Query 032994
Match_columns 129
No_of_seqs 111 out of 1032
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 13:45:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032994.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032994hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1i6ua_ d.140.1.1 (A:) Ribosom 100.0 4.6E-47 3.4E-51 270.1 12.5 126 4-129 4-129 (129)
2 d1seia_ d.140.1.1 (A:) Ribosom 100.0 5.9E-47 4.3E-51 269.5 12.5 119 3-129 3-130 (130)
3 d1an7a_ d.140.1.1 (A:) Ribosom 100.0 3.2E-44 2.3E-48 256.7 11.9 120 3-129 1-136 (136)
4 d2gy9h1 d.140.1.1 (H:3-128) Ri 100.0 1.8E-44 1.3E-48 255.6 10.1 116 4-128 2-126 (126)
5 d1c4oa2 c.37.1.19 (A:410-583) 38.0 22 0.0016 23.7 4.5 46 4-49 15-60 (174)
6 d1t5la2 c.37.1.19 (A:415-595) 28.6 42 0.003 22.1 4.7 46 4-49 15-60 (181)
7 d2hgca1 a.4.5.77 (A:5-82) Unch 26.7 7.5 0.00055 22.4 0.3 20 35-54 31-50 (78)
8 d2esha1 a.4.5.61 (A:4-117) Hyp 25.8 19 0.0014 22.0 2.3 25 28-52 44-68 (114)
9 d1a6sa_ a.61.1.4 (A:) GAG poly 25.3 17 0.0013 21.9 1.9 22 28-49 21-42 (87)
10 d2cfxa1 a.4.5.32 (A:1-63) Tran 24.9 23 0.0017 19.4 2.3 24 28-52 32-55 (63)
11 d1xmaa_ a.4.5.61 (A:) Predicte 21.3 35 0.0026 20.3 2.9 27 28-54 40-66 (103)
12 d2a61a1 a.4.5.28 (A:5-143) Tra 20.8 51 0.0037 20.0 3.8 32 32-65 60-91 (139)
13 d1vmia_ c.77.1.5 (A:) Ethanola 20.6 75 0.0055 22.8 5.2 45 4-49 2-49 (329)
No 1
>d1i6ua_ d.140.1.1 (A:) Ribosomal protein S8 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=100.00 E-value=4.6e-47 Score=270.13 Aligned_cols=126 Identities=37% Similarity=0.682 Sum_probs=113.9
Q ss_pred cHHHHHHHHhhhhhhcCCCeEEEecChhHHHHHHHhhccCCcccceEEEcCCCcceEEEEEccccCCCCccccceecccc
Q 032994 4 RILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAR 83 (129)
Q Consensus 4 d~iad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eG~I~~~~~~~~~~~~~i~I~Lky~~~k~~~IspRvy~~~~ 83 (129)
||||||||+||||++|+|.+|.+.|+||++.+||++|++||||++|++.++++++.+.|.|+|+.+++|+|+|+..++..
T Consensus 4 D~iaD~ltrIrNA~~~~~~~V~i~P~Skl~~~Il~iL~~eGyI~~~~~~~~~~~~~i~i~L~~~~~~~~~I~~~~~vskp 83 (129)
T d1i6ua_ 4 DPLANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNGYIGEFEFIEDGRAGIFKVELIGKINKCGAIKPRFPVKKF 83 (129)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTTSSCCEEEECCSSSCEEEEECCSCCSCEEECSSCCEECTT
T ss_pred cHHHHHHHHHHHHHHcCCCEEEEecchHHHHHHHHHHHHHHHHHHhhhccccCCCceeEEEecccccCccccceEeeecc
Confidence 99999999999999999999996699999999999999999999999988888899999999998888999875555555
Q ss_pred chhhhhcccCCCCcceEEEEECCCCcccHHHHHhcCCCeEEEEEEC
Q 032994 84 EIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 129 (129)
Q Consensus 84 ~l~~~~~~~~p~~~~Gi~IlSTskGimt~~eA~~~~vGGevL~~v~ 129 (129)
....+.+...|.+|+|++|||||+|||||+||+++++|||+||+||
T Consensus 84 ~~r~~~~~~~~~~glGi~IlSTSkGimt~~eAr~~~vGGEiLc~V~ 129 (129)
T d1i6ua_ 84 GYEKFEKRYLPARDFGILIVSTTQGVMSHEEAKKRGLGGRLLAYVY 129 (129)
T ss_dssp CCHHHHHHHCSSTTCCEEEEEETTEEEEHHHHHHTTCCEEEEEEEC
