Query 032995
Match_columns 129
No_of_seqs 113 out of 1727
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 08:29:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032995.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032995hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.9 2.7E-23 5.9E-28 129.6 13.1 115 2-117 17-139 (160)
2 KOG0027 Calmodulin and related 99.9 2.4E-21 5.2E-26 121.8 13.5 115 3-117 6-132 (151)
3 KOG0028 Ca2+-binding protein ( 99.8 2.5E-19 5.4E-24 110.2 13.0 116 3-118 31-154 (172)
4 KOG0037 Ca2+-binding protein, 99.8 4.6E-19 9.9E-24 114.2 13.6 114 5-118 57-172 (221)
5 PTZ00183 centrin; Provisional 99.8 1.7E-18 3.8E-23 109.1 14.2 115 3-117 15-137 (158)
6 PTZ00184 calmodulin; Provision 99.8 2.4E-18 5.3E-23 107.3 13.7 116 3-118 9-132 (149)
7 KOG0031 Myosin regulatory ligh 99.7 1.6E-16 3.4E-21 97.4 13.0 112 2-117 29-148 (171)
8 KOG0030 Myosin essential light 99.7 1.3E-16 2.8E-21 96.2 10.9 114 2-115 8-133 (152)
9 KOG0036 Predicted mitochondria 99.7 2.1E-15 4.6E-20 105.2 13.5 115 4-118 13-130 (463)
10 KOG0037 Ca2+-binding protein, 99.6 1.1E-14 2.3E-19 94.2 9.0 93 2-94 121-216 (221)
11 PLN02964 phosphatidylserine de 99.5 2.4E-13 5.2E-18 101.3 13.6 106 3-112 141-271 (644)
12 KOG0044 Ca2+ sensor (EF-Hand s 99.5 2.3E-12 5E-17 83.2 12.3 115 4-118 25-159 (193)
13 KOG0034 Ca2+/calmodulin-depend 99.5 3.1E-12 6.8E-17 82.5 11.9 107 3-113 31-150 (187)
14 PF13499 EF-hand_7: EF-hand do 99.4 1.4E-12 3.1E-17 70.8 7.3 62 6-67 1-66 (66)
15 cd05022 S-100A13 S-100A13: S-1 99.4 2.7E-12 5.9E-17 73.5 7.6 67 4-70 7-76 (89)
16 cd05027 S-100B S-100B: S-100B 99.3 1.8E-11 3.9E-16 70.1 8.5 67 4-70 7-80 (88)
17 KOG0044 Ca2+ sensor (EF-Hand s 99.3 1.7E-11 3.6E-16 79.3 8.9 93 6-98 65-175 (193)
18 COG5126 FRQ1 Ca2+-binding prot 99.3 1.2E-11 2.7E-16 77.5 7.8 93 4-97 55-155 (160)
19 KOG0027 Calmodulin and related 99.3 5.6E-11 1.2E-15 74.7 10.4 96 3-98 42-149 (151)
20 PTZ00183 centrin; Provisional 99.3 1.5E-10 3.3E-15 72.8 11.5 95 4-98 52-154 (158)
21 smart00027 EH Eps15 homology d 99.3 6E-11 1.3E-15 69.1 8.3 71 2-74 7-77 (96)
22 cd05025 S-100A1 S-100A1: S-100 99.2 2.6E-10 5.6E-15 65.9 9.6 67 4-70 8-81 (92)
23 cd05029 S-100A6 S-100A6: S-100 99.2 1.7E-10 3.6E-15 66.1 8.3 67 4-70 9-80 (88)
24 cd05031 S-100A10_like S-100A10 99.2 1.4E-10 3E-15 67.4 8.1 67 4-70 7-80 (94)
25 cd00052 EH Eps15 homology doma 99.2 1.3E-10 2.7E-15 63.1 7.4 61 8-70 2-62 (67)
26 cd05026 S-100Z S-100Z: S-100Z 99.2 2.4E-10 5.3E-15 66.2 8.5 67 4-70 9-82 (93)
27 PTZ00184 calmodulin; Provision 99.2 9.7E-10 2.1E-14 68.3 11.0 93 5-97 47-147 (149)
28 cd00213 S-100 S-100: S-100 dom 99.2 4.2E-10 9E-15 64.5 8.4 69 2-70 5-80 (88)
29 PF13833 EF-hand_8: EF-hand do 99.1 3.3E-10 7.1E-15 59.0 6.8 52 18-69 1-53 (54)
30 cd00051 EFh EF-hand, calcium b 99.1 4.8E-10 1E-14 59.2 7.1 61 7-67 2-62 (63)
31 PF14658 EF-hand_9: EF-hand do 99.1 7.1E-10 1.5E-14 59.4 6.4 60 10-69 3-64 (66)
32 KOG0034 Ca2+/calmodulin-depend 99.1 4.1E-09 8.8E-14 68.2 10.7 91 8-98 69-175 (187)
33 cd05023 S-100A11 S-100A11: S-1 99.0 4.2E-09 9.2E-14 60.4 8.3 67 4-70 8-81 (89)
34 KOG0377 Protein serine/threoni 99.0 6.7E-09 1.5E-13 74.0 10.7 114 3-118 462-599 (631)
35 cd00252 SPARC_EC SPARC_EC; ext 98.9 7.9E-09 1.7E-13 62.0 7.7 60 5-68 48-107 (116)
36 KOG0028 Ca2+-binding protein ( 98.9 3.1E-08 6.7E-13 61.6 9.9 95 4-98 68-170 (172)
37 cd05030 calgranulins Calgranul 98.9 2E-08 4.3E-13 57.6 7.3 67 4-70 7-80 (88)
38 KOG0041 Predicted Ca2+-binding 98.9 9.7E-08 2.1E-12 61.6 10.8 102 3-104 97-209 (244)
39 PF13499 EF-hand_7: EF-hand do 98.8 1.9E-08 4.1E-13 54.4 6.2 54 43-96 2-66 (66)
40 KOG4223 Reticulocalbin, calume 98.7 4.7E-08 1E-12 67.1 6.9 111 8-118 166-289 (325)
41 cd05024 S-100A10 S-100A10: A s 98.7 2.5E-07 5.3E-12 52.9 8.4 66 4-70 7-77 (91)
42 KOG0040 Ca2+-binding actin-bun 98.6 2.9E-07 6.4E-12 73.7 8.5 91 3-93 2251-2356(2399)
43 KOG0031 Myosin regulatory ligh 98.6 5.1E-07 1.1E-11 56.0 7.6 65 4-68 100-164 (171)
44 KOG4223 Reticulocalbin, calume 98.6 3.2E-07 7E-12 63.1 7.3 116 3-118 75-212 (325)
45 PF12763 EF-hand_4: Cytoskelet 98.6 1.2E-06 2.7E-11 51.6 8.7 67 2-71 7-73 (104)
46 PF00036 EF-hand_1: EF hand; 98.6 1.3E-07 2.9E-12 42.7 3.6 28 6-33 1-28 (29)
47 KOG0038 Ca2+-binding kinase in 98.5 9.6E-07 2.1E-11 54.4 7.4 73 43-115 73-154 (189)
48 KOG0036 Predicted mitochondria 98.5 6.9E-07 1.5E-11 63.4 6.6 65 3-67 80-144 (463)
49 smart00027 EH Eps15 homology d 98.4 1.4E-06 3.1E-11 50.6 6.4 66 41-106 10-85 (96)
50 PLN02964 phosphatidylserine de 98.4 1.8E-06 3.8E-11 65.3 8.2 63 7-69 181-243 (644)
51 PF14788 EF-hand_10: EF hand; 98.4 2.6E-06 5.6E-11 43.2 6.0 50 21-70 1-50 (51)
52 PF13405 EF-hand_6: EF-hand do 98.4 6.8E-07 1.5E-11 41.0 3.6 30 6-35 1-31 (31)
53 cd00213 S-100 S-100: S-100 dom 98.3 4.7E-06 1E-10 47.5 7.3 59 41-99 8-80 (88)
54 PF00036 EF-hand_1: EF hand; 98.3 8.7E-07 1.9E-11 40.0 3.3 24 74-97 3-27 (29)
55 cd00051 EFh EF-hand, calcium b 98.3 5.3E-06 1.1E-10 43.3 6.6 54 43-96 2-62 (63)
56 KOG0030 Myosin essential light 98.3 3.3E-06 7.2E-11 51.6 6.1 61 5-66 88-148 (152)
57 cd05022 S-100A13 S-100A13: S-1 98.3 7.9E-06 1.7E-10 46.8 7.3 58 42-99 9-76 (89)
58 cd05027 S-100B S-100B: S-100B 98.3 5.4E-06 1.2E-10 47.4 6.5 51 68-118 5-63 (88)
59 PF13405 EF-hand_6: EF-hand do 98.3 1.4E-06 3.1E-11 39.9 3.1 29 72-100 1-31 (31)
60 cd00052 EH Eps15 homology doma 98.2 9.2E-06 2E-10 43.6 6.7 56 44-99 2-62 (67)
61 cd05025 S-100A1 S-100A1: S-100 98.2 1.1E-05 2.3E-10 46.5 7.2 59 41-99 9-81 (92)
62 KOG0377 Protein serine/threoni 98.2 5.6E-06 1.2E-10 59.5 7.0 66 3-68 545-614 (631)
63 KOG4251 Calcium binding protei 98.2 3.3E-06 7.3E-11 56.4 4.9 61 4-64 100-163 (362)
64 KOG2643 Ca2+ binding protein, 98.2 4.9E-05 1.1E-09 54.6 10.8 92 7-98 235-346 (489)
65 cd00252 SPARC_EC SPARC_EC; ext 98.2 1.1E-05 2.5E-10 48.4 6.6 59 38-96 45-106 (116)
66 cd05026 S-100Z S-100Z: S-100Z 98.2 1.8E-05 3.9E-10 45.8 7.2 58 42-99 11-82 (93)
67 KOG0169 Phosphoinositide-speci 98.1 5.1E-05 1.1E-09 57.7 10.2 117 4-120 135-256 (746)
68 cd05031 S-100A10_like S-100A10 98.1 2E-05 4.3E-10 45.6 6.4 60 41-100 8-81 (94)
69 KOG2562 Protein phosphatase 2 98.1 2.7E-05 5.9E-10 56.2 7.9 86 10-98 283-379 (493)
70 PF13202 EF-hand_5: EF hand; P 98.1 7.1E-06 1.5E-10 35.7 3.1 24 7-30 1-24 (25)
71 KOG2643 Ca2+ binding protein, 98.0 2.6E-05 5.6E-10 56.0 7.2 94 4-98 317-453 (489)
72 cd05029 S-100A6 S-100A6: S-100 98.0 3.5E-05 7.7E-10 44.1 6.2 48 70-117 9-62 (88)
73 cd05023 S-100A11 S-100A11: S-1 98.0 8.7E-05 1.9E-09 42.5 7.4 57 43-99 11-81 (89)
74 PRK12309 transaldolase/EF-hand 97.9 4.4E-05 9.5E-10 54.9 6.9 59 34-99 327-386 (391)
75 PF10591 SPARC_Ca_bdg: Secrete 97.9 6.6E-06 1.4E-10 49.2 2.1 60 5-66 54-113 (113)
76 PRK12309 transaldolase/EF-hand 97.9 7.3E-05 1.6E-09 53.8 7.6 53 4-69 333-385 (391)
77 KOG0751 Mitochondrial aspartat 97.9 3.6E-05 7.8E-10 56.2 6.0 107 6-115 109-224 (694)
78 KOG0038 Ca2+-binding kinase in 97.9 0.00013 2.9E-09 45.1 7.2 91 9-99 75-178 (189)
79 KOG0041 Predicted Ca2+-binding 97.8 7E-05 1.5E-09 48.7 5.9 64 60-123 87-152 (244)
80 PF13202 EF-hand_5: EF hand; P 97.8 2.1E-05 4.5E-10 34.2 2.5 22 74-95 2-24 (25)
81 PF13833 EF-hand_8: EF-hand do 97.8 7.1E-05 1.5E-09 38.6 4.3 43 55-97 2-52 (54)
82 KOG0046 Ca2+-binding actin-bun 97.6 0.00032 6.9E-09 51.7 7.1 67 3-70 17-86 (627)
83 cd05030 calgranulins Calgranul 97.6 0.00097 2.1E-08 38.1 7.4 57 43-99 10-80 (88)
84 KOG4666 Predicted phosphate ac 97.5 0.00049 1.1E-08 48.0 6.7 95 5-99 259-360 (412)
85 PF14658 EF-hand_9: EF-hand do 97.5 0.00031 6.8E-09 37.7 4.3 51 47-97 4-63 (66)
86 smart00054 EFh EF-hand, calciu 97.3 0.00043 9.2E-09 29.9 3.0 27 7-33 2-28 (29)
87 cd05024 S-100A10 S-100A10: A s 97.2 0.0052 1.1E-07 35.3 7.6 56 43-99 10-77 (91)
88 PF14788 EF-hand_10: EF hand; 97.2 0.0015 3.3E-08 33.2 4.6 42 58-99 2-50 (51)
89 PF09279 EF-hand_like: Phospho 97.2 0.0017 3.7E-08 36.5 5.4 62 6-68 1-68 (83)
90 KOG0040 Ca2+-binding actin-bun 97.1 0.004 8.7E-08 51.4 8.0 85 37-121 2246-2349(2399)
91 KOG1955 Ral-GTPase effector RA 97.0 0.0023 5.1E-08 47.1 5.7 66 2-69 228-293 (737)
92 KOG4065 Uncharacterized conser 96.9 0.0086 1.9E-07 35.7 6.6 59 7-65 69-141 (144)
93 KOG1707 Predicted Ras related/ 96.8 0.023 4.9E-07 42.9 9.3 98 3-100 193-345 (625)
94 KOG0751 Mitochondrial aspartat 96.7 0.029 6.3E-07 41.6 9.2 97 3-99 31-137 (694)
95 smart00054 EFh EF-hand, calciu 96.7 0.0036 7.9E-08 26.7 3.1 24 44-67 3-26 (29)
96 KOG1029 Endocytic adaptor prot 96.6 0.0062 1.4E-07 47.2 5.8 65 4-70 194-258 (1118)
97 PF12763 EF-hand_4: Cytoskelet 96.5 0.02 4.3E-07 33.8 6.1 57 42-99 11-72 (104)
98 PF05042 Caleosin: Caleosin re 96.4 0.085 1.8E-06 33.8 8.9 95 4-98 6-124 (174)
99 PF05517 p25-alpha: p25-alpha 96.1 0.078 1.7E-06 33.5 7.8 65 6-70 3-70 (154)
100 KOG2562 Protein phosphatase 2 95.7 0.05 1.1E-06 39.9 6.4 89 6-94 312-420 (493)
101 KOG3555 Ca2+-binding proteogly 95.5 0.042 9E-07 39.0 5.2 95 6-100 212-312 (434)
102 PF10591 SPARC_Ca_bdg: Secrete 95.4 0.0047 1E-07 37.0 0.3 58 37-94 50-112 (113)
103 KOG4578 Uncharacterized conser 95.2 0.0075 1.6E-07 42.3 0.8 63 6-68 334-397 (421)
104 KOG4666 Predicted phosphate ac 95.1 0.022 4.8E-07 40.0 2.8 58 41-98 259-324 (412)
105 PLN02952 phosphoinositide phos 95.0 0.18 3.9E-06 38.7 7.5 60 55-114 14-83 (599)
106 PF09279 EF-hand_like: Phospho 95.0 0.12 2.5E-06 28.9 5.1 47 72-118 1-49 (83)
107 KOG1029 Endocytic adaptor prot 94.9 0.42 9E-06 37.7 9.3 58 8-68 19-76 (1118)
108 KOG0042 Glycerol-3-phosphate d 94.8 0.09 2E-06 39.8 5.4 67 4-70 592-658 (680)
109 KOG3555 Ca2+-binding proteogly 94.8 0.062 1.3E-06 38.1 4.3 60 5-68 250-309 (434)
110 PF05042 Caleosin: Caleosin re 94.7 0.17 3.7E-06 32.5 5.8 74 41-114 7-124 (174)
111 KOG0035 Ca2+-binding actin-bun 94.3 0.38 8.2E-06 38.4 8.0 91 4-94 746-848 (890)
112 KOG2243 Ca2+ release channel ( 93.6 0.17 3.8E-06 42.4 5.1 57 9-66 4061-4117(5019)
113 KOG4251 Calcium binding protei 93.5 0.55 1.2E-05 32.0 6.6 60 39-98 99-168 (362)
114 KOG4347 GTPase-activating prot 92.7 0.33 7.2E-06 37.2 5.2 70 22-92 535-612 (671)
115 KOG1265 Phospholipase C [Lipid 92.0 4.1 8.9E-05 33.0 10.3 104 16-122 159-283 (1189)
116 KOG3866 DNA-binding protein of 91.4 0.88 1.9E-05 32.1 5.7 76 23-98 225-324 (442)
117 KOG0169 Phosphoinositide-speci 89.4 3.6 7.7E-05 32.5 7.9 63 39-101 134-203 (746)
118 KOG0046 Ca2+-binding actin-bun 88.5 0.93 2E-05 34.2 4.2 61 38-99 13-86 (627)
119 KOG0998 Synaptic vesicle prote 87.9 0.26 5.6E-06 39.5 1.1 63 4-68 282-344 (847)
120 KOG1707 Predicted Ras related/ 87.3 1.1 2.4E-05 34.3 4.0 62 4-69 314-377 (625)
121 KOG4347 GTPase-activating prot 87.1 0.8 1.7E-05 35.3 3.3 57 6-63 556-612 (671)
122 PLN02952 phosphoinositide phos 86.9 9.9 0.00022 29.6 8.9 80 17-97 12-109 (599)
123 PF11116 DUF2624: Protein of u 86.9 2.1 4.5E-05 24.3 4.1 30 86-115 14-43 (85)
124 PF09069 EF-hand_3: EF-hand; 86.2 4.6 0.0001 23.2 7.4 61 5-68 3-74 (90)
125 KOG1955 Ral-GTPase effector RA 85.3 3.8 8.3E-05 31.0 5.8 53 47-99 237-294 (737)
126 PF08726 EFhand_Ca_insen: Ca2+ 84.6 1.1 2.3E-05 24.4 2.2 28 71-98 6-33 (69)
127 PF07308 DUF1456: Protein of u 83.5 1.6 3.6E-05 23.6 2.6 32 87-118 14-45 (68)
128 PF09069 EF-hand_3: EF-hand; 81.4 2.8 6.2E-05 24.0 3.2 27 72-98 4-30 (90)
129 PF08976 DUF1880: Domain of un 81.2 1.5 3.3E-05 26.3 2.1 32 37-68 3-34 (118)
130 KOG2871 Uncharacterized conser 80.4 1.6 3.4E-05 31.7 2.3 62 4-65 308-370 (449)
131 PLN02222 phosphoinositide phos 80.3 11 0.00024 29.2 6.8 61 5-67 25-88 (581)
132 KOG4578 Uncharacterized conser 79.2 2.1 4.6E-05 30.5 2.6 57 43-99 335-399 (421)
133 PF14513 DAG_kinase_N: Diacylg 78.9 13 0.00028 23.1 6.8 30 86-115 48-78 (138)
134 KOG4065 Uncharacterized conser 78.7 12 0.00026 22.6 6.0 58 37-94 62-141 (144)
135 TIGR00135 gatC glutamyl-tRNA(G 78.6 7.5 0.00016 22.2 4.4 33 87-119 1-33 (93)
136 PLN02230 phosphoinositide phos 78.5 16 0.00035 28.5 7.2 63 4-67 28-100 (598)
137 KOG1264 Phospholipase C [Lipid 78.5 9.7 0.00021 30.9 6.1 122 6-128 145-282 (1267)
138 PLN02228 Phosphoinositide phos 78.1 17 0.00037 28.2 7.2 62 4-67 23-90 (567)
139 KOG2871 Uncharacterized conser 76.5 4.5 9.8E-05 29.4 3.6 39 71-109 309-348 (449)
140 KOG0506 Glutaminase (contains 76.4 13 0.00028 28.1 6.0 79 9-87 90-198 (622)
141 PF03672 UPF0154: Uncharacteri 76.3 9.8 0.00021 20.3 4.4 41 75-115 20-60 (64)
142 KOG1954 Endocytosis/signaling 76.2 7.1 0.00015 28.8 4.5 56 7-65 446-501 (532)
