129)
+++++.|++|||||||+|.|+.++++.+++++++|+||+|||||||+
T Consensus 101 ~~~~f~ie~GdRIaQ~V~~~v~~~~~~~v~~~~~t~rg~GGFGSTG~ 147 (148)
T COG0756 101 GDEDFVIEKGDRIAQLVFVKVLQAEFDEVENLDETERGTGGFGSTGV 147 (148)
T ss_pred CCCCEEecCCCEEEEEEEEEEEecceeeeecccccccccCCCCCCCc
Confidence 99999999999999999999999999999999999999999999995
No 2
>PHA03094 dUTPase; Provisional
Probab=100.00 E-value=1.9e-46 Score=269.17 Aligned_cols=124 Identities=48% Similarity=0.775 Sum_probs=120.4
Q ss_pred EeccCCeEEEEEcCccEEEcCCCEEEEEcCcEEEeCCCcEEEEEeCCCcccccceeecceEEcCCCccceEEEEEcCCCC
Q 032989 6 FFTIICYHCILRSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDV 85 (129)
Q Consensus 6 ~~t~~~aG~DL~~~~~~~i~p~~~~li~Tg~~v~ip~g~~~~i~~RSsl~~k~gl~v~~gvID~gY~Gei~i~l~N~~~~ 85 (129)
..|.+||||||+++++++|+|++.++|+||+++++|+||++++++|||++.|+||.+..|+||+||+|||++.++|.+++
T Consensus 20 ~~~~~~aG~Dl~a~~~~~i~P~~~~lv~Tg~~i~ip~g~~g~i~~RSsla~k~Gl~v~~GvID~gYrGei~v~l~N~~~~ 99 (144)
T PHA03094 20 RSSPKSAGYDLYSAYDYTVPPKERILVKTDISLSIPKFCYGRIAPRSGLSLNYGIDIGGGVIDEDYRGNIGVIFINNGKC 99 (144)
T ss_pred cCCCCcccEEEecCCCeEECCCCEEEEEcCeEEEcCCCEEEEEEccccccccCCeeecCceECCCCCCceEEEEEECCCC
Confidence 45889999999999999999999999999999999999999999999999878998889999999999999999999999
Q ss_pred cEEeeCCCEEEEEEEeecccccEEEeccCCCccCCCCCCcccCC
Q 032989 86 DFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 129 (129)
Q Consensus 86 ~~~i~~G~riaQlv~~~~~~~~~~~v~~l~~t~Rg~~gfGSTG~ 129 (129)
++.|++|+|||||+|.++..+++++|++|++|+||+|||||||+
T Consensus 100 ~~~I~~G~RIaQlvf~~~~~~~~~~v~~l~~t~Rg~~GFGSTG~ 143 (144)
T PHA03094 100 TFNIKTGDRIAQIIFERIEYPELKEVQSLDSTDRGDQGFGSSGL 143 (144)
T ss_pred CeEECCCCEEEEEEEEEcccCcEEEecccCcccccCCCcCCCCC
Confidence 99999999999999999999999999999999999999999995
No 3
>PLN02547 dUTP pyrophosphatase
Probab=100.00 E-value=1.3e-45 Score=268.13 Aligned_cols=124 Identities=82% Similarity=1.211 Sum_probs=120.2
Q ss_pred EeccCCeEEEEEcCccEEEcCCCEEEEEcCcEEEeCCCcEEEEEeCCCcccccceeecceEEcCCCccceEEEEEcCCCC
Q 032989 6 FFTIICYHCILRSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDV 85 (129)
Q Consensus 6 ~~t~~~aG~DL~~~~~~~i~p~~~~li~Tg~~v~ip~g~~~~i~~RSsl~~k~gl~v~~gvID~gY~Gei~i~l~N~~~~ 85 (129)
..|++||||||+++++++|+|+++++|+||+++++|+||++++++|||+++|+++.+..|+||+||+|||++.+.|++++
T Consensus 31 r~t~g~AG~DL~~~~d~~i~P~~~~li~tgi~v~iP~g~~g~i~~RSgla~k~gi~~~~GvID~~Y~Gei~v~l~N~~~~ 110 (157)
T PLN02547 31 RGSALAAGYDLSSAYDTVVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSIDVGAGVIDADYRGPVGVILFNHSDV 110 (157)
T ss_pred cCCCCccCeeEecCCCeEECCCCEEEEEeceEEEcCCCeEEEEEccccccccCcEecCCceECCCCCCceEEEEEeCCCC
Confidence 45889999999999999999999999999999999999999999999999887888889999999999999999999999
Q ss_pred cEEeeCCCEEEEEEEeecccccEEEeccCCCccCCCCCCcccCC
Q 032989 86 DFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 129 (129)
Q Consensus 86 ~~~i~~G~riaQlv~~~~~~~~~~~v~~l~~t~Rg~~gfGSTG~ 129 (129)
++.|++|+|||||+|.++..+++++|+++++|+||+|||||||+
T Consensus 111 ~~~I~~G~RIaQlV~~~~~~~~~~~v~~l~~t~RG~~GFGSTG~ 154 (157)
T PLN02547 111 DFEVKVGDRIAQLILEKIVTPEVVEVEDLDATVRGAGGFGSTGV 154 (157)
T ss_pred CEEEcCCCEEEEEEEEEeeeccEEEecccCcccccCCCcCcCcc
Confidence 99999999999999999999999999999999999999999995
No 4
>PHA02703 ORF007 dUTPase; Provisional
Probab=100.00 E-value=2.9e-45 Score=268.08 Aligned_cols=124 Identities=59% Similarity=0.796 Sum_probs=120.0
Q ss_pred EeccCCeEEEEEcCccEEEcCCCEEEEEcCcEEEeCCCcEEEEEeCCCcccccceeecceEEcCCCccceEEEEEcCCCC
Q 032989 6 FFTIICYHCILRSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDV 85 (129)
Q Consensus 6 ~~t~~~aG~DL~~~~~~~i~p~~~~li~Tg~~v~ip~g~~~~i~~RSsl~~k~gl~v~~gvID~gY~Gei~i~l~N~~~~ 85 (129)
.+|+.||||||+++++++|+|+++++++||+++++|+||++++++|||++.|.++.+..|+||+||+|||++.+.|.+++
T Consensus 28 ~at~g~AGyDL~a~~d~vi~P~~~~lv~TGi~i~iP~g~~g~i~~RSsla~kg~i~v~~GvID~gYrGei~v~l~N~~~~ 107 (165)
T PHA02703 28 RGSPGAAGLDLCSACDCIVPAGCRCVVFTDLLIKLPDGCYGRIAPRSGLAVKHFIDVGAGVIDADYRGNVGVVLFNFGHN 107 (165)
T ss_pred CCCCCCcCccEecCCCeEECCCCEEEEeCCeEEEcCCCeEEEEECCccchhcCCEecccceECCCCcCceEEEEEECCCC
Confidence 47899999999999999999999999999999999999999999999999886688889999999999999999999999
Q ss_pred cEEeeCCCEEEEEEEeecccccEEEeccCCCccCCCCCCcccCC
Q 032989 86 DFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 129 (129)
Q Consensus 86 ~~~i~~G~riaQlv~~~~~~~~~~~v~~l~~t~Rg~~gfGSTG~ 129 (129)
++.|++|+|||||+|.++..+++++|++|++|+||++||||||+
T Consensus 108 ~~~I~~G~RIaQLVf~~~~~~~~~~v~~l~~t~RG~~GFGSTG~ 151 (165)
T PHA02703 108 DFEVKKGDRIAQLICERAAFPAVEEVACLDDTDRGAGGFGSTGS 151 (165)
T ss_pred CEEeCCCCEEEEEEEEEcccceEEEecccccCcCCCCCCCcCCC
Confidence 99999999999999999999999999999999999999999995
No 5
>TIGR00576 dut deoxyuridine 5'-triphosphate nucleotidohydrolase (dut). Changed role from 132 to 123. RTD
Probab=100.00 E-value=1.5e-44 Score=258.54 Aligned_cols=124 Identities=56% Similarity=0.883 Sum_probs=118.5
Q ss_pred EeccCCeEEEEEcCccEEEcCCCEEEEEcCcEEEeCCCcEEEEEeCCCcccccce--eecceEEcCCCccceEEEEEcCC
Q 032989 6 FFTIICYHCILRSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSM--DVGAGVIDADYRGPVGVILFNHS 83 (129)
Q Consensus 6 ~~t~~~aG~DL~~~~~~~i~p~~~~li~Tg~~v~ip~g~~~~i~~RSsl~~k~gl--~v~~gvID~gY~Gei~i~l~N~~ 83 (129)
..|++||||||+++++++|+|+++++++|++++.+|++|++++++|||++.|+|+ .+.+|+||+||+|||++.+.|++
T Consensus 15 ~~~~~~aGyDl~~~~d~~i~P~~~~lv~tg~~v~ip~g~~~~i~~RSsl~~k~gi~v~~~~GvID~gy~Gei~v~l~N~~ 94 (141)
T TIGR00576 15 YATEGAAGYDLYAAEDVTIPPGERALVPTGIAIELPDGYYGRVAPRSGLALKHGVTIDNSPGVIDSDYRGEIKVILINLG 94 (141)
T ss_pred CCCCCccCeeEecCCCeEECCCCEEEEEeCcEEecCCCEEEEEEecccCcccCCEEEeecCceECCCCCCceeEEEEeCC
Confidence 3589999999999999999999999999999999999999999999999988885 56799999999999999999999
Q ss_pred CCcEEeeCCCEEEEEEEeeccc-ccEEEeccCCCccCCCCCCcccCC
Q 032989 84 DVDFVVKVGDRIAQLIIEKIVT-PDVLEVENLDSTVRGEGGFGSTGV 129 (129)
Q Consensus 84 ~~~~~i~~G~riaQlv~~~~~~-~~~~~v~~l~~t~Rg~~gfGSTG~ 129 (129)
++++.|++|+|||||+|.++.. +++++++++++|+||++||||||+
T Consensus 95 ~~~~~i~~G~rIaQlV~~~~~~~~~~~~~~~~~~t~RG~~gfGSTg~ 141 (141)
T TIGR00576 95 KEDFTVKKGDRIAQLVVEKIVTVPEFEEVEELDETERGEGGFGSTGV 141 (141)
T ss_pred CCCEEEcCCCEEEEEEEEeccccccEEEeCccCCccccCCCCCCCCC
Confidence 9999999999999999999988 789999999999999999999996
No 6
>PRK00601 dut deoxyuridine 5'-triphosphate nucleotidohydrolase; Provisional
Probab=100.00 E-value=1.3e-44 Score=261.21 Aligned_cols=124 Identities=45% Similarity=0.681 Sum_probs=119.1
Q ss_pred EeccCCeEEEEEcCc--cEEEcCCCEEEEEcCcEEEeCCCcEEEEEeCCCcccccceee--cceEEcCCCccceEEEEEc
Q 032989 6 FFTIICYHCILRSAA--ETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFN 81 (129)
Q Consensus 6 ~~t~~~aG~DL~~~~--~~~i~p~~~~li~Tg~~v~ip~g~~~~i~~RSsl~~k~gl~v--~~gvID~gY~Gei~i~l~N 81 (129)
..|++||||||++++ +++|+|+++++|+||+++++|+||++++++|||+++|+||.+ .+|+||+||+|||++.+.|
T Consensus 22 ~~~~~daG~Dl~~~~~~~i~i~P~~~~lv~tg~~v~~p~~~~~~i~~RSsla~k~Gl~v~~~~GvID~gy~Gei~i~l~N 101 (150)
T PRK00601 22 YATEGSAGLDLRACLDEPVTLAPGERALVPTGLAIHIPDGYEAQILPRSGLAHKHGIVLGNLPGTIDSDYRGELKVSLWN 101 (150)
T ss_pred cCCCCCcCEeEEecCCCCCEECCCCeEEEEcCEEEECCCCeEEEEEeCCcccccCCEEEecCcceeCCCCCCceEEEEEe
Confidence 468899999999987 899999999999999999999999999999999998889876 5899999999999999999
Q ss_pred CCCCcEEeeCCCEEEEEEEeecccccEEEeccCCCccCCCCCCcccCC
Q 032989 82 HSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 129 (129)
Q Consensus 82 ~~~~~~~i~~G~riaQlv~~~~~~~~~~~v~~l~~t~Rg~~gfGSTG~ 129 (129)
.+++++.|++|+|||||+|+++..++|++|++|++|+||++||||||+
T Consensus 102 ~~~~~v~I~~G~rIaQlv~~~~~~~~~~~~~~l~~t~RG~~gFGSTG~ 149 (150)
T PRK00601 102 RGQEPFTIEPGERIAQLVIVPVVQAEFEEVEEFDETERGAGGFGSTGR 149 (150)
T ss_pred CCCCCEEECCCCEEEEEEEecccccceEEecccCcccccCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999995
No 7
>PTZ00143 deoxyuridine 5'-triphosphate nucleotidohydrolase; Provisional
Probab=100.00 E-value=4.8e-44 Score=259.09 Aligned_cols=123 Identities=30% Similarity=0.377 Sum_probs=117.4
Q ss_pred EeccCCeEEEEEcCccEEEcCCCEEEEEcCcEEEeCC---------CcEEEEEeCCCcccccceee--cceEEcCCCccc
Q 032989 6 FFTIICYHCILRSAAETKVPARGKALVPTDLSIAIPE---------GTYARIAPRSGLAWKHSMDV--GAGVIDADYRGP 74 (129)
Q Consensus 6 ~~t~~~aG~DL~~~~~~~i~p~~~~li~Tg~~v~ip~---------g~~~~i~~RSsl~~k~gl~v--~~gvID~gY~Ge 74 (129)
..|++||||||+++++++|+|+++++|+||+++++|+ ||++++++|||++ |+|+.+ ..|+||+||+||
T Consensus 21 ~~~~~dAG~DL~a~~~~~i~Pg~~~~V~tGi~i~~p~~~~~~~~~~g~~~~i~~RSsla-~~gl~l~n~~GvID~gYrGe 99 (155)
T PTZ00143 21 TFHEGDSGLDLFIVKDQTIKPGETAFIKLGIKAAAFQKDEDGSDGKNVSWLLFPRSSIS-KTPLRLANSIGLIDAGYRGE 99 (155)
T ss_pred cCCCCccccCEecCCCeEECCCCEEEEECCeEEEcccccccccCCCCEEEEEEccCccc-ccCeEecccCCeECCCCCcc
Confidence 4789999999999999999999999999999999986 9999999999999 668765 599999999999
Q ss_pred eEEEEEcCCCCcEEeeCCCEEEEEEEeecccccEEEeccCCCccCCCCCCcccCC
Q 032989 75 VGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 129 (129)
Q Consensus 75 i~i~l~N~~~~~~~i~~G~riaQlv~~~~~~~~~~~v~~l~~t~Rg~~gfGSTG~ 129 (129)
|++.+.|.+++++.|++|+|||||+|+++..++|++|+++++|+||+|||||||+
T Consensus 100 i~v~l~N~~~~~~~I~~G~RIaQlVi~~~~~~~~~~v~~l~~t~RG~gGFGSTG~ 154 (155)
T PTZ00143 100 LIAAVDNIKDEPYTIKKGDRLVQLVSFDGEPITFELVDELDETTRGEGGFGSTGR 154 (155)
T ss_pred EEEEEEECCCCCeEECCCCEEEEEEEEecceeeEEEeCcCCCccccCCccCCCCC
Confidence 9999999999999999999999999999999999999999999999999999995
No 8
>PRK13956 dut deoxyuridine 5'-triphosphate nucleotidohydrolase; Provisional
Probab=100.00 E-value=6.7e-42 Score=246.08 Aligned_cols=119 Identities=29% Similarity=0.354 Sum_probs=109.3
Q ss_pred EeccCCeEEEEEcCccEEEcCCCEEEEEcCcEEEeCCCcEEEEEeCCCcccccceee--cceEEcCCCc------cceEE
Q 032989 6 FFTIICYHCILRSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYR------GPVGV 77 (129)
Q Consensus 6 ~~t~~~aG~DL~~~~~~~i~p~~~~li~Tg~~v~ip~g~~~~i~~RSsl~~k~gl~v--~~gvID~gY~------Gei~i 77 (129)
..|+.||||||+++++++|+|++.++|+||+++++|+||++++++|||+++|+||.+ .+|+||+||+ |+|++
T Consensus 21 r~t~~sAG~DL~a~~~~~i~p~~~~lv~TGi~i~lP~g~~~~I~~RSsla~k~Gl~l~n~~GvIDsdYrGe~~~~G~i~v 100 (147)
T PRK13956 21 RETAHAAGYDLKVAERTVIAPGEIKLVPTGVKAYMQPGEVLYLYDRSSNPRKKGLVLINSVGVIDGDYYGNPANEGHIFA 100 (147)
T ss_pred cCCCCCCCcccccCCCeEECCCCEEEEECCeEEECCCCeEEEEecCchhhhhCCEEEcCcCCeEcCCCCCCCCCCcEEEE
Confidence 468999999999999999999999999999999999999999999999998889864 6999999997 56999
Q ss_pred EEEcCCCCcEEeeCCCEEEEEEEeecccccEEEeccCCCccCCCCCCcccCC
Q 032989 78 ILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 129 (129)
Q Consensus 78 ~l~N~~~~~~~i~~G~riaQlv~~~~~~~~~~~v~~l~~t~Rg~~gfGSTG~ 129 (129)
.+.|.+++++.|++|||||||+|.|+..+++. ..++||+|||||||+
T Consensus 101 ~l~N~~~~~~~I~~GdRIAQlv~~p~~~~~~~-----~~~~r~~gGFGSTG~ 147 (147)
T PRK13956 101 QMKNITDQEVVLEVGERIVQGVFMPFLIADGD-----QADGERTGGFGSTGK 147 (147)
T ss_pred EEEeCCCCCEEECCCCEEEEEEEEEEEEcccc-----ccccccCCCCCCCCC
Confidence 99999999999999999999999999765543 246799999999996
No 9
>PF00692 dUTPase: dUTPase; InterPro: IPR008180 Synonym(s): dUTP diphosphatase, Deoxyuridine-triphosphatase The essential enzyme dUTP pyrophosphatase (3.6.1.23 from EC) is specific for dUTP and is critical for the fidelity of DNA replication and repair. dUTPase hydrolyzes dUTP to dUMP and pyrophosphate, simultaneously reducing dUTP levels and providing the dUMP for dTTP biosynthesis. dUTPase decreases the intracellular concentration of dUPT so that uracil cannot be incorporated into DNA []. The crystal structure of human dUTPase reveals that each subunit of the dUTPase trimer folds into an eight-stranded jelly-roll beta barrel, with the C-terminal beta strands interchanged among the subunits. The structure is similar to that of the Escherichia coli enzyme, despite low sequence homology between the two enzymes []. Other enzymes like deoxycytidine triphosphate deaminase (dCTP) (3.5.4.13 from EC) that specifically bind uridine also belong to this group suggesting that the signature may recognise a putative uridine-binding motif. Some retroviruses encode dUTPases. Retroviral dUTPase is synthesised as part of POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, dUTPase and RNase H. ; GO: 0016787 hydrolase activity, 0046080 dUTP metabolic process; PDB: 4DHK_A 1DUC_A 1DUN_A 3LQW_A 2BT1_A 2WE1_A 2WE0_A 2WE2_A 2BSY_A 2WE3_A ....