T ss_pred cccchhhccCCCCCCeEEEEECCccccCHHHHHHcCCCceEEEEEC
Confidence 5555555556667999999999999999999999999999999999
No 2
>d1seia_ d.140.1.1 (A:) Ribosomal protein S8 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=100.00 E-value=5.9e-47 Score=269.45 Aligned_cols=119 Identities=29% Similarity=0.469 Sum_probs=112.5
Q ss_pred CcHHHHHHHHhhhhhhcCCCeEEEecChhHHHHHHHhhccCCcccceEEEcCCCcceEEEEEccccCCCCccc-------
Q 032994 3 RRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLT------- 75 (129)
Q Consensus 3 ~d~iad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eG~I~~~~~~~~~~~~~i~I~Lky~~~k~~~Is------- 75 (129)
+||||||||+||||++++|++|.+ |+||++.+||++|++||||++|++.++++.+.++|.|||..++ |+|+
T Consensus 3 ~D~iaD~lt~IrNA~~a~k~~V~i-p~Skl~~~il~vL~~eGyI~~f~~~~~~~~~~i~v~Lk~~~~~-~~i~~~~~vSk 80 (130)
T d1seia_ 3 TDPIADMLTAIRNANMVRHEKLEV-PASKIKREIAEILKREGFIRDYEYIEDNKQGILRIFLKYGPNE-RVITGLKRISK 80 (130)
T ss_dssp SHHHHHHHHHHHHHHHTTCSEEEE-ECCHHHHHHHHHHHHTTSEEEEEEEESSSCEEEEEEECBSSSS-BSCCCEEECCB
T ss_pred cchHHHHHHHHHHHHHcCCCEEEe-cCcHHHHHHHHHHHHhcccceeEEeeccCCceEEEEecccCCc-cccccceeccc
Confidence 499999999999999999999998 9999999999999999999999999988889999999998876 4554
Q ss_pred c--ceeccccchhhhhcccCCCCcceEEEEECCCCcccHHHHHhcCCCeEEEEEEC
Q 032994 76 Y--RQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 129 (129)
Q Consensus 76 p--Rvy~~~~~l~~~~~~~~p~~~~Gi~IlSTskGimt~~eA~~~~vGGevL~~v~ 129 (129)
| |+|.+.++|+++.+ |+|++|||||+|+|||+||+++++|||+||+||
T Consensus 81 pg~r~y~~~~~l~~~~~------g~G~~IvSTskGimt~~eA~~~~iGGell~~Vf 130 (130)
T d1seia_ 81 PGLRVYVKAHEVPRVLN------GLGIAILSTSQGVLTDKEARQKGTGGEIIAYVI 130 (130)
T ss_dssp TTBCCEECGGGCCCCCT------TSCEEEEEETTEEEEHHHHHHHTCCEEEEEEEC
T ss_pred CCeEEEcchhhhhhhhh------hceEEEEECCCCeeeHHHHHHhCCCcEEEEEEC
Confidence 5 99999999999987 799999999999999999999999999999997
No 3
>d1an7a_ d.140.1.1 (A:) Ribosomal protein S8 {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=3.2e-44 Score=256.66 Aligned_cols=120 Identities=26% Similarity=0.325 Sum_probs=109.7
Q ss_pred CcHHHHHHHHhhhhhhcCCCeEEEecChhHHHHHHHhhccCCcccceEEEcCCCcceEEEEEccccCC-------CCccc
Q 032994 3 RRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVND-------CRGLT 75 (129)
Q Consensus 3 ~d~iad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eG~I~~~~~~~~~~~~~i~I~Lky~~~k-------~~~Is 75 (129)
+|||||||++||||++++|.+|.+ |+||++.+||++|++||||++|++.+++....+.+.++|..+. .|+|+
T Consensus 1 tD~iaD~lt~IrNA~~~~k~~v~i-p~Skl~~~il~iL~~eGyI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 79 (136)
T d1an7a_ 1 TDPIADMLTRIRNATRVYKESTDV-PASRFKEEILRILAREGFIKGYERVDVDGKPYLRVYLKYGPRRQGPDPRPEQVIH 79 (136)
T ss_dssp CCHHHHHHHHHHHHHTTTCSEEEE-ECCHHHHHHHHHHHHTTSEEEEEEEEETTEEEEEEEECEEEECSSSCCSEEESCC
T ss_pred CCcHHHHHHHHHhHHHcCCCEEEe-cccHHHHHHHHHHHHCCcccceEEeccCCcceeeeeeehhhhcccCCCCCCcccc
Confidence 499999999999999999999998 9999999999999999999999999887788888888875432 23343