143 PF11848 DUF3368: Domain of un 75.9 8.1 0.00018 19.2 3.8 33 83-115 14-47 (48)
144 PRK00034 gatC aspartyl/glutamy 75.5 10 0.00023 21.6 4.5 33 86-118 2-34 (95)
145 PRK09430 djlA Dna-J like membr 72.6 29 0.00063 24.1 9.5 96 18-117 68-177 (267)
146 PF07128 DUF1380: Protein of u 71.2 7.7 0.00017 24.2 3.3 33 86-118 26-58 (139)
147 PRK00523 hypothetical protein; 70.5 16 0.00034 20.1 4.4 42 74-115 27-68 (72)
148 COG0721 GatC Asp-tRNAAsn/Glu-t 70.0 15 0.00033 21.3 4.3 34 86-119 2-35 (96)
149 PF11116 DUF2624: Protein of u 69.0 19 0.00041 20.5 7.6 48 20-67 13-60 (85)
150 PF07879 PHB_acc_N: PHB/PHA ac 68.5 16 0.00035 19.5 3.9 38 13-50 11-58 (64)
151 KOG1265 Phospholipase C [Lipid 68.5 68 0.0015 26.7 9.3 96 23-121 206-322 (1189)
152 PF01023 S_100: S-100/ICaBP ty 68.4 13 0.00027 18.2 3.8 29 70-98 5-36 (44)
153 PF08414 NADPH_Ox: Respiratory 68.3 22 0.00047 20.9 5.8 58 40-99 29-93 (100)
154 PF01885 PTS_2-RNA: RNA 2'-pho 68.3 11 0.00024 24.7 3.8 37 82-118 28-64 (186)
155 TIGR01848 PHA_reg_PhaR polyhyd 67.8 23 0.0005 21.0 5.5 48 13-60 11-68 (107)
156 COG1460 Uncharacterized protei 66.3 16 0.00035 21.9 3.9 30 88-117 81-110 (114)
157 PF08461 HTH_12: Ribonuclease 64.8 18 0.00038 19.3 3.6 37 82-118 9-45 (66)
158 PF12174 RST: RCD1-SRO-TAF4 (R 64.7 16 0.00034 19.9 3.4 26 73-98 27-53 (70)
159 PF09336 Vps4_C: Vps4 C termin 64.7 13 0.00029 19.6 3.1 26 86-111 29-54 (62)
160 KOG4403 Cell surface glycoprot 63.3 48 0.0011 24.9 6.5 95 18-115 41-147 (575)
161 PRK01844 hypothetical protein; 62.4 24 0.00053 19.3 4.4 42 74-115 26-67 (72)
162 PF03979 Sigma70_r1_1: Sigma-7 62.2 12 0.00026 20.8 2.8 32 83-116 18-49 (82)
163 PTZ00373 60S Acidic ribosomal 62.1 32 0.00069 20.6 5.2 36 83-118 16-51 (112)
164 PRK00819 RNA 2'-phosphotransfe 62.0 19 0.00042 23.4 4.0 37 82-118 29-65 (179)
165 PF01885 PTS_2-RNA: RNA 2'-pho 61.9 20 0.00043 23.5 4.1 37 15-51 26-62 (186)
166 KOG2301 Voltage-gated Ca2+ cha 61.6 7.3 0.00016 33.8 2.4 66 2-68 1414-1483(1592)
167 COG4103 Uncharacterized protei 61.0 39 0.00084 21.2 6.5 91 9-103 34-137 (148)
168 COG3763 Uncharacterized protei 60.9 26 0.00055 19.1 4.7 40 76-115 28-67 (71)
169 cd07894 Adenylation_RNA_ligase 60.5 52 0.0011 23.8 6.3 100 16-115 136-255 (342)
170 KOG3866 DNA-binding protein of 60.2 22 0.00048 25.5 4.2 89 9-98 248-354 (442)
171 KOG4004 Matricellular protein 59.4 4.4 9.5E-05 26.9 0.7 22 44-65 225-246 (259)
172 PRK14981 DNA-directed RNA poly 58.3 25 0.00054 21.0 3.8 31 87-117 79-109 (112)
173 PRK00819 RNA 2'-phosphotransfe 57.6 32 0.0007 22.4 4.5 36 16-51 28-63 (179)
174 PLN02230 phosphoinositide phos 57.1 41 0.00088 26.4 5.5 29 39-68 27-55 (598)
175 PRK13654 magnesium-protoporphy 57.0 18 0.0004 26.0 3.4 94 4-102 44-144 (355)
176 PF05517 p25-alpha: p25-alpha 56.3 49 0.0011 20.9 5.7 45 56-100 17-71 (154)
177 PLN02223 phosphoinositide phos 56.1 76 0.0016 24.6 6.7 64 4-68 15-91 (537)
178 PF08006 DUF1700: Protein of u 55.7 26 0.00055 22.6 3.8 14 103-116 17-30 (181)
179 PF01498 HTH_Tnp_Tc3_2: Transp 55.2 6.3 0.00014 21.1 0.8 36 83-118 10-45 (72)
180 PLN02222 phosphoinositide phos 54.2 82 0.0018 24.7 6.7 59 38-98 22-90 (581)
181 PF07862 Nif11: Nitrogen fixat 53.6 20 0.00043 17.6 2.5 21 88-108 28-48 (49)
182 PLN02228 Phosphoinositide phos 53.5 1.1E+02 0.0023 24.0 7.2 60 37-98 20-92 (567)
183 KOG3449 60S acidic ribosomal p 53.4 47 0.001 19.8 6.3 53 8-65 4-56 (112)
184 PF04157 EAP30: EAP30/Vps36 fa 52.7 68 0.0015 21.5 7.6 56 59-116 87-146 (223)
185 TIGR03798 ocin_TIGR03798 bacte 51.2 36 0.00078 17.9 5.5 45 61-111 5-49 (64)
186 CHL00185 ycf59 magnesium-proto 50.7 27 0.00058 25.1 3.5 94 4-102 40-140 (351)
187 PF05099 TerB: Tellurite resis 49.7 13 0.00028 22.6 1.7 84 18-102 36-131 (140)
188 TIGR01639 P_fal_TIGR01639 Plas 49.6 38 0.00083 17.7 3.9 32 84-115 7-38 (61)
189 COG0541 Ffh Signal recognition 49.6 91 0.002 23.6 6.1 18 100-117 403-420 (451)
190 cd07313 terB_like_2 tellurium 48.8 50 0.0011 18.8 6.6 74 19-93 13-95 (104)
191 PHA02335 hypothetical protein 48.3 58 0.0013 19.4 6.2 27 56-82 23-49 (118)
192 cd01047 ACSF Aerobic Cyclase S 47.6 42 0.0009 23.9 4.0 94 5-103 25-125 (323)
193 PF07308 DUF1456: Protein of u 47.1 46 0.001 17.9 5.8 40 23-62 15-54 (68)
194 KOG0042 Glycerol-3-phosphate d 46.1 37 0.00079 26.5 3.7 49 71-119 593-642 (680)
195 cd08315 Death_TRAILR_DR4_DR5 D 45.7 59 0.0013 18.8 7.1 87 4-112 3-90 (96)
196 PF04876 Tenui_NCP: Tenuivirus 45.6 78 0.0017 20.1 8.4 72 53-125 95-171 (175)
197 cd05833 Ribosomal_P2 Ribosomal 45.2 66 0.0014 19.2 4.8 37 82-118 13-49 (109)
198 PLN02508 magnesium-protoporphy 44.4 42 0.00092 24.2 3.6 83 15-102 53-140 (357)
199 KOG4422 Uncharacterized conser 44.1 1.5E+02 0.0031 22.8 7.3 43 71-113 224-266 (625)
200 COG5069 SAC6 Ca2+-binding acti 43.7 49 0.0011 25.3 4.0 75 6-81 486-564 (612)
201 KOG0998 Synaptic vesicle prote 43.6 20 0.00042 29.3 2.2 63 5-69 11-73 (847)
202 KOG4286 Dystrophin-like protei 43.1 1.9E+02 0.0041 23.8 7.1 46 10-55 475-520 (966)
203 COG1775 HgdB Benzoyl-CoA reduc 42.5 1.4E+02 0.003 22.1 7.5 71 55-125 157-231 (379)
204 PF09682 Holin_LLH: Phage holi 42.0 72 0.0016 18.8 4.0 26 91-116 76-101 (108)
205 KOG4403 Cell surface glycoprot 41.5 93 0.002 23.5 5.0 61 4-68 67-128 (575)
206 PF13331 DUF4093: Domain of un 41.4 53 0.0012 18.6 3.2 28 83-112 59-86 (87)
207 PF06384 ICAT: Beta-catenin-in 40.7 54 0.0012 18.3 3.0 33 83-115 6-45 (78)
208 PF08044 DUF1707: Domain of un 40.5 53 0.0011 16.7 2.9 30 83-112 20-49 (53)
209 PLN02223 phosphoinositide phos 40.3 1.1E+02 0.0023 23.9 5.4 24 73-96 18-41 (537)
210 COG1859 KptA RNA:NAD 2'-phosph 40.3 62 0.0013 21.8 3.8 61 56-118 31-91 (211)
211 PLN00138 large subunit ribosom 39.2 87 0.0019 18.8 4.8 36 83-118 14-49 (113)
212 cd07176 terB tellurite resista 38.9 76 0.0016 18.1 4.2 72 19-91 16-98 (111)
213 PRK12821 aspartyl/glutamyl-tRN 38.7 82 0.0018 23.9 4.5 35 85-119 387-421 (477)
214 PF09415 CENP-X: CENP-S associ 38.0 71 0.0015 17.4 4.1 57 42-98 4-67 (72)
215 PF09068 EF-hand_2: EF hand; 37.9 96 0.0021 18.9 6.7 27 72-98 98-125 (127)
216 TIGR02029 AcsF magnesium-proto 37.6 44 0.00095 24.0 2.9 94 5-103 35-135 (337)
217 smart00513 SAP Putative DNA-bi 37.4 45 0.00098 15.0 2.6 19 86-104 3-21 (35)
218 TIGR01209 RNA ligase, Pab1020 36.5 1.8E+02 0.0038 21.6 6.6 105 11-115 163-288 (374)
219 PF12926 MOZART2: Mitotic-spin 36.3 86 0.0019 17.9 3.7 43 75-117 29-71 (88)
220 cd08316 Death_FAS_TNFRSF6 Deat 35.1 94 0.002 18.0 6.9 75 20-113 16-93 (97)
221 PF09373 PMBR: Pseudomurein-bi 35.1 49 0.0011 14.9 2.0 15 84-98 2-16 (33)
222 cd04411 Ribosomal_P1_P2_L12p R 34.5 1E+02 0.0022 18.2 4.5 31 87-117 17-47 (105)
223 PF02037 SAP: SAP domain; Int 33.9 54 0.0012 14.9 2.1 19 86-104 3-21 (35)
224 PRK10945 gene expression modul 33.4 87 0.0019 17.2 3.6 16 84-99 32-47 (72)
225 COG2818 Tag 3-methyladenine DN 33.4 40 0.00086 22.2 2.0 45 3-47 53-97 (188)
226 TIGR02675 tape_meas_nterm tape 32.6 58 0.0012 17.8 2.4 16 18-33 27-42 (75)
227 PF09494 Slx4: Slx4 endonuclea 32.3 82 0.0018 16.5 3.7 18 84-101 42-59 (64)
228 PRK10391 oriC-binding nucleoid 31.1 96 0.0021 16.9 3.0 27 90-116 17-44 (71)
229 PF06648 DUF1160: Protein of u 31.1 1.3E+02 0.0028 18.4 4.0 12 87-98 68-79 (122)
230 PF12486 DUF3702: ImpA domain 30.6 1.3E+02 0.0028 19.1 3.9 42 58-99 56-98 (148)
231 PF04433 SWIRM: SWIRM domain; 30.1 47 0.001 18.5 1.8 36 46-81 42-79 (86)
232 TIGR00624 tag DNA-3-methyladen 29.5 1.4E+02 0.003 19.5 4.1 49 65-113 47-96 (179)
233 PF13829 DUF4191: Domain of un 29.5 1.5E+02 0.0032 20.3 4.2 35 82-116 163-197 (224)
234 PF09873 DUF2100: Uncharacteri 29.5 1.4E+02 0.0031 20.0 4.1 59 54-116 38-97 (215)
235 PF11300 DUF3102: Protein of u 28.8 1.5E+02 0.0032 18.4 5.4 75 21-97 38-128 (130)
236 PRK06402 rpl12p 50S ribosomal 28.8 1.3E+02 0.0029 17.8 4.0 32 86-117 16-47 (106)
237 PF02969 TAF: TATA box binding 28.5 1E+02 0.0023 16.5 4.3 39 87-125 4-43 (66)
238 COG1448 TyrB Aspartate/tyrosin 28.5 1.4E+02 0.0031 22.2 4.3 41 76-116 146-202 (396)
239 PHA02105 hypothetical protein 28.1 1E+02 0.0022 16.2 3.4 48 21-68 4-56 (68)
240 PHA01351 putative minor struct 27.8 3.4E+02 0.0075 22.3 6.5 32 83-114 1031-1063(1070)
241 PF08672 APC2: Anaphase promot 27.7 1E+02 0.0022 16.1 3.4 29 86-114 11-44 (60)
242 PRK10867 signal recognition pa 27.6 2.7E+02 0.0059 21.0 6.7 18 100-117 400-417 (433)
243 PF02459 Adeno_terminal: Adeno 27.5 1.7E+02 0.0036 22.8 4.6 52 63-116 449-501 (548)
244 PF12307 DUF3631: Protein of u 27.2 1.9E+02 0.0041 19.1 5.8 47 69-117 101-157 (184)
245 PF02761 Cbl_N2: CBL proto-onc 26.9 1.3E+02 0.0028 17.1 4.2 61 38-99 4-71 (85)
246 PRK10353 3-methyl-adenine DNA 26.8 1.3E+02 0.0027 19.9 3.5 49 65-113 48-97 (187)
247 PRK00771 signal recognition pa 26.7 2.8E+02 0.0062 20.9 6.6 18 100-117 396-413 (437)
248 KOG0035 Ca2+-binding actin-bun 26.5 3.9E+02 0.0084 22.4 7.4 57 43-99 749-817 (890)
249 TIGR00959 ffh signal recogniti 26.4 2.9E+02 0.0062 20.9 6.7 29 39-70 311-339 (428)
250 PF03874 RNA_pol_Rpb4: RNA pol 26.4 89 0.0019 18.4 2.7 16 99-114 97-112 (117)
251 PF02268 TFIIA_gamma_N: Transc 26.2 1E+02 0.0022 15.5 4.0 32 92-123 15-48 (49)
252 PF02337 Gag_p10: Retroviral G 25.4 1.4E+02 0.0029 17.2 3.1 27 91-117 13-39 (90)
253 KOG0869 CCAAT-binding factor, 25.2 2E+02 0.0042 18.5 4.6 33 83-115 83-115 (168)
254 PF15565 Imm16: Immunity prote 25.0 1.4E+02 0.0031 17.7 3.2 24 60-83 15-44 (106)
255 COG2058 RPP1A Ribosomal protei 25.0 1.6E+02 0.0035 17.6 4.0 33 85-117 15-47 (109)
256 PF03800 Nuf2: Nuf2 family; I 24.9 45 0.00097 20.6 1.2 23 87-109 12-34 (146)
257 PF12631 GTPase_Cys_C: Catalyt 24.3 1.3E+02 0.0028 16.2 5.2 48 68-115 20-72 (73)
258 PTZ00373 60S Acidic ribosomal 24.1 1.7E+02 0.0037 17.5 5.5 50 11-65 9-58 (112)
259 PF08671 SinI: Anti-repressor 24.1 77 0.0017 14.1 1.6 12 86-97 16-27 (30)
260 PF04558 tRNA_synt_1c_R1: Glut 24.1 78 0.0017 20.3 2.2 44 71-115 85-129 (164)
261 PF09832 DUF2059: Uncharacteri 23.2 1.1E+02 0.0023 15.8 2.3 31 90-120 3-34 (64)
262 PF13344 Hydrolase_6: Haloacid 22.7 48 0.001 19.1 1.0 26 82-107 37-62 (101)
263 PRK10236 hypothetical protein; 22.4 2.7E+02 0.0059 19.2 7.6 48 71-118 91-144 (237)
264 KOG0039 Ferric reductase, NADH 22.3 4.1E+02 0.0089 21.3 6.2 26 40-66 17-42 (646)
265 PHA02986 hypothetical protein; 22.0 2E+02 0.0044 17.6 4.3 56 55-118 24-79 (141)
266 PF09454 Vps23_core: Vps23 cor 21.9 1.4E+02 0.0031 15.8 3.1 15 83-97 36-50 (65)
267 cd05831 Ribosomal_P1 Ribosomal 21.9 1.8E+02 0.004 17.0 4.8 36 83-118 14-49 (103)
268 PRK08332 ribonucleotide-diphos 21.5 2.9E+02 0.0062 25.2 5.4 104 24-129 604-726 (1740)
269 PF03352 Adenine_glyco: Methyl 21.2 1.1E+02 0.0024 20.0 2.4 55 58-115 39-94 (179)
270 PF08812 YtxC: YtxC-like famil 20.9 1.3E+02 0.0028 20.3 2.9 40 76-115 148-190 (221)
271 KOG2351 RNA polymerase II, fou 20.9 1.5E+02 0.0032 18.3 2.8 34 84-117 93-129 (134)
272 PF06837 Fijivirus_P9-2: Fijiv 20.7 1E+02 0.0023 20.3 2.2 29 97-125 40-68 (214)
273 PF02885 Glycos_trans_3N: Glyc 20.5 1.5E+02 0.0032 15.5 3.0 30 85-114 13-43 (66)
274 TIGR03573 WbuX N-acetyl sugar 20.5 3.4E+02 0.0074 19.6 5.2 60 26-96 275-342 (343)
275 PF09851 SHOCT: Short C-termin 20.4 1E+02 0.0022 13.6 2.0 13 84-96 14-26 (31)
276 PF09061 Stirrup: Stirrup; In 20.2 52 0.0011 17.6 0.7 29 85-113 48-76 (79)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.91 E-value=2.7e-23 Score=129.60 Aligned_cols=115 Identities=19% Similarity=0.278 Sum_probs=109.4
Q ss_pred ccHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH-------HHHH
Q 032995 2 ENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL-------LKVQ 74 (129)
Q Consensus 2 ~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~-------~~~~ 74 (129)
++++++++.|..+|++++|.|++.+|..+++.+|.+++..++..++..++. +++.|+|.+|+..|... +.++
T Consensus 17 ~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~ 95 (160)
T COG5126 17 EQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELR 95 (160)
T ss_pred HHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHH
Confidence 567899999999999999999999999999999999999999999999998 88999999999998653 7999
Q ss_pred HHhhhcc-CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhch
Q 032995 75 HAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCEVCTS 117 (129)
Q Consensus 75 ~~f~~~d-~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~ 117 (129)
++|+.|| +++|+|+..+++.++..+|..+++++++++++.+|.
