Query 032992
Match_columns 129
No_of_seqs 101 out of 637
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 13:42:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032992.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032992hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e50_A Protein SET; histone ch 100.0 1.1E-40 3.7E-45 258.0 6.4 116 6-124 70-201 (225)
2 3fs3_A Nucleosome assembly pro 100.0 1.9E-38 6.6E-43 258.5 8.4 115 12-126 109-251 (359)
3 3kyp_A Pfnaps, nucleosome asse 100.0 4.7E-39 1.6E-43 243.8 2.3 117 6-126 40-171 (193)
4 2ayu_A Nucleosome assembly pro 100.0 1.5E-37 5.1E-42 258.0 10.3 118 9-126 180-326 (417)
5 2zd7_A VPS75, vacuolar protein 100.0 2.4E-37 8.1E-42 244.1 8.7 119 6-124 46-191 (264)
6 3tjj_A Peroxiredoxin-4; thiore 23.0 18 0.0006 27.1 0.0 17 90-106 224-240 (254)
7 3dby_A Uncharacterized protein 19.8 39 0.0013 26.1 1.3 25 16-40 16-41 (269)
8 2cvb_A Probable thiol-disulfid 19.5 36 0.0012 23.1 1.0 17 90-106 169-185 (188)
9 2oxg_Z SOXZ protein; immunoglo 19.2 47 0.0016 21.9 1.5 49 21-70 24-76 (108)
10 1n8j_A AHPC, alkyl hydroperoxi 18.7 23 0.00077 24.6 -0.2 15 91-105 162-176 (186)
No 1
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=100.00 E-value=1.1e-40 Score=258.03 Aligned_cols=116 Identities=27% Similarity=0.581 Sum_probs=91.8
Q ss_pred ccccccCCCCchHHHHHhcChhhhhhhccCchhHhccccceEEEEeCCCC-ceEEEEEeCCCCCccCcEEEEEEEeccCC
Q 032992 6 DKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSE-GFKLEFTFGPNPYFKNSVLEKTYRMIDET 84 (129)
Q Consensus 6 ~~~~~i~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~v~~~~d~~-~f~i~F~F~~NpyF~N~~L~K~~~~~~~~ 84 (129)
.|+++|++||+||++||+||+.++.+|+++|+++|+||+||+|++.++++ ||+|+|+|++||||+|++|+|+|++..+|
T Consensus 70 kR~eII~~IP~FW~tal~n~~~l~~~i~e~De~iL~~L~dI~v~~~~d~~~gf~i~F~F~~N~yF~N~vLtK~y~~~~~g 149 (225)
T 2e50_A 70 KRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHMNESG 149 (225)
T ss_dssp HHHHHHTTSTTHHHHHHHTSHHHHTTCCHHHHHHGGGEEEEEEEECCSSCCCEEEEEEECSCSSBSCSEEEEEEC-----
T ss_pred HHHHHHhccccHHHHHHhcChhhhhhccHhHHHHHHhcCeeEEEEccCCCCceEEEEEeCCCCCccCCEEEEEEEecCCC
Confidence 57899999999999999999999999999999999999999999988765 99999999999999999999999999888
Q ss_pred CeeeeeeeeeeeEecCCCCccccc---------------ccceeeccCCCCCCCC
Q 032992 85 DIVLEEAIGTVIHWYPGQCWIEKA---------------ERSFFNFFEPLEVPTD 124 (129)
Q Consensus 85 ~~~~~~~~~t~I~Wk~gk~~t~~~---------------~~SFF~~F~~~~~p~~ 124 (129)
++ .+++|+|+||+|+++|++. ..|||+||+++..|+.