Probab=100.00 E-value=1.2e-39 Score=228.97 Aligned_cols=121 Identities=45% Similarity=0.659 Sum_probs=112.7
Q ss_pred eccCCeEEEEEcCccEEEcCCCEEEEEcCcEEEeCCCcEEEEEeCCCcccccceeecceEEcCCCccceEEEEEcCCCCc
Q 032989 7 FTIICYHCILRSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVD 86 (129)
Q Consensus 7 ~t~~~aG~DL~~~~~~~i~p~~~~li~Tg~~v~ip~g~~~~i~~RSsl~~k~gl~v~~gvID~gY~Gei~i~l~N~~~~~ 86 (129)
.+++||||||+++++++|+|+++++++|++++.+|+++++++++|||++ ++|+.+.+|+||+||+|+|++.+.|.++.+
T Consensus 9 ~~~~~ag~Dl~~~~~~~i~p~~~~~v~t~~~~~~p~~~~~~i~~RSsl~-~~gl~v~~gvid~~y~G~i~i~i~N~s~~~ 87 (129)
T PF00692_consen 9 ARPGDAGYDLYAPEDFVIPPGETVLVPTGEEINIPPGYYALILPRSSLA-RKGLIVHPGVIDPGYRGEIKIIIYNHSDEP 87 (129)
T ss_dssp SSTTSSSEEEE-SSSEEEETTEEEEEEEEEEEE-STTEEEEEEE-HHHH-HHTEEEETEEEETTBESEEEEEEEESSSSS
T ss_pred CCCCceeEEEEcCCCEEECCCCEEEEEeCeEEECCCCcEEEEecCchHH-hcCccccCcccCCCcccceEEEEEecccee
Confidence 5789999999999999999999999999999999999999999999997 559998889999999999999999999999
Q ss_pred EEeeCCCEEEEEEEeecccccEEEeccCCCccCCCCCCcccC
Q 032989 87 FVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTG 128 (129)
Q Consensus 87 ~~i~~G~riaQlv~~~~~~~~~~~v~~l~~t~Rg~~gfGSTG 128 (129)
+.|++|+|||||+|.++..+..+++++++.+.||++||||||
T Consensus 88 ~~i~~G~riaQlv~~~~~~~~~~~~~~~~~~~rg~~Gfgstg 129 (129)
T PF00692_consen 88 IRIEKGDRIAQLVFIPLSTPPVEPVEEFSNTERGEGGFGSTG 129 (129)
T ss_dssp EEEETTSEEEEEEEEEBESEEEEEESSTTTSSSTTTSTTTT-
T ss_pred ccccCCCEEEEEEEEecCccceEEccccCCccCCCCCCCCCC
Confidence 999999999999999999988889999999999999999998
No 10
>PHA03124 dUTPase; Provisional
Probab=100.00 E-value=7.9e-38 Score=249.60 Aligned_cols=119 Identities=26% Similarity=0.276 Sum_probs=112.6
Q ss_pred eccCCeEEEEEcCccEEEcCCCEEEEEcCcEEEeCCCcEEEEEeCCCcccccceee-cceEEcCCCccceEEEEEcCCCC
Q 032989 7 FTIICYHCILRSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV-GAGVIDADYRGPVGVILFNHSDV 85 (129)
Q Consensus 7 ~t~~~aG~DL~~~~~~~i~p~~~~li~Tg~~v~ip~g~~~~i~~RSsl~~k~gl~v-~~gvID~gY~Gei~i~l~N~~~~ 85 (129)
-|.+||||||+++++++|+|+++++|+||+++.+|++|++++++|||+++| |+.+ ..|+||+|| +++.++|.+++
T Consensus 286 KtaGDAGyDLyA~EDvvI~PGEt~lIpTGIaIeIP~G~~glI~pRSGLAlK-GILV~~~GVIDSDY---I~ViL~Nlsde 361 (418)
T PHA03124 286 KEAEDAGYDIRAPEDCTILPGGSTRIILPQKLACGKFRAAFILGRSSMNLK-GLLVDPEHVQDDDW---ISFNITNIRDA 361 (418)
T ss_pred CCCccccccCccCCCeEECCCCeEEEECCEEEecCCCeEEEEEeccccccC-CeEeCCCceECCCc---EEEEEEECCCC
Confidence 478899999999999999999999999999999999999999999999988 7765 479999999 89999999999
Q ss_pred cEEeeCCCEEEEEEEee--------cccccEEEeccCCC-----ccCCCCCCcccCC
Q 032989 86 DFVVKVGDRIAQLIIEK--------IVTPDVLEVENLDS-----TVRGEGGFGSTGV 129 (129)
Q Consensus 86 ~~~i~~G~riaQlv~~~--------~~~~~~~~v~~l~~-----t~Rg~~gfGSTG~ 129 (129)
++.|++|+|||||+|.+ +..++|++|++|++ |+||+|||||||+
T Consensus 362 p~tI~kGDRIAQLVIlP~r~e~l~~v~~~e~~eVeEL~e~~~~~TeRGeGGFGSTG~ 418 (418)
T PHA03124 362 AAFFHAGDRIAQLIALEDKLEFLGEPDALPWKIVNSVQDEKKNLSSRGDGGFGSSGK 418 (418)
T ss_pred CEEECCCCEEEEEEEeecccccccceeecceEEeeeccccCCCcccccCCCCCCCCC
Confidence 99999999999999998 67889999999987 8999999999996
No 11
>KOG3370 consensus dUTPase [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.1e-38 Score=220.57 Aligned_cols=122 Identities=66% Similarity=1.026 Sum_probs=119.6
Q ss_pred ccCCeEEEEEcCccEEEcCCCEEEEEcCcEEEeCCCcEEEEEeCCCcccccceeecceEEcCCCccceEEEEEcCCCCcE
Q 032989 8 TIICYHCILRSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDF 87 (129)
Q Consensus 8 t~~~aG~DL~~~~~~~i~p~~~~li~Tg~~v~ip~g~~~~i~~RSsl~~k~gl~v~~gvID~gY~Gei~i~l~N~~~~~~ 87 (129)
++..|||||++.++.+++|....+|+|++.+++|.++++.+.+||++|+|+++.+..|+|||+|+||+.+.|+|+++..+
T Consensus 19 s~~aaGydl~sa~~~~vpa~gk~~V~td~q~~vP~g~ygRvaprsglA~k~~I~~gagvVd~dyrgeV~v~LfN~~~~~F 98 (140)
T KOG3370|consen 19 SAGAAGYDLYSAQDGTVPARGKAVVDTDLQIAVPSGYYGRVAPRSGLAWKHFIDVGAGVVDPDYRGEVGVLLFNHSDRDF 98 (140)
T ss_pred CccccccchhhhcccccCcccceeccccceeecCcceeeeecccccchhhccccccCceecccccceeEEEEecCCCcce
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCEEEEEEEeecccccEEEeccCCCccCCCCCCcccCC
Q 032989 88 VVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 129 (129)
Q Consensus 88 ~i~~G~riaQlv~~~~~~~~~~~v~~l~~t~Rg~~gfGSTG~ 129 (129)
.+++|||||||++.++..++.+.|+.|++|+||++||||||+
T Consensus 99 ~~k~Gdriaqli~~~i~~~~i~~v~sLe~t~Rg~~Gfgstg~ 140 (140)
T KOG3370|consen 99 EYKKGDRIAQLIVEKIVTPEIVLVSSLEATERGAGGFGSTGV 140 (140)
T ss_pred eeecCCcceeeEEEecCCCceehhhhHHHHhhhccCcCCCCC
Confidence 999999999999999999999999999999999999999995
No 12
>PHA03126 dUTPase; Provisional
Probab=100.00 E-value=1.1e-32 Score=217.08 Aligned_cols=118 Identities=19% Similarity=0.252 Sum_probs=106.1
Q ss_pred cCCeEEEEEcCccEEEcCCCEEEEEcCcEEEeC-CCcEEEEEeCCCcccccceeecceEEcCCCccceEEEEEcCCCCcE
Q 032989 9 IICYHCILRSAAETKVPARGKALVPTDLSIAIP-EGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDF 87 (129)
Q Consensus 9 ~~~aG~DL~~~~~~~i~p~~~~li~Tg~~v~ip-~g~~~~i~~RSsl~~k~gl~v~~gvID~gY~Gei~i~l~N~~~~~~ 87 (129)
.+||||||+++++++|+|+++++|+||+++.+| ++|++++++|||+++| |+.+.++.||+| ++|++.|+|++++++
T Consensus 175 ~gDAGyDL~A~edvvI~Pge~~lV~TGIai~ip~~g~~~~I~pRSGLA~K-GL~V~~g~id~G--eeI~V~L~N~g~e~~ 251 (326)
T PHA03126 175 VEDAGYDISAPTDATIEPDESHFVDLPIVFASSNPAVTPCIFGRSSMNRR-GLIVLPTRWVAG--RTCCFFILNVNKYPV 251 (326)
T ss_pred CCccccCCcCCCCcEECCCCEEEEEcCeEEEcCCCCeEEEEeCccccccC-CeEecCcceecC--CeEEEEEEeCCCCCE
Confidence 479999999999999999999999999999997 5999999999999988 999888998877 379999999999999
Q ss_pred EeeCCCEEEEEEEeeccc-----------------------------ccEEEeccCC----CccCCCCCCcccCC
Q 032989 88 VVKVGDRIAQLIIEKIVT-----------------------------PDVLEVENLD----STVRGEGGFGSTGV 129 (129)
Q Consensus 88 ~i~~G~riaQlv~~~~~~-----------------------------~~~~~v~~l~----~t~Rg~~gfGSTG~ 129 (129)
.|++|||||||||++... +.|.++.+++ .++||++||||||.
T Consensus 252 ~I~kGDRIAQLVIm~~~~~~~~p~~~~~~~~f~~~~~~~~~~~~~~p~~w~ft~~fd~eap~S~Rg~~GFGSTG~ 326 (326)
T PHA03126 252 SITKGQRVAQLLLTEDIDDALIPTTVNYDTPFPTYSPTGATKAPQSPVLWKFTTDFDREAPSSLRADGGFGSTGL 326 (326)
T ss_pred EECCCCEEEEEEEcccchhhcCCCccCCCCcccccCCCccccCCCCCcceEEEeeccccCCcccccCCCCCCCCC
Confidence 999999999999998511 2677777774 68999999999995
No 13
>PHA03123 dUTPase; Provisional
Probab=100.00 E-value=1.6e-32 Score=219.86 Aligned_cols=118 Identities=22% Similarity=0.213 Sum_probs=105.3
Q ss_pred cCCeEEEEEcCccEEEcCCCEEEEEcCc--EEEeCC-CcEEEEEeCCCcccccceeecceEEcCCCccceEEEEEcCCCC
Q 032989 9 IICYHCILRSAAETKVPARGKALVPTDL--SIAIPE-GTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDV 85 (129)
Q Consensus 9 ~~~aG~DL~~~~~~~i~p~~~~li~Tg~--~v~ip~-g~~~~i~~RSsl~~k~gl~v~~gvID~gY~Gei~i~l~N~~~~ 85 (129)
.+||||||+++++++|+||++++|+||+ .+.+|+ ||++++++|||++ |+||.+.+|+||+||+| ++.++|++++
T Consensus 242 ~gDAGyDL~ApeDvtI~PGEt~lV~TGI~~~i~i~~pGy~a~I~pRSGLA-kKGLiV~~GvIDsGy~G--~V~L~N~~~e 318 (402)
T PHA03123 242 QEDAGYDICAPFEITLKANEFIKITLPFIQDLDLNHPNIDAYIFGRSSKN-RIGIIVCPTAWIAGEHC--EFYIFNATGD 318 (402)
T ss_pred CCCccccccCCCCcEECCCCEEEEeCCccceeccCCCCEEEEEEcccccc-cCCeEeCCceEcCCCcc--EEEEEECCCC
Confidence 5899999999999999999999999998 466654 9999999999998 55999999999999998 6888999999
Q ss_pred cEEeeCCCEEEEEEEeeccc-----------------------------------ccEEEeccCC----CccCCCCCCcc
Q 032989 86 DFVVKVGDRIAQLIIEKIVT-----------------------------------PDVLEVENLD----STVRGEGGFGS 126 (129)
Q Consensus 86 ~~~i~~G~riaQlv~~~~~~-----------------------------------~~~~~v~~l~----~t~Rg~~gfGS 126 (129)
++.|++|+|||||+|++... |.|.+..+|+ .|+||.+||||
T Consensus 319 pi~IkkGDRIAQLVfm~~~~~~~~~~~~~~~~~~~fP~~~~~~~~~~~~~~p~~~P~w~fT~~fD~~AppS~Rg~~GFGS 398 (402)
T PHA03123 319 DIIIKPGDKIAQVLLIDHNNQSIHIHHDIINNFEAFPSAIFGKCGIEGLNSPDVYPKWHFTKMFDLIAPPSDRGNKGFGS 398 (402)
T ss_pred CeEeCCCCEEEEEEEEEcccccCCCCCCcccccCCCCCCCCCcccCCcccCCCCCcceEEeecccccCCcccccCCCCCC
Confidence 99999999999999998632 3477777665 68999999999
Q ss_pred cCC
Q 032989 127 TGV 129 (129)
Q Consensus 127 TG~ 129 (129)
||+
T Consensus 399 Tg~ 401 (402)
T PHA03123 399 TDK 401 (402)
T ss_pred CCC
Confidence 996
No 14
>PHA03127 dUTPase; Provisional
Probab=99.97 E-value=8.2e-32 Score=213.03 Aligned_cols=117 Identities=21% Similarity=0.213 Sum_probs=103.9
Q ss_pred CCeEEEEEcCccEEEcCCCEEEEEcCcEEEe-CCCcEEEEEeCCCcccccceeecceEEcCCCccceEEEEEcCCCCcEE
Q 032989 10 ICYHCILRSAAETKVPARGKALVPTDLSIAI-PEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFV 88 (129)
Q Consensus 10 ~~aG~DL~~~~~~~i~p~~~~li~Tg~~v~i-p~g~~~~i~~RSsl~~k~gl~v~~gvID~gY~Gei~i~l~N~~~~~~~ 88 (129)
+||||||+++++++|+|+++.+|++++.... +..+++++++|||+++| |+.+.+++||+|| ++++.+.|++++++.
T Consensus 173 gdAGyDL~A~edvvI~Pge~~~V~lpv~~~~~~~~~~~~I~pRSGLA~K-GIiV~~gvID~G~--ei~V~L~N~~~e~~~ 249 (322)
T PHA03127 173 EDAGYDIAMPYTAVLAPGENLHVRLPVAYAAGAHAAAPYVFGRSSLNLR-GIVVLPTAWPPGE--PCRFVIRNVTQEPVV 249 (322)
T ss_pred CCccccCcCCCCeEECCCCEEEEECCCcccCCCccceEEEEccCCcccC-CEEecCccCcCCC--eEEEEEEeCCCCCEE
Confidence 9999999999999999999999999986542 33457899999999988 9999999999887 889999999999999
Q ss_pred eeCCCEEEEEEEeec----------------------------ccccEEEeccCC----CccCCCCCCcccCC
Q 032989 89 VKVGDRIAQLIIEKI----------------------------VTPDVLEVENLD----STVRGEGGFGSTGV 129 (129)
Q Consensus 89 i~~G~riaQlv~~~~----------------------------~~~~~~~v~~l~----~t~Rg~~gfGSTG~ 129 (129)
|++|||||||+|.+. ..+.|.++.+|+ .|+||++||||||.
T Consensus 250 I~kGDRIAQLVf~~~~~~~ip~~~~~~~~f~~~~~~~~~~~~~~~~~w~~t~~~~~~ap~S~Rg~~GFGSTg~ 322 (322)
T PHA03127 250 AAAGQRVAQLLLLEEPLEWLPTELNDREPFPTTPRAAPPAPMAHRLRWRFVADFAAVAPSSARGDRGFGSTGL 322 (322)
T ss_pred ECCCCEEEEEEEccccccccCCcCCCCCccccccccCCCCCCCCCCcEEEEehhcccCCcccccCCCCCCCCC
Confidence 999999999999931 226899998887 79999999999995
No 15
>PHA03130 dUTPase; Provisional
Probab=99.97 E-value=8.8e-31 Score=207.47 Aligned_cols=116 Identities=24% Similarity=0.351 Sum_probs=103.0
Q ss_pred CCeEEEEEcCccEEEcCCCEEEEEcCcEEEeCC-CcEE-EEEeCCCcccccceeecceEEcCCCccce-EEEEEcCCCCc
Q 032989 10 ICYHCILRSAAETKVPARGKALVPTDLSIAIPE-GTYA-RIAPRSGLAWKHSMDVGAGVIDADYRGPV-GVILFNHSDVD 86 (129)
Q Consensus 10 ~~aG~DL~~~~~~~i~p~~~~li~Tg~~v~ip~-g~~~-~i~~RSsl~~k~gl~v~~gvID~gY~Gei-~i~l~N~~~~~ 86 (129)
+||||||+++++++|+|+++++|+||+++++|+ ++++ +|++||||++| |+.+.+|.||+ ||+ ++.|+|+++++
T Consensus 212 gDAGyDL~A~edVvI~PGet~lV~TGLaIeIP~~G~~g~~I~PRSGLA~K-GI~V~pG~id~---GEI~~ViL~N~g~ep 287 (368)
T PHA03130 212 EDAGIDIVVHKRVEVPAGGTVVIQPSLRVLLAAGGPEAYYVLGRSSLNAR-GVLVTPTRWLP---GRQCAFSVHNITGAP 287 (368)
T ss_pred CccCccccCCCCeEECCCCEEEEcCCeEEEcCCCCceEEEEeCccchhhC-CeeecccEEcc---CCEEEEEEEECCCCC
Confidence 699999999999999999999999999999985 8887 99999999988 89888888765 887 58999999999
Q ss_pred EEeeCCCEEEEEEEeecc----------------------------------cccEEEeccCC----CccCCCCCCcccC
Q 032989 87 FVVKVGDRIAQLIIEKIV----------------------------------TPDVLEVENLD----STVRGEGGFGSTG 128 (129)
Q Consensus 87 ~~i~~G~riaQlv~~~~~----------------------------------~~~~~~v~~l~----~t~Rg~~gfGSTG 128 (129)
++|++|||||||||.+-. .+.|++..+|| .++||++||||||
T Consensus 288 ~tIekGDRIAQLVI~~~~~l~wiP~~~~~~~~~f~~y~~~~~~~~~~~~~~~~p~w~ft~~fd~eAp~S~R~~~GFGSTG 367 (368)
T PHA03130 288 VTLEAGSKVAQLLVAGSDALPWVPPDNVPGDGALRAYPRGVSPARATPAPPALPCLVFTAEFDAEAPPSERGTGGFGSTG 367 (368)
T ss_pred EEECCCCEEEEEEEeecccCceeCCCCCCCCCccccCcCCCCCCCCCCCCCCCceeeeeccccccCCcccccCCCCCCCC
Confidence 999999999999998731 14677777775 6899999999999
Q ss_pred C
Q 032989 129 V 129 (129)
Q Consensus 129 ~ 129 (129)
.
