RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 032994
         (129 letters)



>d1i6ua_ d.140.1.1 (A:) Ribosomal protein S8 {Archaeon Methanococcus
           jannaschii [TaxId: 2190]}
          Length = 129

 Score =  108 bits (270), Expect = 4e-32
 Identities = 47/123 (38%), Positives = 72/123 (58%)

Query: 6   LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELL 65
           L +AL  I N ER GK  V ++P S ++   L +M+  GYI +F+  +  R G  KVEL+
Sbjct: 6   LANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNGYIGEFEFIEDGRAGIFKVELI 65

Query: 66  GRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVL 125
           G++N C  +  R  VK    E +    LP R +G ++++T  GV+ HEEA +R +GG++L
Sbjct: 66  GKINKCGAIKPRFPVKKFGYEKFEKRYLPARDFGILIVSTTQGVMSHEEAKKRGLGGRLL 125

Query: 126 GYF 128
            Y 
Sbjct: 126 AYV 128


>d1seia_ d.140.1.1 (A:) Ribosomal protein S8 {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 130

 Score = 85.4 bits (211), Expect = 4e-23
 Identities = 29/125 (23%), Positives = 58/125 (46%), Gaps = 5/125 (4%)

Query: 6   LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELL 65
           + D L AI NA       +E+ P S +      I+K  G+I+D++  + ++ G +++ L 
Sbjct: 6   IADMLTAIRNANMVRHEKLEV-PASKIKREIAEILKREGFIRDYEYIEDNKQGILRIFL- 63

Query: 66  GRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGY---VVITTPDGVLDHEEALRRNVGG 122
               + R +T  + +    +  Y       R        +++T  GVL  +EA ++  GG
Sbjct: 64  KYGPNERVITGLKRISKPGLRVYVKAHEVPRVLNGLGIAILSTSQGVLTDKEARQKGTGG 123

Query: 123 QVLGY 127
           +++ Y
Sbjct: 124 EIIAY 128


>d2gy9h1 d.140.1.1 (H:3-128) Ribosomal protein S8 {Escherichia coli
           [TaxId: 562]}
          Length = 126

 Score = 75.7 bits (186), Expect = 2e-19
 Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 4/124 (3%)

Query: 6   LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELL 65
           + D L  I N +   KA V + P S +  +  N++K  G+I+DF++    +  ++++ L 
Sbjct: 4   IADMLTRIRNGQAANKAAVTM-PSSKLKVAIANVLKEEGFIEDFKVEGDTK-PELELTLK 61

Query: 66  GRVNDC--RGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQ 123
                     +        R  +            G  V++T  GV+    A +  +GG+
Sbjct: 62  YFQGKAVVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGE 121

Query: 124 VLGY 127
           ++ Y
Sbjct: 122 IICY 125


>d1an7a_ d.140.1.1 (A:) Ribosomal protein S8 {Thermus thermophilus
           [TaxId: 274]}
          Length = 136

 Score = 72.7 bits (178), Expect = 3e-18
 Identities = 31/132 (23%), Positives = 49/132 (37%), Gaps = 11/132 (8%)

Query: 6   LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELL 65
           + D L  I NA R  K + ++ P S      L I+   G+IK ++  D      ++V L 
Sbjct: 4   IADMLTRIRNATRVYKESTDV-PASRFKEEILRILAREGFIKGYERVDVDGKPYLRVYLK 62

Query: 66  GRVNDCRGLTYRQDV----------KAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEA 115
                       + V            R   G        R  G  +++T  GVL   EA
Sbjct: 63  YGPRRQGPDPRPEQVIHHIRRISKPGRRVYVGVKEIPRVRRGLGIAILSTSKGVLTDREA 122

Query: 116 LRRNVGGQVLGY 127
            +  VGG+++  
Sbjct: 123 RKLGVGGELICE 134


>d1a87a_ f.1.1.1 (A:) Colicin N {Escherichia coli [TaxId: 562]}
          Length = 297

 Score = 26.8 bits (59), Expect = 0.73
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 80  VKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEE 114
           + A  I+G  V+   TR+  YV +T PD  +D   
Sbjct: 33  IDAESIKGTEVYTFHTRKGQYVKVTVPDSNIDKMR 67


>d1sxja1 a.80.1.1 (A:548-693) Replication factor C1 {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 146

 Score = 25.5 bits (56), Expect = 1.6
 Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 6/51 (11%)

Query: 5   ILNDALRAIVNAE------RRGKATVELQPISTVMSSFLNIMKYRGYIKDF 49
            + +A   I   +      R  +    L P+  V+SS     K  G++   
Sbjct: 66  AVAEAANCISLGDIVEKKIRSSEQLWSLLPLHAVLSSVYPASKVAGHMAGR 116


>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 146

 Score = 25.2 bits (54), Expect = 2.4
 Identities = 9/26 (34%), Positives = 10/26 (38%)

Query: 49 FQLYDPHRVGKIKVELLGRVNDCRGL 74
          F L+D    G I    L  V    GL
Sbjct: 16 FALFDKDNNGSISSSELATVMRSLGL 41


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.141    0.421 

Gapped
Lambda     K      H
   0.267   0.0583    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 518,200
Number of extensions: 23418
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 9
Length of query: 129
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 53
Effective length of database: 1,364,116
Effective search space: 72298148
Effective search space used: 72298148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (22.6 bits)