T Consensus 96 ~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~ 139 (160)
T COG5126 96 EAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDE 139 (160)
T ss_pred HHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCC
Confidence 9999999 799999999999999999999999999999999995
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.88 E-value=2.4e-21 Score=121.82 Aligned_cols=115 Identities=22% Similarity=0.381 Sum_probs=109.4
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH-----------H
Q 032995 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL-----------L 71 (129)
Q Consensus 3 ~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~-----------~ 71 (129)
+..+++.+|..+|.+++|+|+..++..+++.+|..++..++..++..+|.+++|.|++.+|+.++... +
T Consensus 6 ~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~ 85 (151)
T KOG0027|consen 6 QILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSE 85 (151)
T ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHH
Confidence 46789999999999999999999999999999999999999999999999999999999999998753 3
Q ss_pred HHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhch
Q 032995 72 KVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCEVCTS 117 (129)
Q Consensus 72 ~~~~~f~~~d-~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~ 117 (129)
.++++|+.|| +++|+|+..||+.+|..+|.+.+.+++..+++.+|.
T Consensus 86 el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~ 132 (151)
T KOG0027|consen 86 ELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDV 132 (151)
T ss_pred HHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCC
Confidence 8999999999 799999999999999999999999999999999986
No 3
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=2.5e-19 Score=110.23 Aligned_cols=116 Identities=17% Similarity=0.285 Sum_probs=109.3
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-------HHHHHH
Q 032995 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF-------LLKVQH 75 (129)
Q Consensus 3 ~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~-------~~~~~~ 75 (129)
+.++++..|..||++++|+|+..+|+.+++.+|+.+...++.++...+|.++.|.|+|++|+..+.. .+.++.
T Consensus 31 q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~ 110 (172)
T KOG0028|consen 31 QKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKK 110 (172)
T ss_pred HHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHH
Confidence 4578999999999999999999999999999999999999999999999999999999999998754 378999
Q ss_pred Hhhhcc-CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhchh
Q 032995 76 AFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCEVCTSI 118 (129)
Q Consensus 76 ~f~~~d-~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~ 118 (129)
+|+.+| +++|.|+..+|+.+...+|.+++++++.+|++.+|..
T Consensus 111 afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d 154 (172)
T KOG0028|consen 111 AFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRD 154 (172)
T ss_pred HHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhccc
Confidence 999999 7999999999999999999999999999999999864
No 4
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.83 E-value=4.6e-19 Score=114.22 Aligned_cols=114 Identities=27% Similarity=0.547 Sum_probs=108.1
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhCCC-CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHhhhcc-C
Q 032995 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAVGNL-DFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLE-R 82 (129)
Q Consensus 5 ~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~f~~~d-~ 82 (129)
..+..+|...|.+++|.|+-+|++.+|..... +.+.+.++.++..+|.+.+|.|+++||..+|+.++..+.+|+.+| +
T Consensus 57 ~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~Wr~vF~~~D~D 136 (221)
T KOG0037|consen 57 PQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQWRNVFRTYDRD 136 (221)
T ss_pred HHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHHHHhcccC
Confidence 36889999999999999999999999997655 679999999999999999999999999999999999999999999 8
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhchh
Q 032995 83 GRGYLVPDNVYEALVKIGFSLDSPAFYTVCEVCTSI 118 (129)
Q Consensus 83 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~ 118 (129)
++|.|+..||+.+|..+|+.++++..+.+++++|..
T Consensus 137 ~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~ 172 (221)
T KOG0037|consen 137 RSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRF 172 (221)
T ss_pred CCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999943
No 5
>PTZ00183 centrin; Provisional
Probab=99.82 E-value=1.7e-18 Score=109.14 Aligned_cols=115 Identities=22% Similarity=0.332 Sum_probs=106.7
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH-------HHHHH
Q 032995 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL-------LKVQH 75 (129)
Q Consensus 3 ~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~-------~~~~~ 75 (129)
+.+++..+|..+|++++|.|+..+|..++...|...+...+..++..+|.+++|.|+|.+|+.++... ..++.
T Consensus 15 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~ 94 (158)
T PTZ00183 15 QKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILK 94 (158)
T ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHH
Confidence 56789999999999999999999999999999888889999999999999999999999999877542 57899
Q ss_pred Hhhhcc-CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhch
Q 032995 76 AFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCEVCTS 117 (129)
Q Consensus 76 ~f~~~d-~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~ 117 (129)
+|+.+| +++|.|+..||..++..+|.+++..++..++..+|.
T Consensus 95 ~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~ 137 (158)
T PTZ00183 95 AFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADR 137 (158)
T ss_pred HHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 999999 799999999999999999999999999999999984
No 6
>PTZ00184 calmodulin; Provisional
Probab=99.81 E-value=2.4e-18 Score=107.32 Aligned_cols=116 Identities=22% Similarity=0.330 Sum_probs=106.6
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH-------HHHHH
Q 032995 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL-------LKVQH 75 (129)
Q Consensus 3 ~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~-------~~~~~ 75 (129)
+.+.+...|..+|.+++|.|+..+|..++...+..++...+..++..++.+++|.|+|++|+..+... ..++.
T Consensus 9 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~ 88 (149)
T PTZ00184 9 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKE 88 (149)
T ss_pred HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHH
Confidence 45678899999999999999999999999999888888999999999999999999999999887642 57899
Q ss_pred Hhhhcc-CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhchh
Q 032995 76 AFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCEVCTSI 118 (129)
Q Consensus 76 ~f~~~d-~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~ 118 (129)
+|+.+| +++|.|+.+++..++..+|.+++..++..+++.+|..
T Consensus 89 ~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~ 132 (149)
T PTZ00184 89 AFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVD 132 (149)
T ss_pred HHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCC
Confidence 999999 7999999999999999999999999999999999753
No 7
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.74 E-value=1.6e-16 Score=97.39 Aligned_cols=112 Identities=18% Similarity=0.257 Sum_probs=103.2
Q ss_pred ccHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-------HHHHH
Q 032995 2 ENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF-------LLKVQ 74 (129)
Q Consensus 2 ~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~-------~~~~~ 74 (129)
.+++++++.|...|.+++|.|+.++++..+..+|...+++++..++. .+.|.|+|.-|+.++.. .+.+.
T Consensus 29 ~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~----Ea~gPINft~FLTmfGekL~gtdpe~~I~ 104 (171)
T KOG0031|consen 29 SQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMK----EAPGPINFTVFLTMFGEKLNGTDPEEVIL 104 (171)
T ss_pred HHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH----hCCCCeeHHHHHHHHHHHhcCCCHHHHHH
Confidence 36889999999999999999999999999999999999999999995 45789999999998753 37899
Q ss_pred HHhhhcc-CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhch
Q 032995 75 HAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCEVCTS 117 (129)
Q Consensus 75 ~~f~~~d-~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~ 117 (129)
.+|+.|| ++.|.|..+.++++|...|..+++++++++++.+..
T Consensus 105 ~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~ 148 (171)
T KOG0031|consen 105 NAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPI 148 (171)
T ss_pred HHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCc
Confidence 9999999 699999999999999999999999999999998854
No 8
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.73 E-value=1.3e-16 Score=96.21 Aligned_cols=114 Identities=14% Similarity=0.193 Sum_probs=103.7
Q ss_pred ccHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCC--CCCcccHHHHHHHHHHH---------
Q 032995 2 ENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFD--RNGTMSFEEFVELNKFL--------- 70 (129)
Q Consensus 2 ~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~--~~~~i~~~ef~~~~~~~--------- 70 (129)
++..+++.+|..||..++|+|+..+...+|+.+|.++++.++.+....+..+ +-.+++|++|+-+++.+
T Consensus 8 d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~ 87 (152)
T KOG0030|consen 8 DQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTY 87 (152)
T ss_pred chHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcH
Confidence 5667899999999999999999999999999999999999999999888666 34689999999998765
Q ss_pred HHHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 032995 71 LKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCEVC 115 (129)
Q Consensus 71 ~~~~~~f~~~d-~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 115 (129)
+..-+-.+.|| .++|.|...|++.+|..+|..++++|++.+++..
T Consensus 88 edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~ 133 (152)
T KOG0030|consen 88 EDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ 133 (152)
T ss_pred HHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc
Confidence 67778889999 6999999999999999999999999999999865
No 9
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.68 E-value=2.1e-15 Score=105.25 Aligned_cols=115 Identities=17% Similarity=0.309 Sum_probs=105.9
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCC-CCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-HHHHHHHhhhcc
Q 032995 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLD-FSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF-LLKVQHAFSDLE 81 (129)
Q Consensus 4 ~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~-~~~~~~~f~~~d 81 (129)
..++..+|..+|.+++|.++..++...+..+..+ ++...++.++..+|.+.+|.++|.+|...+.. ...+.+.|+..|
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~F~~iD 92 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELYRIFQSID 92 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHHHHhhhc
Confidence 3478899999999999999999999999998766 77888899999999999999999999998864 568999999999
Q ss_pred -CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhchh
Q 032995 82 -RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCEVCTSI 118 (129)
Q Consensus 82 -~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~ 118 (129)
+.+|.|...|+.+.|+.+|.++++++++.+++++|+.
T Consensus 93 ~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~ 130 (463)
T KOG0036|consen 93 LEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKD 130 (463)
T ss_pred cccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccC
Confidence 7999999999999999999999999999999999974
No 10
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.60 E-value=1.1e-14 Score=94.20 Aligned_cols=93 Identities=20% Similarity=0.400 Sum_probs=84.5
Q ss_pred ccHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHhhhcc
Q 032995 2 ENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLE 81 (129)
Q Consensus 2 ~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~f~~~d 81 (129)
..+..++.+|..+|.|++|.|+..||+.+|..+|+.++++..+.+++++|...+|.|.|++|+.++..+..+.++|+.+|
T Consensus 121 ~~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~lt~~Fr~~D 200 (221)
T KOG0037|consen 121 KYINQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQRLTEAFRRRD 200 (221)
T ss_pred HHHHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678899999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred -CCCCccc--HHHHHH
Q 032995 82 -RGRGYLV--PDNVYE 94 (129)
Q Consensus 82 -~~~g~i~--~~e~~~ 94 (129)
+..|.|+ .++|..
T Consensus 201 ~~q~G~i~~~y~dfl~ 216 (221)
T KOG0037|consen 201 TAQQGSITISYDDFLQ 216 (221)
T ss_pred cccceeEEEeHHHHHH
Confidence 6777755 455543
No 11
>PLN02964 phosphatidylserine decarboxylase
Probab=99.55 E-value=2.4e-13 Score=101.27 Aligned_cols=106 Identities=22% Similarity=0.348 Sum_probs=93.2
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCC-CCCCHHH---HHHHHHHhcCCCCCcccHHHHHHHHHHH------HH
Q 032995 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGN-LDFSLSV---VQQMIRMYDFDRNGTMSFEEFVELNKFL------LK 72 (129)
Q Consensus 3 ~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~---~~~~~~~~d~~~~~~i~~~ef~~~~~~~------~~ 72 (129)
+.+++++.|..+|++++|.+ +..+++.+| ..++..+ ++.++..+|.+++|.|+++||+.++..+ +.
T Consensus 141 qi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEE 216 (644)
T PLN02964 141 EPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANK 216 (644)
T ss_pred HHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHH
Confidence 56789999999999999997 888999998 4777776 7999999999999999999999988754 57
Q ss_pred HHHHhhhcc-CCCCcccHHHHHHHHHH-------------cCCCCCH-HHHHHHH
Q 032995 73 VQHAFSDLE-RGRGYLVPDNVYEALVK-------------IGFSLDS-PAFYTVC 112 (129)
Q Consensus 73 ~~~~f~~~d-~~~g~i~~~e~~~~l~~-------------~~~~~~~-~~~~~l~ 112 (129)
++++|+.+| +++|+|+.+||.+++.. +|..++. ++...|+
T Consensus 217 L~eaFk~fDkDgdG~Is~dEL~~vL~~~~~~~~~~~~cp~cg~~l~~~~~~~~ii 271 (644)
T PLN02964 217 KEELFKAADLNGDGVVTIDELAALLALQQEQEPIINNCPVCGEALGVSDKLNAMI 271 (644)
T ss_pred HHHHHHHhCCCCCCcCCHHHHHHHHHhcccCcchhhhchhhcCcccchhhHHHHH
Confidence 999999999 79999999999999988 7777765 6777777
No 12
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.48 E-value=2.3e-12 Score=83.25 Aligned_cols=115 Identities=17% Similarity=0.334 Sum_probs=95.1
Q ss_pred HHHHHHHHhhhCCC-CCCcccHHHHHHHHHhCCC-CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH------HHHHH
Q 032995 4 TAVLREWFDRVDSE-KTGSIAAAQLKHAFAVGNL-DFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL------LKVQH 75 (129)
Q Consensus 4 ~~~~~~~F~~~d~~-~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~------~~~~~ 75 (129)
.++++.+++.|-.+ ++|.++..+|+.++...+. +-+...+..+|+.+|.+++|.|+|.||+..++.. +.++.
T Consensus 25 ~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w 104 (193)
T KOG0044|consen 25 KKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKW 104 (193)
T ss_pred HHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhh
Confidence 45788888887654 4899999999999999875 5567778999999999999999999999988654 78999
Q ss_pred Hhhhcc-CCCCcccHHHHHHHHHHc----CC-------CCCHHHHHHHHHhhchh
Q 032995 76 AFSDLE-RGRGYLVPDNVYEALVKI----GF-------SLDSPAFYTVCEVCTSI 118 (129)
Q Consensus 76 ~f~~~d-~~~g~i~~~e~~~~l~~~----~~-------~~~~~~~~~l~~~~d~~ 118 (129)
+|+.|| +++|+|++.|+..++..+ |. .-..+.+..+++.+|.+
T Consensus 105 ~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n 159 (193)
T KOG0044|consen 105 AFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKN 159 (193)
T ss_pred hheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCC
Confidence 999999 899999999998888774 32 12456678888888864
No 13
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.46 E-value=3.1e-12 Score=82.50 Aligned_cols=107 Identities=22% Similarity=0.404 Sum_probs=87.3
Q ss_pred cHHHHHHHHhhhCCC-CCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCc-ccHHHHHHHHHHH-------HHH
Q 032995 3 NTAVLREWFDRVDSE-KTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGT-MSFEEFVELNKFL-------LKV 73 (129)
Q Consensus 3 ~~~~~~~~F~~~d~~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~-i~~~ef~~~~~~~-------~~~ 73 (129)
++..+...|..++.+ ++|.++.++|..++... .+....+++..++.+++|. |+|++|+..+... +++
T Consensus 31 EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~----~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl 106 (187)
T KOG0034|consen 31 EIERLYERFKKLDRNNGDGYLTKEEFLSIPELA----LNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKL 106 (187)
T ss_pred HHHHHHHHHHHhccccccCccCHHHHHHHHHHh----cCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHH
Confidence 466788899999999 89999999999999432 2334678888898888887 9999999988643 589
Q ss_pred HHHhhhcc-CCCCcccHHHHHHHHHHc-CCCCC--HHHHHHHHH
Q 032995 74 QHAFSDLE-RGRGYLVPDNVYEALVKI-GFSLD--SPAFYTVCE 113 (129)
Q Consensus 74 ~~~f~~~d-~~~g~i~~~e~~~~l~~~-~~~~~--~~~~~~l~~ 113 (129)
+-+|+.|| +++|+|+++|+..++..+ |...+ ++..+.+++
T Consensus 107 ~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d 150 (187)
T KOG0034|consen 107 RFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVD 150 (187)
T ss_pred HHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHH
Confidence 99999999 899999999999999995 44555 666655554
No 14
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.42 E-value=1.4e-12 Score=70.82 Aligned_cols=62 Identities=31% Similarity=0.550 Sum_probs=53.7
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHH----HHHHHHHHhcCCCCCcccHHHHHHHH
Q 032995 6 VLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLS----VVQQMIRMYDFDRNGTMSFEEFVELN 67 (129)
Q Consensus 6 ~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~----~~~~~~~~~d~~~~~~i~~~ef~~~~ 67 (129)
+++++|..+|.+++|+|+.++|..++..++...+.. .++.++..+|.+++|.|+|+||..++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 478999999999999999999999999998765444 45556999999999999999998764
No 15
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.40 E-value=2.7e-12 Score=73.53 Aligned_cols=67 Identities=19% Similarity=0.245 Sum_probs=61.3
Q ss_pred HHHHHHHHhhhCC-CCCCcccHHHHHHHHHh-CCCCCCH-HHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 032995 4 TAVLREWFDRVDS-EKTGSIAAAQLKHAFAV-GNLDFSL-SVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (129)
Q Consensus 4 ~~~~~~~F~~~d~-~~~g~i~~~e~~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (129)
...+..+|+.||. +++|+|+..+|+.++.. +|..++. .++..+++.+|.+++|.|+|++|+.++..+
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 4578899999999 99999999999999999 7766777 899999999999999999999999988755
No 16
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.33 E-value=1.8e-11 Score=70.11 Aligned_cols=67 Identities=19% Similarity=0.284 Sum_probs=60.9
Q ss_pred HHHHHHHHhhhC-CCCCC-cccHHHHHHHHHh-----CCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 032995 4 TAVLREWFDRVD-SEKTG-SIAAAQLKHAFAV-----GNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (129)
Q Consensus 4 ~~~~~~~F~~~d-~~~~g-~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (129)
...+.++|..|| .+++| .|+..+|+.+|+. +|...++.++..+++.+|.+++|.|+|++|+.++..+
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 457899999998 79999 5999999999999 8888899999999999999999999999999887644
No 17
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.33 E-value=1.7e-11 Score=79.30 Aligned_cols=93 Identities=20% Similarity=0.323 Sum_probs=83.0
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH---------------
Q 032995 6 VLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL--------------- 70 (129)
Q Consensus 6 ~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~--------------- 70 (129)
-...+|+.+|.+++|.|++.||..++..+..+...+.+.-.|+.||.+++|.|++++++.++...
T Consensus 65 y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~ 144 (193)
T KOG0044|consen 65 YAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEET 144 (193)
T ss_pred HHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCccccc
Confidence 45678999999999999999999999998888888888999999999999999999999987532
Q ss_pred --HHHHHHhhhcc-CCCCcccHHHHHHHHHH
Q 032995 71 --LKVQHAFSDLE-RGRGYLVPDNVYEALVK 98 (129)
Q Consensus 71 --~~~~~~f~~~d-~~~g~i~~~e~~~~l~~ 98 (129)
+....+|+.+| +++|.||.+||...+..