T Consensus 368 i 368 (368)
T PHA03130 368 I 368 (368)
T ss_pred C
Confidence 5
No 16
>PHA03129 dUTPase; Provisional
Probab=99.97 E-value=3.9e-30 Score=208.68 Aligned_cols=118 Identities=21% Similarity=0.262 Sum_probs=104.8
Q ss_pred cCCeEEEEEcCccEEEcCCCEEEEEcCcEEE-eCCCcEEEEEeCCCcccccceeecceEEcCCCccceEEEEEcCCCCcE
Q 032989 9 IICYHCILRSAAETKVPARGKALVPTDLSIA-IPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDF 87 (129)
Q Consensus 9 ~~~aG~DL~~~~~~~i~p~~~~li~Tg~~v~-ip~g~~~~i~~RSsl~~k~gl~v~~gvID~gY~Gei~i~l~N~~~~~~ 87 (129)
++||||||+++++++|+|++++.|.+.+... +|+|+++++++|||+++| |+.+.++.||+| +++++.+.|.+++++
T Consensus 285 ~gdAGyDL~A~edvvI~Pge~~~Iai~i~~~~iP~G~~g~I~pRSGLA~K-GIiVl~g~id~G--eeI~V~L~N~g~e~v 361 (436)
T PHA03129 285 LEDAGYDIPAPRDIELEPLSSTTIKIQQRYNCKDSSVIPCIFGRSSMNLR-GLIVLPSRWLPN--SWLTLTICNLTEKTV 361 (436)
T ss_pred CCccccCccCCCCeEECCCCEEEEEEecccccCCCCeEEEEECccccccC-CeEeccccEeCC--CeEEEEEEeCCCCCe
Confidence 5899999999999999999999988776555 699999999999999988 998888888876 469999999999999
Q ss_pred EeeCCCEEEEEEEeecc-----------------------------cccEEEeccCC----CccCCCCCCcccCC
Q 032989 88 VVKVGDRIAQLIIEKIV-----------------------------TPDVLEVENLD----STVRGEGGFGSTGV 129 (129)
Q Consensus 88 ~i~~G~riaQlv~~~~~-----------------------------~~~~~~v~~l~----~t~Rg~~gfGSTG~ 129 (129)
.|++|||||||+|.+.. .+.|.++.+++ .++||++||||||.
T Consensus 362 ~I~kGDRIAQLVIi~~~~~~~ip~~~~~~~~fP~~~~~~~p~~~~~~p~w~ft~~fd~eap~S~Rg~~GFGSTG~ 436 (436)
T PHA03129 362 FIKAGDRIAQLLLVDQDAATLIPPENNTTDCFPTVGKCSRPYVTYGEPVWRETLHFDTEAMTSERQEGGFGSTGI 436 (436)
T ss_pred EeCCCCEEEEEEEeecccccccCCCCCCCCCCCCCCCCcCCcCCCCCcceEEEehhcccCCcccccCCCCCCCCC
Confidence 99999999999999752 14788887774 68999999999995
No 17
>cd07557 trimeric_dUTPase Trimeric dUTP diphosphatases. Trimeric dUTP diphosphatases, or dUTPases, are the most common family of dUTPase, found in bacteria, eukaryotes, and archaea. They catalyze the hydrolysis of the dUTP-Mg complex (dUTP-Mg) into dUMP and pyrophosphate. This reaction is crucial for the preservation of chromosomal integrity as it removes dUTP and therefore reduces the cellular dUTP/dTTP ratio, and prevents dUTP from being incorporated into DNA. It also provides dUMP as the precursor for dTTP synthesis via the thymidylate synthase pathway. dUTPases are homotrimeric, except some monomeric viral dUTPases, which have been shown to mimic a trimer. Active sites are located at the subunit interface.
Probab=99.97 E-value=4.3e-30 Score=170.54 Aligned_cols=88 Identities=40% Similarity=0.597 Sum_probs=85.2
Q ss_pred eEEEEEcCcc---EEEcCCCEEEEEcCcEEEeCCCcEEEEEeCCCcccccceeecc-eEEcCCCccceEEEEEcCCCCcE
Q 032989 12 YHCILRSAAE---TKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGA-GVIDADYRGPVGVILFNHSDVDF 87 (129)
Q Consensus 12 aG~DL~~~~~---~~i~p~~~~li~Tg~~v~ip~g~~~~i~~RSsl~~k~gl~v~~-gvID~gY~Gei~i~l~N~~~~~~ 87 (129)
|||||+++++ ++|+|+++++++|++++.+|+++++++++|||++. +|+.+.. |+|||||+|++++.+.|.++.++
T Consensus 1 ag~Dl~~~~~~~~~~i~P~~~~~v~t~~~i~~p~~~~~~i~~RSs~~~-~Gi~v~~~g~iD~gy~G~l~v~l~N~~~~~~ 79 (92)
T cd07557 1 AGYDLRLGEDFEGIVLPPGETVLVPTGEAIELPEGYVGLVFPRSSLAR-KGITVHNAGVIDPGYRGEITLELYNLGPEPV 79 (92)
T ss_pred CcEEEEcCCcCCCEEEcCCCEEEEEEeEEEEcCCCeEEEEEcCchhhc-CCEEecCCcccCCCCcceEEEEEEECCCCCE
Confidence 7999999999 99999999999999999999999999999999985 6999987 99999999999999999999999
Q ss_pred EeeCCCEEEEEEE
Q 032989 88 VVKVGDRIAQLII 100 (129)
Q Consensus 88 ~i~~G~riaQlv~ 100 (129)
.|++|+|||||+|
T Consensus 80 ~i~~G~~iaQlvf 92 (92)
T cd07557 80 VIKKGDRIAQLVF 92 (92)
T ss_pred EECCCCEEEEEEC
Confidence 9999999999986
No 18
>PHA03131 dUTPase; Provisional
Probab=99.96 E-value=4.8e-29 Score=195.95 Aligned_cols=91 Identities=20% Similarity=0.149 Sum_probs=86.0
Q ss_pred cCCeEEEEEcCccEEEcCCCEEEEEcCcEE-EeCCCcEEEEEeCCCcccccceeecceEEcCCCccceEEEEEcCCCCcE
Q 032989 9 IICYHCILRSAAETKVPARGKALVPTDLSI-AIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDF 87 (129)
Q Consensus 9 ~~~aG~DL~~~~~~~i~p~~~~li~Tg~~v-~ip~g~~~~i~~RSsl~~k~gl~v~~gvID~gY~Gei~i~l~N~~~~~~ 87 (129)
++||||||+++++++|+|+++++|+||+.+ ++|++|++++++|||++.| ||.+.++.+| +||+++.+.|.+++++
T Consensus 130 ~~dAG~DL~a~~~~~I~P~~~~~V~tg~~~~~~p~~~~~~I~~RSsla~k-Gl~v~~~~~~---~Gei~v~l~N~~~~~v 205 (286)
T PHA03131 130 PDDAGFDVSLPQDLVIFPTTTFTFTLSLCCPPISPHFVPVIFGRSGLASK-GLTVKPTKWR---RSGLQLKLYNYTDETI 205 (286)
T ss_pred cccCCccEEeCCCEEECCCCEEEEeCCeEEecCCCCEEEEEEcCchhhcC-CeEEcCCeEE---CCEEEEEEEECCCCCE
Confidence 569999999999999999999999999995 9999999999999999977 9988888777 7999999999999999
Q ss_pred EeeCCCEEEEEEEeec
Q 032989 88 VVKVGDRIAQLIIEKI 103 (129)
Q Consensus 88 ~i~~G~riaQlv~~~~ 103 (129)
.|++|+|||||+|.+.
T Consensus 206 ~I~~G~RIAQlVf~~~ 221 (286)
T PHA03131 206 FLPAGSRICQVVFMHK 221 (286)
T ss_pred EECCCCEEEEEEEEec
Confidence 9999999999999985
No 19
>PHA01707 dut 2'-deoxyuridine 5'-triphosphatase
Probab=99.94 E-value=3.3e-26 Score=166.51 Aligned_cols=96 Identities=24% Similarity=0.335 Sum_probs=87.6
Q ss_pred cCCeEEEEEcC---------------ccEEEcCCCEEEEEcCcEEEeCCCcEEEEEeCCCcccccceeecceEEcCCCcc
Q 032989 9 IICYHCILRSA---------------AETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRG 73 (129)
Q Consensus 9 ~~~aG~DL~~~---------------~~~~i~p~~~~li~Tg~~v~ip~g~~~~i~~RSsl~~k~gl~v~~gvID~gY~G 73 (129)
...++|||+.. +.++|+||+.++++|++++++|+++++++.+|||++. .|+.+..++|||||+|
T Consensus 27 v~p~s~DlrLg~~~~~~~~~~~~~~~~~~~l~Pg~~~l~~T~E~i~lP~~~~~~i~~RSslaR-~Gl~v~~~~iD~Gy~G 105 (158)
T PHA01707 27 IRENGVDLKIGNEIVRIKENMEKEVGDEFIIYPHEHVLLTTKEYIKLPNDIIAFCNLRSTFAR-KGLLIPPTIVDAGFEG 105 (158)
T ss_pred cCCceEEEEecCeEEEEecccccccCCcEEECCCCEEEEEEeEEEECCCCEEEEEECcchhhh-CCEEecceeECCCCCC
Confidence 34679999873 4678999999999999999999999999999999995 4999999999999999
Q ss_pred ceEEEEEcCCCCcEEeeCCCEEEEEEEeecccc
Q 032989 74 PVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTP 106 (129)
Q Consensus 74 ei~i~l~N~~~~~~~i~~G~riaQlv~~~~~~~ 106 (129)
++++++.| +..++.|++|+|||||+|+++..+
T Consensus 106 ~i~lel~n-~~~pi~i~~G~rIaQlvf~~~~~~ 137 (158)
T PHA01707 106 QLTIELVG-SSIPVKLKSGERFLHLIFARTLTP 137 (158)
T ss_pred EEEEEEEe-CCCCEEECCCCEEEEEEEEEcccc
Confidence 99999999 679999999999999999998754
No 20
>TIGR02274 dCTP_deam deoxycytidine triphosphate deaminase. Members of this family include the Escherichia coli monofunctional deoxycytidine triphosphate deaminase (dCTP deaminase) and a Methanocaldococcus jannaschii bifunctional dCTP deaminase (3.5.4.13)/dUTP diphosphatase (EC 3.6.1.23), which has the EC number 3.5.4.30 for the overall operation.
Probab=99.93 E-value=3.2e-25 Score=164.05 Aligned_cols=87 Identities=30% Similarity=0.469 Sum_probs=81.0
Q ss_pred ccEEEcCCCEEEEEcCcEEEeCCCcEEEEEeCCCcccccceeec--ceEEcCCCccceEEEEEcCCCCcEEeeCCCEEEE
Q 032989 20 AETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVG--AGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQ 97 (129)
Q Consensus 20 ~~~~i~p~~~~li~Tg~~v~ip~g~~~~i~~RSsl~~k~gl~v~--~gvID~gY~Gei~i~l~N~~~~~~~i~~G~riaQ 97 (129)
++++|+||+.++++|++++.+|+++++++.+|||++ |.|+.+. .|+|||||+|++++.+.|.++.++.|++|+||||
T Consensus 69 ~~~~l~Pg~~~lv~t~e~i~lP~~~~~~i~~RSsla-r~Gl~v~~~~g~iD~Gy~G~i~l~l~N~~~~~i~i~~g~rIaQ 147 (179)
T TIGR02274 69 EEFVIPPGEFALATTLEYVKLPDDVVGFLEGRSSLA-RLGLFIHVTAGRIDPGFEGNITLELFNAGKLPVKLRPGMRIAQ 147 (179)
T ss_pred CcEEECCCCEEEEEeceEEEcCCCeEEEEEeccccc-cCCEEecCCCCcCCcCCCCEEEEEEEeCCCCCEEECCCCEEEE
Confidence 358999999999999999999999999999999999 6698764 5899999999999999999999999999999999
Q ss_pred EEEeeccccc
Q 032989 98 LIIEKIVTPD 107 (129)
Q Consensus 98 lv~~~~~~~~ 107 (129)
|+|+++..+.
T Consensus 148 lvf~~~~~~~ 157 (179)
T TIGR02274 148 LVFERLSSPA 157 (179)
T ss_pred EEEEECcccc
Confidence 9999998753
No 21
>PHA03131 dUTPase; Provisional
Probab=99.93 E-value=4.4e-25 Score=173.57 Aligned_cols=107 Identities=21% Similarity=0.264 Sum_probs=99.2
Q ss_pred cCCeEEEEEcCccEEEcCCCEEEEEcCcEEEeCCCcEEEEEeCCCcccccceeecceEEcCCCccceEEEEEcCCCCcEE
Q 032989 9 IICYHCILRSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFV 88 (129)
Q Consensus 9 ~~~aG~DL~~~~~~~i~p~~~~li~Tg~~v~ip~g~~~~i~~RSsl~~k~gl~v~~gvID~gY~Gei~i~l~N~~~~~~~ 88 (129)
...+++||+..++++|+|+++++|+||+++++|+||++++.+++ .|+ +.+..|+|||||||||++.++|.+++++.
T Consensus 23 ~~~~~l~l~n~~~i~I~Pge~~lV~TGi~i~iP~g~~~~i~gla---~K~-i~~~~GvIDsdYrGEI~V~l~N~~~~~~~ 98 (286)
T PHA03131 23 AEESRLTLVNKTPILVRPGEPTVVPLGLYIRRPPGFAFILWGST---SKN-VTCHTGLIDPGYRGELKLILLNKTKYNVT 98 (286)
T ss_pred cccCCeEEeCCCCEEECCCCEEEEeCCeEEEcCCCEEEEEeecc---cCc-EEccceeECCCCCcceEEEEEeCCCCCEE
Confidence 78899999999999999999999999999999999999998664 476 88899999999999999999999999999
Q ss_pred eeCCCEEEEEEEeecccccEEEeccCCCccC
Q 032989 89 VKVGDRIAQLIIEKIVTPDVLEVENLDSTVR 119 (129)
Q Consensus 89 i~~G~riaQlv~~~~~~~~~~~v~~l~~t~R 119 (129)
|++|||+|||+++++.+|.+.+++.+..-.|
T Consensus 99 I~~Gd~~~qlv~~~~~~p~~~~v~~l~~P~~ 129 (286)
T PHA03131 99 LRPGELKVSLLAFTYATPILTDDSLLNPPQY 129 (286)
T ss_pred ECCCCEEEEEEEEEeecCceEeccccCCCCc
Confidence 9999999999999999999999988865555
No 22
>PRK00416 dcd deoxycytidine triphosphate deaminase; Reviewed
Probab=99.92 E-value=1.6e-24 Score=160.11 Aligned_cols=85 Identities=22% Similarity=0.295 Sum_probs=80.6
Q ss_pred cEEEcCCCEEEEEcCcEEEeCCCcEEEEEeCCCcccccceeecceEEcCCCccceEEEEEcCCCCcEEeeCCCEEEEEEE
Q 032989 21 ETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLII 100 (129)
Q Consensus 21 ~~~i~p~~~~li~Tg~~v~ip~g~~~~i~~RSsl~~k~gl~v~~gvID~gY~Gei~i~l~N~~~~~~~i~~G~riaQlv~ 100 (129)
.++|+||+.++++|++++++|+++++++.+|||++ |.|+.+..++|||||+|++++.+.|.++.++.|++|+|||||+|
T Consensus 70 ~~~l~pg~~~lv~t~e~i~lP~~~~~~i~~RSsla-r~Gl~v~~~~iD~Gy~G~i~l~l~n~~~~~i~I~~g~rIaQlvf 148 (177)
T PRK00416 70 VFILPPGEFALARTLEYFKLPDDVVGILEGRSSLA-RLGLIVHVTAIDPGWEGHITLEFSNSGPLPVKLYPGEGIGQLLF 148 (177)
T ss_pred eEEECCCCEEEEEeeeEEECCCCeEEEEEeCchhh-cCCEEecCceECcCCcCEEEEEEEeCCCCCEEECCCCEEEEEEE
Confidence 37899999999999999999999999999999999 66999988999999999999999999999999999999999999
Q ss_pred eecccc
Q 032989 101 EKIVTP 106 (129)
Q Consensus 101 ~~~~~~ 106 (129)
+++..+
T Consensus 149 ~~~~~~ 154 (177)
T PRK00416 149 FELSEP 154 (177)
T ss_pred EECCCc
Confidence 998654
No 23
>COG0717 Dcd Deoxycytidine deaminase [Nucleotide transport and metabolism]
Probab=99.87 E-value=6.1e-22 Score=146.93 Aligned_cols=83 Identities=30% Similarity=0.368 Sum_probs=80.8
Q ss_pred EEEcCCCEEEEEcCcEEEeCCCcEEEEEeCCCcccccceeecceEEcCCCccceEEEEEcCCCCcEEeeCCCEEEEEEEe
Q 032989 22 TKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIE 101 (129)
Q Consensus 22 ~~i~p~~~~li~Tg~~v~ip~g~~~~i~~RSsl~~k~gl~v~~gvID~gY~Gei~i~l~N~~~~~~~i~~G~riaQlv~~ 101 (129)
++|+|++.+++.|.++++||+++++++.+|||++ |.|+.++.|+|||||+|.+++.+.|.++.|+.|++|+|||||+|.