T Consensus 150 ~~---~s~~t~I~Wk~gkd~t~~~~~kk~~~~~~r~~~~~~SFF~fF~~~~~~~~ 201 (225)
T 2e50_A 150 DP---SSKSTEIKWKSGKDMTKRSSQTQNKASRKRQHEEPESFFTWFTDHSDAGA 201 (225)
T ss_dssp -----CEEECCCCBCSSCCC----------------------CGGGGC------C
T ss_pred Cc---ccCCCcceecCCCCccchhhhhcccccCcccCCCCCCcceecCCCCCCch
Confidence 76 4899999999999998652 2799999999988764
No 2
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Probab=100.00 E-value=1.9e-38 Score=258.55 Aligned_cols=115 Identities=39% Similarity=0.696 Sum_probs=95.1
Q ss_pred CCCCchHHHHHhcChhhhhhhccCchhHhccccceEEEEeC----CCCceEEEEEeCCCCCccCcEEEEEEEeccC---C
Q 032992 12 KGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRIN----DSEGFKLEFTFGPNPYFKNSVLEKTYRMIDE---T 84 (129)
Q Consensus 12 ~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~v~~~~----d~~~f~i~F~F~~NpyF~N~~L~K~~~~~~~---~ 84 (129)
++||+||++||+||++++.+|+++|+++|+||+||+|++.+ ++++|+|+|+|++||||+|++|+|+|++... +
T Consensus 109 kgIP~FWltvl~Nhp~ls~~I~e~De~iL~yL~DI~Ve~l~~~~~~~~gfkI~F~F~eNpYF~N~vLtKey~l~~~~~~~ 188 (359)
T 3fs3_A 109 PNLPEFWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFYFATNPFFSNSVLTKTYHMKCVDCDN 188 (359)
T ss_dssp TTSTTHHHHHHHTSHHHHTTCCHHHHHHHTTEEEEEEEECC-------CEEEEEEECSCSSBCCSEEEEEEEEC------
T ss_pred CCCCcHHHHHHHhchHHHHhccHhHHHHHhhcceeEEEEeccCCCCCCceEEEEEeCCCCcccCCEEEEEEEEeccCCCC
Confidence 49999999999999999999999999999999999999863 3469999999999999999999999999853 3
Q ss_pred CeeeeeeeeeeeEecCCCCccccc---------------------ccceeeccCCCCCCCCCC
Q 032992 85 DIVLEEAIGTVIHWYPGQCWIEKA---------------------ERSFFNFFEPLEVPTDVE 126 (129)
Q Consensus 85 ~~~~~~~~~t~I~Wk~gk~~t~~~---------------------~~SFF~~F~~~~~p~~~~ 126 (129)
+|++..+++|+|+||+|||+|++. ..|||+||++|.+|++++
T Consensus 189 dp~~~~se~t~I~WK~GKdlT~k~~~kKqr~K~t~~~R~v~k~~~~eSFFnfFspp~~p~~de 251 (359)
T 3fs3_A 189 EPVLLHTEATVIDWYDNKNILKKNVVKKQHNKNSREVKTVQQTVNRDSFFHFFTSHKVPNSNV 251 (359)
T ss_dssp --CEEEEEECCCCBCTTCCTTCC----------------------CCCGGGGSCCBCC-----
T ss_pred CcccccceeeeeeEeCCCccchhhhhhhccccCCCCceeeeccCCCCCceeeCCCCCCCCccc
Confidence 566667999999999999999652 279999999999998765
No 3
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}
Probab=100.00 E-value=4.7e-39 Score=243.84 Aligned_cols=117 Identities=21% Similarity=0.380 Sum_probs=100.6
Q ss_pred ccccccCCCCchHHHHHhcChhhhhhhccCchhHhccccceEEEEeCCC-CceEEEEEeCC--CCCccCcEEEEEEEecc
Q 032992 6 DKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDS-EGFKLEFTFGP--NPYFKNSVLEKTYRMID 82 (129)
Q Consensus 6 ~~~~~i~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~v~~~~d~-~~f~i~F~F~~--NpyF~N~~L~K~~~~~~ 82 (129)
.|+++|++||+||++||+|||+++.++ ++|+++|+||+||+|++..++ +||+|+|+|++ ||||+|++|+|+|++..