Q ss_pred -------c--ceeccccchhhhhcccCCCCcceEEEEECCCCcccHHHHHhcCCCeEEEEEEC
Q 032994 76 -------Y--RQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 129 (129)
Q Consensus 76 -------p--Rvy~~~~~l~~~~~~~~p~~~~Gi~IlSTskGimt~~eA~~~~vGGevL~~v~ 129 (129)
| |+|++.++|+++.+ |+|++|||||+|||||+||+++++|||+||+||
T Consensus 80 ~i~~vSkP~~Rvy~~~~~l~~~~~------g~G~~IlSTskGimt~~eA~~~~iGGe~L~~v~ 136 (136)
T d1an7a_ 80 HIRRISKPGRRVYVGVKEIPRVRR------GLGIAILSTSKGVLTDREARKLGVGGELICEVW 136 (136)
T ss_dssp CEEECSBTTBCCEECGGGCCCGGG------GTSEEEEEETTEEEEHHHHHHHTCCEEEEEEEC
T ss_pred eeEEeccCCcccccCcchhhhccC------CeEEEEEeCCCCeeeHHHHHHcCCCCEEEEEEC
Confidence 5 99999999999997 799999999999999999999999999999999
No 4
>d2gy9h1 d.140.1.1 (H:3-128) Ribosomal protein S8 {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=1.8e-44 Score=255.58 Aligned_cols=116 Identities=23% Similarity=0.371 Sum_probs=108.5
Q ss_pred cHHHHHHHHhhhhhhcCCCeEEEecChhHHHHHHHhhccCCcccceEEEcCCCcceEEEEEccccCCCCccc-------c
Q 032994 4 RILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLT-------Y 76 (129)
Q Consensus 4 d~iad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eG~I~~~~~~~~~~~~~i~I~Lky~~~k~~~Is-------p 76 (129)
|||||+|++||||++++|.+|.+ |+|+++.+||++|++||||.+|++.+++ +..++|.|||+.++ |+|+ |
T Consensus 2 D~iaD~l~~I~NA~~~~k~~v~i-p~Skl~~~il~iL~~eGyI~~f~~~~~~-k~~i~i~Lky~~~k-~vI~~~~~vSkp 78 (126)
T d2gy9h1 2 DPIADMLTRIRNGQAANKAAVTM-PSSKLKVAIANVLKEEGFIEDFKVEGDT-KPELELTLKYFQGK-AVVESIQRVSRP 78 (126)
T ss_dssp CHHHHHHHHHHHHHHTTCSEECC-BCCHHHHHHHHHHHHHTSEEEEEEECSS-SCEEEEEECCCSSS-CSCSCCEECSCS
T ss_pred CcHHHHHHHhHhHHHcCCCEEEe-eCcHHHHHHHHHHHhcCcccccEEecCC-CceEEEEEeccCCC-EEEecceEeecC
Confidence 99999999999999999999997 9999999999999999999999987654 57899999998765 6665 6
Q ss_pred --ceeccccchhhhhcccCCCCcceEEEEECCCCcccHHHHHhcCCCeEEEEEE
Q 032994 77 --RQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYF 128 (129)
Q Consensus 77 --Rvy~~~~~l~~~~~~~~p~~~~Gi~IlSTskGimt~~eA~~~~vGGevL~~v 128 (129)
|+|++.++|+++.+ |+|++|||||+|||||+||+++++|||+||+|
T Consensus 79 ~~r~y~~~~~l~~~~~------g~G~~IlSTskGimt~~eA~~~~vGGelL~~V 126 (126)
T d2gy9h1 79 GLRIYKRKDELPKVMA------GLGIAVVSTSKGVMTDRAARQAGLGGEIICYV 126 (126)
T ss_dssp SSCCBCCTTTCCCGGG------GTSCEEEEETTEEEEHHHHHHHTCCCEEEEEC
T ss_pred CcccccchhhhhhccC------ceeEEEecCCCceEEHHHHHHhCCCcEEEEEC
Confidence 99999999999997 79999999999999999999999999999997
No 5
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Probab=38.01 E-value=22 Score=23.74 Aligned_cols=46 Identities=13% Similarity=0.185 Sum_probs=36.0
Q ss_pred cHHHHHHHHhhhhhhcCCCeEEEecChhHHHHHHHhhccCCcccce
Q 032994 4 RILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDF 49 (129)
Q Consensus 4 d~iad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eG~I~~~ 49 (129)
..+-|++..|+.-...+.+.+.+.+.-+.+..+...|.++|+=..+
T Consensus 15 ~qv~dll~~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~ 60 (174)