T Consensus 75 ~il~P~~~~L~~t~E~i~iP~~v~~~~~gRSSla-R~G~~~~~~~~DpGf~G~itle~~n~~~~p~~L~~g~rI~QLvF~ 153 (183)
T COG0717 75 FILPPGEFYLAVTLEYVEIPEDVAAFCTGRSSLA-RLGLIVHVGVIDPGFEGRITLELVNSGPLPIRLYPGERIAQLVFL 153 (183)
T ss_pred EEECCCcEEEEEEEEEEEcCcceEEEEEccCchh-hCcEEecCccCCCCcCceEEEEEEecCCCCeEEcCCCEEEEEEEE
Confidence 8999999999999999999999999999999998 789999999999999999999999999999999999999999999
Q ss_pred eccc
Q 032989 102 KIVT 105 (129)
Q Consensus 102 ~~~~ 105 (129)
++..
T Consensus 154 ~l~~ 157 (183)
T COG0717 154 ELDS 157 (183)
T ss_pred Eccc
Confidence 9984
No 24
>PRK02253 deoxyuridine 5'-triphosphate nucleotidohydrolase; Provisional
Probab=99.87 E-value=9.6e-22 Score=144.14 Aligned_cols=84 Identities=25% Similarity=0.304 Sum_probs=71.8
Q ss_pred cEEEcCCCEEEEEcCcEEEeCCCcEEEEEeCCCcccccceeecceEEcCCCccceEEEEEcCCCCcEEeeCCCEEEEEEE
Q 032989 21 ETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLII 100 (129)
Q Consensus 21 ~~~i~p~~~~li~Tg~~v~ip~g~~~~i~~RSsl~~k~gl~v~~gvID~gY~Gei~i~l~N~~~~~~~i~~G~riaQlv~ 100 (129)
.++|+|++.. +.|.+++++|+++++++.+|||++ |.|+.+.+++|||||+|...+.+.|.+..++.|++|+|||||+|
T Consensus 71 ~~~l~pg~~l-~~t~E~v~ip~~~~~~~~~RSsl~-R~Gl~v~~~~iD~Gy~G~~~i~l~~~n~~~~~i~~G~rIaQlvf 148 (167)
T PRK02253 71 WIRLEPGIYK-VRYNEVVNIPEDHVGFAYPRSSLL-RNGCTLETAVWDAGYEGRGEGLLVVHNPHGIRLERGARIAQLVF 148 (167)
T ss_pred eEEECCCCEE-EEeeeEEECCCCcEEEEECCcHHh-hCCeEcCCccCCcCCCCCCEEEEEEeCCCCEEECCCCEEEEEEE
Confidence 3789999875 568899999999999999999996 77998888999999998554444444468999999999999999
Q ss_pred eecccc
Q 032989 101 EKIVTP 106 (129)
Q Consensus 101 ~~~~~~ 106 (129)
.++..+
T Consensus 149 ~~~~~~ 154 (167)
T PRK02253 149 ATLDHE 154 (167)
T ss_pred EECccC
Confidence 998765
No 25
>PHA03129 dUTPase; Provisional
Probab=99.83 E-value=1.3e-20 Score=153.29 Aligned_cols=77 Identities=25% Similarity=0.464 Sum_probs=73.2
Q ss_pred EEEEEcCcEEEeCCCcEEEEE------eCCCcccccceeecceEEcCCCccceEEEEEcCCCCcEEeeCCCEEEEEEEee
Q 032989 29 KALVPTDLSIAIPEGTYARIA------PRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEK 102 (129)
Q Consensus 29 ~~li~Tg~~v~ip~g~~~~i~------~RSsl~~k~gl~v~~gvID~gY~Gei~i~l~N~~~~~~~i~~G~riaQlv~~~ 102 (129)
..+|+||+++++|+||++++. +||+ +.| |+.+..|+||+||||||+++|+|. ++++|++|+|||||++.|
T Consensus 77 ~~lV~TGlaiaiP~Gy~~~V~~~~~~~PRSG-a~k-gI~v~NGvIDSdYRGEIkviL~N~--~~~tI~~GdRIAQLVi~~ 152 (436)
T PHA03129 77 ICLLDLGVRVAVPQNYVVVLAKLTDPDPTSR-GIP-VIRVANGVIDSGYRGTIRAVLFYE--KSCTIPKNGLAIRLALVK 152 (436)
T ss_pred EEEECCceEEecCCCEEEEEEecCCCCCCcc-CcC-ceEeccccccCCCCcEEEEEEEcC--CCEEeCCCCEEEEEEEEE
Confidence 679999999999999999999 9999 988 998877999999999999999998 899999999999999999
Q ss_pred cccccEE
Q 032989 103 IVTPDVL 109 (129)
Q Consensus 103 ~~~~~~~ 109 (129)
+.+++|+
T Consensus 153 v~~~~~~ 159 (436)
T PHA03129 153 LASPNIN 159 (436)
T ss_pred eeeccee
Confidence 9988865
No 26
>PRK07559 2'-deoxycytidine 5'-triphosphate deaminase; Provisional
Probab=99.73 E-value=1.5e-17 Score=134.56 Aligned_cols=82 Identities=21% Similarity=0.282 Sum_probs=75.7
Q ss_pred ccEEEcCCCEEEEEcCcEEEeCCCcEEEEEeCCCcccccceeec--------ceEEcCCCccceEEEEEcCCCCcEEeeC
Q 032989 20 AETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVG--------AGVIDADYRGPVGVILFNHSDVDFVVKV 91 (129)
Q Consensus 20 ~~~~i~p~~~~li~Tg~~v~ip~g~~~~i~~RSsl~~k~gl~v~--------~gvID~gY~Gei~i~l~N~~~~~~~i~~ 91 (129)
+.++|+||+.++++|.|++++|+++++++.+|||++ |.|+.+. .++|||||+|.+++++.| +..|+.+++
T Consensus 80 eg~vL~Pg~~yL~~t~E~v~LP~dl~a~~~~RSSlg-RlGl~i~~~a~~~~~~~~iDpGy~G~itLEi~~-~~~pI~l~p 157 (365)
T PRK07559 80 DGAVLETGCVYIVPLLESLALPADLSASANPKSSTG-RLDVFTRVITDGAQEFDKIPAGYHGPLYAEISP-RTFPILVRT 157 (365)
T ss_pred CceEEcCCeEEEEEEEEEEeCCcceEEEEeccchhh-hCCeEEEEecccccccCccCCCccceEEEEEec-CCccEEEeC
Confidence 457999999999999999999999999999999998 7898642 489999999999999998 789999999
Q ss_pred CCEEEEEEEeec
Q 032989 92 GDRIAQLIIEKI 103 (129)
Q Consensus 92 G~riaQlv~~~~ 103 (129)
|+||||++|.+-
T Consensus 158 G~RI~QlvF~~~ 169 (365)
T PRK07559 158 GSRLSQIRFRRG 169 (365)
T ss_pred CCEEEEEEEEcC
Confidence 999999999985
No 27
>PHA03127 dUTPase; Provisional
Probab=99.60 E-value=3.6e-15 Score=118.57 Aligned_cols=75 Identities=21% Similarity=0.295 Sum_probs=68.2
Q ss_pred EEEEEcCcEEEeCCCcEEEEEe-CCCcccccceeecceEEcCCCccceEEEEEcCCCCcEEeeCCCEEEEEEEeecc
Q 032989 29 KALVPTDLSIAIPEGTYARIAP-RSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIV 104 (129)
Q Consensus 29 ~~li~Tg~~v~ip~g~~~~i~~-RSsl~~k~gl~v~~gvID~gY~Gei~i~l~N~~~~~~~i~~G~riaQlv~~~~~ 104 (129)
+.+|+||+++.+|+||++++.+ ||+++.|+|+.+..|+||+||||||+++++|.+. ...|.+|+-=.++.+.+..
T Consensus 63 ~~lV~tGl~i~~P~Gy~~~v~p~RSGla~k~gi~~~nG~IDsgYRGei~vil~N~~~-~~~~~pg~l~l~l~l~~~~ 138 (322)
T PHA03127 63 SRLVNLGLRAAAPGGYAILMSQMCSGQTPSRPPAVAVGIVDSGYRGILRAIVWAPPC-IETIPEAGLALRLTLARLA 138 (322)
T ss_pred EEEecCceEEecCCCEEEEEeeccCCccccCCcccccCCCCCCCCceEEEEEEeCCC-CeeecCCceEEEEEEeeee
Confidence 4689999999999999999999 9999999999998899999999999999999988 9999999766677666654
No 28
>PRK07559 2'-deoxycytidine 5'-triphosphate deaminase; Provisional
Probab=99.53 E-value=5e-14 Score=114.20 Aligned_cols=83 Identities=16% Similarity=0.269 Sum_probs=74.2
Q ss_pred ccEEEcCCCEEEEEcCcEEEeCCCcEEEEEeCCCcccccce-ee-cceEEcCCCc--------cceEEEEEcCCCCcEEe
Q 032989 20 AETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSM-DV-GAGVIDADYR--------GPVGVILFNHSDVDFVV 89 (129)
Q Consensus 20 ~~~~i~p~~~~li~Tg~~v~ip~g~~~~i~~RSsl~~k~gl-~v-~~gvID~gY~--------Gei~i~l~N~~~~~~~i 89 (129)
+.++|.|++.+++.|.+++.+|+++++++.+||| +.|. .+ .+|+|||||. |.+++++.| ++.|+.|
T Consensus 246 ~~~iL~Pgef~L~~t~E~v~lP~d~~a~~~~~~s---~~G~~~vh~Ag~~DpGf~~~~~~~~~g~~tLEi~~-~~~P~~L 321 (365)
T PRK07559 246 GELILDPGEFYILASREAVHVPPDYAAEMVPFDP---LVGEFRVHYAGFFDPGFGHAEAGGTGSRAVLEVRS-HEVPFIL 321 (365)
T ss_pred CcEEECCCCEEEEEEEEEEeCChhHeEEEeccCc---ceeeeeccccceECCCCCcccccCCCceEEEEEEe-CCCcEEe
Confidence 4699999999999999999999999999997777 2244 25 6899999999 999999998 7899999
Q ss_pred eCCCEEEEEEEeecccc
Q 032989 90 KVGDRIAQLIIEKIVTP 106 (129)
Q Consensus 90 ~~G~riaQlv~~~~~~~ 106 (129)
++|+|||||+|.++..+
T Consensus 322 ~~G~ri~qlvf~~~~~~ 338 (365)
T PRK07559 322 EHGQIVGRLVYERMLER 338 (365)
T ss_pred cCCCEEEEEEEEEcCCC
Confidence 99999999999999754
No 29
>PHA03128 dUTPase; Provisional
Probab=99.46 E-value=3.8e-13 Score=107.68 Aligned_cols=89 Identities=15% Similarity=0.139 Sum_probs=78.1
Q ss_pred CeEEEEEcCccEEEcCCCEEEEEcCcEEEeCCCcEEEEEeCCCcccccceeecceEEcCCCccce-EEEEEcCCCCcEEe
Q 032989 11 CYHCILRSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPV-GVILFNHSDVDFVV 89 (129)
Q Consensus 11 ~aG~DL~~~~~~~i~p~~~~li~Tg~~v~ip~g~~~~i~~RSsl~~k~gl~v~~gvID~gY~Gei-~i~l~N~~~~~~~i 89 (129)
+|||||++++++.|+|+.+..+.....-..++.+.+++++||+++.| ||.+.+.+|-++ .+ .|.++|.+++.+.|
T Consensus 209 ~agFDL~l~~~l~I~P~~t~tv~fda~p~~~p~~~aLI~GrsgLA~k-GLlV~PtiW~~~---tlp~lki~N~T~~Tv~i 284 (376)
T PHA03128 209 HYFFGLRTRQTIIIQPGHTQTVYFDAAYVHAPGICALIVGTRQFSQS-DLIIRPTIWLPG---TVATVTVVNTSSTTVCI 284 (376)
T ss_pred ccceEEecCCcEEECCCCcEEEEEeccCCCCCcceeEEEcCchhhhC-CcEEeeeEeCCC---CcceEEEEeCCCceEEe
Confidence 48999999999999999999888874444578999999999999976 999877776554 47 89999999999999
Q ss_pred eCCCEEEEEEEeec
Q 032989 90 KVGDRIAQLIIEKI 103 (129)
Q Consensus 90 ~~G~riaQlv~~~~ 103 (129)
++|+||||+||..-
T Consensus 285 ~agsrIAQVVFth~ 298 (376)
T PHA03128 285 SPTTTVAKVVFTTR 298 (376)
T ss_pred cCCCEEEEEEEeeC
Confidence 99999999999874
No 30
>PF06559 DCD: 2'-deoxycytidine 5'-triphosphate deaminase (DCD); InterPro: IPR010550 This family consists of several bacterial 2'-deoxycytidine 5'-triphosphate deaminase proteins (3.5.4.13 from EC).; GO: 0008829 dCTP deaminase activity; PDB: 2R9Q_C.
Probab=99.34 E-value=6.2e-12 Score=100.40 Aligned_cols=83 Identities=22% Similarity=0.290 Sum_probs=64.2
Q ss_pred ccEEEcCCCEEEEEcCcEEEeCCCcEEEEEeCCCcccccceeecc--------eEEcCCCccceEEEEEcCCCCcEEeeC
Q 032989 20 AETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGA--------GVIDADYRGPVGVILFNHSDVDFVVKV 91 (129)
Q Consensus 20 ~~~~i~p~~~~li~Tg~~v~ip~g~~~~i~~RSsl~~k~gl~v~~--------gvID~gY~Gei~i~l~N~~~~~~~i~~ 91 (129)
+..+|+||+.++++|-+++.+|.+..+...+|||++ |.++.+.. ..||+||.|.|.++|.| ..-++.+.+
T Consensus 79 ~GaVLE~GcVYlvpl~EsL~LP~di~A~anpKSStG-RLdlftRvitd~~~~Fd~I~~Gy~GpLylEIsp-rtfpI~vrp 156 (364)
T PF06559_consen 79 DGAVLEPGCVYLVPLMESLALPADISARANPKSSTG-RLDLFTRVITDGGAEFDRIPPGYSGPLYLEISP-RTFPILVRP 156 (364)
T ss_dssp S-EEE-TT-EEEEEEEEEEE--TTEEEEEEE-HHHH-HTTEEEEEEETT-SSTTEE-TT-EEEEEEEEEE-SSS-EEE-T
T ss_pred CCceecCCeEEEEEeEeeecCCcCcEEEEcCccccc-ccceEEEEeccCccccCccCCCCcccEEEEEcC-CeeeEEEcC
Confidence 446999999999999999999999999999999998 77886532 35999999999999999 589999999
Q ss_pred CCEEEEEEEeecc
Q 032989 92 GDRIAQLIIEKIV 104 (129)
Q Consensus 92 G~riaQlv~~~~~ 104 (129)
|+|+.|+.|.+-.
T Consensus 157 G~rL~QirFr~g~ 169 (364)
T PF06559_consen 157 GMRLSQIRFRRGQ 169 (364)
T ss_dssp T-EEEEEEEEES-
T ss_pred CCceeeEEEecCC
Confidence 9999999999853
No 31
>PHA03128 dUTPase; Provisional
Probab=99.32 E-value=3.8e-11 Score=96.29 Aligned_cols=107 Identities=10% Similarity=0.042 Sum_probs=96.0
Q ss_pred EeccCCeEEEEEcCccEEEcCCCEEEEEcCcEEEeCCCcEEEEEeCCCcccccceeecceEEcCCCccceEEEEEcCCCC
Q 032989 6 FFTIICYHCILRSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDV 85 (129)
Q Consensus 6 ~~t~~~aG~DL~~~~~~~i~p~~~~li~Tg~~v~ip~g~~~~i~~RSsl~~k~gl~v~~gvID~gY~Gei~i~l~N~~~~ 85 (129)
-.......+-|+.-+.+.+.|++...+++|+++.+|+||+|+++.+++- + .+.+.+|+|||||+| +++.+.|.+..
T Consensus 99 i~~q~~srL~LtNk~iI~V~p~~~~Iv~LGI~L~iPeG~fgi~L~~~s~--~-~v~ChtgLIdpGy~g-ikLiL~N~Ts~ 174 (376)
T PHA03128 99 IVKQCHTQLAFYNKHIIWLSRERKTPTSLGISLYIPEGFFGITFYKCLD--A-QFVCMPELIEPGLQN-PQMDVVNLNYT 174 (376)
T ss_pred EeccCcceEEEEcceeEEEeCCCceEEcceeEEecCCCeEEEEEecCCC--C-CeEecccccCCCCcc-eEEEEEeCCCc
Confidence 3355667888888889999999999999999999999999999998885 4 688899999999999 99999999999
Q ss_pred cEEeeCCCEEEEEEEeecccccEEEeccCCC
Q 032989 86 DFVVKVGDRIAQLIIEKIVTPDVLEVENLDS 116 (129)
Q Consensus 86 ~~~i~~G~riaQlv~~~~~~~~~~~v~~l~~ 116 (129)
++.|.+|+-=.-+.++++..|+.-++..|..