T Consensus 40 kR~~iI~~IP~FW~t~l~n~~~ls~i~-~~De~~L~~L~di~v~~~~~~~~gf~i~F~F~~n~N~yF~N~vLtK~y~~~~ 118 (193)
T 3kyp_A 40 KRDEIIQKIPGFWANTLRKHPALSDIV-PEDIDILNHLVKLDLKDNMDNNGSYKITFIFGEKAKEFMEPLTLVKHVTFDN 118 (193)
T ss_dssp HHHHHHHTSTTTTHHHHTTSSSSTTSS-CHHHHTTCCCCEECCBCCSSSSCCCEEEEECSCCSSCSCSCEEEECCCCCC-
T ss_pred HHHHHhcCCccHHHHHHHcCchHHHHH-HhhHHHHcCcceEEEEEccCCCCceEEEEEEcCCCCccccCceEEEEEEEcC
Confidence 478899999999999999999999865 789999999999999987555 59999999998 89999999999999988
Q ss_pred CCCeeeeeeeeeeeEecCCCCccccc------------ccceeeccCCCCCCCCCC
Q 032992 83 ETDIVLEEAIGTVIHWYPGQCWIEKA------------ERSFFNFFEPLEVPTDVE 126 (129)
Q Consensus 83 ~~~~~~~~~~~t~I~Wk~gk~~t~~~------------~~SFF~~F~~~~~p~~~~ 126 (129)
+|.++ +++|+|+||+|+|+|++. ..|||+||+++++|++++
T Consensus 119 ~g~~~---~~~t~I~Wk~gk~~t~~~~~kr~~~~~~~~~~SFF~wF~~~~~~~~~e 171 (193)
T 3kyp_A 119 NQEKV---VECTRIKWKEGKNPIAAVTHNRSDLDNEIPKWSIFEWFTTDELQDKPD 171 (193)
T ss_dssp ---CC---CCCCCCCCCSSCCCCC--------------CCCTTTTCCSSCCTTTTC
T ss_pred CCCee---eccceeeeecCCCcchhhhhccccccccCCcchHhhhcCCCCcCCchH
Confidence 77654 689999999999998642 279999999999998765
No 4
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=100.00 E-value=1.5e-37 Score=257.99 Aligned_cols=118 Identities=36% Similarity=0.648 Sum_probs=104.6
Q ss_pred cccCCCCchHHHHHhcChhhhhhhccCchhHhccccceEEEEeCC-CCceEEEEEe--CCCCCccCcEEEEEEEeccC--
Q 032992 9 TKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRIND-SEGFKLEFTF--GPNPYFKNSVLEKTYRMIDE-- 83 (129)
Q Consensus 9 ~~i~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~v~~~~d-~~~f~i~F~F--~~NpyF~N~~L~K~~~~~~~-- 83 (129)
+.+++||+||++||+||+.|+.+|+++|++||+||+||+|++..+ ..||+|+|+| .+||||+|++|||+|++..+
T Consensus 180 ~~~kgIP~FWltalkN~~~lse~I~e~De~iLk~L~DI~Ve~~~d~~~gF~L~F~F~~~~NpYF~N~vLtKtY~~~~e~~ 259 (417)
T 2ayu_A 180 EQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSANPFFTNDILCKTYFYQKELG 259 (417)
T ss_dssp -CCSSCTTHHHHHHHTSTTGGGTCCHHHHTGGGGEEEEECCBCCSSSCEEEEEEEECTTTCSSBCCSEEEEEEEEESSCC
T ss_pred ccccCCccHHHHHHHcChHHHHhhhhhhHHHHhhccceEEEEccCCCcceEEEEEeCCCCCccccCCeEEEEEEEeccCC
Confidence 346999999999999999999999999999999999999999876 4599999999 99999999999999999854
Q ss_pred --CCeeeeeeeeeeeEecC-CCCccccc---------------------ccceeeccCCCCCCCCCC
Q 032992 84 --TDIVLEEAIGTVIHWYP-GQCWIEKA---------------------ERSFFNFFEPLEVPTDVE 126 (129)
Q Consensus 84 --~~~~~~~~~~t~I~Wk~-gk~~t~~~---------------------~~SFF~~F~~~~~p~~~~ 126 (129)
|..++..+++|+|+||+ |||||++. ..|||+||+++.+|+.++