T Consensus 145 ~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 145 PEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred HHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 56888999999 79999999999887766
No 18
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.32 E-value=1.2e-11 Score=77.51 Aligned_cols=93 Identities=15% Similarity=0.280 Sum_probs=71.4
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhCC-CCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH------HHHHHH
Q 032995 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGN-LDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL------LKVQHA 76 (129)
Q Consensus 4 ~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~------~~~~~~ 76 (129)
...+.++|..+|. ++|.|++.+|..++.... ...+.+++...|+.||.+++|.|+..+....++.+ +.+..+
T Consensus 55 ~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~l 133 (160)
T COG5126 55 EAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKL 133 (160)
T ss_pred HHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHH
Confidence 3467778888877 778888888888887653 45667788888888888888888888888877654 677888
Q ss_pred hhhcc-CCCCcccHHHHHHHHH
Q 032995 77 FSDLE-RGRGYLVPDNVYEALV 97 (129)
Q Consensus 77 f~~~d-~~~g~i~~~e~~~~l~ 97 (129)
++.+| +++|.|+.++|.+.+.
T Consensus 134 l~~~d~d~dG~i~~~eF~~~~~ 155 (160)
T COG5126 134 LKEYDEDGDGEIDYEEFKKLIK 155 (160)
T ss_pred HHhcCCCCCceEeHHHHHHHHh
Confidence 88888 6888888888876654
No 19
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.31 E-value=5.6e-11 Score=74.70 Aligned_cols=96 Identities=16% Similarity=0.257 Sum_probs=83.8
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCC-----CHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH------H
Q 032995 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDF-----SLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL------L 71 (129)
Q Consensus 3 ~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~-----~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~------~ 71 (129)
...++..++..+|.+++|.|++.+|..++...+... +..++..+|+.+|.+++|.|+..++...+..+ +
T Consensus 42 t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~ 121 (151)
T KOG0027|consen 42 TEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDE 121 (151)
T ss_pred CHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHH
Confidence 356889999999999999999999999999775432 34589999999999999999999999999875 6
Q ss_pred HHHHHhhhcc-CCCCcccHHHHHHHHHH
Q 032995 72 KVQHAFSDLE-RGRGYLVPDNVYEALVK 98 (129)
Q Consensus 72 ~~~~~f~~~d-~~~g~i~~~e~~~~l~~ 98 (129)
.+...++..| +++|.|+.++|..++..
T Consensus 122 e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 122 ECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred HHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 8899999999 79999999999887754
No 20
>PTZ00183 centrin; Provisional
Probab=99.28 E-value=1.5e-10 Score=72.77 Aligned_cols=95 Identities=17% Similarity=0.333 Sum_probs=81.7
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhC-CCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH------HHHHHH
Q 032995 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVG-NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL------LKVQHA 76 (129)
Q Consensus 4 ~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~------~~~~~~ 76 (129)
...+..+|..+|.+++|.|++.+|..++... ....+...++.+|+.+|.+++|.|+..+|..++... ..+..+
T Consensus 52 ~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~ 131 (158)
T PTZ00183 52 KEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEM 131 (158)
T ss_pred HHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3467889999999999999999999887753 334567788999999999999999999999988753 678999
Q ss_pred hhhcc-CCCCcccHHHHHHHHHH
Q 032995 77 FSDLE-RGRGYLVPDNVYEALVK 98 (129)
Q Consensus 77 f~~~d-~~~g~i~~~e~~~~l~~ 98 (129)
|..+| +++|.|+.++|..++..
T Consensus 132 ~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 132 IDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHhCCCCCCcCcHHHHHHHHhc
Confidence 99999 79999999999888765
No 21
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.27 E-value=6e-11 Score=69.14 Aligned_cols=71 Identities=18% Similarity=0.377 Sum_probs=62.8
Q ss_pred ccHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHH
Q 032995 2 ENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFLLKVQ 74 (129)
Q Consensus 2 ~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~ 74 (129)
++...++.+|..+|.+++|.|+..++..+++..+ ++..++..++..++.+++|.|+|++|+.++..+....
T Consensus 7 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~ 77 (96)
T smart00027 7 EDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKL 77 (96)
T ss_pred HHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999864 6888999999999999999999999999888665443
No 22
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.23 E-value=2.6e-10 Score=65.95 Aligned_cols=67 Identities=21% Similarity=0.301 Sum_probs=58.9
Q ss_pred HHHHHHHHhhhC-CCCCC-cccHHHHHHHHHh-CC----CCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 032995 4 TAVLREWFDRVD-SEKTG-SIAAAQLKHAFAV-GN----LDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (129)
Q Consensus 4 ~~~~~~~F~~~d-~~~~g-~i~~~e~~~~l~~-~~----~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (129)
++.+.+.|..|| .+++| .|+..+++.+++. +| ..++..+++.++..+|.+++|.|+|++|+.++..+
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 467899999997 99999 5999999999985 43 35688999999999999999999999999988755
No 23
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.22 E-value=1.7e-10 Score=66.12 Aligned_cols=67 Identities=15% Similarity=0.279 Sum_probs=59.4
Q ss_pred HHHHHHHHhhhCC-CC-CCcccHHHHHHHHHh---CCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 032995 4 TAVLREWFDRVDS-EK-TGSIAAAQLKHAFAV---GNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (129)
Q Consensus 4 ~~~~~~~F~~~d~-~~-~g~i~~~e~~~~l~~---~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (129)
...+-.+|..|+. ++ +|+|+..+|+.++.. .|...+..++..+++.+|.+++|.|+|++|+.++..+
T Consensus 9 ~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 9 IGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 4567789999997 56 799999999999973 5788999999999999999999999999999988755
No 24
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.22 E-value=1.4e-10 Score=67.36 Aligned_cols=67 Identities=24% Similarity=0.316 Sum_probs=59.4
Q ss_pred HHHHHHHHhhhCC-CC-CCcccHHHHHHHHHh-----CCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 032995 4 TAVLREWFDRVDS-EK-TGSIAAAQLKHAFAV-----GNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (129)
Q Consensus 4 ~~~~~~~F~~~d~-~~-~g~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (129)
...++.+|..+|. ++ +|.|+..+++.++.. +|..++..+++.++..+|.+++|.|+|++|+.++...
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4578899999997 87 699999999999986 4567889999999999999999999999999988754
No 25
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.21 E-value=1.3e-10 Score=63.07 Aligned_cols=61 Identities=23% Similarity=0.391 Sum_probs=55.4
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 032995 8 REWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (129)
Q Consensus 8 ~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (129)
+.+|..+|++++|.|+..++..++...|. +...+..++..++.+++|.|+|.+|+.++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 57899999999999999999999998764 88889999999999999999999999988644
No 26
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.20 E-value=2.4e-10 Score=66.17 Aligned_cols=67 Identities=19% Similarity=0.266 Sum_probs=57.2
Q ss_pred HHHHHHHHhhhC-CCCCC-cccHHHHHHHHHh-C----CCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 032995 4 TAVLREWFDRVD-SEKTG-SIAAAQLKHAFAV-G----NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (129)
Q Consensus 4 ~~~~~~~F~~~d-~~~~g-~i~~~e~~~~l~~-~----~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (129)
...+.++|..|| .+++| +|+..||+.++.. . +...+..++..++..+|.+++|.|+|++|+.++..+
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 456778899999 68898 5999999999976 2 234577899999999999999999999999988765
No 27
>PTZ00184 calmodulin; Provisional
Probab=99.18 E-value=9.7e-10 Score=68.31 Aligned_cols=93 Identities=19% Similarity=0.289 Sum_probs=78.9
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhCC-CCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH------HHHHHHh
Q 032995 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAVGN-LDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL------LKVQHAF 77 (129)
Q Consensus 5 ~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~------~~~~~~f 77 (129)
..+..+|..+|.+++|.|++++|..++.... .......+..+|..+|.+++|.|+..+|..++... ..+..+|
T Consensus 47 ~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 126 (149)
T PTZ00184 47 AELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMI 126 (149)
T ss_pred HHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 4678899999999999999999999988642 23455678899999999999999999999888653 6788899
Q ss_pred hhcc-CCCCcccHHHHHHHHH
Q 032995 78 SDLE-RGRGYLVPDNVYEALV 97 (129)
Q Consensus 78 ~~~d-~~~g~i~~~e~~~~l~ 97 (129)
+.+| +++|.|+.+||..++.
T Consensus 127 ~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 127 READVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HhcCCCCCCcCcHHHHHHHHh
Confidence 9999 6999999999987653
No 28
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.17 E-value=4.2e-10 Score=64.50 Aligned_cols=69 Identities=16% Similarity=0.286 Sum_probs=59.8
Q ss_pred ccHHHHHHHHhhhCC--CCCCcccHHHHHHHHHh-CCCC----CCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 032995 2 ENTAVLREWFDRVDS--EKTGSIAAAQLKHAFAV-GNLD----FSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (129)
Q Consensus 2 ~~~~~~~~~F~~~d~--~~~g~i~~~e~~~~l~~-~~~~----~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (129)
++++.++..|..+|. +++|.|+..++..+++. .|.+ .+..++..++..++.+++|.|+|++|+.++...
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 356788899999999 89999999999999986 4433 458899999999999999999999999988754
No 29
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.15 E-value=3.3e-10 Score=59.05 Aligned_cols=52 Identities=27% Similarity=0.523 Sum_probs=48.7
Q ss_pred CCCcccHHHHHHHHHhCCCC-CCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 032995 18 KTGSIAAAQLKHAFAVGNLD-FSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF 69 (129)
Q Consensus 18 ~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 69 (129)
++|.|+.++|+.++...|.. ++..++..++..+|.+++|.|+|.||+..+..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 46999999999999888998 99999999999999999999999999998864
No 30
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.13 E-value=4.8e-10 Score=59.25 Aligned_cols=61 Identities=39% Similarity=0.548 Sum_probs=56.9
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 032995 7 LREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELN 67 (129)
Q Consensus 7 ~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 67 (129)
+..+|..+|.+++|.|+..++..++...+...+...+..++..++.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5778999999999999999999999999999999999999999999999999999998754
No 31
>PF14658 EF-hand_9: EF-hand domain
Probab=99.09 E-value=7.1e-10 Score=59.37 Aligned_cols=60 Identities=23% Similarity=0.348 Sum_probs=56.6
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHhCCC-CCCHHHHHHHHHHhcCCCC-CcccHHHHHHHHHH
Q 032995 10 WFDRVDSEKTGSIAAAQLKHAFAVGNL-DFSLSVVQQMIRMYDFDRN-GTMSFEEFVELNKF 69 (129)
Q Consensus 10 ~F~~~d~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-~~i~~~ef~~~~~~ 69 (129)
.|..||+++.|.|...++..+|++.+. .+++++++.+.+.+|+++. |.|++++|+.+|+.
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 689999999999999999999999988 8999999999999999988 99999999999863
No 32
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.07 E-value=4.1e-09 Score=68.16 Aligned_cols=91 Identities=21% Similarity=0.364 Sum_probs=79.0
Q ss_pred HHHHhhhCCCCCCc-ccHHHHHHHHHhCCCCCCHH-HHHHHHHHhcCCCCCcccHHHHHHHHHHH-------------HH
Q 032995 8 REWFDRVDSEKTGS-IAAAQLKHAFAVGNLDFSLS-VVQQMIRMYDFDRNGTMSFEEFVELNKFL-------------LK 72 (129)
Q Consensus 8 ~~~F~~~d~~~~g~-i~~~e~~~~l~~~~~~~~~~-~~~~~~~~~d~~~~~~i~~~ef~~~~~~~-------------~~ 72 (129)
.+++..++.+++|. |++++|.+.+.......+.. .+.-.|+.||.+++|.|+.+++..++..+ ..
T Consensus 69 ~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i 148 (187)
T KOG0034|consen 69 DRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDI 148 (187)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHH
Confidence 47888899988888 99999999999887665555 78889999999999999999999887643 45
Q ss_pred HHHHhhhcc-CCCCcccHHHHHHHHHH
Q 032995 73 VQHAFSDLE-RGRGYLVPDNVYEALVK 98 (129)
Q Consensus 73 ~~~~f~~~d-~~~g~i~~~e~~~~l~~ 98 (129)
+...|..+| +++|+|+.+|+.+++..
T Consensus 149 ~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 149 VDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 778899999 89999999999988865
No 33
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.02 E-value=4.2e-09 Score=60.41 Aligned_cols=67 Identities=16% Similarity=0.328 Sum_probs=56.9
Q ss_pred HHHHHHHHhh-hCCCCCC-cccHHHHHHHHHhC-----CCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 032995 4 TAVLREWFDR-VDSEKTG-SIAAAQLKHAFAVG-----NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (129)
Q Consensus 4 ~~~~~~~F~~-~d~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (129)
+..+..+|.. .|.+++| .|+..||+.++... +...++.++..+++.+|.+++|.|+|++|+.++..+
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4578889999 6677765 99999999999975 234567889999999999999999999999988755
No 34
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.02 E-value=6.7e-09 Score=73.99 Aligned_cols=114 Identities=10% Similarity=0.179 Sum_probs=92.9
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHhC-CCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH-------------
Q 032995 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVG-NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK------------- 68 (129)
Q Consensus 3 ~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~------------- 68 (129)
+...+.+-|+.+|+.++|+|+...+..+++.. |.++++..+..-. ...+.+|.|.|..-...+.
T Consensus 462 ~~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kl--a~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slv 539 (631)
T KOG0377|consen 462 HRSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKL--ANGSDDGKVEYKSTLDNLDTEVILEEAGSSLV 539 (631)
T ss_pred hhhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhc--cCCCcCcceehHhHHHHhhhhhHHHHHHhHHH
Confidence 34577889999999999999999999999975 6788877765433 3455677899987766432
Q ss_pred -----HHHHHHHHhhhcc-CCCCcccHHHHHHHHHHc----CCCCCHHHHHHHHHhhchh
Q 032995 69 -----FLLKVQHAFSDLE-RGRGYLVPDNVYEALVKI----GFSLDSPAFYTVCEVCTSI 118 (129)
Q Consensus 69 -----~~~~~~~~f~~~d-~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~l~~~~d~~ 118 (129)
....+..+|..+| +++|.|+.+||+.+++.+ ..+++++++.++.+.+|.+
T Consensus 540 etLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~N 599 (631)
T KOG0377|consen 540 ETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLN 599 (631)
T ss_pred HHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccC
Confidence 2257889999999 899999999999999885 4678999999999999854
No 35
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.95 E-value=7.9e-09 Score=62.01 Aligned_cols=60 Identities=18% Similarity=0.329 Sum_probs=42.3
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 032995 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK 68 (129)
Q Consensus 5 ~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 68 (129)
.++...|..+|.+++|.|+..|+..+. .......+..++..+|.+++|.|+++||+.++.
T Consensus 48 ~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 48 DPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 456677777777777777777777665 234456667777777777777777777777663
No 36
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.93 E-value=3.1e-08 Score=61.64 Aligned_cols=95 Identities=17% Similarity=0.292 Sum_probs=82.1
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHh-CCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH------HHHHHH
Q 032995 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAV-GNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL------LKVQHA 76 (129)
Q Consensus 4 ~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~------~~~~~~ 76 (129)
.+++.++..-+|.+++|.|++++|...+.. ++..-+..++...|+.+|.+.+|.|++.+|+.+...+ +.+++.
T Consensus 68 k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eM 147 (172)
T KOG0028|consen 68 KEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEM 147 (172)
T ss_pred hHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHH
Confidence 356777888889999999999999998775 4555699999999999999999999999999998876 578888
Q ss_pred hhhcc-CCCCcccHHHHHHHHHH
Q 032995 77 FSDLE-RGRGYLVPDNVYEALVK 98 (129)
Q Consensus 77 f~~~d-~~~g~i~~~e~~~~l~~ 98 (129)
...+| +++|-|+.+||..+++.
T Consensus 148 IeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 148 IEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHhcccccccccHHHHHHHHhc
Confidence 88899 79999999999888764
No 37
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.87 E-value=2e-08 Score=57.56 Aligned_cols=67 Identities=15% Similarity=0.234 Sum_probs=56.3
Q ss_pred HHHHHHHHhhhCCC--CCCcccHHHHHHHHH-hCCCCCC----HHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 032995 4 TAVLREWFDRVDSE--KTGSIAAAQLKHAFA-VGNLDFS----LSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (129)
Q Consensus 4 ~~~~~~~F~~~d~~--~~g~i~~~e~~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (129)
...+...|..|+.. ++|.|+..+|+.++. ..+..++ ..+++.++..+|.+++|.|+|++|+.++..+
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 45677889999865 479999999999997 4444455 8999999999999999999999999988744
No 38
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.86 E-value=9.7e-08 Score=61.60 Aligned_cols=102 Identities=20% Similarity=0.225 Sum_probs=81.4
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH--------HHHH
Q 032995 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL--------LKVQ 74 (129)
Q Consensus 3 ~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~--------~~~~ 74 (129)
+++.+..+|..||.+.+|+|+..+++.++.++|-+-+.--+..+++..|.|.+|+|+|.+|+-++... ..+.
T Consensus 97 qIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~~ds~~~ 176 (244)
T KOG0041|consen 97 QIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQEDSGLL 176 (244)
T ss_pred HHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccccchHHH
Confidence 45677889999999999999999999999999999888899999999999999999999999988653 2333
Q ss_pred HHhhh--cc-CCCCcccHHHHHHHHHHcCCCCC
Q 032995 75 HAFSD--LE-RGRGYLVPDNVYEALVKIGFSLD 104 (129)
Q Consensus 75 ~~f~~--~d-~~~g~i~~~e~~~~l~~~~~~~~ 104 (129)
.+-+. .| ...|......|-++--....+++
T Consensus 177 ~LAr~~eVDVskeGV~GAknFFeAKI~~qs~~s 209 (244)
T KOG0041|consen 177 RLARLSEVDVSKEGVSGAKNFFEAKIEAQSPLS 209 (244)
T ss_pred HHHHhcccchhhhhhhhHHHHHHHHHHhhCCCC
Confidence 33333 56 46788877777666555544443
No 39
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.84 E-value=1.9e-08 Score=54.37 Aligned_cols=54 Identities=22% Similarity=0.408 Sum_probs=45.6
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHH----------HHHHHHhhhcc-CCCCcccHHHHHHHH
Q 032995 43 VQQMIRMYDFDRNGTMSFEEFVELNKFL----------LKVQHAFSDLE-RGRGYLVPDNVYEAL 96 (129)
Q Consensus 43 ~~~~~~~~d~~~~~~i~~~ef~~~~~~~----------~~~~~~f~~~d-~~~g~i~~~e~~~~l 96 (129)
++.+|..+|.+++|.|+.+|+...+..+ ..+..+|+.+| +++|.|+.+||..++
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 5788999999999999999999887653 45677799999 799999999998764
No 40
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=4.7e-08 Score=67.10 Aligned_cols=111 Identities=15% Similarity=0.166 Sum_probs=91.0
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHHhCC-CCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-----------HHHHHH
Q 032995 8 REWFDRVDSEKTGSIAAAQLKHAFAVGN-LDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF-----------LLKVQH 75 (129)
Q Consensus 8 ~~~F~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~-----------~~~~~~ 75 (129)
++.|..-|.+++|.++.+||..+|.=-. ..+....++..+...|+|++|.|+++||+.=+-. +..-.+
T Consensus 166 e~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~ 245 (325)
T KOG4223|consen 166 EERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQ 245 (325)
T ss_pred HHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHH
Confidence 5678999999999999999999887432 3456667788888899999999999999986532 234456
Q ss_pred Hhhhcc-CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhchh
Q 032995 76 AFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCEVCTSI 118 (129)
Q Consensus 76 ~f~~~d-~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~ 118 (129)
.+...| +++|+++.+|++.-+..-+......++.-|+...|..