T Consensus 175 ~v~L~PGeLevsI~aFpy~vPePwq~~nL~P 205 (376)
T PHA03128 175 FQAIFPGTIEGDIGVFPCFCPEPWQLMNIPP 205 (376)
T ss_pred cceecCCceEEEEEEEEccCCCccccccCCC
Confidence 9999999999999999999998767666653
No 32
>PHA03125 dUTPase; Provisional
Probab=99.30 E-value=2.1e-11 Score=97.45 Aligned_cols=88 Identities=15% Similarity=0.157 Sum_probs=76.0
Q ss_pred eEEEEEcCccEEEcCCCEEEEEcCcEEEeCCCcEEEEEeCCCcccccceeecceEEcCCCccce-EEEEEcCCCCcEEee
Q 032989 12 YHCILRSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPV-GVILFNHSDVDFVVK 90 (129)
Q Consensus 12 aG~DL~~~~~~~i~p~~~~li~Tg~~v~ip~g~~~~i~~RSsl~~k~gl~v~~gvID~gY~Gei-~i~l~N~~~~~~~i~ 90 (129)
..|||++++++.|+|+.+...........|+...+++++||+++.| ||.+.+.+|-++ .+ .|.++|.+++.+.++
T Consensus 254 ~~FDL~l~r~l~I~P~~~~~~~f~~a~~CPp~~~aLI~GrsgLA~k-GLlV~PtiW~~~---tlp~lki~N~T~~Tv~i~ 329 (376)
T PHA03125 254 AKFHLKTNREFIVKPNSYTIQNFDAMYVCADELKALMIPSKEILKL-GLLIETYIWNKD---TIPSIKIFNSTRKTIYIP 329 (376)
T ss_pred cceeEeeCccEEECCCccceeeeEEEeeCCCcceeEEEcCchhhhC-CcEEeeeEeCCC---CcceEEEEecCCceEEec
Confidence 3499999999999999766666656667888889999999999976 999877776654 47 899999999999999
Q ss_pred CCCEEEEEEEeec
Q 032989 91 VGDRIAQLIIEKI 103 (129)
Q Consensus 91 ~G~riaQlv~~~~ 103 (129)
+|+||||+||..-
T Consensus 330 AgsrIAQVVFth~ 342 (376)
T PHA03125 330 TGICIARIIFTCG 342 (376)
T ss_pred CCCEEEEEEEEeC
Confidence 9999999999874
No 33
>PHA03125 dUTPase; Provisional
Probab=99.20 E-value=3.8e-10 Score=90.36 Aligned_cols=106 Identities=21% Similarity=0.243 Sum_probs=93.6
Q ss_pred EEeccCCeEEEEEcCccEEEcCCCEEEEEcCcEEEeCCCcEEEEEeCCCcccccceeecceEEcCCCccceEEEEEcCCC
Q 032989 5 FFFTIICYHCILRSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSD 84 (129)
Q Consensus 5 ~~~t~~~aG~DL~~~~~~~i~p~~~~li~Tg~~v~ip~g~~~~i~~RSsl~~k~gl~v~~gvID~gY~Gei~i~l~N~~~ 84 (129)
|-++...+++-|..-..+.+.|++...+++|+++.+|+||++.++++++ . -...+.+|+|||| |++++.+.|.++
T Consensus 144 F~V~s~~srL~LtNk~iI~V~p~r~~IvpLGI~L~iPeG~fgIL~gkss-~--v~cvchtgLIdpG--geikLiL~N~Ts 218 (376)
T PHA03125 144 MDVFMDTNKITLVNRELIWVPHDQVRIVKLDISLNIPDGFFGVITGHSN-D--VFCECVTEIITDE--TDISVFLMNLSE 218 (376)
T ss_pred EEEEcCCceEEEEcceeEEEeCCCceEEeceEEEecCCCeEEEEECCCC-C--CceeecceeECCC--CcEEEEEEeCCC
Confidence 4456557788888888999999999999999999999999999999999 3 2455689999999 999999999999
Q ss_pred CcEEeeCCCEEEEEEEeecccccEEEeccCC
Q 032989 85 VDFVVKVGDRIAQLIIEKIVTPDVLEVENLD 115 (129)
Q Consensus 85 ~~~~i~~G~riaQlv~~~~~~~~~~~v~~l~ 115 (129)
.++.|.||+-=.-+.++++..|+.-++..+.
T Consensus 219 ~~v~L~PGeLeVsI~aFpy~vPEPwq~~nL~ 249 (376)
T PHA03125 219 HSLMLLPGDVEFSINFLPCYIPEPWEMINLS 249 (376)
T ss_pred CcceecCCceEEEEEEEEccCCCcccccCCC
Confidence 9999999999999999999999866666654
No 34
>PHA03126 dUTPase; Provisional
Probab=99.01 E-value=3.2e-09 Score=84.48 Aligned_cols=82 Identities=22% Similarity=0.332 Sum_probs=69.9
Q ss_pred EEEEEcCcEEEeCCCcEEEEEeCCCc--------ccccce---------eecceEEcCCCccceEEEEEcCCCCcEEeeC
Q 032989 29 KALVPTDLSIAIPEGTYARIAPRSGL--------AWKHSM---------DVGAGVIDADYRGPVGVILFNHSDVDFVVKV 91 (129)
Q Consensus 29 ~~li~Tg~~v~ip~g~~~~i~~RSsl--------~~k~gl---------~v~~gvID~gY~Gei~i~l~N~~~~~~~i~~ 91 (129)
+.++++|+++.-|+||+.++.+-+++ ..| .+ .++.|+|||||||+|+++ .|..+...+|.+
T Consensus 53 ~~~~~lGv~~~~~~gyA~~L~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~GlID~GYrG~lk~i-~~~~~~~~~i~~ 130 (326)
T PHA03126 53 SVLTDVGVRVACSSGYAIVLTQISGLLPVEPEPGNFS-NVTFPGNSAKYYTAYGIVDSGYRGVVKAV-QFAPGVNTSVPP 130 (326)
T ss_pred EEEecceeEEeCCCCeEEEEEeccCCCcccccccccc-ccccccccccceeeeceECCCcceEEEeE-eccCCCceeecC
Confidence 46899999999999999999998864 013 23 557999999999999999 788888999999
Q ss_pred CCEEEEEEEeecccccEEEec
Q 032989 92 GDRIAQLIIEKIVTPDVLEVE 112 (129)
Q Consensus 92 G~riaQlv~~~~~~~~~~~v~ 112 (129)
|+--.+|+.+++.++.....+
T Consensus 131 g~L~v~L~~~~~~t~~~~~~~ 151 (326)
T PHA03126 131 GQMSLGLVLVKLATETIHVTS 151 (326)
T ss_pred CceEEEEEEEEeecceeeccC
Confidence 999999999999998876443
No 35
>PHA03123 dUTPase; Provisional
Probab=98.09 E-value=2.6e-05 Score=63.73 Aligned_cols=77 Identities=21% Similarity=0.255 Sum_probs=59.2
Q ss_pred EEEEEcCcEEEeCCCcEEEEEeCCCcc-cccc-eeecceEEcCCCccceEEEEEcCCCCcEE-eeCCCEEEEEEEeeccc
Q 032989 29 KALVPTDLSIAIPEGTYARIAPRSGLA-WKHS-MDVGAGVIDADYRGPVGVILFNHSDVDFV-VKVGDRIAQLIIEKIVT 105 (129)
Q Consensus 29 ~~li~Tg~~v~ip~g~~~~i~~RSsl~-~k~g-l~v~~gvID~gY~Gei~i~l~N~~~~~~~-i~~G~riaQlv~~~~~~ 105 (129)
..++.+|+++..|.+|+.++.--++-. -..+ +.+..|+||+||||.|+..++- +..++ |.||.--.+|.+.++.+
T Consensus 85 ~~~ldlgvr~A~p~~Yavll~q~~~~~~~~~~~~~iAnGviDsGYRG~i~avl~~--~~~~t~ipp~~l~i~L~lvkL~~ 162 (402)
T PHA03123 85 IQQLDLGVKAAPPNEYALLLIQCIDSALADEDDFFIANGVIDAGYRGRICALLYY--KKGVTIILPGDLMIYLFPVKLAQ 162 (402)
T ss_pred EEEeccceeeecCCCeEEEEEeecCCCCCCCcceEEEeeeeccCccceEEEEEEe--cCcceeeCCCceEEEEEeeeeec
Confidence 568889999999999997766533322 1223 4557999999999999999885 34444 99999999999999875
Q ss_pred cc
Q 032989 106 PD 107 (129)
Q Consensus 106 ~~ 107 (129)
..
T Consensus 163 ~~ 164 (402)
T PHA03123 163 SR 164 (402)
T ss_pred ce
Confidence 54
No 36
>PHA03130 dUTPase; Provisional
Probab=97.85 E-value=0.0001 Score=59.55 Aligned_cols=90 Identities=24% Similarity=0.364 Sum_probs=67.6
Q ss_pred EEEEcCccEEEcCCC-------EEEEEcCcEEEeCCCcEEEEE-eCCCcccccceeecceEEcCCCccceEEEEEcCCCC
Q 032989 14 CILRSAAETKVPARG-------KALVPTDLSIAIPEGTYARIA-PRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDV 85 (129)
Q Consensus 14 ~DL~~~~~~~i~p~~-------~~li~Tg~~v~ip~g~~~~i~-~RSsl~~k~gl~v~~gvID~gY~Gei~i~l~N~~~~ 85 (129)
+-|.....+.+.|+. ..+++.++++.+|.||++.+. +-+|-+ +-.+..|+||+||||.++..++- ...
T Consensus 37 l~~~n~~~v~~~~~~~~~~~~~~~~v~~~lr~a~p~~~~~~~~~~~~~~~---~~~~~~g~idsgyrg~~~av~~a-p~~ 112 (368)
T PHA03130 37 LSLANRREVAFTPAGGGASGWAVGRVPLDLRVAMPTDFCAVVHAPPTAGA---PYRVALGLIDSGYRGTVQAVVLA-PGE 112 (368)
T ss_pred EEeecccccccccCCCCCcceEEEEecCceEEecCCCeEEEEeccccCCC---CceeEEEEeccCccceEEEEEEc-CCc
Confidence 444444556666642 568999999999999999999 444422 22346899999999999987665 366
Q ss_pred cEEeeCCCEEEEEEEeeccccc
Q 032989 86 DFVVKVGDRIAQLIIEKIVTPD 107 (129)
Q Consensus 86 ~~~i~~G~riaQlv~~~~~~~~ 107 (129)
.-.+.+|+--.||.|.++....
T Consensus 113 ~~~~~pg~l~~~l~~~~~~~~~ 134 (368)
T PHA03130 113 TRRFAPGELRVDLTFLRVSGSP 134 (368)
T ss_pred ccccCCCceEeeeEEEEeecCC
Confidence 7789999999999999986544
No 37
>PF04797 Herpes_ORF11: Herpesvirus dUTPase protein; InterPro: IPR006882 This family of proteins are found in Herpesvirus. This family includes proteins called ORF10 and ORF11 amongst others.
Probab=97.54 E-value=0.0012 Score=54.12 Aligned_cols=85 Identities=13% Similarity=0.096 Sum_probs=64.9
Q ss_pred EEEEEcCccEEEcCCCEEEEEcCcEEEeCC-CcEE--EEEeCCCcccccceeecceEEcCCCccceEEEEEcCCCCcEEe
Q 032989 13 HCILRSAAETKVPARGKALVPTDLSIAIPE-GTYA--RIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFVV 89 (129)
Q Consensus 13 G~DL~~~~~~~i~p~~~~li~Tg~~v~ip~-g~~~--~i~~RSsl~~k~gl~v~~gvID~gY~Gei~i~l~N~~~~~~~i 89 (129)
-.=+|...+++|+|+++..|.-+-....+. +..+ .+.+-+.. ....+.+.++-|+ ..+.|.++|.++.+++|
T Consensus 264 v~~iY~~~~~~IpP~es~~v~~~~~y~~~~~~~~~~~~I~~~~~~---~~~~i~p~~W~P~--~~~~ltv~N~s~~p~~I 338 (379)
T PF04797_consen 264 VPPIYPGPEKTIPPGESTKVKYNNMYEQGNPSKITAFFICGLNDN---SDFVISPCEWLPG--SPLQLTVHNPSNFPITI 338 (379)
T ss_pred eeeEeCCCceEECCCCEEEEEEccEEEecCCCccceEEEEcCCCC---ceEEEeeeEECCC--CceEEEEEcCCCceEEe
Confidence 455777789999999999999887776543 2222 34443332 2456678888777 67899999999999999
Q ss_pred eCCCEEEEEEEee
Q 032989 90 KVGDRIAQLIIEK 102 (129)
Q Consensus 90 ~~G~riaQlv~~~ 102 (129)
++|+++||.+|..
T Consensus 339 ~~gt~la~Aif~~ 351 (379)
T PF04797_consen 339 SRGTPLAQAIFIY 351 (379)
T ss_pred cCCCEEEEEEEEe
Confidence 9999999999985
No 38
>PF06559 DCD: 2'-deoxycytidine 5'-triphosphate deaminase (DCD); InterPro: IPR010550 This family consists of several bacterial 2'-deoxycytidine 5'-triphosphate deaminase proteins (3.5.4.13 from EC).; GO: 0008829 dCTP deaminase activity; PDB: 2R9Q_C.
Probab=97.49 E-value=0.0011 Score=53.61 Aligned_cols=84 Identities=19% Similarity=0.324 Sum_probs=55.7
Q ss_pred cEEEcCCCEEEEEcCcEEEeCCCcEEEEEeCCCcccccceee-cceEEcCCCc-------c-ceEEEEEcCCCCcEEeeC
Q 032989 21 ETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV-GAGVIDADYR-------G-PVGVILFNHSDVDFVVKV 91 (129)
Q Consensus 21 ~~~i~p~~~~li~Tg~~v~ip~g~~~~i~~RSsl~~k~gl~v-~~gvID~gY~-------G-ei~i~l~N~~~~~~~i~~ 91 (129)
.++|.|++.++.-+.+.+.+|++|++.+.+--.+. - -..+ ..|..||||- | .-.+++.. -+.|+.|+.
T Consensus 247 ~liLdP~eFYil~Sre~v~iPp~~aAEM~p~~~~v-G-EfRvHYAGFFDPGFG~~~agg~Gsr~VLEVR~-hevPF~leh 323 (364)
T PF06559_consen 247 ELILDPGEFYILASREAVHIPPDYAAEMVPFDPLV-G-EFRVHYAGFFDPGFGHAEAGGAGSRAVLEVRS-HEVPFILEH 323 (364)
T ss_dssp EEEE-TT--EEEEEEEEE-B-TTEEEEEEE-GGGT-T-TEEEES--EE-TTTT-S-TTSS-EEEEEEEEE-SSS-EEEET
T ss_pred eEEECCcceEEEeecccccCChhHhhhcccccccc-C-ceEEeeccccCCCCCcccccCCCceEEEEEec-CCCCeeeeC
Confidence 48999999999999999999999999999866553 1 1333 6999999983 2 13356655 388999999
Q ss_pred CCEEEEEEEeeccccc
Q 032989 92 GDRIAQLIIEKIVTPD 107 (129)
Q Consensus 92 G~riaQlv~~~~~~~~ 107 (129)
|+.|++|+..++....
T Consensus 324 GQ~vgrLvyE~m~~~P 339 (364)
T PF06559_consen 324 GQIVGRLVYERMAERP 339 (364)
T ss_dssp T-EEEEEEEEEBSS--
T ss_pred CcEEEEEEehhhccCc
Confidence 9999999999987554
No 39
>PF05784 Herpes_UL82_83: Betaherpesvirus UL82/83 protein N terminus; InterPro: IPR008649 This family represents the N-terminal region of the UL82 and UL83 proteins from Betaherpesvirus sp., such as Human cytomegalovirus (HHV-5) (Human herpesvirus 5). As viruses are reliant upon their host cell to serve as proper environments for their replication, many have evolved mechanisms to alter intracellular conditions to suit their own needs. HHV-5 induces quiescent cells to enter the cell cycle and then arrests them in late G(1), before they enter the S phase, a cell cycle compartment that is presumably favourable for viral replication. The protein product of the HHV-5 UL82 gene, pp71, can accelerate the movement of cells through the G(1) phase of the cell cycle. This activity would help infected cells reach the late G(1) arrest point sooner and thus may stimulate the infectious cycle. pp71 also induces DNA synthesis in quiescent cells, but a pp71 mutant protein that is unable to induce quiescent cells to enter the cell cycle still retains the ability to accelerate the G(1) phase. Thus, the mechanism through which pp71 accelerates G(1) cell cycle progression appears to be distinct from the one that it employs to induce quiescent cells to exit G(0) and subsequently enter the S phase [].; GO: 0009405 pathogenesis; PDB: 3BW9_C.
Probab=97.04 E-value=0.00015 Score=59.01 Aligned_cols=89 Identities=8% Similarity=0.058 Sum_probs=0.0
Q ss_pred ccCCeEEEEEcCccEEEcCCCEEEEEcCcEEEeCCCcEEEEEeCCCcccccceeecceEEcCCCccceEEEEEcCCCCcE
Q 032989 8 TIICYHCILRSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDF 87 (129)
Q Consensus 8 t~~~aG~DL~~~~~~~i~p~~~~li~Tg~~v~ip~g~~~~i~~RSsl~~k~gl~v~~gvID~gY~Gei~i~l~N~~~~~~ 87 (129)
...+.||-+.+++++.++||++..+.....++-...|.|+++|+.- . |+.+..|.+.+. -.|.+.+.|.++ ++
T Consensus 255 ~h~~NGf~V~~Pr~i~l~pg~~~~v~id~~feS~~~~~~lF~Pk~i---p-Glsis~~~w~~~--~~l~i~i~a~~~-~v 327 (348)
T PF05784_consen 255 PHPRNGFTVLCPRNIHLKPGKTSHVTIDNAFESDQTYIGLFFPKDI---P-GLSISCGPWMER--QPLFIEIRATGK-NV 327 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCCEEEECCcceecCCCCeEEEEEeeeEecCCceEEEEecccC---C-CceeeeeccCCC--ceEEEEEEeccc-ce
Confidence 3678999999999999999999998888888888889999999876 3 888888887665 468999999866 99
Q ss_pred EeeCCCEEEEEEEeec
Q 032989 88 VVKVGDRIAQLIIEKI 103 (129)
Q Consensus 88 ~i~~G~riaQlv~~~~ 103 (129)
.|++++.++.+-|++-
T Consensus 328 ~i~~~q~LG~lhFf~r 343 (348)
T PF05784_consen 328 EIRYGQPLGSLHFFPR 343 (348)
T ss_dssp ----------------
T ss_pred eecccceeeeEEEeec
Confidence 9999999999999875
No 40
>PHA03365 hypothetical protein; Provisional
Probab=95.19 E-value=0.38 Score=40.09 Aligned_cols=81 Identities=11% Similarity=0.099 Sum_probs=57.1
Q ss_pred ccEEEcCCCEEEEEcCcEE--EeCCCcEEEEEeCCCcccccceeecceEEcCCCccceEEEEEcCCCCcEEeeCCCEEEE
Q 032989 20 AETKVPARGKALVPTDLSI--AIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQ 97 (129)
Q Consensus 20 ~~~~i~p~~~~li~Tg~~v--~ip~g~~~~i~~RSsl~~k~gl~v~~gvID~gY~Gei~i~l~N~~~~~~~i~~G~riaQ 97 (129)
-.+.|+|++.+.|.-+-.. .++...-|.|..-.+. + ...+...-|-|+ ....|.+.|.+..+++|..|+.+||
T Consensus 292 p~V~IP~~~~t~V~YnN~Y~~~~~~~iTAiI~n~~~~--~-~f~i~~ceW~p~--~ta~I~V~N~S~fp~~i~~Gt~lg~ 366 (419)
T PHA03365 292 PPVIIPPNCSTVVEYNNTYYSPLSLKITAIIVNHETN--P-DFYIYDCEWKPG--QTAKLMVTNTSNFPITISTGTHLGQ 366 (419)
T ss_pred CcEEeCCCceEEEEeCCEEEeccCCceEEEEEcCCCC--C-cEEEEeeecCCC--CeeEEEEEecCCCcEEeeCCCEeeE
Confidence 4688999998888766444 4556677888754442 2 333333333333 3577888999999999999999999
Q ss_pred EEEeeccc
Q 032989 98 LIIEKIVT 105 (129)
Q Consensus 98 lv~~~~~~ 105 (129)
.+|+--..
