RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 032994
(129 letters)
>gnl|CDD|215075 PLN00146, PLN00146, 40S ribosomal protein S15a; Provisional.
Length = 130
Score = 226 bits (577), Expect = 5e-78
Identities = 68/129 (52%), Positives = 96/129 (74%)
Query: 1 MGRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKI 60
+ R +LNDAL+ + NAE+RGK V ++P S V+ FL +M+ GYI +F++ D HR GKI
Sbjct: 2 VRRSVLNDALKTMYNAEKRGKRQVLIRPSSKVVIKFLKVMQKHGYIGEFEVVDDHRSGKI 61
Query: 61 KVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNV 120
VEL GR+N C ++ R DVK +EIE +T LP+RQ+GY+V+TT G++DHEEA R+NV
Sbjct: 62 VVELNGRLNKCGVISPRFDVKVKEIEAWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNV 121
Query: 121 GGQVLGYFH 129
GG+VLG+F+
Sbjct: 122 GGKVLGFFY 130
>gnl|CDD|185487 PTZ00158, PTZ00158, 40S ribosomal protein S15A; Provisional.
Length = 130
Score = 152 bits (387), Expect = 3e-49
Identities = 61/125 (48%), Positives = 89/125 (71%)
Query: 5 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVEL 64
+L D LR+IVNAE++GK V ++P S V+ FL +M+ GYI +F++ D HR GKI V L
Sbjct: 6 VLADCLRSIVNAEKQGKRQVLIRPSSKVVVKFLQVMQKHGYIGEFEIVDDHRSGKIVVNL 65
Query: 65 LGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQV 124
GR+N C ++ R DV E E + + LP+RQ+G+VV+TT G++DHEEA RR+ GG++
Sbjct: 66 NGRLNKCGVISPRFDVTLGEFEKWANNILPSRQFGHVVLTTSYGIMDHEEARRRHTGGKI 125
Query: 125 LGYFH 129
LG+F+
Sbjct: 126 LGFFY 130
>gnl|CDD|179721 PRK04034, rps8p, 30S ribosomal protein S8P; Reviewed.
Length = 130
Score = 129 bits (326), Expect = 8e-40
Identities = 50/127 (39%), Positives = 74/127 (58%)
Query: 1 MGRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKI 60
+ L +AL I NAE GK V ++P S ++ + L +M+ GYI +F+ D R GK
Sbjct: 2 VLLDPLANALSTIKNAEMVGKKEVIIKPASKLIGNVLRVMQDEGYIGEFEYIDDGRAGKF 61
Query: 61 KVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNV 120
KVELLGR+N C + R VK E E + LP R +G ++++T GV+ H+EA + +
Sbjct: 62 KVELLGRINKCGAIKPRYPVKYDEFEKWEKRYLPARDFGILIVSTSKGVMSHKEAREKGI 121
Query: 121 GGQVLGY 127
GG +L Y
Sbjct: 122 GGVLLAY 128
>gnl|CDD|223174 COG0096, RpsH, Ribosomal protein S8 [Translation, ribosomal
structure and biogenesis].
Length = 132
Score = 109 bits (276), Expect = 3e-32
Identities = 45/127 (35%), Positives = 68/127 (53%), Gaps = 4/127 (3%)
Query: 5 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVEL 64
L D L I NAER K V + P S + + L ++K GYIKDF++ D R GK++V+L
Sbjct: 6 PLADMLTRIRNAERAKKEVVSM-PASKLKGAILKVLKKEGYIKDFEVIDDGRKGKLRVQL 64
Query: 65 LGRVNDCRGLTYRQDVKAREIEGYTVHA-LPTRQWGY--VVITTPDGVLDHEEALRRNVG 121
R+N C ++ + V + Y LP G +++T GV+ +EA ++ VG
Sbjct: 65 KYRINGCGVISPIKRVSKPGLRVYEKKRELPAVLNGLGIAIVSTSKGVMTDKEARKKGVG 124
Query: 122 GQVLGYF 128
G+VL Y
Sbjct: 125 GEVLCYV 131
>gnl|CDD|215906 pfam00410, Ribosomal_S8, Ribosomal protein S8.