T Consensus 246 F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~d 289 (325)
T KOG4223|consen 246 FFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADED 289 (325)
T ss_pred HHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccC
Confidence 667778 6999999999998888778888899999999988764
No 41
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.72 E-value=2.5e-07 Score=52.94 Aligned_cols=66 Identities=15% Similarity=0.200 Sum_probs=55.2
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhC-----CCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 032995 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVG-----NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (129)
Q Consensus 4 ~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (129)
...+-.+|..|. .+.+.++..||+.++..- ....++..+..+++..|.++||.|+|.||+.++..+
T Consensus 7 i~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 7 MEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 456778899997 445799999999999752 334578889999999999999999999999988765
No 42
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.60 E-value=2.9e-07 Score=73.67 Aligned_cols=91 Identities=19% Similarity=0.415 Sum_probs=79.2
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCC-------CHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH-----
Q 032995 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDF-------SLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL----- 70 (129)
Q Consensus 3 ~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~-------~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~----- 70 (129)
+..+...+|..||.+.+|.++..+|..+|+..|+.+ |..+++.++...|++.+|.|+..+|+.+|...
T Consensus 2251 ~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI 2330 (2399)
T KOG0040|consen 2251 QLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENI 2330 (2399)
T ss_pred HHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccc
Confidence 345777899999999999999999999999998754 44578999999999999999999999998642
Q ss_pred ---HHHHHHhhhccCCCCcccHHHHH
Q 032995 71 ---LKVQHAFSDLERGRGYLVPDNVY 93 (129)
Q Consensus 71 ---~~~~~~f~~~d~~~g~i~~~e~~ 93 (129)
+.+..+|+.++.+..+|+.+++.
T Consensus 2331 ~s~~eIE~AfraL~a~~~yvtke~~~ 2356 (2399)
T KOG0040|consen 2331 LSSEEIEDAFRALDAGKPYVTKEELY 2356 (2399)
T ss_pred cchHHHHHHHHHhhcCCccccHHHHH
Confidence 68999999999878888888764
No 43
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.58 E-value=5.1e-07 Score=55.97 Aligned_cols=65 Identities=22% Similarity=0.353 Sum_probs=59.9
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 032995 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK 68 (129)
Q Consensus 4 ~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 68 (129)
++.+...|..||++++|.|....++++|..-|-..+.+++..+++.+..+..|.++|..|+.++.
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 56788999999999999999999999999998899999999999999999999999999988775
No 44
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=3.2e-07 Score=63.07 Aligned_cols=116 Identities=15% Similarity=0.226 Sum_probs=94.8
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-------------
Q 032995 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF------------- 69 (129)
Q Consensus 3 ~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~------------- 69 (129)
..+++..++..+|.+++|.|+..+++..+.......-.....+-+..+|.+++|.|+|+++...+-.
T Consensus 75 ~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~ 154 (325)
T KOG4223|consen 75 SQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEED 154 (325)
T ss_pred hHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchh
Confidence 3567889999999999999999999999988766666677788888899999999999999875431
Q ss_pred -------HHHHHHHhhhcc-CCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHhhchh
Q 032995 70 -------LLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGF-SLDSPAFYTVCEVCTSI 118 (129)
Q Consensus 70 -------~~~~~~~f~~~d-~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~l~~~~d~~ 118 (129)
+..-++-|+.-| +++|.++++||..+|+.--+ +|.+-.+.+-+...|++
T Consensus 155 ~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn 212 (325)
T KOG4223|consen 155 NEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKN 212 (325)
T ss_pred cHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccC
Confidence 245678899999 79999999999999988643 46777777777777764
No 45
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.57 E-value=1.2e-06 Score=51.56 Aligned_cols=67 Identities=24% Similarity=0.440 Sum_probs=57.9
Q ss_pred ccHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHH
Q 032995 2 ENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFLL 71 (129)
Q Consensus 2 ~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~ 71 (129)
++...+..+|...++ ++|.|+-.+.+.++..+ +++...+.+||...|.+++|.++++||+-.|....
T Consensus 7 ~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S--~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~ 73 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QDGKISGDQAREFFMKS--GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLIN 73 (104)
T ss_dssp CHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHT--TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc--CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHH
Confidence 356688899999886 57999999999999988 57779999999999999999999999999887653
No 46
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.57 E-value=1.3e-07 Score=42.72 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=19.9
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHh
Q 032995 6 VLREWFDRVDSEKTGSIAAAQLKHAFAV 33 (129)
Q Consensus 6 ~~~~~F~~~d~~~~g~i~~~e~~~~l~~ 33 (129)
+++.+|+.+|.+++|+|+++||..+++.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 3567777777777777777777777654
No 47
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.51 E-value=9.6e-07 Score=54.38 Aligned_cols=73 Identities=21% Similarity=0.450 Sum_probs=61.0
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHH-------HHHHHHhhhcc-CCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHH
Q 032995 43 VQQMIRMYDFDRNGTMSFEEFVELNKFL-------LKVQHAFSDLE-RGRGYLVPDNVYEALVKIG-FSLDSPAFYTVCE 113 (129)
Q Consensus 43 ~~~~~~~~d~~~~~~i~~~ef~~~~~~~-------~~~~~~f~~~d-~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~l~~ 113 (129)
-+++...+..++.|.++|++|+...+-+ -++..+|++|| +++++|...++...+..+- ..+|++|+..++.
T Consensus 73 k~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~e 152 (189)
T KOG0038|consen 73 KRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICE 152 (189)
T ss_pred HHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 4667788899999999999999877543 36788999999 9999999999999999874 5689999877665
Q ss_pred hh
Q 032995 114 VC 115 (129)
Q Consensus 114 ~~ 115 (129)
.+
T Consensus 153 kv 154 (189)
T KOG0038|consen 153 KV 154 (189)
T ss_pred HH
Confidence 44
No 48
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.46 E-value=6.9e-07 Score=63.37 Aligned_cols=65 Identities=18% Similarity=0.239 Sum_probs=43.1
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 032995 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELN 67 (129)
Q Consensus 3 ~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 67 (129)
++.++.++|...|.+++|.|+.+|+...++.+|.+++.++++++++..|+++++.|+++++...+
T Consensus 80 ~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ 144 (463)
T KOG0036|consen 80 KELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHL 144 (463)
T ss_pred hHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhh
Confidence 34456666666666666666666666666666666666666666666666666666666665543
No 49
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.42 E-value=1.4e-06 Score=50.60 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHH----HHHHHHhhhcc-CCCCcccHHHHHHHHHHc-----CCCCCHH
Q 032995 41 SVVQQMIRMYDFDRNGTMSFEEFVELNKFL----LKVQHAFSDLE-RGRGYLVPDNVYEALVKI-----GFSLDSP 106 (129)
Q Consensus 41 ~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~----~~~~~~f~~~d-~~~g~i~~~e~~~~l~~~-----~~~~~~~ 106 (129)
..+..+|..+|.+++|.|+..++..++... ..+..+++.+| +++|.|+.+||..++..+ |.+++.+
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~~~~~~ 85 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGYPIPAS 85 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCCCCCcc
Confidence 346778888999999999999999988654 67889999999 699999999999888763 6666543
No 50
>PLN02964 phosphatidylserine decarboxylase
Probab=98.41 E-value=1.8e-06 Score=65.29 Aligned_cols=63 Identities=13% Similarity=0.262 Sum_probs=59.1
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 032995 7 LREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF 69 (129)
Q Consensus 7 ~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 69 (129)
+..+|..+|.+++|.|++.||..++..++...+.+++..+|+.+|.+++|.|+++|+..++..
T Consensus 181 i~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 181 ARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 789999999999999999999999998887788999999999999999999999999998765
No 51
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.40 E-value=2.6e-06 Score=43.24 Aligned_cols=50 Identities=22% Similarity=0.331 Sum_probs=41.2
Q ss_pred cccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 032995 21 SIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (129)
Q Consensus 21 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (129)
.+++.|++.+|+..+..++...+..+|..+|.+++|.+.-+||..+++.+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 36889999999999999999999999999999999999999999988754
No 52
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.39 E-value=6.8e-07 Score=41.02 Aligned_cols=30 Identities=27% Similarity=0.306 Sum_probs=25.1
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHH-hCC
Q 032995 6 VLREWFDRVDSEKTGSIAAAQLKHAFA-VGN 35 (129)
Q Consensus 6 ~~~~~F~~~d~~~~g~i~~~e~~~~l~-~~~ 35 (129)
+++.+|..+|.+++|.|+..||+.+++ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478899999999999999999999998 454
No 53
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.35 E-value=4.7e-06 Score=47.54 Aligned_cols=59 Identities=19% Similarity=0.201 Sum_probs=50.8
Q ss_pred HHHHHHHHHhcC--CCCCcccHHHHHHHHHH-----------HHHHHHHhhhcc-CCCCcccHHHHHHHHHHc
Q 032995 41 SVVQQMIRMYDF--DRNGTMSFEEFVELNKF-----------LLKVQHAFSDLE-RGRGYLVPDNVYEALVKI 99 (129)
Q Consensus 41 ~~~~~~~~~~d~--~~~~~i~~~ef~~~~~~-----------~~~~~~~f~~~d-~~~g~i~~~e~~~~l~~~ 99 (129)
..+..+|..+|. +++|.|+..++..++.. ...+..++..+| +++|.|+.++|..++..+
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 456788999999 89999999999998864 367899999999 689999999998888765
No 54
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.35 E-value=8.7e-07 Score=40.03 Aligned_cols=24 Identities=21% Similarity=0.427 Sum_probs=11.9
Q ss_pred HHHhhhcc-CCCCcccHHHHHHHHH
Q 032995 74 QHAFSDLE-RGRGYLVPDNVYEALV 97 (129)
Q Consensus 74 ~~~f~~~d-~~~g~i~~~e~~~~l~ 97 (129)
+++|+.+| +++|+|+.+||..+++
T Consensus 3 ~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 3 KEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 44455555 3555555555554444
No 55
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.32 E-value=5.3e-06 Score=43.28 Aligned_cols=54 Identities=22% Similarity=0.428 Sum_probs=39.7
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHH------HHHHHHhhhcc-CCCCcccHHHHHHHH
Q 032995 43 VQQMIRMYDFDRNGTMSFEEFVELNKFL------LKVQHAFSDLE-RGRGYLVPDNVYEAL 96 (129)
Q Consensus 43 ~~~~~~~~d~~~~~~i~~~ef~~~~~~~------~~~~~~f~~~d-~~~g~i~~~e~~~~l 96 (129)
+..+|..+|.+.+|.|++.+|..++... ..+..+|+.+| +++|.|+.++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4566777788888888888888777654 56677888887 577888888876544
No 56
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.30 E-value=3.3e-06 Score=51.56 Aligned_cols=61 Identities=25% Similarity=0.369 Sum_probs=52.9
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 032995 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVEL 66 (129)
Q Consensus 5 ~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~ 66 (129)
+.+-+-.+.||++++|.|...+++.+|..+|..++..++..+.... .|.+|.|+|+.|+.-
T Consensus 88 edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~ 148 (152)
T KOG0030|consen 88 EDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKH 148 (152)
T ss_pred HHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHH
Confidence 3455667889999999999999999999999999999999988765 466799999999864
No 57
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.29 E-value=7.9e-06 Score=46.83 Aligned_cols=58 Identities=14% Similarity=0.205 Sum_probs=45.8
Q ss_pred HHHHHHHHhcC-CCCCcccHHHHHHHHHH-H-------HHHHHHhhhcc-CCCCcccHHHHHHHHHHc
Q 032995 42 VVQQMIRMYDF-DRNGTMSFEEFVELNKF-L-------LKVQHAFSDLE-RGRGYLVPDNVYEALVKI 99 (129)
Q Consensus 42 ~~~~~~~~~d~-~~~~~i~~~ef~~~~~~-~-------~~~~~~f~~~d-~~~g~i~~~e~~~~l~~~ 99 (129)
.+..+|..||. +++|.|+..++..++.. + ..+..+++..| +++|.|+.+||..++..+
T Consensus 9 ~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 9 TLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 45678888888 88888888888888765 3 45788888888 788889988887777664
No 58
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.28 E-value=5.4e-06 Score=47.43 Aligned_cols=51 Identities=16% Similarity=0.137 Sum_probs=45.3
Q ss_pred HHHHHHHHHhhhcc--CCCC-cccHHHHHHHHHH-----cCCCCCHHHHHHHHHhhchh
Q 032995 68 KFLLKVQHAFSDLE--RGRG-YLVPDNVYEALVK-----IGFSLDSPAFYTVCEVCTSI 118 (129)
Q Consensus 68 ~~~~~~~~~f~~~d--~~~g-~i~~~e~~~~l~~-----~~~~~~~~~~~~l~~~~d~~ 118 (129)
+.+..++++|+.|| +++| +|+.+||+.+|+. +|...+++++..+++.+|..
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n 63 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSD 63 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCC
Confidence 44578899999997 4899 6999999999999 89999999999999999864
No 59
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.26 E-value=1.4e-06 Score=39.93 Aligned_cols=29 Identities=21% Similarity=0.526 Sum_probs=22.8
Q ss_pred HHHHHhhhcc-CCCCcccHHHHHHHHH-HcC
Q 032995 72 KVQHAFSDLE-RGRGYLVPDNVYEALV-KIG 100 (129)
Q Consensus 72 ~~~~~f~~~d-~~~g~i~~~e~~~~l~-~~~ 100 (129)
.++.+|+.+| +++|+|+.+||..+++ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 3678889999 6899999999998888 454
No 60
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.25 E-value=9.2e-06 Score=43.63 Aligned_cols=56 Identities=20% Similarity=0.139 Sum_probs=43.6
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHH----HHHHHHhhhcc-CCCCcccHHHHHHHHHHc
Q 032995 44 QQMIRMYDFDRNGTMSFEEFVELNKFL----LKVQHAFSDLE-RGRGYLVPDNVYEALVKI 99 (129)
Q Consensus 44 ~~~~~~~d~~~~~~i~~~ef~~~~~~~----~~~~~~f~~~d-~~~g~i~~~e~~~~l~~~ 99 (129)
+.+|..+|.+++|.|+.+++..++... ..+..+|+.+| +++|.|+.+||..++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 457778888888889988888877543 56788888888 688889988887777653
No 61
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.24 E-value=1.1e-05 Score=46.50 Aligned_cols=59 Identities=12% Similarity=0.161 Sum_probs=48.7
Q ss_pred HHHHHHHHHhc-CCCCC-cccHHHHHHHHHH-----------HHHHHHHhhhcc-CCCCcccHHHHHHHHHHc
Q 032995 41 SVVQQMIRMYD-FDRNG-TMSFEEFVELNKF-----------LLKVQHAFSDLE-RGRGYLVPDNVYEALVKI 99 (129)
Q Consensus 41 ~~~~~~~~~~d-~~~~~-~i~~~ef~~~~~~-----------~~~~~~~f~~~d-~~~g~i~~~e~~~~l~~~ 99 (129)
..+..+|..+| .+++| .|+..++..++.. ...+..+++.+| +++|.|+.++|..++..+
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 45788899996 99999 5999999998864 256889999999 789999999998887764
No 62
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.24 E-value=5.6e-06 Score=59.52 Aligned_cols=66 Identities=23% Similarity=0.469 Sum_probs=51.6
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHhC----CCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 032995 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVG----NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK 68 (129)
Q Consensus 3 ~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 68 (129)
+...+..+|+.+|.|++|.|+..||..+.+-+ ....+..++.++.+.+|-++||.|++.||+....
T Consensus 545 ~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 545 NKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred chhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 44567788888888888888888888877754 3456788888888888888888888888876554
No 63
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.19 E-value=3.3e-06 Score=56.39 Aligned_cols=61 Identities=20% Similarity=0.311 Sum_probs=40.1
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhC---CCCCCHHHHHHHHHHhcCCCCCcccHHHHH
Q 032995 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVG---NLDFSLSVVQQMIRMYDFDRNGTMSFEEFV 64 (129)
Q Consensus 4 ~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~---~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~ 64 (129)
.+.++.+|...|.+.+|+|+..++++.+..- .+.-+.++-...|...|++++|.|.|++|.
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEyk 163 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYK 163 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhh
Confidence 4567778888888888888888887776642 111223333445566677777777777774
No 64
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.19 E-value=4.9e-05 Score=54.59 Aligned_cols=92 Identities=18% Similarity=0.364 Sum_probs=66.6
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHhC------CC----------CCCHHHHHHHHH-HhcCCCCCcccHHHHHHHHHH
Q 032995 7 LREWFDRVDSEKTGSIAAAQLKHAFAVG------NL----------DFSLSVVQQMIR-MYDFDRNGTMSFEEFVELNKF 69 (129)
Q Consensus 7 ~~~~F~~~d~~~~g~i~~~e~~~~l~~~------~~----------~~~~~~~~~~~~-~~d~~~~~~i~~~ef~~~~~~ 69 (129)
..-.|..||.|++|.|+++||..+.+-. |. .........+.. .|..++++++++++|...+..
T Consensus 235 F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e~ 314 (489)
T KOG2643|consen 235 FRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQEN 314 (489)
T ss_pred ceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHHH
Confidence 3446888999999999999998877521 11 111111111222 257888999999999999987
Q ss_pred H--HHHHHHhhhccC-CCCcccHHHHHHHHHH
Q 032995 70 L--LKVQHAFSDLER-GRGYLVPDNVYEALVK 98 (129)
Q Consensus 70 ~--~~~~~~f~~~d~-~~g~i~~~e~~~~l~~ 98 (129)
+ +-++--|..+|. .+|.|+..+|...+-.