T Consensus 367 A~Fi~A~k 374 (419)
T PHA03365 367 AIFILAPK 374 (419)
T ss_pred EEEEEccc
Confidence 99976543
No 41
>PHA03124 dUTPase; Provisional
Probab=86.20 E-value=4.1 Score=33.89 Aligned_cols=83 Identities=23% Similarity=0.336 Sum_probs=55.5
Q ss_pred ccEEEcCCC---EEEEEcCcEEEeCCCcEEEEEeCCCccc--ccceeecceEEcCCCccceEE--EEEcCC---------
Q 032989 20 AETKVPARG---KALVPTDLSIAIPEGTYARIAPRSGLAW--KHSMDVGAGVIDADYRGPVGV--ILFNHS--------- 83 (129)
Q Consensus 20 ~~~~i~p~~---~~li~Tg~~v~ip~g~~~~i~~RSsl~~--k~gl~v~~gvID~gY~Gei~i--~l~N~~--------- 83 (129)
|+++-+|.. .-.+..-++-.+|+||-..+- ..+- +.--.+.+|.+|+||+|-+.+ .+.|.+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (418)
T PHA03124 33 EAIIAEPRADSPVLKIDSAIRTALPPGYGIVIS---DTAEGHAAAWEIIPGLVDADYTGLLGILLVLTDDGGNTLAGGEA 109 (418)
T ss_pred hhhhccccCCCceEeehhhhhhcCCCcceEEEe---cccccchhhhhhccceecCCccceeeEEEEEecCCCcccccccc
Confidence 455666643 235666678889999976553 3321 112345799999999997665 445542
Q ss_pred -CCcEEeeCCCEEEEEEEeeccc
Q 032989 84 -DVDFVVKVGDRIAQLIIEKIVT 105 (129)
Q Consensus 84 -~~~~~i~~G~riaQlv~~~~~~ 105 (129)
+..+.+.+|.-=|.|.+.++..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~ 132 (418)
T PHA03124 110 GDGIVIFPPGGVHARLNVIKLAN 132 (418)
T ss_pred CCceEEeCCCceEEEEEEEEecC
Confidence 2458888999889998888653
No 42
>PF06284 Cytomega_UL84: Cytomegalovirus UL84 protein; InterPro: IPR010436 This family consists of several Cytomegalovirus UL84 proteins. The open reading frame UL84 of human cytomegalovirus encodes a multifunctional regulatory protein which is required for viral DNA replication and binds with high affinity to the immediate-early transactivator IE2-p86 [].
Probab=85.31 E-value=3.4 Score=34.84 Aligned_cols=84 Identities=6% Similarity=-0.049 Sum_probs=60.2
Q ss_pred CCeEEEEEcCccEEEcCCCEEEEEcCcEEEeCCCcEEEEEeCCCcccccceeecceEEcCCCccceEEEEEcCCCCcEEe
Q 032989 10 ICYHCILRSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFVV 89 (129)
Q Consensus 10 ~~aG~DL~~~~~~~i~p~~~~li~Tg~~v~ip~g~~~~i~~RSsl~~k~gl~v~~gvID~gY~Gei~i~l~N~~~~~~~i 89 (129)
.+.|+|+++|.|+.++- ...+ .++=+..--|.|++.+.... |+.+..|+|-|--+=||.+...| ..++.+
T Consensus 372 ~~~~LdV~~PyDl~lk~--s~~L--RiYRrfYGp~LGLFvP~~r~----~l~mpVtiWlPRTWLEi~l~~~~--~~g~tl 441 (530)
T PF06284_consen 372 GEGGLDVRLPYDLPLKT--SYTL--RIYRRFYGPFLGLFVPKNRQ----GLKMPVTIWLPRTWLEITLVGSN--EHGVTL 441 (530)
T ss_pred CCCceEEecccceecCC--hhhe--ehhhhhcccceeEecccCcc----ceeeeEEeeeccceEEEEEEeec--cccccc
Confidence 48899999999997732 2222 23333455577888886652 67778899988665566665554 568999
Q ss_pred eCCCEEEEEEEeec
Q 032989 90 KVGDRIAQLIIEKI 103 (129)
Q Consensus 90 ~~G~riaQlv~~~~ 103 (129)
++|+-+.||-|..-
T Consensus 442 ~R~~vLG~LYFiss 455 (530)
T PF06284_consen 442 PRDDVLGRLYFISS 455 (530)
T ss_pred ccCceeeEEEEecc
Confidence 99999999999875
No 43
>PF05784 Herpes_UL82_83: Betaherpesvirus UL82/83 protein N terminus; InterPro: IPR008649 This family represents the N-terminal region of the UL82 and UL83 proteins from Betaherpesvirus sp., such as Human cytomegalovirus (HHV-5) (Human herpesvirus 5). As viruses are reliant upon their host cell to serve as proper environments for their replication, many have evolved mechanisms to alter intracellular conditions to suit their own needs. HHV-5 induces quiescent cells to enter the cell cycle and then arrests them in late G(1), before they enter the S phase, a cell cycle compartment that is presumably favourable for viral replication. The protein product of the HHV-5 UL82 gene, pp71, can accelerate the movement of cells through the G(1) phase of the cell cycle. This activity would help infected cells reach the late G(1) arrest point sooner and thus may stimulate the infectious cycle. pp71 also induces DNA synthesis in quiescent cells, but a pp71 mutant protein that is unable to induce quiescent cells to enter the cell cycle still retains the ability to accelerate the G(1) phase. Thus, the mechanism through which pp71 accelerates G(1) cell cycle progression appears to be distinct from the one that it employs to induce quiescent cells to exit G(0) and subsequently enter the S phase [].; GO: 0009405 pathogenesis; PDB: 3BW9_C.
Probab=81.96 E-value=0.43 Score=38.98 Aligned_cols=75 Identities=20% Similarity=0.218 Sum_probs=0.0
Q ss_pred EEcCccEEEcCCCEEEEEcCcEEEeCCCcE---EEEEeCCCccc--ccceeecceEEcCCCccceEEEEEcCCCCcEEee
Q 032989 16 LRSAAETKVPARGKALVPTDLSIAIPEGTY---ARIAPRSGLAW--KHSMDVGAGVIDADYRGPVGVILFNHSDVDFVVK 90 (129)
Q Consensus 16 L~~~~~~~i~p~~~~li~Tg~~v~ip~g~~---~~i~~RSsl~~--k~gl~v~~gvID~gY~Gei~i~l~N~~~~~~~i~ 90 (129)
|+...+..++|+|++.+.||+.++.+.-.. ++..+.|.-.. +.+|.+.-..+|+-=.++|.+.+.|.++.++...
T Consensus 13 l~~~~~~~~~p~E~k~l~tgl~V~v~~psVicv~q~~~~~~~~~~~~~~L~vkft~~~~~~~~nl~v~V~N~s~r~l~~~ 92 (348)
T PF05784_consen 13 LFSTQDTPFKPHETKILKTGLSVKVSQPSVICVTQETPSSQPPHRDDTDLQVKFTVFDGQEIDNLTVDVHNPSDRPLSPS 92 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEecCCCccCCCcEEEEecCceEEeCCCeEEEEEeccCCCCCcccccccceeeEEEeccccccceEEEEECCCCCcCCCC
Confidence 344567899999999999999999876433 33333333221 1236666777887555789999999988774443
No 44
>PF09160 FimH_man-bind: FimH, mannose binding; InterPro: IPR015243 This domain adopts a secondary structure consisting of a beta sandwich, with nine strands arranged in two sheets in a Greek key topology. It is predominantly found in bacterial mannose-specific adhesins, and is capable of binding to D-mannose []. ; PDB: 3MCY_C 1KLF_D 1QUN_L 1KIU_L 3RFZ_D 2VCO_B 1TR7_A 1UWF_A 3JWN_N.
Probab=70.04 E-value=5.7 Score=28.69 Aligned_cols=97 Identities=20% Similarity=0.141 Sum_probs=50.5
Q ss_pred CCeEEEEEcCccEEEcCCCEEEEEcCcEEE----eCC-CcEEEEEeCCCccc-------ccceee-------------cc
Q 032989 10 ICYHCILRSAAETKVPARGKALVPTDLSIA----IPE-GTYARIAPRSGLAW-------KHSMDV-------------GA 64 (129)
Q Consensus 10 ~~aG~DL~~~~~~~i~p~~~~li~Tg~~v~----ip~-g~~~~i~~RSsl~~-------k~gl~v-------------~~ 64 (129)
.+.-.+++.+-.=.+.+++-.+|+..-.+. -|. .+.=.+..+++.++ +.+|.. ..
T Consensus 11 ~~G~anvyV~L~p~V~~gqNlVvDLS~~i~CkND~p~g~~~Dyv~l~~Gs~~~~~l~~f~g~l~~~g~~YpfPl~s~t~~ 90 (147)
T PF09160_consen 11 GGGSANVYVNLSPSVQVGQNLVVDLSQQIFCKNDDPSGQNVDYVNLTSGSAFGGVLKNFTGSLRYYGSSYPFPLNSETTV 90 (147)
T ss_dssp TCEEEEEEE---SBE-TTSEEEEEGGGTEEEE-SSTT-T--EEEEEEEEEEEHHHHHHEEEEEEETTEEEEES-SS----
T ss_pred CCcceeEEEecCCccccCccEEEEccceEEEECCCCCcceeeeEEEccCCccCchhhhccceEEEeCcCccccccCCceE
Confidence 444457787776678999998998886444 355 46666666655442 111211 01
Q ss_pred eEEcCC-Ccc-ceEEEEEcC-CCCcEEeeCCCEEEEEEEeecccc
Q 032989 65 GVIDAD-YRG-PVGVILFNH-SDVDFVVKVGDRIAQLIIEKIVTP 106 (129)
Q Consensus 65 gvID~g-Y~G-ei~i~l~N~-~~~~~~i~~G~riaQlv~~~~~~~ 106 (129)
-.+.++ |+- .+++-|.-. ....+.|++||.||+|.+.+....
T Consensus 91 ~~~~~~~~~p~p~~LYLtp~~~a~Gv~I~~G~~iAtl~~~k~~t~ 135 (147)
T PF09160_consen 91 VNYQSGNYQPWPIKLYLTPVSAAGGVVINKGDLIATLNMHKTNTY 135 (147)
T ss_dssp EEE-SSS-EE--EEEEEEESTTSSEEEE-TTSEEEEEEEEEEESS
T ss_pred EEecCCCcccccEEEEEEEccCCCcEEEeCCCEEEEEEEEEeccc
Confidence 111111 222 123322221 245599999999999999998754
No 45
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=69.99 E-value=8.3 Score=26.65 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=22.6
Q ss_pred ccEEEcCCCEEEEEcCcEEEeCCC-cEEEEEe
Q 032989 20 AETKVPARGKALVPTDLSIAIPEG-TYARIAP 50 (129)
Q Consensus 20 ~~~~i~p~~~~li~Tg~~v~ip~g-~~~~i~~ 50 (129)
+.++|+|++.+.|+ ..+.+|+. +-|.+++
T Consensus 85 ~~Vtl~~~~sk~V~--~~i~~P~~~f~G~ilG 114 (121)
T PF06030_consen 85 KEVTLPPNESKTVT--FTIKMPKKAFDGIILG 114 (121)
T ss_pred cEEEECCCCEEEEE--EEEEcCCCCcCCEEEe
Confidence 45999999999998 56788975 6666654
No 46
>PF04254 DUF432: Protein of unknown function (DUF432); InterPro: IPR007366 This is an archaeal protein of unknown function.
Probab=66.16 E-value=37 Score=23.56 Aligned_cols=23 Identities=26% Similarity=0.115 Sum_probs=16.1
Q ss_pred cCCCccceEEEEEcCCCCcEEeeC
Q 032989 68 DADYRGPVGVILFNHSDVDFVVKV 91 (129)
Q Consensus 68 D~gY~Gei~i~l~N~~~~~~~i~~ 91 (129)
|+. +|-+++.+.|.+++...+.+
T Consensus 89 ~~~-~av~~v~I~N~s~~~~~v~r 111 (123)
T PF04254_consen 89 DPL-EAVTKVTIRNNSDEWVTVSR 111 (123)
T ss_pred CCe-eEEEEEEEEcCCCCeEEEEE
Confidence 444 77788888888777766653
No 47
>PF03712 Cu2_monoox_C: Copper type II ascorbate-dependent monooxygenase, C-terminal domain; PDB: 1YI9_A 3MLL_A 1SDW_A 3MID_A 1YIP_A 3PHM_A 3MIC_A 3MIB_A 1OPM_A 3MIG_A ....
Probab=64.54 E-value=49 Score=23.62 Aligned_cols=20 Identities=5% Similarity=0.029 Sum_probs=12.8
Q ss_pred CeEEEEEcCccEEEcCCCEE
Q 032989 11 CYHCILRSAAETKVPARGKA 30 (129)
Q Consensus 11 ~aG~DL~~~~~~~i~p~~~~ 30 (129)
|||.=+.....+.||||+..
T Consensus 3 ~agvl~~g~~~~~IPP~~~~ 22 (156)
T PF03712_consen 3 DAGVLELGSSYFSIPPGAES 22 (156)
T ss_dssp EEEEEEEEESSEEE-TT-SE
T ss_pred EEEEEEEcccccccCcCCCc
Confidence 67765555666799999865
No 48
>cd00235 TLP-20 Telokin-like protein-20 (TLP-20) domain; a baculovirus protein that shares some antigenic similarities to the smooth muscle protein telokin, a kinase-related protein
Probab=57.06 E-value=25 Score=24.10 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=22.9
Q ss_pred ccceEEEEEcCCCCcEEeeCCCEEEEEEE
Q 032989 72 RGPVGVILFNHSDVDFVVKVGDRIAQLII 100 (129)
Q Consensus 72 ~Gei~i~l~N~~~~~~~i~~G~riaQlv~ 100 (129)
++.+.++|+| .+|..+++|+.|.|++.
T Consensus 80 ~~~i~viLfn--~kp~~lkk~~~iFki~~ 106 (108)
T cd00235 80 SNGINVILFN--KKPIILKKGSCIFKIKY 106 (108)
T ss_pred CCCeEEEEEE--ccceEEEcCcEEEEEEe
Confidence 3568899998 46999999999999875
No 49
>PF01629 DUF22: Domain of unknown function DUF22; InterPro: IPR002572 This region is found in 1 to 3 copies in archaeal proteins whose function is unknown. It only appears in multiple copies in proteins from Archaeoglobus fulgidus.
Probab=53.57 E-value=70 Score=21.98 Aligned_cols=42 Identities=12% Similarity=0.074 Sum_probs=32.5
Q ss_pred eccCCeEEEEEcCccEEEcCCCEEEEEcCcEEEeCCCcEEEEE
Q 032989 7 FTIICYHCILRSAAETKVPARGKALVPTDLSIAIPEGTYARIA 49 (129)
Q Consensus 7 ~t~~~aG~DL~~~~~~~i~p~~~~li~Tg~~v~ip~g~~~~i~ 49 (129)
.....-.-=|.|.+|+.+..|+...|.. ..+++|++...+..
T Consensus 32 ~~~~g~wepiIAdEdvevk~Ge~~~IkI-k~I~iP~~tIv~p~ 73 (112)
T PF01629_consen 32 RSSVGKWEPIIADEDVEVKKGEVKIIKI-KKIEIPPNTIVMPC 73 (112)
T ss_pred EccceeEEEEEEcCeeEEecCCEEEEEE-EEEecCCCCEEEEc
Confidence 3345555668889999999999988887 56899999865544
No 50
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=50.45 E-value=17 Score=28.52 Aligned_cols=70 Identities=19% Similarity=0.137 Sum_probs=44.7
Q ss_pred EEcCcEEEeCCCcEEEEEeCCCcccccce-eecceEEcCCCccceEEEEEcCCCCcEEeeCCCEEEEEEEeecc
Q 032989 32 VPTDLSIAIPEGTYARIAPRSGLAWKHSM-DVGAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIV 104 (129)
Q Consensus 32 i~Tg~~v~ip~g~~~~i~~RSsl~~k~gl-~v~~gvID~gY~Gei~i~l~N~~~~~~~i~~G~riaQlv~~~~~ 104 (129)
+=-++.+++.+|-..-+.+.|+.+ |+=| .+..|.-.| +.|+|.+.=.-.. ..-.-+.--|.+||||....
T Consensus 22 ~l~~VS~~i~~Ge~lgivGeSGsG-KSTL~r~l~Gl~~p-~~G~I~~~G~~~~-~~~~~~~~~~~VQmVFQDp~ 92 (252)
T COG1124 22 ALNNVSLEIERGETLGIVGESGSG-KSTLARLLAGLEKP-SSGSILLDGKPLA-PKKRAKAFYRPVQMVFQDPY 92 (252)
T ss_pred hhcceeEEecCCCEEEEEcCCCCC-HHHHHHHHhcccCC-CCceEEECCcccC-ccccchhhccceeEEecCCc
Confidence 445688889999888899999988 4333 345776555 7898876421100 00001144688999998753
No 51
>PF07070 Spo0M: SpoOM protein; InterPro: IPR009776 This family consists of several bacterial SpoOM proteins which are thought to control sporulation in Bacillus subtilis.Spo0M exerts certain negative effects on sporulation and its gene expression is controlled by sigmaH [].
Probab=50.05 E-value=39 Score=25.87 Aligned_cols=58 Identities=16% Similarity=0.209 Sum_probs=36.3
Q ss_pred EcCccEEEcCCCEEEEEcCcEEEeCCCcEEEEEeCCCcccccceeecceEEcCCCccceEEE
Q 032989 17 RSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGVI 78 (129)
Q Consensus 17 ~~~~~~~i~p~~~~li~Tg~~v~ip~g~~~~i~~RSsl~~k~gl~v~~gvID~gY~Gei~i~ 78 (129)
.....++|+||+...+|- .+.+|...=.-. ++..+.++.+|.+..+ +||+=...|.|.
T Consensus 75 ~v~~~f~I~~ge~~~iPF--~~~lP~etPiT~-~~~~v~l~T~LdI~~a-vD~~D~D~i~V~ 132 (218)
T PF07070_consen 75 RVSGPFTIEPGEEKEIPF--SFPLPWETPITE-GGMRVWLRTGLDIAGA-VDPGDLDPIEVE 132 (218)
T ss_pred EeCCCEEECCCCEEEEeE--EEECCCCCCccC-CCcEEEEEEEEEeCCC-CCCCCceeEEEe
Confidence 345679999999999994 455564332111 4455555666665444 588766666665
No 52
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=45.68 E-value=14 Score=28.61 Aligned_cols=46 Identities=22% Similarity=0.352 Sum_probs=32.8
Q ss_pred EEcCcEEEeCCCcEEEEEeCCCcccccceeecceEEcCCCccceEEE
Q 032989 32 VPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGVI 78 (129)
Q Consensus 32 i~Tg~~v~ip~g~~~~i~~RSsl~~k~gl~v~~gvID~gY~Gei~i~ 78 (129)
+--++.+.+-+|-.-.++++|+++...-|.+..|+++|. +|++++.