Length = 129
Score = 83.3 bits (207), Expect = 8e-22
Identities = 43/135 (31%), Positives = 62/135 (45%), Gaps = 21/135 (15%)
Query: 6 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGK-IKVEL 64
+ D L I NA+ K TV + P S + S L I+K GYIK F++ + R GK IKV L
Sbjct: 3 IADMLTRIRNAQMAKKETVLI-PASKLKISILKILKEEGYIKGFEVIEDERNGKFIKVTL 61
Query: 65 ---------LGRVNDCR--GLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHE 113
+ + GL R V +E+ G +++T GV+
Sbjct: 62 KYDKNGKPVITGIKRISKPGL--RVYVSYKELPKVL------GGLGIAILSTSKGVMTDR 113
Query: 114 EALRRNVGGQVLGYF 128
EA ++ VGG+VL Y
Sbjct: 114 EARKKGVGGEVLCYV 128
>gnl|CDD|234658 PRK00136, rpsH, 30S ribosomal protein S8; Validated.
Length = 130
Score = 57.8 bits (141), Expect = 8e-12
Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 29/135 (21%)
Query: 8 DALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVEL--- 64
D L I NA+ TV + P S + + I+K GYIKD+++ + + G +++ L
Sbjct: 8 DMLTRIRNAQMAKHETVSM-PASKLKVAIAEILKEEGYIKDYEVEEDGKQGILRITLKYG 66
Query: 65 --------LGRVNDCRGLTYRQDVKAREIE----GYTVHALPTRQWGYVVITTPDGVLDH 112
+ RV+ GL R K E+ G G +++T GV+
Sbjct: 67 EGEPVIEGIKRVSKP-GL--RVYKKKDELPKVLNGL----------GIAIVSTSKGVMTD 113
Query: 113 EEALRRNVGGQVLGY 127
EA + VGG+VL Y
Sbjct: 114 REARKAGVGGEVLCY 128
>gnl|CDD|214344 CHL00042, rps8, ribosomal protein S8.
Length = 132
Score = 30.1 bits (69), Expect = 0.16
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 1 MGRRILNDALRAIVNAERRGKATVELQPISTVMS-SFLNIMKYRGYIKDFQLYDPHRVGK 59
MG + D L I NA K TV + +T ++ + + I+ G+I++ + HR
Sbjct: 1 MGNDTIADMLTRIRNANMVKKGTVRI--PATNITENIVKILLREGFIENVR---EHRENN 55
Query: 60 IK 61
Sbjct: 56 KY 57
>gnl|CDD|185503 PTZ00183, PTZ00183, centrin; Provisional.
Length = 158
Score = 27.7 bits (62), Expect = 1.3
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 11 RAIVNAERRGKATVELQPISTVMSSFLNIMKYR-GYIKDFQLYDPHRVGKIKVELLGRV 68
+ I + ++ G ++ + +M+ L R +K F+L+D + GKI ++ L RV
Sbjct: 57 QMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRV 115
>gnl|CDD|238707 cd01419, MoaC_A, MoaC family, archaeal. Members of this family are
involved in molybdenum cofactor (Moco) biosynthesis, an
essential cofactor of a diverse group of redox enzymes.
MoaC, a small hexameric protein, converts, together with
MoaA, a guanosine derivative to the precursor Z by
inserting the carbon-8 of the purine between the 2' and
3' ribose carbon atoms, which is the first of three
phases of Moco biosynthesis.
Length = 141
Score = 25.4 bits (56), Expect = 7.2
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 4 RILNDALRAIVNAERRGKATVELQPISTVMSSFLNI 39
+ D + + K VE++ ++ V + L I
Sbjct: 75 EVEEDGIEVRCTVKTTYKTGVEMEALTGVSVALLTI 110
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.141 0.421
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,953,216
Number of extensions: 622673
Number of successful extensions: 507
Number of sequences better than 10.0: 1
Number of HSP's gapped: 502
Number of HSP's successfully gapped: 17
Length of query: 129
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 43
Effective length of database: 7,123,158
Effective search space: 306295794
Effective search space used: 306295794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.1 bits)