T Consensus 315 Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~ 346 (489)
T KOG2643|consen 315 LQEEILELEFERFDKGDSGAISEVDFAELLLA 346 (489)
T ss_pred HHHHHHHHHHHHhCcccccccCHHHHHHHHHH
Confidence 6 568888999994 6699999999877754
No 65
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.18 E-value=1.1e-05 Score=48.40 Aligned_cols=59 Identities=15% Similarity=0.156 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHhcCCCCCcccHHHHHHHHH--HHHHHHHHhhhcc-CCCCcccHHHHHHHH
Q 032995 38 FSLSVVQQMIRMYDFDRNGTMSFEEFVELNK--FLLKVQHAFSDLE-RGRGYLVPDNVYEAL 96 (129)
Q Consensus 38 ~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~--~~~~~~~~f~~~d-~~~g~i~~~e~~~~l 96 (129)
.-...+...|..+|.|++|.|+..|+..+.. ....+...|..+| +++|.||.+||..++
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIRLDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHHccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 4456678899999999999999999987641 2356788999999 799999999999888
No 66
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.18 E-value=1.8e-05 Score=45.75 Aligned_cols=58 Identities=14% Similarity=0.174 Sum_probs=46.5
Q ss_pred HHHHHHHHhc-CCCCC-cccHHHHHHHHHHH-----------HHHHHHhhhcc-CCCCcccHHHHHHHHHHc
Q 032995 42 VVQQMIRMYD-FDRNG-TMSFEEFVELNKFL-----------LKVQHAFSDLE-RGRGYLVPDNVYEALVKI 99 (129)
Q Consensus 42 ~~~~~~~~~d-~~~~~-~i~~~ef~~~~~~~-----------~~~~~~f~~~d-~~~g~i~~~e~~~~l~~~ 99 (129)
.+..+|..|| .+++| .|+..|+..++... ..+..+++.+| +++|.|+.+||..++..+
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 3566788887 67887 59999999988542 35888999999 789999999998888775
No 67
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.11 E-value=5.1e-05 Score=57.74 Aligned_cols=117 Identities=20% Similarity=0.239 Sum_probs=100.2
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH---HHHHHHhhhc
Q 032995 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL---LKVQHAFSDL 80 (129)
Q Consensus 4 ~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~---~~~~~~f~~~ 80 (129)
...+..+|...|.+++|.++..+...++......+....+..+++..+...++.+...+|......+ ..+..+|..+
T Consensus 135 ~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rpev~~~f~~~ 214 (746)
T KOG0169|consen 135 EHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRPEVYFLFVQY 214 (746)
T ss_pred HHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCchHHHHHHHH
Confidence 3467889999999999999999999999999888999999999999988889999999998877654 3677777777
Q ss_pred cCCCCcccHHHHHHHHHHcC--CCCCHHHHHHHHHhhchhhH
Q 032995 81 ERGRGYLVPDNVYEALVKIG--FSLDSPAFYTVCEVCTSIFY 120 (129)
Q Consensus 81 d~~~g~i~~~e~~~~l~~~~--~~~~~~~~~~l~~~~d~~~~ 120 (129)
..+.++++.+++.+++...+ ...+.++++++++.+...-+
T Consensus 215 s~~~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~ 256 (746)
T KOG0169|consen 215 SHGKEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKE 256 (746)
T ss_pred hCCCCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhh
Confidence 65699999999999999974 45789999999998865444
No 68
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.10 E-value=2e-05 Score=45.59 Aligned_cols=60 Identities=17% Similarity=0.205 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcC-CC-CCcccHHHHHHHHHH-----------HHHHHHHhhhcc-CCCCcccHHHHHHHHHHcC
Q 032995 41 SVVQQMIRMYDF-DR-NGTMSFEEFVELNKF-----------LLKVQHAFSDLE-RGRGYLVPDNVYEALVKIG 100 (129)
Q Consensus 41 ~~~~~~~~~~d~-~~-~~~i~~~ef~~~~~~-----------~~~~~~~f~~~d-~~~g~i~~~e~~~~l~~~~ 100 (129)
..+..+|..+|. ++ +|.|+..++..++.. ...+..+++.+| +++|.|+.++|..++..++
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 346778888986 76 699999999988764 156888999999 7999999999998887754
No 69
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.08 E-value=2.7e-05 Score=56.16 Aligned_cols=86 Identities=19% Similarity=0.269 Sum_probs=70.1
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHh----cCCCCCcccHHHHHHHHHHH------HHHHHHhhh
Q 032995 10 WFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMY----DFDRNGTMSFEEFVELNKFL------LKVQHAFSD 79 (129)
Q Consensus 10 ~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~----d~~~~~~i~~~ef~~~~~~~------~~~~~~f~~ 79 (129)
.|-.+|.+.+|.|+.+++...-... .+...+.++|... -...+|+++|++|+-++-.+ .-+...|+.
T Consensus 283 kFweLD~Dhd~lidk~~L~ry~d~t---lt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrc 359 (493)
T KOG2562|consen 283 KFWELDTDHDGLIDKEDLKRYGDHT---LTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRC 359 (493)
T ss_pred HHhhhccccccccCHHHHHHHhccc---hhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheee
Confidence 3667899999999999998876643 4577789999832 33467889999999988665 468999999
Q ss_pred cc-CCCCcccHHHHHHHHHH
Q 032995 80 LE-RGRGYLVPDNVYEALVK 98 (129)
Q Consensus 80 ~d-~~~g~i~~~e~~~~l~~ 98 (129)
+| +++|.|+..|++.+.+.
T Consensus 360 lDld~~G~Lt~~el~~fyee 379 (493)
T KOG2562|consen 360 LDLDGDGILTLNELRYFYEE 379 (493)
T ss_pred eeccCCCcccHHHHHHHHHH
Confidence 99 89999999998777665
No 70
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.07 E-value=7.1e-06 Score=35.69 Aligned_cols=24 Identities=21% Similarity=0.517 Sum_probs=18.4
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHH
Q 032995 7 LREWFDRVDSEKTGSIAAAQLKHA 30 (129)
Q Consensus 7 ~~~~F~~~d~~~~g~i~~~e~~~~ 30 (129)
++.+|..+|.+++|.|+..||.++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 456788888888888888888765
No 71
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.04 E-value=2.6e-05 Score=55.96 Aligned_cols=94 Identities=17% Similarity=0.314 Sum_probs=67.0
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhCC-CCC--CHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH----------
Q 032995 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGN-LDF--SLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL---------- 70 (129)
Q Consensus 4 ~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~-~~~--~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~---------- 70 (129)
++-++.-|..+|+..+|.|+..+|..++-... .+. ....++++-+.+..+ +..|+++||.+....+
T Consensus 317 ~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~l~dfd~Al 395 (489)
T KOG2643|consen 317 EEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNNLNDFDIAL 395 (489)
T ss_pred HHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhhhhHHHHHH
Confidence 33455569999999999999999988887643 222 223456666667665 4459999988765322
Q ss_pred -----------------------------HHHHHHhhhcc-CCCCcccHHHHHHHHHH
Q 032995 71 -----------------------------LKVQHAFSDLE-RGRGYLVPDNVYEALVK 98 (129)
Q Consensus 71 -----------------------------~~~~~~f~~~d-~~~g~i~~~e~~~~l~~ 98 (129)
..+.-+|..|| +++|.|+.+||..+++.
T Consensus 396 ~fy~~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~ 453 (489)
T KOG2643|consen 396 RFYHMAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKR 453 (489)
T ss_pred HHHHHcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHH
Confidence 23445788899 79999999999888877
No 72
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.02 E-value=3.5e-05 Score=44.06 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=27.6
Q ss_pred HHHHHHHhhhcc--CC-CCcccHHHHHHHHHH---cCCCCCHHHHHHHHHhhch
Q 032995 70 LLKVQHAFSDLE--RG-RGYLVPDNVYEALVK---IGFSLDSPAFYTVCEVCTS 117 (129)
Q Consensus 70 ~~~~~~~f~~~d--~~-~g~i~~~e~~~~l~~---~~~~~~~~~~~~l~~~~d~ 117 (129)
+..+-.+|..|+ ++ +|+|+.+||+.++.. +|.+++++++.++++.+|.
T Consensus 9 ~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~ 62 (88)
T cd05029 9 IGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDR 62 (88)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC
Confidence 344555666665 23 556666666666642 4555666666666666653
No 73
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=97.98 E-value=8.7e-05 Score=42.52 Aligned_cols=57 Identities=12% Similarity=0.142 Sum_probs=45.1
Q ss_pred HHHHHHH-hcCCCCC-cccHHHHHHHHHHH-----------HHHHHHhhhcc-CCCCcccHHHHHHHHHHc
Q 032995 43 VQQMIRM-YDFDRNG-TMSFEEFVELNKFL-----------LKVQHAFSDLE-RGRGYLVPDNVYEALVKI 99 (129)
Q Consensus 43 ~~~~~~~-~d~~~~~-~i~~~ef~~~~~~~-----------~~~~~~f~~~d-~~~g~i~~~e~~~~l~~~ 99 (129)
+..+|.. ++.++++ .|+..||..++... ..+.++++.+| +++|.|+.+||..++..+
T Consensus 11 l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 11 LIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4667777 4566654 89999999988654 56888999999 799999999998877664
No 74
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.94 E-value=4.4e-05 Score=54.93 Aligned_cols=59 Identities=22% Similarity=0.421 Sum_probs=49.5
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHhhhcc-CCCCcccHHHHHHHHHHc
Q 032995 34 GNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLE-RGRGYLVPDNVYEALVKI 99 (129)
Q Consensus 34 ~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~f~~~d-~~~g~i~~~e~~~~l~~~ 99 (129)
.|...-...+..+|+.+|.+++|.|+..||.. ...+|..+| +++|.|+.+||...+...
T Consensus 327 ~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 327 EGGEAFTHAAQEIFRLYDLDGDGFITREEWLG-------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred hccChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 46677788889999999999999999999864 356799999 799999999999888753
No 75
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.92 E-value=6.6e-06 Score=49.25 Aligned_cols=60 Identities=20% Similarity=0.281 Sum_probs=37.7
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 032995 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVEL 66 (129)
Q Consensus 5 ~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~ 66 (129)
..+.-.|..+|.+++|.|+..|+..+...+ ..+..=+...+..+|.++++.|+..|+..+
T Consensus 54 ~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 54 RVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp HHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 455666888888888888888887666644 344444677777788888888888877653
No 76
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.91 E-value=7.3e-05 Score=53.81 Aligned_cols=53 Identities=19% Similarity=0.208 Sum_probs=40.7
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 032995 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF 69 (129)
Q Consensus 4 ~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 69 (129)
...+...|..+|.+++|.|+..||.. +..+|..+|.|++|.|+++||...+..
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 34667788888888888888888731 466788888888888888888877653
No 77
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.91 E-value=3.6e-05 Score=56.18 Aligned_cols=107 Identities=16% Similarity=0.259 Sum_probs=80.3
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHhCCC------CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH--HHHHHHHh
Q 032995 6 VLREWFDRVDSEKTGSIAAAQLKHAFAVGNL------DFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF--LLKVQHAF 77 (129)
Q Consensus 6 ~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~------~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~--~~~~~~~f 77 (129)
....+|..||..++|.++++++..++.+... +.+.+.++..| .....-.++|.+|..++.. +++.+++|
T Consensus 109 l~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~F---g~~~~r~~ny~~f~Q~lh~~~~E~~~qaf 185 (694)
T KOG0751|consen 109 LFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHF---GDIRKRHLNYAEFTQFLHEFQLEHAEQAF 185 (694)
T ss_pred HHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHh---hhHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999999887533 34455555544 3333456899999888874 47899999
Q ss_pred hhcc-CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 032995 78 SDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCEVC 115 (129)
Q Consensus 78 ~~~d-~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 115 (129)
+..| .++|+|+.-+|+..+-....++....+++.+-.+
T Consensus 186 r~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~v 224 (694)
T KOG0751|consen 186 REKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSV 224 (694)
T ss_pred HHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhh
Confidence 9999 5999999999999998887776666666555444
No 78
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=97.87 E-value=0.00013 Score=45.13 Aligned_cols=91 Identities=12% Similarity=0.191 Sum_probs=67.1
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHhCCCC-CCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH-------H----HHHHH
Q 032995 9 EWFDRVDSEKTGSIAAAQLKHAFAVGNLD-FSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL-------L----KVQHA 76 (129)
Q Consensus 9 ~~F~~~d~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~-------~----~~~~~ 76 (129)
++...|..++.|.+++.+|..++...... +..-.+.-.|+.||-++++.|.-++....+..+ + ....+
T Consensus 75 ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekv 154 (189)
T KOG0038|consen 75 RICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKV 154 (189)
T ss_pred HHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 45566778999999999999998876432 223334445677899999999999988877654 1 23344
Q ss_pred hhhcc-CCCCcccHHHHHHHHHHc
Q 032995 77 FSDLE-RGRGYLVPDNVYEALVKI 99 (129)
Q Consensus 77 f~~~d-~~~g~i~~~e~~~~l~~~ 99 (129)
....| +++|.++..||..+....
T Consensus 155 ieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 155 IEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred HHHhcCCCCCcccHHHHHHHHHhC
Confidence 45567 799999999999887664
No 79
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=97.85 E-value=7e-05 Score=48.68 Aligned_cols=64 Identities=16% Similarity=0.261 Sum_probs=52.0
Q ss_pred HHHHHHHHH-HHHHHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhchhhHHHH
Q 032995 60 FEEFVELNK-FLLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCEVCTSIFYFKL 123 (129)
Q Consensus 60 ~~ef~~~~~-~~~~~~~~f~~~d-~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~~ 123 (129)
|.+|..+-+ .+.....+|+.|| +.+|+|+..|++.+|..+|.+-+.--+..|++.+|..+..|+
T Consensus 87 yteF~eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgkl 152 (244)
T KOG0041|consen 87 YTEFSEFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKL 152 (244)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccch
Confidence 566665443 3578889999999 799999999999999999999888888999999987665554
No 80
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.84 E-value=2.1e-05 Score=34.18 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=12.8
Q ss_pred HHHhhhcc-CCCCcccHHHHHHH
Q 032995 74 QHAFSDLE-RGRGYLVPDNVYEA 95 (129)
Q Consensus 74 ~~~f~~~d-~~~g~i~~~e~~~~ 95 (129)
+.+|+.+| +++|.|+.+|+..+
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 44566666 56666666666543
No 81
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.76 E-value=7.1e-05 Score=38.57 Aligned_cols=43 Identities=26% Similarity=0.461 Sum_probs=25.7
Q ss_pred CCcccHHHHHHHHHHH-------HHHHHHhhhcc-CCCCcccHHHHHHHHH
Q 032995 55 NGTMSFEEFVELNKFL-------LKVQHAFSDLE-RGRGYLVPDNVYEALV 97 (129)
Q Consensus 55 ~~~i~~~ef~~~~~~~-------~~~~~~f~~~d-~~~g~i~~~e~~~~l~ 97 (129)
+|.|+.++|..++..+ ..+..+|..+| +++|.|+.+||..++.
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 4566666666655321 45666666666 5666666666666554
No 82
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.62 E-value=0.00032 Score=51.67 Aligned_cols=67 Identities=27% Similarity=0.483 Sum_probs=57.7
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCC---CCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 032995 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLD---FSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (129)
Q Consensus 3 ~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~---~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (129)
+..+++..|...| +++|+++..++..++.+.+.. ...++++.+....+.+.+|.|+|++|+.++..+
T Consensus 17 El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 17 ELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred HHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 3567889999999 899999999999999987653 357888999999999999999999999976543
No 83
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.57 E-value=0.00097 Score=38.05 Aligned_cols=57 Identities=19% Similarity=0.334 Sum_probs=44.6
Q ss_pred HHHHHHHhcCC--CCCcccHHHHHHHHHH-----------HHHHHHHhhhcc-CCCCcccHHHHHHHHHHc
Q 032995 43 VQQMIRMYDFD--RNGTMSFEEFVELNKF-----------LLKVQHAFSDLE-RGRGYLVPDNVYEALVKI 99 (129)
Q Consensus 43 ~~~~~~~~d~~--~~~~i~~~ef~~~~~~-----------~~~~~~~f~~~d-~~~g~i~~~e~~~~l~~~ 99 (129)
+-.+|..|+.. .+|.|+..++..++.. ...+..+|+.+| +++|.|+.++|..++..+
T Consensus 10 ~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 10 IINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 45567777654 4678999999988852 356889999999 799999999998887764
No 84
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.53 E-value=0.00049 Score=47.98 Aligned_cols=95 Identities=15% Similarity=0.139 Sum_probs=79.1
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhCC-CCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH-----HHHHHHhh
Q 032995 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAVGN-LDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL-----LKVQHAFS 78 (129)
Q Consensus 5 ~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~-----~~~~~~f~ 78 (129)
..+...|..||.+.+|.+++.+-...+..+. ...+...+|-.|++|+.+.||.+.-.++..+++.. -.+.-+|+
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~l~v~~lf~ 338 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEVLRVPVLFP 338 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcceeeccccch
Confidence 4577899999999999999999888887764 45678888999999999999999888888777643 34677899
Q ss_pred hcc-CCCCcccHHHHHHHHHHc
Q 032995 79 DLE-RGRGYLVPDNVYEALVKI 99 (129)
Q Consensus 79 ~~d-~~~g~i~~~e~~~~l~~~ 99 (129)
..+ ..+|+|+..+|+.+....
T Consensus 339 ~i~q~d~~ki~~~~f~~fa~~~ 360 (412)
T KOG4666|consen 339 SIEQKDDPKIYASNFRKFAATE 360 (412)
T ss_pred hhhcccCcceeHHHHHHHHHhC
Confidence 999 589999999999888764
No 85
>PF14658 EF-hand_9: EF-hand domain
Probab=97.49 E-value=0.00031 Score=37.72 Aligned_cols=51 Identities=16% Similarity=0.386 Sum_probs=26.3
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHH-------HHHHHHhhhcc-CCC-CcccHHHHHHHHH
Q 032995 47 IRMYDFDRNGTMSFEEFVELNKFL-------LKVQHAFSDLE-RGR-GYLVPDNVYEALV 97 (129)
Q Consensus 47 ~~~~d~~~~~~i~~~ef~~~~~~~-------~~~~~~f~~~d-~~~-g~i~~~e~~~~l~ 97 (129)
|..||.++.|.|...+++.+++.. ..+..+.+.+| ++. |.|+++.|..+|+
T Consensus 4 F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 4 FDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred hhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 445555555555555555555432 34555555555 333 5555555555544
No 86
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.30 E-value=0.00043 Score=29.90 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=18.2
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHh
Q 032995 7 LREWFDRVDSEKTGSIAAAQLKHAFAV 33 (129)
Q Consensus 7 ~~~~F~~~d~~~~g~i~~~e~~~~l~~ 33 (129)
++.+|..+|.+++|.|+..+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 456677777777777777777766653
No 87
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.23 E-value=0.0052 Score=35.27 Aligned_cols=56 Identities=9% Similarity=0.170 Sum_probs=44.9
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHH-----------HHHHHHhhhcc-CCCCcccHHHHHHHHHHc
Q 032995 43 VQQMIRMYDFDRNGTMSFEEFVELNKFL-----------LKVQHAFSDLE-RGRGYLVPDNVYEALVKI 99 (129)
Q Consensus 43 ~~~~~~~~d~~~~~~i~~~ef~~~~~~~-----------~~~~~~f~~~d-~~~g~i~~~e~~~~l~~~ 99 (129)
+-.+|..|.. .++.++-.||..++... ..+..+++..| +++|.|++.||...+..+
T Consensus 10 lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 10 MMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4557777773 45689999999998642 56889999999 799999999998777664
No 88
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.19 E-value=0.0015 Score=33.17 Aligned_cols=42 Identities=24% Similarity=0.353 Sum_probs=29.6
Q ss_pred ccHHHHHHHHHHH------HHHHHHhhhcc-CCCCcccHHHHHHHHHHc
Q 032995 58 MSFEEFVELNKFL------LKVQHAFSDLE-RGRGYLVPDNVYEALVKI 99 (129)
Q Consensus 58 i~~~ef~~~~~~~------~~~~~~f~~~d-~~~g~i~~~e~~~~l~~~ 99 (129)
++|+|...+++.+ ..+..+|+..| .++|.+..+||..+++.+
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 4566666555532 56788888888 588999988888887754
No 89
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.18 E-value=0.0017 Score=36.47 Aligned_cols=62 Identities=15% Similarity=0.292 Sum_probs=48.3
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHhCCC--CCCHHHHHHHHHHhcCC----CCCcccHHHHHHHHH
Q 032995 6 VLREWFDRVDSEKTGSIAAAQLKHAFAVGNL--DFSLSVVQQMIRMYDFD----RNGTMSFEEFVELNK 68 (129)
Q Consensus 6 ~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~~----~~~~i~~~ef~~~~~ 68 (129)
+|..+|..+.. +.+.++.++|...|..-.. ..+...+..++..+.++ ..+.+++.+|...+.