T Consensus 20 ~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~-~G~i~l~ 65 (259)
T COG4525 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS-RGSIQLN 65 (259)
T ss_pred hhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc-cceEEEC
Confidence 334556667777777889999998433345579999987 6887763
No 53
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=44.91 E-value=53 Score=25.41 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=24.0
Q ss_pred cEEEcCCCEEEEEcCcEEEeCCCcEEEEEeCCCc
Q 032989 21 ETKVPARGKALVPTDLSIAIPEGTYARIAPRSGL 54 (129)
Q Consensus 21 ~~~i~p~~~~li~Tg~~v~ip~g~~~~i~~RSsl 54 (129)
..+++||+...+..|+++.++|+.+=.+++..+.
T Consensus 147 ~~t~~aG~~l~L~PGESiTL~Pg~yH~Fw~e~g~ 180 (225)
T PF07385_consen 147 RRTVPAGTQLRLNPGESITLPPGIYHWFWGEGGD 180 (225)
T ss_dssp EEEE-TT-EEEE-TT-EEEE-TTEEEEEEE-TTS
T ss_pred EEEecCCceEEeCCCCeEeeCCCCeeeEEecCCC
Confidence 4789999999999999999999988888886553
No 54
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=41.04 E-value=33 Score=27.05 Aligned_cols=52 Identities=19% Similarity=0.248 Sum_probs=35.9
Q ss_pred cCCCEEEEEcCcEEEeCCCcEEEEEeCCCcccccceeecceEEcCCCccceEEE
Q 032989 25 PARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGVI 78 (129)
Q Consensus 25 ~p~~~~li~Tg~~v~ip~g~~~~i~~RSsl~~k~gl~v~~gvID~gY~Gei~i~ 78 (129)
.|+... +-.++.++||+|-+.-+.++|+-+.-.-|....|.+|+.+ |++.+.
T Consensus 13 yp~~~~-aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~-G~i~~~ 64 (258)
T COG3638 13 YPGGHQ-ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTS-GEILFN 64 (258)
T ss_pred cCCCce-eeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCc-ceEEec
Confidence 455543 3345888999999999999999873222345678999985 665543
No 55
>PF00818 Ice_nucleation: Ice nucleation protein repeat; InterPro: IPR000258 Certain Gram-negative bacteria express proteins that enable them to promote nucleation of ice at relatively high temperatures (above -5C) [, ]. These proteins are localised at the outer membrane surface and can cause frost damage to many plants. The primary structure of the proteins contains a highly repetitive domain that dominates the sequence. The domain comprises a number of 48-residue repeats, which themselves contain 3 blocks of 16 residues, the first 8 of which are identical. It is thought that the repetitive domain may be responsible for aligning water molecules in the seed crystal. [.........48.residues.repeated.domain..........] / / | | \ \ AGYGSTxTagxxssli AGYGSTxTagxxsxlt AGYGSTxTaqxxsxlt [16.residues...] [16.residues...] [16.residues...] ; GO: 0009279 cell outer membrane
Probab=40.81 E-value=12 Score=16.90 Aligned_cols=6 Identities=67% Similarity=1.221 Sum_probs=4.6
Q ss_pred CCcccC
Q 032989 123 GFGSTG 128 (129)
Q Consensus 123 gfGSTG 128 (129)
|||||-
T Consensus 1 GYGSTq 6 (16)
T PF00818_consen 1 GYGSTQ 6 (16)
T ss_pred CCCccc
Confidence 788884
No 56
>PF06088 TLP-20: Nucleopolyhedrovirus telokin-like protein-20 (TLP20); InterPro: IPR009092 The baculovirus, Autographa californica nuclear polyhedrosis virus (AcMNPV), telokin-like protein (Tlp20) lies in a region of the baculoviral genome that is expressed late in the viral replication cycle, however its function is unknown. Tlp20 was discovered using anti-telokin antibodies, telokin being the C-terminal domain of smooth-muscle myosin light-chain kinase []. Both Tlp20 and telokin display a seven-stranded antiparallel beta-barrel structure, although the 3-dimensional structures of the beta-barrels are different and there is no sequence homology between the two. Tlp20 is structurally similar to dUTPase in its fold and trimeric assembly [].; PDB: 1TUL_A.
Probab=40.50 E-value=54 Score=24.22 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=19.3
Q ss_pred cceEEEEEcCCCCcEEeeCCCEEEEEEEee
Q 032989 73 GPVGVILFNHSDVDFVVKVGDRIAQLIIEK 102 (129)
Q Consensus 73 Gei~i~l~N~~~~~~~i~~G~riaQlv~~~ 102 (129)
+.|.++|.|. +|..|++|+.|+|+++..
T Consensus 81 ~~ln~iLfn~--k~~~lkK~~~iF~i~~~~ 108 (169)
T PF06088_consen 81 NGLNAILFNI--KPIVLKKGQCIFKIVYWN 108 (169)
T ss_dssp S--EEEEEES--S-EEE-TT-EEEEEEEE-
T ss_pred CCceEEEEEe--cceeeecCceEEEEEecC
Confidence 5688888885 499999999999999987
No 57
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=35.73 E-value=1.3e+02 Score=19.73 Aligned_cols=65 Identities=17% Similarity=0.325 Sum_probs=33.5
Q ss_pred cEEEcCCCEEEEEcCcEEEeCCCcEEEEEeCCCcccccceeecce--EEcCCCccceEEEEEcCCCCcEEeeCCCEEEEE
Q 032989 21 ETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAG--VIDADYRGPVGVILFNHSDVDFVVKVGDRIAQL 98 (129)
Q Consensus 21 ~~~i~p~~~~li~Tg~~v~ip~g~~~~i~~RSsl~~k~gl~v~~g--vID~gY~Gei~i~l~N~~~~~~~i~~G~riaQl 98 (129)
|+.++|+....+ .+|+++.+.++..++-. .+... .+.++ .+.+.+ ....+.+..++.=|++
T Consensus 3 di~l~~g~~~~~------~~~~~~~~~iyv~~G~~-----~v~~~~~~~~~~-----~~~~l~-~g~~i~~~a~~~~a~~ 65 (104)
T PF05726_consen 3 DIKLEPGASFTL------PLPPGHNAFIYVLEGSV-----EVGGEEDPLEAG-----QLVVLE-DGDEIELTAGEEGARF 65 (104)
T ss_dssp EEEE-TT-EEEE------EEETT-EEEEEEEESEE-----EETTTTEEEETT-----EEEEE--SECEEEEEESSSSEEE
T ss_pred EEEECCCCEEEe------ecCCCCEEEEEEEECcE-----EECCCcceECCC-----cEEEEC-CCceEEEEECCCCcEE
Confidence 678888887444 46899999888866642 12111 12222 233333 5556666666444555
Q ss_pred EEee
Q 032989 99 IIEK 102 (129)
Q Consensus 99 v~~~ 102 (129)
+++.
T Consensus 66 lll~ 69 (104)
T PF05726_consen 66 LLLG 69 (104)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5543
No 58
>COG2430 Uncharacterized conserved protein [Function unknown]
Probab=35.70 E-value=2.1e+02 Score=22.26 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=15.5
Q ss_pred CCccceEEEEEcCCCCcEEe
Q 032989 70 DYRGPVGVILFNHSDVDFVV 89 (129)
Q Consensus 70 gY~Gei~i~l~N~~~~~~~i 89 (129)
-.+|.+++.+.|.+++.+.|
T Consensus 143 ~~egv~kl~v~N~sd~wv~I 162 (236)
T COG2430 143 PGEGVAKLTVVNTSDEWVTI 162 (236)
T ss_pred cccceEEEEEEecCCCeEEE
Confidence 34789999999998876444
No 59
>KOG1614 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp45 [Translation, ribosomal structure and biogenesis]
Probab=35.39 E-value=30 Score=27.43 Aligned_cols=65 Identities=14% Similarity=0.109 Sum_probs=41.5
Q ss_pred cEEEcCCCEEEEEcCcEEEeCC--CcEEEEEeCCCcccccceeecceEEcCCCcc------ceEEEEEcCCCCcEEeeC
Q 032989 21 ETKVPARGKALVPTDLSIAIPE--GTYARIAPRSGLAWKHSMDVGAGVIDADYRG------PVGVILFNHSDVDFVVKV 91 (129)
Q Consensus 21 ~~~i~p~~~~li~Tg~~v~ip~--g~~~~i~~RSsl~~k~gl~v~~gvID~gY~G------ei~i~l~N~~~~~~~i~~ 91 (129)
|+++.+.+..+-|.-++-.+|- .|++..+.-+.+. |.++. +|||.+.- .+.+. .|...+-+.|++
T Consensus 164 dvTv~g~ev~ihp~eEr~PvPL~I~HmPIC~tf~ffn-kG~iv----viDpt~~Ee~~~dGs~vVt-~Nk~rEVc~i~k 236 (291)
T KOG1614|consen 164 DVTVGGEEVIIHPVEEREPVPLSIHHMPICFTFGFFN-KGEIV----VIDPTEKEEAVMDGSMVVT-MNKNREVCAIQK 236 (291)
T ss_pred CcccccceeEecChhccCCcceeeeeccceEEEEEec-CceEE----EeCCcHHHHhccCceEEEE-EcCCccEEEEec
Confidence 5677777777777777777665 3566677666665 54444 68998853 34444 465566666665
No 60
>PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A.
Probab=32.32 E-value=1.2e+02 Score=18.36 Aligned_cols=31 Identities=13% Similarity=0.132 Sum_probs=17.8
Q ss_pred EEcCccEEEcCCCEEEEEcCcEEEeCCCcEEEEEe
Q 032989 16 LRSAAETKVPARGKALVPTDLSIAIPEGTYARIAP 50 (129)
Q Consensus 16 L~~~~~~~i~p~~~~li~Tg~~v~ip~g~~~~i~~ 50 (129)
|..-+.+.|+||++..+. +.+++.-.+.+..
T Consensus 21 L~gF~rv~l~pGes~~v~----~~l~~~~l~~~d~ 51 (71)
T PF14310_consen 21 LVGFERVSLAPGESKTVS----FTLPPEDLAYWDE 51 (71)
T ss_dssp EEEEEEEEE-TT-EEEEE----EEEEHHHHEEEET
T ss_pred ecceEEEEECCCCEEEEE----EEECHHHEeeEcC
Confidence 344467889999988776 4555544444443
No 61
>PRK13202 ureB urease subunit beta; Reviewed
Probab=30.93 E-value=81 Score=21.47 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=16.3
Q ss_pred EcCCCccceEEEEEcCCCCcEEe
Q 032989 67 IDADYRGPVGVILFNHSDVDFVV 89 (129)
Q Consensus 67 ID~gY~Gei~i~l~N~~~~~~~i 89 (129)
+++|.+-.+++.+.|.++.|+++
T Consensus 15 ln~grr~~~~l~V~NtGDRPIQV 37 (104)
T PRK13202 15 MNAAALSRLQMRIINAGDRPVQV 37 (104)
T ss_pred eCCCCCceEEEEEEeCCCCceEE
Confidence 44554456888889988877654
No 62
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=30.17 E-value=84 Score=19.07 Aligned_cols=22 Identities=5% Similarity=-0.008 Sum_probs=16.5
Q ss_pred CccEEEcCCCEEEEEcCcEEEe
Q 032989 19 AAETKVPARGKALVPTDLSIAI 40 (129)
Q Consensus 19 ~~~~~i~p~~~~li~Tg~~v~i 40 (129)
+.|+.|.||++..++-|.++-+
T Consensus 35 ~~D~~L~~G~~l~l~~g~~vvl 56 (63)
T PF11142_consen 35 PDDYWLQAGDSLRLRRGGRVVL 56 (63)
T ss_pred CCCEEECCCCEEEeCCCCEEEE
Confidence 4678888888887777766654
No 63
>cd09215 Thaumatin-like the sweet-tasting protein, thaumatin, and thaumatin-like proteins involved in host defense. This family is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii and thaumatin-like proteins (TLPs) involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs included in this family are such proteins as zeamatin, found in high concentrations in cereal seeds; osmotin, a salt-induced protein in osmotically stressed plants; and PpAZ44, a propylene-induced TLP in abscission of young fruit. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun
Probab=29.55 E-value=73 Score=23.14 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=24.1
Q ss_pred ccEEEcCCCEEEEEcCcEEEeCCCcEEEEEeCCCcccc
Q 032989 20 AETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWK 57 (129)
Q Consensus 20 ~~~~i~p~~~~li~Tg~~v~ip~g~~~~i~~RSsl~~k 57 (129)
..+.|.|+++ ..+.+|.+|.+.|++|.+..+.
T Consensus 26 gGf~L~~g~s------~~~~~p~~wsGriWgRTgC~~~ 57 (157)
T cd09215 26 GGFELNPGET------KSFDVSAGWQGRIWARTNCSFN 57 (157)
T ss_pred CCEecCCCCe------eEEecCCCCeEeeecccccccC
Confidence 3466677765 3455799999999999998754
No 64
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=26.43 E-value=91 Score=25.49 Aligned_cols=65 Identities=18% Similarity=0.324 Sum_probs=46.5
Q ss_pred EEEeCC-CcEEEEEeCCCcccccce-eecceEEcCCCccceEE--EEEcCCCCcEEeeCCCEEEEEEEeecc
Q 032989 37 SIAIPE-GTYARIAPRSGLAWKHSM-DVGAGVIDADYRGPVGV--ILFNHSDVDFVVKVGDRIAQLIIEKIV 104 (129)
Q Consensus 37 ~v~ip~-g~~~~i~~RSsl~~k~gl-~v~~gvID~gY~Gei~i--~l~N~~~~~~~i~~G~riaQlv~~~~~ 104 (129)
.+.+|. |..+ ++++|+-+ |.-+ .+..|.+-|+ .|+|.+ ...+.+.+.+.+++-.|-.=.||+...
T Consensus 18 ~~~~p~~GvTA-lFG~SGsG-KTslin~IaGL~rPd-eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDAR 86 (352)
T COG4148 18 NFTLPARGITA-LFGPSGSG-KTSLINMIAGLTRPD-EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDAR 86 (352)
T ss_pred eccCCCCceEE-EecCCCCC-hhhHHHHHhccCCcc-ccEEEECCEEeecccCCcccChhhheeeeEeeccc
Confidence 345676 6666 89999987 4434 4468888888 577766 234446788999998888888887653
No 65
>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]
Probab=26.31 E-value=2.2e+02 Score=23.41 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=30.9
Q ss_pred eccCCeEEEEEcCc-cEEEcCCCEEEEEcCcEEEe--C---CCcEEEEEe
Q 032989 7 FTIICYHCILRSAA-ETKVPARGKALVPTDLSIAI--P---EGTYARIAP 50 (129)
Q Consensus 7 ~t~~~aG~DL~~~~-~~~i~p~~~~li~Tg~~v~i--p---~g~~~~i~~ 50 (129)
+-+--..+++++.- .+.+.|+|..+|+-|+++.+ | .||...+++
T Consensus 159 iVPQ~G~L~I~TEfGrllV~P~EI~VIpqG~RFsi~v~~~sRGYilEvYg 208 (446)
T KOG1417|consen 159 IVPQQGRLWITTEFGRLLVTPNEIAVIPQGIRFSIDVPGPSRGYILEVYG 208 (446)
T ss_pred EecccCcEEEEeeccceeecccceEEeecccEEEEecCCCCcceEEEEec
Confidence 33444455665553 57899999999999998875 3 477776664
No 66
>COG4326 Spo0M Sporulation control protein [General function prediction only]
Probab=25.98 E-value=1.2e+02 Score=23.47 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=31.3
Q ss_pred EEcCccEEEcCCCEEEEEcCcEEEeCCCcE-----EEEEeCCCcccccceeecceEEcCCCccceEEE
Q 032989 16 LRSAAETKVPARGKALVPTDLSIAIPEGTY-----ARIAPRSGLAWKHSMDVGAGVIDADYRGPVGVI 78 (129)
Q Consensus 16 L~~~~~~~i~p~~~~li~Tg~~v~ip~g~~-----~~i~~RSsl~~k~gl~v~~gvID~gY~Gei~i~ 78 (129)
.+.++.++|+|||.+.+| ..+.+|-+.- +.++-+.++-.+ +-|||-=+..|.+.
T Consensus 94 ~rl~~~fTIqpgEe~~fp--f~l~lP~~tPvT~G~~~V~v~TgLDI~-------~aidp~D~D~l~Vr 152 (270)
T COG4326 94 WRLPYAFTIQPGEERNFP--FELSLPWNTPVTIGDAKVWVETGLDIA-------LAIDPTDKDILTVR 152 (270)
T ss_pred EeecceEEecCCceEecc--EEEecCCCCceeecceeEEEEeccchh-------ccCCCcccceEEEe
Confidence 355678999999998888 4456665431 223444444322 23566555545543
No 67
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=25.85 E-value=2.7e+02 Score=20.33 Aligned_cols=51 Identities=14% Similarity=0.194 Sum_probs=34.7
Q ss_pred EEEeccCCeEEEEEcC---ccEEEcCCCEEEEEcCcEEEe--CCCcEEEEEeCCCc
Q 032989 4 FFFFTIICYHCILRSA---AETKVPARGKALVPTDLSIAI--PEGTYARIAPRSGL 54 (129)
Q Consensus 4 ~~~~t~~~aG~DL~~~---~~~~i~p~~~~li~Tg~~v~i--p~g~~~~i~~RSsl 54 (129)
+|+.-.++.-+++.-. +++.|.+|+..++|-|+.-.. .++..+++.-|.+.