T d1c4oa2 15 NQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARY 60 (174)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEEcchhHHHHHHHHHHhcCCceEE
Confidence 4567899998877655555554459999999999999999997655
No 6
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}
Probab=28.59 E-value=42 Score=22.07 Aligned_cols=46 Identities=13% Similarity=0.188 Sum_probs=34.1
Q ss_pred cHHHHHHHHhhhhhhcCCCeEEEecChhHHHHHHHhhccCCcccce
Q 032994 4 RILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDF 49 (129)
Q Consensus 4 d~iad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eG~I~~~ 49 (129)
+.+-|++..|+.-...+.+.+.+.+.-.....+...|.+.|+=..+
T Consensus 15 ~qvd~ll~~i~~~~~~~~~~iif~~~~~~~~~~~~~l~~~g~~~~~ 60 (181)
T d1t5la2 15 GQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAY 60 (181)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHTTTCCEEE
T ss_pred CcHHHHHHHHHHHHhcCCeEEEEeehhhhhHHHHHHHHhCCcceeE
Confidence 4567889999887655555554447777889999999999986655
No 7
>d2hgca1 a.4.5.77 (A:5-82) Uncharacterized protein YjcQ {Bacillus subtilis [TaxId: 1423]}
Probab=26.73 E-value=7.5 Score=22.39 Aligned_cols=20 Identities=30% Similarity=0.487 Sum_probs=15.8
Q ss_pred HHHHhhccCCcccceEEEcC
Q 032994 35 SFLNIMKYRGYIKDFQLYDP 54 (129)
Q Consensus 35 ~il~iL~~eG~I~~~~~~~~ 54 (129)
.-.+.|++||||-++...++
T Consensus 31 davnflkregyiigvhysdd 50 (78)
T d2hgca1 31 DAVNFLKREGYIIGVHYSDD 50 (78)
T ss_dssp HHHHHHHHHTSEECCEESSS
T ss_pred HHHHHHHhcCeEEEEeccCC
Confidence 44678999999999977554
No 8
>d2esha1 a.4.5.61 (A:4-117) Hypothetical protein TM0937 {Thermotoga maritima [TaxId: 2336]}
Probab=25.77 E-value=19 Score=22.03 Aligned_cols=25 Identities=8% Similarity=-0.063 Sum_probs=19.6
Q ss_pred cChhHHHHHHHhhccCCcccceEEE
Q 032994 28 PISTVMSSFLNIMKYRGYIKDFQLY 52 (129)
Q Consensus 28 p~Sk~~~~il~iL~~eG~I~~~~~~ 52 (129)
+.......+|+-|.++|||.+....
T Consensus 44 ~~~gtiY~~L~rLe~~G~I~~~~~~ 68 (114)
T d2esha1 44 GHMGNIYRVLADLEESGFLSTEWDT 68 (114)
T ss_dssp CCCCCHHHHHHHHHHTTSEEEEEEC
T ss_pred CCCCcHHHHHHHHHHCCCeEEEeec
Confidence 3445678999999999999976443
No 9
>d1a6sa_ a.61.1.4 (A:) GAG polyprotein M-domain {Rous sarcoma virus [TaxId: 11886]}
Probab=25.27 E-value=17 Score=21.87 Aligned_cols=22 Identities=14% Similarity=0.375 Sum_probs=20.2
Q ss_pred cChhHHHHHHHhhccCCcccce
Q 032994 28 PISTVMSSFLNIMKYRGYIKDF 49 (129)
Q Consensus 28 p~Sk~~~~il~iL~~eG~I~~~ 49 (129)
|+.|-+-+++..|.+||.+.+=
T Consensus 21 pskKei~a~ls~L~~eG~l~sP 42 (87)
T d1a6sa_ 21 PSKKEIGAMLSLLQKEGLLMSP 42 (87)
T ss_dssp SCSSHHHHHHHTGGGTTCTTCG
T ss_pred CcHHHHHHHHHHHHHccCcCCc
Confidence 8999999999999999999864
No 10
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=24.86 E-value=23 Score=19.39 Aligned_cols=24 Identities=21% Similarity=0.283 Sum_probs=16.6
Q ss_pred cChhHHHHHHHhhccCCcccceEEE
Q 032994 28 PISTVMSSFLNIMKYRGYIKDFQLY 52 (129)
Q Consensus 28 p~Sk~~~~il~iL~~eG~I~~~~~~ 52 (129)
+.+.+...+ +-|.++|+|++|...