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHC
Confidence 47889999965 7799999999999987643 35788889998887443 357788888877664
No 90
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.07 E-value=0.004 Score=51.36 Aligned_cols=85 Identities=12% Similarity=0.192 Sum_probs=67.1
Q ss_pred CCCHHH---HHHHHHHhcCCCCCcccHHHHHHHHHHH-------------HHHHHHhhhcc-CCCCcccHHHHHHHHHHc
Q 032995 37 DFSLSV---VQQMIRMYDFDRNGTMSFEEFVELNKFL-------------LKVQHAFSDLE-RGRGYLVPDNVYEALVKI 99 (129)
Q Consensus 37 ~~~~~~---~~~~~~~~d~~~~~~i~~~ef~~~~~~~-------------~~~~~~f~~~d-~~~g~i~~~e~~~~l~~~ 99 (129)
+.+... ..-+|+.||.+.+|.+++++|..|++.+ ..+.+.....| ..+|+|+..+-..+|-.-
T Consensus 2246 GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ 2325 (2399)
T KOG0040|consen 2246 GVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISK 2325 (2399)
T ss_pred CCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhc
Confidence 455444 5668899999999999999999999864 47888889999 589999999977777553
Q ss_pred -CCC-CCHHHHHHHHHhhchhhHH
Q 032995 100 -GFS-LDSPAFYTVCEVCTSIFYF 121 (129)
Q Consensus 100 -~~~-~~~~~~~~l~~~~d~~~~~ 121 (129)
-.+ .++++|+..|+..|.+-.|
T Consensus 2326 ETeNI~s~~eIE~AfraL~a~~~y 2349 (2399)
T KOG0040|consen 2326 ETENILSSEEIEDAFRALDAGKPY 2349 (2399)
T ss_pred ccccccchHHHHHHHHHhhcCCcc
Confidence 233 5888999999998874333
No 91
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.0023 Score=47.10 Aligned_cols=66 Identities=20% Similarity=0.395 Sum_probs=58.2
Q ss_pred ccHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 032995 2 ENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF 69 (129)
Q Consensus 2 ~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 69 (129)
++++-+-.-|+.+.+|.+|.|+-.--++++.++ .++-.++..||...|.+.||.++..||++.+..
T Consensus 228 EQReYYvnQFrtvQpDp~gfisGsaAknFFtKS--klpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 228 EQREYYVNQFRTVQPDPHGFISGSAAKNFFTKS--KLPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred HHHHHHHhhhhcccCCcccccccHHHHhhhhhc--cCchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 355667778999999999999999999999987 567799999999999999999999999997753
No 92
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=0.0086 Score=35.73 Aligned_cols=59 Identities=20% Similarity=0.340 Sum_probs=45.5
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHhC------CC----CCCHHHHHHHHHHh----cCCCCCcccHHHHHH
Q 032995 7 LREWFDRVDSEKTGSIAAAQLKHAFAVG------NL----DFSLSVVQQMIRMY----DFDRNGTMSFEEFVE 65 (129)
Q Consensus 7 ~~~~F~~~d~~~~g~i~~~e~~~~l~~~------~~----~~~~~~~~~~~~~~----d~~~~~~i~~~ef~~ 65 (129)
-..+|...|-+++|.++--++..++... |. -++..++..++... |.+++|.|+|-+|+.
T Consensus 69 qfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK 141 (144)
T KOG4065|consen 69 QFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLK 141 (144)
T ss_pred hhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHh
Confidence 3467899999999999999999999863 22 13566666666554 777889999999875
No 93
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=96.77 E-value=0.023 Score=42.92 Aligned_cols=98 Identities=16% Similarity=0.259 Sum_probs=70.0
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHh-CCCCCCHHHHHHHHHHhcC---C--CCCcccHHHHHHHHHH-------
Q 032995 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAV-GNLDFSLSVVQQMIRMYDF---D--RNGTMSFEEFVELNKF------- 69 (129)
Q Consensus 3 ~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~---~--~~~~i~~~ef~~~~~~------- 69 (129)
-...+.++|...|.+++|.++-.|+...=.. ++.++...++..+-..... + .+..++...|+-+...
T Consensus 193 ~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfiergr~ 272 (625)
T KOG1707|consen 193 CVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIERGRH 272 (625)
T ss_pred HHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHHhccc
Confidence 4568899999999999999999998655443 3456666665554444321 1 2334566666554321
Q ss_pred -----------------------------------------HHHHHHHhhhcc-CCCCcccHHHHHHHHHHcC
Q 032995 70 -----------------------------------------LLKVQHAFSDLE-RGRGYLVPDNVYEALVKIG 100 (129)
Q Consensus 70 -----------------------------------------~~~~~~~f~~~d-~~~g~i~~~e~~~~l~~~~ 100 (129)
.+-+..+|..|| +++|.++..|+..+++.++
T Consensus 273 EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P 345 (625)
T KOG1707|consen 273 ETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAP 345 (625)
T ss_pred cchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCC
Confidence 156899999999 8999999999999999874
No 94
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=96.69 E-value=0.029 Score=41.64 Aligned_cols=97 Identities=18% Similarity=0.280 Sum_probs=69.0
Q ss_pred cHHHHHHHHhhh---CCCCCCcccHHHHHHHHHhC-CCC-CCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH----HHHH
Q 032995 3 NTAVLREWFDRV---DSEKTGSIAAAQLKHAFAVG-NLD-FSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF----LLKV 73 (129)
Q Consensus 3 ~~~~~~~~F~~~---d~~~~g~i~~~e~~~~l~~~-~~~-~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~----~~~~ 73 (129)
+.++++.+|..+ +.++...++.++|.+..--+ +.+ .++...+-+-...|..+||-|+|+||+.+-.. --..
T Consensus 31 ~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~pDal~ 110 (694)
T KOG0751|consen 31 DPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCAPDALF 110 (694)
T ss_pred ChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccCchHHH
Confidence 345667777665 44666788999986554433 333 44444555555567788999999999885432 2456
Q ss_pred HHHhhhcc-CCCCcccHHHHHHHHHHc
Q 032995 74 QHAFSDLE-RGRGYLVPDNVYEALVKI 99 (129)
Q Consensus 74 ~~~f~~~d-~~~g~i~~~e~~~~l~~~ 99 (129)
.-+|+.|| .++|.++.+++.+++...
T Consensus 111 ~~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 111 EVAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred HHHHHHhcccCCCceehHHHHHHHhcc
Confidence 78899999 599999999999999875
No 95
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.66 E-value=0.0036 Score=26.72 Aligned_cols=24 Identities=38% Similarity=0.782 Sum_probs=12.2
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHH
Q 032995 44 QQMIRMYDFDRNGTMSFEEFVELN 67 (129)
Q Consensus 44 ~~~~~~~d~~~~~~i~~~ef~~~~ 67 (129)
+.++..+|.+++|.|++.+|..++
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~ 26 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLL 26 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHH
Confidence 344555555555555555555444
No 96
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.64 E-value=0.0062 Score=47.16 Aligned_cols=65 Identities=18% Similarity=0.407 Sum_probs=57.5
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 032995 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (129)
Q Consensus 4 ~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (129)
...+..+|..+|+..+|+++-..-+.+|-.+ +++...+..||..-|.|+||.++-++|+-.|...
T Consensus 194 klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS--~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~li 258 (1118)
T KOG1029|consen 194 KLKYRQLFNALDKTRSGYLSGQQARSALGQS--GLPQNQLAHIWTLSDVDGDGKLSADEFILAMHLI 258 (1118)
T ss_pred hhHHHHHhhhcccccccccccHHHHHHHHhc--CCchhhHhhheeeeccCCCCcccHHHHHHHHHHH
Confidence 4578899999999999999999999999987 4677888999999999999999999999877543
No 97
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=96.46 E-value=0.02 Score=33.76 Aligned_cols=57 Identities=16% Similarity=0.088 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHH----HHHHHHHhhhcc-CCCCcccHHHHHHHHHHc
Q 032995 42 VVQQMIRMYDFDRNGTMSFEEFVELNKF----LLKVQHAFSDLE-RGRGYLVPDNVYEALVKI 99 (129)
Q Consensus 42 ~~~~~~~~~d~~~~~~i~~~ef~~~~~~----~~~~~~~f~~~d-~~~g~i~~~e~~~~l~~~ 99 (129)
....+|...+. .+|.|+-.+...++.+ .+.+..+|...| +++|+++.+||.-+++-+
T Consensus 11 ~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 11 KYDQIFQSLDP-QDGKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHHHHHCTSS-STTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 35667777775 5799999998887764 378999999999 899999999998777653
No 98
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=96.39 E-value=0.085 Score=33.84 Aligned_cols=95 Identities=19% Similarity=0.165 Sum_probs=61.8
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCC---CCCcccHHHHHHHHHH-----------
Q 032995 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFD---RNGTMSFEEFVELNKF----------- 69 (129)
Q Consensus 4 ~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~---~~~~i~~~ef~~~~~~----------- 69 (129)
.-.|++....||.|++|-|...|-.+.++.+|+++--..+..++-..... ..+.+.-.-|.-.+..
T Consensus 6 ~T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg 85 (174)
T PF05042_consen 6 MTVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSG 85 (174)
T ss_pred ccHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcc
Confidence 34677888899999999999999999999988876444443333221110 1111111111100110
Q ss_pred ---------HHHHHHHhhhcc-CCCCcccHHHHHHHHHH
Q 032995 70 ---------LLKVQHAFSDLE-RGRGYLVPDNVYEALVK 98 (129)
Q Consensus 70 ---------~~~~~~~f~~~d-~~~g~i~~~e~~~~l~~ 98 (129)
.++..++|..++ .+.+.+|..|+.++++.
T Consensus 86 ~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 86 AYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred ccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 167889999998 47788999999888887
No 99
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=96.11 E-value=0.078 Score=33.51 Aligned_cols=65 Identities=11% Similarity=0.152 Sum_probs=48.2
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHhCCC---CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 032995 6 VLREWFDRVDSEKTGSIAAAQLKHAFAVGNL---DFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (129)
Q Consensus 6 ~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (129)
++...|..|...+...++-..|..+++..+. .++...+..+|..+-......|+|++|...+..+
T Consensus 3 ~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 3 AVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 3444455555566678999999999998764 5789999999999866666679999998877643
No 100
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=95.74 E-value=0.05 Score=39.94 Aligned_cols=89 Identities=8% Similarity=0.132 Sum_probs=65.3
Q ss_pred HHHHHHhh----hCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH----H-------
Q 032995 6 VLREWFDR----VDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF----L------- 70 (129)
Q Consensus 6 ~~~~~F~~----~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~----~------- 70 (129)
-+.++|.. +-...+|.+++.+|.-++-+....-++.-++=.|+-+|.+++|.++..+...++.. +
T Consensus 312 ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~ 391 (493)
T KOG2562|consen 312 IVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEA 391 (493)
T ss_pred HHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCc
Confidence 45678882 33456789999999888888766677777888888899999999998876655432 1
Q ss_pred ----HHHHHHhhhcc-CCCCcccHHHHHH
Q 032995 71 ----LKVQHAFSDLE-RGRGYLVPDNVYE 94 (129)
Q Consensus 71 ----~~~~~~f~~~d-~~~g~i~~~e~~~ 94 (129)
..+-+++...- ...|+|+.++|+.
T Consensus 392 l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 392 LPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred ccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 34445555554 4689999999876
No 101
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=95.54 E-value=0.042 Score=38.97 Aligned_cols=95 Identities=15% Similarity=0.211 Sum_probs=69.8
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHH---HHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH--HHHHHHHHhhhc
Q 032995 6 VLREWFDRVDSEKTGSIAAAQLKHA---FAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK--FLLKVQHAFSDL 80 (129)
Q Consensus 6 ~~~~~F~~~d~~~~g~i~~~e~~~~---l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~--~~~~~~~~f~~~ 80 (129)
+|+.||..+=.+.++......+..+ +..+-.+.=...+--+|...|.+.++.++-.|...+.. ....++..|...
T Consensus 212 RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ldknE~CikpFfnsC 291 (434)
T KOG3555|consen 212 RLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELDKNEACIKPFFNSC 291 (434)
T ss_pred HHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhccCchhHHHHHHhhh
Confidence 6778888775555555444444433 22323345567788899999999999999999888764 457899999999
Q ss_pred c-CCCCcccHHHHHHHHHHcC
Q 032995 81 E-RGRGYLVPDNVYEALVKIG 100 (129)
Q Consensus 81 d-~~~g~i~~~e~~~~l~~~~ 100 (129)
| ..+|.|+..|.-..+..-+
T Consensus 292 D~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 292 DTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred cccccCccccchhhhhhccCC
Confidence 9 4899999999887776655
No 102
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=95.43 E-value=0.0047 Score=36.97 Aligned_cols=58 Identities=16% Similarity=0.138 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH----HHHHHHHhhhcc-CCCCcccHHHHHH
Q 032995 37 DFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF----LLKVQHAFSDLE-RGRGYLVPDNVYE 94 (129)
Q Consensus 37 ~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~----~~~~~~~f~~~d-~~~g~i~~~e~~~ 94 (129)
..-...+.-.|..+|.+++|.|+-.|+..+... ...++..++..| +++|.|+..|+..
T Consensus 50 ~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 50 SECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTSTTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 345566788888999999999998887765442 256788889999 7999999998753
No 103
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=95.22 E-value=0.0075 Score=42.30 Aligned_cols=63 Identities=14% Similarity=0.224 Sum_probs=31.4
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHhCCCC-CCHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 032995 6 VLREWFDRVDSEKTGSIAAAQLKHAFAVGNLD-FSLSVVQQMIRMYDFDRNGTMSFEEFVELNK 68 (129)
Q Consensus 6 ~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 68 (129)
.+...|..+|.+.++.|...|++-+-+-+-.. -...=.+++++.+|.++|..|++.|+..++.
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLG 397 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhc
Confidence 34445666666666666666554333322111 1122234455555666666666666655543
No 104
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=95.10 E-value=0.022 Score=40.04 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=49.3
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHH-------HHHHHHHhhhcc-CCCCcccHHHHHHHHHH
Q 032995 41 SVVQQMIRMYDFDRNGTMSFEEFVELNKF-------LLKVQHAFSDLE-RGRGYLVPDNVYEALVK 98 (129)
Q Consensus 41 ~~~~~~~~~~d~~~~~~i~~~ef~~~~~~-------~~~~~~~f~~~d-~~~g~i~~~e~~~~l~~ 98 (129)
..+..+|..||.+.+|.++|.+.+.-+.. ...++-+|+.|+ +.+|.+...+|.-+|+.
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~ 324 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQV 324 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHH
Confidence 45678999999999999999998775532 478999999999 79999999888888877
No 105
>PLN02952 phosphoinositide phospholipase C
Probab=94.98 E-value=0.18 Score=38.67 Aligned_cols=60 Identities=18% Similarity=0.233 Sum_probs=33.2
Q ss_pred CCcccHHHHHHHHHHH--------HHHHHHhhhccCCCCcccHHHHHHHHHHcCC--CCCHHHHHHHHHh
Q 032995 55 NGTMSFEEFVELNKFL--------LKVQHAFSDLERGRGYLVPDNVYEALVKIGF--SLDSPAFYTVCEV 114 (129)
Q Consensus 55 ~~~i~~~ef~~~~~~~--------~~~~~~f~~~d~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~l~~~ 114 (129)
.|.++|++|..+.+.+ ..+..+|..+-.+.+.|+.++|..+|....- ..+.+.+..++..
T Consensus 14 ~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~ 83 (599)
T PLN02952 14 SGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEE 83 (599)
T ss_pred CCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHH
Confidence 4566666666555443 3566666666533356666666666666431 2455555555443
No 106
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=94.96 E-value=0.12 Score=28.89 Aligned_cols=47 Identities=11% Similarity=0.135 Sum_probs=37.3
Q ss_pred HHHHHhhhccCCCCcccHHHHHHHHHHcC-C-CCCHHHHHHHHHhhchh
Q 032995 72 KVQHAFSDLERGRGYLVPDNVYEALVKIG-F-SLDSPAFYTVCEVCTSI 118 (129)
Q Consensus 72 ~~~~~f~~~d~~~g~i~~~e~~~~l~~~~-~-~~~~~~~~~l~~~~d~~ 118 (129)
.+..+|..+..+.+.|+.++|.++|+... . .++...+..++.++...
T Consensus 1 ei~~if~~ys~~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~ 49 (83)
T PF09279_consen 1 EIEEIFRKYSSDKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPD 49 (83)
T ss_dssp HHHHHHHHHCTTSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccc
Confidence 36778888876788999999999998753 3 46899999999998654
No 107
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.94 E-value=0.42 Score=37.70 Aligned_cols=58 Identities=24% Similarity=0.397 Sum_probs=42.5
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 032995 8 REWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK 68 (129)
Q Consensus 8 ~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 68 (129)
...|..+. .+.|+|+-.+-+.++-.+| ++...+.+||...|.|+||+++..+|.-.|+
T Consensus 19 ~~qF~~Lk-p~~gfitg~qArnfflqS~--LP~~VLaqIWALsDldkDGrmdi~EfSIAmk 76 (1118)
T KOG1029|consen 19 DAQFGQLK-PGQGFITGDQARNFFLQSG--LPTPVLAQIWALSDLDKDGRMDIREFSIAMK 76 (1118)
T ss_pred HHHHhccC-CCCCccchHhhhhhHHhcC--CChHHHHHHHHhhhcCccccchHHHHHHHHH
Confidence 34455443 4458888888888888774 4556778888888888888888888876554
No 108
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=94.79 E-value=0.09 Score=39.76 Aligned_cols=67 Identities=18% Similarity=0.252 Sum_probs=59.5
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 032995 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (129)
Q Consensus 4 ~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (129)
....+.-|..+|.++.|+++..+..++++..+.+++...+..+....+.+.+|.+...+|..++..+
T Consensus 592 ~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 592 FLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHH
Confidence 4456677999999999999999999999999889999999999999999989999999998887654
No 109
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=94.77 E-value=0.062 Score=38.13 Aligned_cols=60 Identities=15% Similarity=0.209 Sum_probs=51.2
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 032995 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK 68 (129)
Q Consensus 5 ~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 68 (129)
.++..+|.++|.+.+|.++..|++.+-. ...+.=++..|..+|...+|.|+-.|++.+..
T Consensus 250 ds~gWMFnklD~N~Dl~Ld~sEl~~I~l----dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~ 309 (434)
T KOG3555|consen 250 DSLGWMFNKLDTNYDLLLDQSELRAIEL----DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQ 309 (434)
T ss_pred hhhhhhhhccccccccccCHHHhhhhhc----cCchhHHHHHHhhhcccccCccccchhhhhhc
Confidence 4678899999999999999999986654 45566689999999999999999999998764
No 110
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=94.69 E-value=0.17 Score=32.46 Aligned_cols=74 Identities=18% Similarity=0.241 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHH------------------------------------HHHHHHhhhcc---
Q 032995 41 SVVQQMIRMYDFDRNGTMSFEEFVELNKFL------------------------------------LKVQHAFSDLE--- 81 (129)
Q Consensus 41 ~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~------------------------------------~~~~~~f~~~d--- 81 (129)
..+|+-+..+|.|+||.|...|=..-.+.+ ..+...-.--|
T Consensus 7 T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~ 86 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGA 86 (174)
T ss_pred cHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccc
Confidence 347888888999999998755433222111 22222211112
Q ss_pred -CCCCcccHHHHHHHHHHcC----CCCCHHHHHHHHHh
Q 032995 82 -RGRGYLVPDNVYEALVKIG----FSLDSPAFYTVCEV 114 (129)
Q Consensus 82 -~~~g~i~~~e~~~~l~~~~----~~~~~~~~~~l~~~ 114 (129)
+.+|...++.|.+++...+ ..++..|+..|++.