T Consensus 51 ~FyqleG~~~l~v~d~g~~~~v~L~eGd~flvP~gvpHsP~r~~~t~~LvIE~~r~ 106 (159)
T TIGR03037 51 FFYQLKGEMYLKVTEEGKREDVPIREGDIFLLPPHVPHSPQRPAGSIGLVIERKRP 106 (159)
T ss_pred EEEEEcceEEEEEEcCCcEEEEEECCCCEEEeCCCCCcccccCCCcEEEEEEeCCC
Confidence 4556666666655554 389999999999998865442 35777777766554
No 68
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=25.72 E-value=64 Score=21.31 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=13.8
Q ss_pred EcCccEEEcCCCEEEEEcCcEEEeCCC
Q 032989 17 RSAAETKVPARGKALVPTDLSIAIPEG 43 (129)
Q Consensus 17 ~~~~~~~i~p~~~~li~Tg~~v~ip~g 43 (129)
..+..++|+||++..+. +.+.+|++
T Consensus 59 ~~~~~vTV~ag~s~~v~--vti~~p~~ 83 (112)
T PF06280_consen 59 FSPDTVTVPAGQSKTVT--VTITPPSG 83 (112)
T ss_dssp ---EEEEE-TTEEEEEE--EEEE--GG
T ss_pred eCCCeEEECCCCEEEEE--EEEEehhc
Confidence 34457899999988887 44555553
No 69
>KOG4680 consensus Uncharacterized conserved protein, contains ML domain [General function prediction only]
Probab=25.42 E-value=84 Score=22.71 Aligned_cols=45 Identities=20% Similarity=0.136 Sum_probs=32.9
Q ss_pred eeEEEeccCCeEEEEEcCccEEEcCCCEEEEEcC-cEEEeCCCcEE
Q 032989 2 VSFFFFTIICYHCILRSAAETKVPARGKALVPTD-LSIAIPEGTYA 46 (129)
Q Consensus 2 ~~~~~~t~~~aG~DL~~~~~~~i~p~~~~li~Tg-~~v~ip~g~~~ 46 (129)
|+++++...+--+||+-...+-++||+..+-.+- +--..|||-+-
T Consensus 77 V~y~gi~ihsethDLCdetsCPVepG~f~~~hsq~LPg~tPPG~Y~ 122 (153)
T KOG4680|consen 77 VSYGGIRIHSETHDLCDETSCPVEPGDFLVAHSQVLPGYTPPGSYV 122 (153)
T ss_pred EEEeeEEEeeccccccccccCCcCcCceeeeeeEeccCcCCCceEE
Confidence 6888999999999999888899999987544432 11236777554
No 70
>cd08961 GH64-TLP-SF glycoside hydrolase family 64 (beta-1,3-glucanases which produce specific pentasaccharide oligomers) and thaumatin-like proteins. This superfamily includes glycoside hydrolases of family 64 (GH64), these are mostly bacterial beta-1,3-glucanases which cleave long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers and are implicated in fungal cell wall degradation. Also included in this superfamily are thaumatin, the sweet-tasting protein from the African berry Thaumatococcus daniellii, and thaumatin-like proteins (TLPs) which are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Like GH64s, some TLPs also hydrolyze the beta-1,3-glucans of the type commonly found in fungal walls. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. Several members of the plant TLP
Probab=25.16 E-value=80 Score=22.79 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=23.4
Q ss_pred cEEEcCCCEEEEEcCcEEEeCCCcEEEEEeCCCcccc
Q 032989 21 ETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWK 57 (129)
Q Consensus 21 ~~~i~p~~~~li~Tg~~v~ip~g~~~~i~~RSsl~~k 57 (129)
-..+.||++. .+.+|.+|.+.|++|.+..+.
T Consensus 28 g~~L~pG~s~------si~vP~~wsGRIW~RtgC~~~ 58 (153)
T cd08961 28 GPGLAPGRST------TIQIPKGFSGRIWFRTGCSMD 58 (153)
T ss_pred ccccCCCCcE------EEEecCCceEEEEEecCCccc
Confidence 3567777763 456899999999999887543
No 71
>PF12852 Cupin_6: Cupin
Probab=25.05 E-value=2.4e+02 Score=20.06 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=25.3
Q ss_pred eeEEEeccCCeEEEEEc-CccEEEcCCCEEEEEcCcEEEe
Q 032989 2 VSFFFFTIICYHCILRS-AAETKVPARGKALVPTDLSIAI 40 (129)
Q Consensus 2 ~~~~~~t~~~aG~DL~~-~~~~~i~p~~~~li~Tg~~v~i 40 (129)
..|..++.+...+.+-- .+.+.+.+|+.++++-|..-.+
T Consensus 36 ~~fh~V~~G~~~l~~~~~~~~~~L~~GDivllp~g~~H~l 75 (186)
T PF12852_consen 36 ASFHVVLRGSCWLRVPGGGEPIRLEAGDIVLLPRGTAHVL 75 (186)
T ss_pred eEEEEEECCeEEEEEcCCCCeEEecCCCEEEEcCCCCeEe
Confidence 35667777776666544 4567777777777776654444
No 72
>cd09218 TLP-PA allergenic/antifungal thaumatin-like proteins: plant and animal homologs. This subfamily is represented by the thaumatin-like proteins (TLPs), Cherry Allergen Pru Av 2 TLP, Peach PpAZ44 TLP (a propylene-induced TLP in abscission), the Caenorhabditis elegans thaumatin family member (thn-6), and other plant and animal homologs. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Due to their inducible expression by environmental stresses such as pathogen/pest attack, drought and cold, plant TLPs are classified as the pathogenesis-related (PR) protein family 5 (PR5). Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3; Japanese cedar, Cry j3). TLPs are three-domain, crescent-fold structures with either an electronegative, ele
Probab=24.47 E-value=90 Score=23.94 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=23.5
Q ss_pred ccEEEcCCCEEEEEcCcEEEeCCCcEEEEEeCCCcccc
Q 032989 20 AETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWK 57 (129)
Q Consensus 20 ~~~~i~p~~~~li~Tg~~v~ip~g~~~~i~~RSsl~~k 57 (129)
..+.|.|+++ ..+.+|.+|.+.|++|.+....
T Consensus 28 gGf~L~~g~s------~~~~vp~~WsGriWaRTgC~~~ 59 (219)
T cd09218 28 GGFELAPGQS------RTIDAPSGWSGRFWGRTGCSFD 59 (219)
T ss_pred CCEEcCCCCe------EEEeCCCCcceeeeeccCCCCC
Confidence 3466777765 3455788999999999887643
No 73
>cd00105 KH-I K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that belong to different protein folds, but they share a single KH motif. The KH motif is folded into a beta alpha alpha beta unit. In addition to the core, type II KH domains (e.g. ribosomal protein S3) include N-terminal extension and type I KH domains (e.g. hnRNP K) contain C-terminal extension.
Probab=23.38 E-value=66 Score=18.46 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=18.8
Q ss_pred cEEEeCCCcEEEEEeCCCcccc
Q 032989 36 LSIAIPEGTYARIAPRSGLAWK 57 (129)
Q Consensus 36 ~~v~ip~g~~~~i~~RSsl~~k 57 (129)
+.+.+|..+++.+.++.+-..+
T Consensus 2 ~~i~ip~~~~~~vIG~~G~~i~ 23 (64)
T cd00105 2 ERVLVPSSLVGRIIGKGGSTIK 23 (64)
T ss_pred EEEEEchhhcceeECCCCHHHH
Confidence 4678999999999999997655
No 74
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=23.09 E-value=3.2e+02 Score=20.30 Aligned_cols=51 Identities=12% Similarity=0.140 Sum_probs=33.8
Q ss_pred EEEeccCCeEEEEEcC---ccEEEcCCCEEEEEcCcEEEe--CCCcEEEEEeCCCc
Q 032989 4 FFFFTIICYHCILRSA---AETKVPARGKALVPTDLSIAI--PEGTYARIAPRSGL 54 (129)
Q Consensus 4 ~~~~t~~~aG~DL~~~---~~~~i~p~~~~li~Tg~~v~i--p~g~~~~i~~RSsl 54 (129)
+|+.=.++.-+++.-. +++.|.+|+..++|-|+.-.. .++..+++.-|.+.
T Consensus 57 ~FyqleG~~~l~v~d~g~~~~v~L~eGd~fllP~gvpHsP~r~~~tv~LviE~~r~ 112 (177)
T PRK13264 57 FFYQLEGDMYLKVQEDGKRRDVPIREGEMFLLPPHVPHSPQREAGSIGLVIERKRP 112 (177)
T ss_pred EEEEECCeEEEEEEcCCceeeEEECCCCEEEeCCCCCcCCccCCCeEEEEEEeCCC
Confidence 4555566655556544 478899999999988864432 35777777766554
No 75
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=22.68 E-value=1.1e+02 Score=19.44 Aligned_cols=18 Identities=17% Similarity=0.230 Sum_probs=10.9
Q ss_pred ccceEEEEEcCCCCcEEe
Q 032989 72 RGPVGVILFNHSDVDFVV 89 (129)
Q Consensus 72 ~Gei~i~l~N~~~~~~~i 89 (129)
.|.|.|.|.|.+..++.+
T Consensus 19 ~g~l~l~l~N~g~~~~~~ 36 (89)
T PF05506_consen 19 TGNLRLTLSNPGSAAVTF 36 (89)
T ss_pred CCEEEEEEEeCCCCcEEE
Confidence 356777777766554443
No 76
>PF04489 DUF570: Protein of unknown function (DUF570) ; InterPro: IPR007578 This proteins in this entry belong to the herpesvirus U10 family; there function is unknown.
Probab=22.62 E-value=4.8e+02 Score=22.16 Aligned_cols=83 Identities=16% Similarity=0.186 Sum_probs=56.4
Q ss_pred CCeEEEEEcCccEEEcCCCEEEEEcCcEEEeCCCc-EEEEEeCCCccccccee-ecceEEcCCCccc-eEEEEEcCCCCc
Q 032989 10 ICYHCILRSAAETKVPARGKALVPTDLSIAIPEGT-YARIAPRSGLAWKHSMD-VGAGVIDADYRGP-VGVILFNHSDVD 86 (129)
Q Consensus 10 ~~aG~DL~~~~~~~i~p~~~~li~Tg~~v~ip~g~-~~~i~~RSsl~~k~gl~-v~~gvID~gY~Ge-i~i~l~N~~~~~ 86 (129)
+..-+-++||.|+...++....|..+++..=|.+. +.++ |++--. +.. ....++- .|+ |+|.|+-. ...
T Consensus 343 n~~~ltVhAPYDI~F~~~~~h~V~ldIrY~~~~~r~cFLV---s~~p~e-~~F~T~m~vW~---~~~PLkiTL~S~-~~~ 414 (429)
T PF04489_consen 343 NPFELTVHAPYDIHFYHSRRHTVELDIRYTQPNDRQCFLV---SNLPNE-DSFHTGMTVWR---PDEPLKITLWSP-SRN 414 (429)
T ss_pred CCceEEEeCcceEEecCCccEEEEeeeEEcccCCceEEEE---ecCCCC-CeeEeeeEEec---CCCceEEEEecC-CCc
Confidence 34556688999999999988888888887777776 3333 333211 111 1222332 345 99999875 567
Q ss_pred EEeeCCCEEEEEEE
Q 032989 87 FVVKVGDRIAQLII 100 (129)
Q Consensus 87 ~~i~~G~riaQlv~ 100 (129)
..|..|.-||-|-.
T Consensus 415 LviPqGtPIA~Ly~ 428 (429)
T PF04489_consen 415 LVIPQGTPIATLYQ 428 (429)
T ss_pred eEccCCCceeEEEe
Confidence 89999999998753
No 77
>cd09217 TLP-P thaumatin and allergenic/antifungal thaumatin-like proteins: plant homologs. This subfamily is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii, allergenic/antifungal Thaumatin-like proteins (TLPs), and related plant proteins. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs in this subfamily include such proteins as zeamatin, found in high concentrations in cereal seeds, and osmotin, a salt-induced protein in osmotically stressed plants. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3
Probab=21.82 E-value=1.2e+02 Score=21.72 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=22.2
Q ss_pred cEEEcCCCEEEEEcCcEEEeCCC-cEEEEEeCCCccc
Q 032989 21 ETKVPARGKALVPTDLSIAIPEG-TYARIAPRSGLAW 56 (129)
Q Consensus 21 ~~~i~p~~~~li~Tg~~v~ip~g-~~~~i~~RSsl~~ 56 (129)
.+.|.||+... +.+|++ |.+.+++|.+..+
T Consensus 21 G~~L~~g~~~~------~~~p~~~w~griW~RTgC~~ 51 (151)
T cd09217 21 GRQLNPGQSWT------IDVPAGTAGGRIWGRTGCSF 51 (151)
T ss_pred CEeCCCCCeEE------EEcCCCCceEEEeeecCCCc
Confidence 45666666533 457887 9999999999864
No 78
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=21.74 E-value=1.2e+02 Score=26.64 Aligned_cols=52 Identities=21% Similarity=0.293 Sum_probs=38.9
Q ss_pred EEEcCcEEEeCCCcEEEEEeCCCcccccceeecceEEcCCCccceEEE---EEcCC
Q 032989 31 LVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGVI---LFNHS 83 (129)
Q Consensus 31 li~Tg~~v~ip~g~~~~i~~RSsl~~k~gl~v~~gvID~gY~Gei~i~---l~N~~ 83 (129)
.+..++.+.+++|-..-+.++|+.+.-.-+.+..|.--| |.|+|.+. +.|.+
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~-~~G~I~vng~~l~~l~ 389 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP-TQGEIRVNGIDLRDLS 389 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC-CCceEEECCccccccC
Confidence 566778899999999899999999833223446777554 99999876 66655
No 79
>PF08615 RNase_H2_suC: Ribonuclease H2 non-catalytic subunit (Ylr154p-like); InterPro: IPR013924 Whereas bacterial and archaeal RNases H2 are active as single polypeptides, the Saccharomyces cerevisiae (Baker's yeast) homologue, Rnh2Ap, when expressed in Escherichia coli, fails to produce an active RNase H2. For RNase H2 activity three proteins are required [Rnh2Ap (Rnh201p), Ydr279p (Rnh202p) and Ylr154p (Rnh203p)]. Deletion of any one of the proteins or mutations in the catalytic site in Rnh2A leads to loss of RNase H2 activity []. RNase H2 is an endonuclease that specifically degrades the RNA of RNA:DNA hybrids. It participates in DNA replication, possibly by mediating the removal of lagging-strand Okazaki fragment RNA primers during DNA replication. This entry represents the non-catalytic C subunit of RNase H2, which in S. cerevisiae is Q12338 from SWISSPROT (Ylr154p/Rnh203p).; PDB: 3PUF_L 3P56_C 3P5J_C 3KIO_C.
Probab=21.64 E-value=87 Score=21.61 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=15.4
Q ss_pred CcEEEeCCCcEEEEEeCCCcc
Q 032989 35 DLSIAIPEGTYARIAPRSGLA 55 (129)
Q Consensus 35 g~~v~ip~g~~~~i~~RSsl~ 55 (129)
|..+.+|+||.+.++.++.-.
T Consensus 52 G~~l~lP~gy~g~vl~~~~~~ 72 (137)
T PF08615_consen 52 GKELSLPEGYRGVVLSKSNKP 72 (137)
T ss_dssp EEEEE--TTEEEEEEECCTTS
T ss_pred ccEeecCCCceEEEEEecCCC
Confidence 466789999999999887754
No 80
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=21.64 E-value=75 Score=25.97 Aligned_cols=68 Identities=16% Similarity=0.240 Sum_probs=47.8
Q ss_pred EEcCcEEEeCCCcEEEEEeCCCcccccceeecceEEcCCCccceEEEEEcCCCCcEEeeCCCEEEEEEEeecc
Q 032989 32 VPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIV 104 (129)
Q Consensus 32 i~Tg~~v~ip~g~~~~i~~RSsl~~k~gl~v~~gvID~gY~Gei~i~l~N~~~~~~~i~~G~riaQlv~~~~~ 104 (129)
+--++.+++.+|-+.-+.+-|+.+.-.-|.+.+|..+|+ .|+|.+-=...++ ++|.+|=.=|||+.+.
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~-~G~I~i~g~~vt~----l~P~~R~iamVFQ~yA 85 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT-SGEILIDGRDVTD----LPPEKRGIAMVFQNYA 85 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEECCC----CChhHCCEEEEeCCcc
Confidence 334577888999888899999998333344568887766 5888774222222 7788888888888864
No 81
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=21.26 E-value=86 Score=17.45 Aligned_cols=15 Identities=20% Similarity=0.220 Sum_probs=10.3
Q ss_pred EEEEcCCCCcEEeeC
Q 032989 77 VILFNHSDVDFVVKV 91 (129)
Q Consensus 77 i~l~N~~~~~~~i~~ 91 (129)
+.+.|.++.++.|..
T Consensus 2 F~~~N~g~~~L~I~~ 16 (45)
T PF07610_consen 2 FEFTNTGDSPLVITD 16 (45)
T ss_pred EEEEECCCCcEEEEE
Confidence 457788877776654
No 82
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=20.36 E-value=75 Score=26.11 Aligned_cols=71 Identities=17% Similarity=0.183 Sum_probs=50.1
Q ss_pred EEEcCcEEEeCCCcEEEEEeCCCcccccceeecceEEcCCCccceEEEEEcCCCCcEEeeCCCEEEEEEEeecccc
Q 032989 31 LVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTP 106 (129)
Q Consensus 31 li~Tg~~v~ip~g~~~~i~~RSsl~~k~gl~v~~gvID~gY~Gei~i~l~N~~~~~~~i~~G~riaQlv~~~~~~~ 106 (129)
.+--++.+.+++|-+..+++-|+.+.-.-|....|.-+|+ .|+|.+-=.+.++ ++|..|=.=+||..|.-.
T Consensus 19 ~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~-~G~I~l~G~~i~~----lpp~kR~ig~VFQ~YALF 89 (352)
T COG3842 19 TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS-SGEILLDGEDITD----VPPEKRPIGMVFQSYALF 89 (352)
T ss_pred eEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEECCC----CChhhcccceeecCcccC
Confidence 3444578889999888899999998333345578888887 4777664333322 777788888888887544
No 83
>TIGR00187 ribE riboflavin synthase, alpha subunit. The name ribE was selected, from among alternatives including ribB and ribC, to match the usage in EcoCyc.
Probab=20.35 E-value=90 Score=23.51 Aligned_cols=43 Identities=14% Similarity=0.215 Sum_probs=30.4
Q ss_pred cEEEe-CCCcEEEEEeCCCcccccceeecceEEcCCCccceEEEEEcC
Q 032989 36 LSIAI-PEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNH 82 (129)
Q Consensus 36 ~~v~i-p~g~~~~i~~RSsl~~k~gl~v~~gvID~gY~Gei~i~l~N~ 82 (129)
+.+++ |+.+..++..+.|.+.. |+.+...-++.+ ...+.|.-+
T Consensus 121 ~~~~~~p~~~~~yiv~KGsIaid-GvSLTV~~v~~~---~f~v~lIP~ 164 (200)
T TIGR00187 121 FWFKLQDSELMKYIVEKGSIAVD-GISLTIGKVTET---RFCVSLIPH 164 (200)
T ss_pred EEEEECCHHHHhccccCCEEEEe-eeEEEEEeEcCC---EEEEEEehH
Confidence 35678 78899999999999876 887765555543 366665543
Done!