T Consensus 260 ~~g~~~~~~~egt~I~WK~~GknlT~k~~kkKqr~K~~~~~R~v~k~v~~~SFFnfFspp~~p~~de 326 (417)
T 2ayu_A 260 YSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPIESFFNFFDPPKIQNEDQ 326 (417)
T ss_dssp SSSSCEEEEEEECCCCBSCTTTCTTEEEEECCC---------CCEEEEECCCGGGGGSCSCSCCCTT
T ss_pred CCCCcccccccCcceeeecCCCCcchhhhhhcccccCCCcccccccCCCCCCceeecCCCCCCCccc
Confidence 34444578999999999 99998642 169999999999998863
No 5
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=100.00 E-value=2.4e-37 Score=244.10 Aligned_cols=119 Identities=16% Similarity=0.270 Sum_probs=102.7
Q ss_pred ccccccCCCCchHHHHHhcChhhhhhhccCchhHhccccceEEEEe------CCCCceEEEEEeCC-CCCccCcEEEEEE
Q 032992 6 DKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRI------NDSEGFKLEFTFGP-NPYFKNSVLEKTY 78 (129)
Q Consensus 6 ~~~~~i~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~v~~~------~d~~~f~i~F~F~~-NpyF~N~~L~K~~ 78 (129)
.|+++|++||+||++||+||+.|+.+|+++|++||+||+||+|+++ ++++||+|+|+|++ ||||+|++|+|+|
T Consensus 46 kR~eII~~IP~FWltal~n~~~l~~~I~e~De~iL~~L~dI~v~~~~~~~~~~~~~gf~i~F~F~~~NpyF~N~vLtK~y 125 (264)
T 2zd7_A 46 KRDAYIDEIAEFWKIVLSQHVSFANYIRASDFKYIDTIDKIKVEWLALESEMYDTRDFSITFHFHGIEGDFKEQQVTKVF 125 (264)
T ss_dssp HHHHHHTTCTTHHHHHHHHSTTGGGGSCGGGHHHHTTEEEEEEEEGGGTCTTSCTTCEEEEEEECCBTTTBCCEEEEEEE
T ss_pred HHHHHHhcchhHHHHHHHcChHHHhhcCHhhHHHHHhcCceEEEEecccccCCCCCceEEEEEeCCCCCCccCCeEEEEE
Confidence 5789999999999999999999999999999999999999999996 45679999999999 9999999999999
Q ss_pred EeccC--C-CeeeeeeeeeeeEecCCCCc-cccc----------------ccceeeccCCCCCCCC
Q 032992 79 RMIDE--T-DIVLEEAIGTVIHWYPGQCW-IEKA----------------ERSFFNFFEPLEVPTD 124 (129)
Q Consensus 79 ~~~~~--~-~~~~~~~~~t~I~Wk~gk~~-t~~~----------------~~SFF~~F~~~~~p~~ 124 (129)
++..+ | ++.+.++++|+|+||+|+++ +.+. ..|||+||+++..|+.
T Consensus 126 ~~~~~~dg~~~~~~~s~~t~I~WK~g~~~~~~~~~~kk~~~~~~~~~r~~~~SFF~fF~~~~~~~~ 191 (264)
T 2zd7_A 126 QIKKGKDDQEDGILTSEPVPIEWPQSYDSINPDLIKDKRSPEGKKKYRQGMKTIFGWFRWTGLKPG 191 (264)
T ss_dssp EEECCSSSCCCCEEEECCCCCCCCGGGGGGCTTTCSCSSSHHHHHHHHHHHTSHHHHTTCCSSSTT
T ss_pred EecccCCCCCCCceeEeecccccCCCccccchhhhhhccccccccccCCCCCCcceecCCCCCCcc
Confidence 99864 3 23245899999999997654 3221 2699999999987754
No 6
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C
Probab=23.04 E-value=18 Score=27.08 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=1.0
Q ss_pred eeeeeeeEecCCCCccc
Q 032992 90 EAIGTVIHWYPGQCWIE 106 (129)
Q Consensus 90 ~~~~t~I~Wk~gk~~t~ 106 (129)
...+|+|+||+|.++-.