T Consensus 32 s~~tv~~Ri-~~L~~~giI~~~~~~ 55 (63)
T d2cfxa1 32 SPPSVTERV-RQLESFGIIKQYTLE 55 (63)
T ss_dssp CHHHHHHHH-HHHHHTTSEEEEEEE
T ss_pred CHHHHHHHH-HHHHHCCCeeeEEEE
Confidence 444444444 449999999999754
No 11
>d1xmaa_ a.4.5.61 (A:) Predicted transcriptional regulator {Clostridium thermocellum [TaxId: 1515]}
Probab=21.30 E-value=35 Score=20.32 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=21.4
Q ss_pred cChhHHHHHHHhhccCCcccceEEEcC
Q 032994 28 PISTVMSSFLNIMKYRGYIKDFQLYDP 54 (129)
Q Consensus 28 p~Sk~~~~il~iL~~eG~I~~~~~~~~ 54 (129)
++.......|+-|.++|||.+....++
T Consensus 40 is~gslY~~L~rLe~~GlI~~~~~~~~ 66 (103)
T d1xmaa_ 40 IKETTLYSAFARLEKNGYIKSYYGEET 66 (103)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEEEEEC
T ss_pred CCCCchHHHHHHHHHCCCeEEEeeccC
Confidence 466788899999999999997655433
No 12
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=20.84 E-value=51 Score=19.97 Aligned_cols=32 Identities=9% Similarity=0.192 Sum_probs=20.9
Q ss_pred HHHHHHHhhccCCcccceEEEcCCCcceEEEEEc
Q 032994 32 VMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELL 65 (129)
Q Consensus 32 ~~~~il~iL~~eG~I~~~~~~~~~~~~~i~I~Lk 65 (129)
..-.+++-|.+.|||....- ++.++...|.|=
T Consensus 60 tvs~~l~~L~~~gli~r~~~--~~D~R~~~i~LT 91 (139)
T d2a61a1 60 TVTGLVKRLEADGYLTRTPD--PADRRAYFLVIT 91 (139)
T ss_dssp HHHHHHHHHHHTTSEEEEEE--TTEEEEEEEEEC
T ss_pred cchHHHHHHHhcCeeeeeec--cCCCCeEEEEEC
Confidence 35578888999999985533 333454455554
No 13
>d1vmia_ c.77.1.5 (A:) Ethanolamine utilization protein EutD {Escherichia coli [TaxId: 562]}
Probab=20.61 E-value=75 Score=22.77 Aligned_cols=45 Identities=13% Similarity=0.116 Sum_probs=34.7
Q ss_pred cH-HHHHHHHhhhhhhcCCCeEEEecC--hhHHHHHHHhhccCCcccce
Q 032994 4 RI-LNDALRAIVNAERRGKATVELQPI--STVMSSFLNIMKYRGYIKDF 49 (129)
Q Consensus 4 d~-iad~lt~IrNa~~a~~~~v~i~p~--Sk~~~~il~iL~~eG~I~~~ 49 (129)
|| +.-++.++++..+...+.|.+ |. ..-.++=+..+.+||++.=+
T Consensus 2 ~~~~~~~~~~~~~~a~~~pkrIvf-~Eged~rvl~Aa~~~~~egi~~pI 49 (329)
T d1vmia_ 2 DPALRAIIERCRELALRAPARVVF-PDALDQRVLKAAQYLHQQGLATPI 49 (329)
T ss_dssp CHHHHHHHHHHHGGGGSCCCEEEE-SCCSSHHHHHHHHHHHHTTSCEEE
T ss_pred ChHHHHHHHHHHHHHHhCCCEEEE-cCCCCHHHHHHHHHHHHCCCeEEE
Confidence 45 678899999988888888887 84 45666677779999987544
Done!