T Consensus 224 ~~~~cp~~W~~g~~~~~ 240 (254)
T 3tjj_A 224 HGEVAPAGWKPGSETII 240 (254)
T ss_dssp HC---------------
T ss_pred cCccccCCCCCCCceec
Confidence 36889999999987543
No 7
>3dby_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.10A {Bacillus cereus} SCOP: a.29.13.1 a.29.13.1
Probab=19.78 E-value=39 Score=26.14 Aligned_cols=25 Identities=16% Similarity=0.575 Sum_probs=19.3
Q ss_pred chHHHHHhcChh-hhhhhccCchhHh
Q 032992 16 DFWFIAMESHHE-LRQNIVRHDQGAL 40 (129)
Q Consensus 16 ~FW~~vl~n~~~-l~~~i~~~D~~iL 40 (129)
.||.++|+-|.. +...+++.|.+..
T Consensus 16 ~FWlrIMkEHA~Fi~~~L~p~e~~li 41 (269)
T 3dby_A 16 QFWLKVLTDHAQFLLDALAPKEKEDI 41 (269)
T ss_dssp HHHHHHHHHHHHHHHHHBCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 599999999987 4566677777654
No 8
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=19.48 E-value=36 Score=23.06 Aligned_cols=17 Identities=41% Similarity=0.614 Sum_probs=13.6
Q ss_pred eeeeeeeEecCCCCccc
Q 032992 90 EAIGTVIHWYPGQCWIE 106 (129)
Q Consensus 90 ~~~~t~I~Wk~gk~~t~ 106 (129)
.+.+|+|+|++|..+..
T Consensus 169 ~~~gc~~~~~~~~~~~~ 185 (188)
T 2cvb_A 169 PAIGCTIKWRPGNEPEV 185 (188)
T ss_dssp CCCSEECCCCTTCCCCC
T ss_pred CCCceEEEecCCCCCCc
Confidence 46789999999987654
No 9
>2oxg_Z SOXZ protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2ox5_Z 2oxh_Z*
Probab=19.23 E-value=47 Score=21.89 Aligned_cols=49 Identities=16% Similarity=0.163 Sum_probs=26.8
Q ss_pred HHhcChhhhhhhccCchhHh--ccccceEEEEeCCCCceEEEEEe--CCCCCcc
Q 032992 21 AMESHHELRQNIVRHDQGAL--KYLTDIKWCRINDSEGFKLEFTF--GPNPYFK 70 (129)
Q Consensus 21 vl~n~~~l~~~i~~~D~~iL--~~L~dI~v~~~~d~~~f~i~F~F--~~NpyF~ 70 (129)
+|..||+-+-+-.+.+-.+. .|++.|+|... +..-+++.+.- .+||||+
T Consensus 24 ~~I~HPMetGl~~d~~g~~IPa~~I~~v~~~~n-g~~v~~~~~~~~iS~NP~~~ 76 (108)
T 2oxg_Z 24 ALISHKMESGQRKDADGKLIPRSIINRFTCELN-GVNVVDVAIDPAVSTNPYFE 76 (108)
T ss_dssp EEECCCCBCSCCBCTTSCBCCCBCEEEEEEEET-TEEEEEEEECTTBCSSCEEE
T ss_pred EEeECCCccccccCcCCCccchHheEEEEEEEC-CEEEEEEEeCCccccCCeEE
Confidence 45667664433322221111 68999999743 22345555544 4588885
No 10
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Probab=18.73 E-value=23 Score=24.58 Aligned_cols=15 Identities=13% Similarity=0.262 Sum_probs=12.5
Q ss_pred eeeeeeEecCCCCcc
Q 032992 91 AIGTVIHWYPGQCWI 105 (129)
Q Consensus 91 ~~~t~I~Wk~gk~~t 105 (129)
..+||++|++|++.-
T Consensus 162 ~~~~p~~w~~~~~~~ 176 (186)
T 1n8j_A 162 GEVCPAKWKEGEATL 176 (186)
T ss_dssp TCBBCTTCCTTSCCB
T ss_pred CCccCCCCCCCCccc
Confidence 579999999997743
Done!