T Consensus 87 YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 87 YDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 2568888889999998864 24788888888874
No 111
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=94.32 E-value=0.38 Score=38.39 Aligned_cols=91 Identities=15% Similarity=0.183 Sum_probs=66.8
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCH-HH-HHHH---HHHhcCCCCCcccHHHHHHHHHHH-------H
Q 032995 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSL-SV-VQQM---IRMYDFDRNGTMSFEEFVELNKFL-------L 71 (129)
Q Consensus 4 ~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~-~~-~~~~---~~~~d~~~~~~i~~~ef~~~~~~~-------~ 71 (129)
..++...|..++....|.++.+++..+|-.+|...-. +. ++.+ +...+...-|.+++.+|...+.+. .
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~~~~ 825 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLDTEL 825 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhhcHHH
Confidence 3578889999999888999999999999999887653 22 3333 333455555889999999887642 4
Q ss_pred HHHHHhhhccCCCCcccHHHHHH
Q 032995 72 KVQHAFSDLERGRGYLVPDNVYE 94 (129)
Q Consensus 72 ~~~~~f~~~d~~~g~i~~~e~~~ 94 (129)
.+...|+.+-+..-+|..+|+..
T Consensus 826 r~i~s~~d~~ktk~~lL~eEL~~ 848 (890)
T KOG0035|consen 826 RAILAFEDWAKTKAYLLLEELVR 848 (890)
T ss_pred HHHHHHHHHHcchhHHHHHHHHh
Confidence 56666666664444788888876
No 112
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=93.64 E-value=0.17 Score=42.43 Aligned_cols=57 Identities=19% Similarity=0.386 Sum_probs=48.3
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 032995 9 EWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVEL 66 (129)
Q Consensus 9 ~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~ 66 (129)
+.|..|||++.|-|+..+|..++..- ...+..++.-+..-...+.+..++|.+|+.-
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~r 4117 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDR 4117 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHH
Confidence 45778899999999999999999843 3577888888888888888889999999874
No 113
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=93.45 E-value=0.55 Score=32.04 Aligned_cols=60 Identities=13% Similarity=0.149 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHhcCCCCCcccHHHHHHHHHH---------HHHHHHHhhhcc-CCCCcccHHHHHHHHHH
Q 032995 39 SLSVVQQMIRMYDFDRNGTMSFEEFVELNKF---------LLKVQHAFSDLE-RGRGYLVPDNVYEALVK 98 (129)
Q Consensus 39 ~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~---------~~~~~~~f~~~d-~~~g~i~~~e~~~~l~~ 98 (129)
+...+..+|+..|.+.++.|+-.+...-+.. .+.-+..|+..| +++|.|+.+|++--+..
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFla 168 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLA 168 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHh
Confidence 4566788999999999999999987664321 245566788889 79999999998644433
No 114
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=92.71 E-value=0.33 Score=37.25 Aligned_cols=70 Identities=21% Similarity=0.257 Sum_probs=50.4
Q ss_pred ccHHHHHHHHHhCC-CCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH------HHHHHHHhhhcc-CCCCcccHHHH
Q 032995 22 IAAAQLKHAFAVGN-LDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF------LLKVQHAFSDLE-RGRGYLVPDNV 92 (129)
Q Consensus 22 i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~------~~~~~~~f~~~d-~~~g~i~~~e~ 92 (129)
+++..+..+++.+. +..+...++.+|...|.+.+|.++|.+++..+.. .+.++-+|+.+| +++ ....++.
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 44445555555432 2245556788999999999999999999987754 378999999999 666 7666655
No 115
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=92.01 E-value=4.1 Score=33.04 Aligned_cols=104 Identities=15% Similarity=0.198 Sum_probs=72.7
Q ss_pred CCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHh--cCCCCCc-----ccHHHHHHHHHHH---HHHHHHhhhcc-CCC
Q 032995 16 SEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMY--DFDRNGT-----MSFEEFVELNKFL---LKVQHAFSDLE-RGR 84 (129)
Q Consensus 16 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~--d~~~~~~-----i~~~ef~~~~~~~---~~~~~~f~~~d-~~~ 84 (129)
.+..|.|....+.+.+..- ..+..++.....+ ..+++.. .+++.|..++.++ ..+..+|..+. +..
T Consensus 159 vn~~grip~knI~k~F~~~---k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcpR~eie~iF~ki~~~~k 235 (1189)
T KOG1265|consen 159 VNFEGRIPVKNIIKTFSAD---KKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCPRPEIEEIFRKISGKKK 235 (1189)
T ss_pred ccccccccHHHHHHHhhcC---CchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCCchhHHHHHHHhccCCC
Confidence 4667888888777777642 3334455555544 2223233 4566667777665 67999999998 666
Q ss_pred CcccHHHHHHHHHHc----------CCCCCHHHHHHHHHhhchhhHHH
Q 032995 85 GYLVPDNVYEALVKI----------GFSLDSPAFYTVCEVCTSIFYFK 122 (129)
Q Consensus 85 g~i~~~e~~~~l~~~----------~~~~~~~~~~~l~~~~d~~~~~~ 122 (129)
-++|.++|..+++.- ..+.++..+..+++.+.....+.
T Consensus 236 pylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a 283 (1189)
T KOG1265|consen 236 PYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNA 283 (1189)
T ss_pred ccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhh
Confidence 999999999999873 34578999999999998764443
No 116
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=91.44 E-value=0.88 Score=32.15 Aligned_cols=76 Identities=14% Similarity=0.193 Sum_probs=44.0
Q ss_pred cHHHHHHHHHhC-CCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH----------------------HHHHHHHhhh
Q 032995 23 AAAQLKHAFAVG-NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF----------------------LLKVQHAFSD 79 (129)
Q Consensus 23 ~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~----------------------~~~~~~~f~~ 79 (129)
|..+++.++..+ |..++.-.-...|...|.+++|.++=.+.-++... ++--..+.+.
T Consensus 225 SkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~ 304 (442)
T KOG3866|consen 225 SKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQ 304 (442)
T ss_pred cHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 445555555554 23333333344555557777777776666665432 1334456777
Q ss_pred cc-CCCCcccHHHHHHHHHH
Q 032995 80 LE-RGRGYLVPDNVYEALVK 98 (129)
Q Consensus 80 ~d-~~~g~i~~~e~~~~l~~ 98 (129)
.| +.++.||.+||...-..
T Consensus 305 vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 305 VDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred cccchhhhhhHHHHHhhhhh
Confidence 78 67888888888655443
No 117
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=89.41 E-value=3.6 Score=32.50 Aligned_cols=63 Identities=22% Similarity=0.321 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH------HHHHHHhhhcc-CCCCcccHHHHHHHHHHcCC
Q 032995 39 SLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL------LKVQHAFSDLE-RGRGYLVPDNVYEALVKIGF 101 (129)
Q Consensus 39 ~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~------~~~~~~f~~~d-~~~g~i~~~e~~~~l~~~~~ 101 (129)
....+..++...|.+.+|.+++.+-..+...+ ..++.+|+..+ .++|.+...++.+.....+.
T Consensus 134 ~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~ 203 (746)
T KOG0169|consen 134 REHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTK 203 (746)
T ss_pred HHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhcc
Confidence 45557888889999999999999988877654 56778888888 58999999998888777643
No 118
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=88.49 E-value=0.93 Score=34.25 Aligned_cols=61 Identities=10% Similarity=0.217 Sum_probs=38.7
Q ss_pred CCHHHHHH---HHHHhcCCCCCcccHHHHHHHHHHH---------HHHHHHhhhcc-CCCCcccHHHHHHHHHHc
Q 032995 38 FSLSVVQQ---MIRMYDFDRNGTMSFEEFVELNKFL---------LKVQHAFSDLE-RGRGYLVPDNVYEALVKI 99 (129)
Q Consensus 38 ~~~~~~~~---~~~~~d~~~~~~i~~~ef~~~~~~~---------~~~~~~f~~~d-~~~g~i~~~e~~~~l~~~ 99 (129)
.+..++.. -|...| +++|.|+..+....+... +.++++....+ +.+|.|++++|..++-.+
T Consensus 13 ~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 13 LTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred ccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 44455443 444456 777888888777665432 56666666666 577777777776655443
No 119
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.85 E-value=0.26 Score=39.47 Aligned_cols=63 Identities=22% Similarity=0.355 Sum_probs=54.9
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 032995 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK 68 (129)
Q Consensus 4 ~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 68 (129)
...+.++|...|.+++|.|+..+....+.. .+++...+.++|...+..+.|.+++.+|...+.
T Consensus 282 ~~~~~~if~q~d~~~dG~I~s~~~~~~f~~--~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~ 344 (847)
T KOG0998|consen 282 KQKYSKIFSQVDKDNDGSISSNEARNIFLP--FGLSKPRLAHVWLLADTQNTGTLSKDEFALAMH 344 (847)
T ss_pred HHHHHHHHHhccccCCCccccccccccccc--CCCChhhhhhhhhhcchhccCcccccccchhhh
Confidence 456777899999999999999999988887 567888899999999999999999998877654
No 120
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=87.25 E-value=1.1 Score=34.33 Aligned_cols=62 Identities=15% Similarity=0.269 Sum_probs=44.0
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCC-C-HHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 032995 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDF-S-LSVVQQMIRMYDFDRNGTMSFEEFVELNKF 69 (129)
Q Consensus 4 ~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~-~-~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 69 (129)
.+-+..+|..+|.+++|.++-.++..++......+ . ..+.... -....|.+++.-|++.|..
T Consensus 314 ~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t----~~~~~G~ltl~g~l~~WsL 377 (625)
T KOG1707|consen 314 YRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDST----VKNERGWLTLNGFLSQWSL 377 (625)
T ss_pred HHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccc----eecccceeehhhHHHHHHH
Confidence 34678899999999999999999999999874432 0 0000000 1225788999999987753
No 121
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=87.15 E-value=0.8 Score=35.31 Aligned_cols=57 Identities=18% Similarity=0.250 Sum_probs=48.0
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHH
Q 032995 6 VLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEF 63 (129)
Q Consensus 6 ~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef 63 (129)
-+.++|+.+|.+.+|.+++.++...|..+..+-..+.+.-+|+.++.+++ ..+-++.
T Consensus 556 ~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 556 FLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 35688999999999999999999999988776667778888999988877 6666665
No 122
>PLN02952 phosphoinositide phospholipase C
Probab=86.94 E-value=9.9 Score=29.59 Aligned_cols=80 Identities=13% Similarity=0.116 Sum_probs=56.0
Q ss_pred CCCCcccHHHHHHHHHhCCC--CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH--------HHHHHHhhhcc-----
Q 032995 17 EKTGSIAAAQLKHAFAVGNL--DFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL--------LKVQHAFSDLE----- 81 (129)
Q Consensus 17 ~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~--------~~~~~~f~~~d----- 81 (129)
++.|.+++.+|..+.+.+-. ..+..++..+|..+..++ +.++.++|..++... .....++..+-
T Consensus 12 ~~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~ 90 (599)
T PLN02952 12 NDSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHH 90 (599)
T ss_pred ccCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccc
Confidence 34689999999888776532 347889999999996544 679999999988653 23344443321
Q ss_pred ---CCCCcccHHHHHHHHH
Q 032995 82 ---RGRGYLVPDNVYEALV 97 (129)
Q Consensus 82 ---~~~g~i~~~e~~~~l~ 97 (129)
.+.+.++.+.|..+|-
T Consensus 91 ~~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 91 VTRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred cccccccCcCHHHHHHHHc
Confidence 1234588888888875
No 123
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=86.90 E-value=2.1 Score=24.29 Aligned_cols=30 Identities=3% Similarity=0.088 Sum_probs=22.9
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 032995 86 YLVPDNVYEALVKIGFSLDSPAFYTVCEVC 115 (129)
Q Consensus 86 ~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 115 (129)
.||..||..+.+..|.+++...++.+++.+
T Consensus 14 ~iT~~eLlkyskqy~i~it~~QA~~I~~~l 43 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISITKKQAEQIANIL 43 (85)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 477788888888888888877777777654
No 124
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=86.23 E-value=4.6 Score=23.18 Aligned_cols=61 Identities=11% Similarity=0.176 Sum_probs=37.1
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhC-------C----CCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 032995 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAVG-------N----LDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK 68 (129)
Q Consensus 5 ~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~-------~----~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 68 (129)
++++-+|+.+ .|++|.++...|..+|+.. | ++..+..++..|.... .+..|+.++|+.-+.
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~ 74 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLM 74 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHH
Confidence 5788899998 6788999999999988862 2 1235555666665542 344578888877554
No 125
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.32 E-value=3.8 Score=31.00 Aligned_cols=53 Identities=15% Similarity=0.131 Sum_probs=38.7
Q ss_pred HHHhcCCCCCcccHHHHHHHHHH----HHHHHHHhhhcc-CCCCcccHHHHHHHHHHc
Q 032995 47 IRMYDFDRNGTMSFEEFVELNKF----LLKVQHAFSDLE-RGRGYLVPDNVYEALVKI 99 (129)
Q Consensus 47 ~~~~d~~~~~~i~~~ef~~~~~~----~~~~~~~f~~~d-~~~g~i~~~e~~~~l~~~ 99 (129)
|+....|-.|.|+=.--.++..+ +..+..+|+..| +.+|.++..||..+++..
T Consensus 237 FrtvQpDp~gfisGsaAknFFtKSklpi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 237 FRTVQPDPHGFISGSAAKNFFTKSKLPIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred hhcccCCcccccccHHHHhhhhhccCchHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 34456667777764443333332 478999999999 899999999999988763
No 126
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=84.65 E-value=1.1 Score=24.43 Aligned_cols=28 Identities=25% Similarity=0.509 Sum_probs=22.9
Q ss_pred HHHHHHhhhccCCCCcccHHHHHHHHHH
Q 032995 71 LKVQHAFSDLERGRGYLVPDNVYEALVK 98 (129)
Q Consensus 71 ~~~~~~f~~~d~~~g~i~~~e~~~~l~~ 98 (129)
+++.++|+.+..+.++||..+|++.|..
T Consensus 6 eqv~~aFr~lA~~KpyVT~~dLr~~l~p 33 (69)
T PF08726_consen 6 EQVEEAFRALAGGKPYVTEEDLRRSLTP 33 (69)
T ss_dssp HHHHHHHHHHCTSSSCEEHHHHHHHS-C
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHcCc
Confidence 5788999999768899999999987654
No 127
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=83.53 E-value=1.6 Score=23.58 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=21.6
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhhchh
Q 032995 87 LVPDNVYEALVKIGFSLDSPAFYTVCEVCTSI 118 (129)
Q Consensus 87 i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~ 118 (129)
++.+++..++...|..+|..++..+++.-|..
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~ 45 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEK 45 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCc
Confidence 34456677777777777777777777765543
No 128
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=81.41 E-value=2.8 Score=24.02 Aligned_cols=27 Identities=19% Similarity=0.143 Sum_probs=11.2
Q ss_pred HHHHHhhhccCCCCcccHHHHHHHHHH
Q 032995 72 KVQHAFSDLERGRGYLVPDNVYEALVK 98 (129)
Q Consensus 72 ~~~~~f~~~d~~~g~i~~~e~~~~l~~ 98 (129)
+.+.+|+.+.+.+|.++...|..+|+.
T Consensus 4 KyRylFslisd~~g~~~~~~l~~lL~d 30 (90)
T PF09069_consen 4 KYRYLFSLISDSNGCMDQRKLGLLLHD 30 (90)
T ss_dssp HHHHHHHHHS-TTS-B-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence 344444444444455555444444443
No 129
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=81.19 E-value=1.5 Score=26.28 Aligned_cols=32 Identities=9% Similarity=0.225 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 032995 37 DFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK 68 (129)
Q Consensus 37 ~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 68 (129)
.+++++.+.+|..+..+..|.|.|.+|+.-+.
T Consensus 3 iLtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 3 ILTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp ---HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred cccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 46788999999999999999999999998665
No 130
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.37 E-value=1.6 Score=31.66 Aligned_cols=62 Identities=24% Similarity=0.260 Sum_probs=43.7
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHH-HHHHHHHhcCCCCCcccHHHHHH
Q 032995 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSV-VQQMIRMYDFDRNGTMSFEEFVE 65 (129)
Q Consensus 4 ~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~-~~~~~~~~d~~~~~~i~~~ef~~ 65 (129)
.+.+++.|..+|+.++|+|+..-++.++...+...++.. +...-...|+..-|.|-..+|..
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg 370 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLG 370 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccc
Confidence 357899999999999999999999999999875554443 33333334666556555555544
No 131
>PLN02222 phosphoinositide phospholipase C 2
Probab=80.33 E-value=11 Score=29.25 Aligned_cols=61 Identities=10% Similarity=0.151 Sum_probs=46.8
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhCCC--CCCHHHHHHHHHHhcC-CCCCcccHHHHHHHH
Q 032995 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAVGNL--DFSLSVVQQMIRMYDF-DRNGTMSFEEFVELN 67 (129)
Q Consensus 5 ~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~-~~~~~i~~~ef~~~~ 67 (129)
.++..+|..+.. ++.++.++|..+|..... ..+.+.++.++..+.. ...+.++++.|...+
T Consensus 25 ~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL 88 (581)
T PLN02222 25 REIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYL 88 (581)
T ss_pred HHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHh
Confidence 578899999864 479999999999998754 3467778888887632 234568999998866
No 132
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=79.21 E-value=2.1 Score=30.54 Aligned_cols=57 Identities=12% Similarity=-0.006 Sum_probs=40.5
Q ss_pred HHHHHHHhcCCCCCcccH---HHHHHHHHHH----HHHHHHhhhcc-CCCCcccHHHHHHHHHHc
Q 032995 43 VQQMIRMYDFDRNGTMSF---EEFVELNKFL----LKVQHAFSDLE-RGRGYLVPDNVYEALVKI 99 (129)
Q Consensus 43 ~~~~~~~~d~~~~~~i~~---~ef~~~~~~~----~~~~~~f~~~d-~~~g~i~~~e~~~~l~~~ 99 (129)
+.-.|..+|.+.++.|+- ..|..++... ...+..|+..| +++..|+.+|++..|...
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 344566678888887763 3444444332 56777888889 799999999998887654
No 133
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=78.91 E-value=13 Score=23.14 Aligned_cols=30 Identities=3% Similarity=-0.123 Sum_probs=12.6
Q ss_pred cccHHHHHHHHHH-cCCCCCHHHHHHHHHhh
Q 032995 86 YLVPDNVYEALVK-IGFSLDSPAFYTVCEVC 115 (129)
Q Consensus 86 ~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~ 115 (129)
.|+.+-|+.+|+. +...++++.+..||..+
T Consensus 48 ~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF 78 (138)
T PF14513_consen 48 PIDYEGFKLFMKTYLEVDLPEDLCQHLFLSF 78 (138)
T ss_dssp EE-HHHHHHHHHHHTT-S--HHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4555555555544 33344555555555444
No 134
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.66 E-value=12 Score=22.64 Aligned_cols=58 Identities=16% Similarity=0.206 Sum_probs=32.6
Q ss_pred CCCHHHHHH-HHHHhcCCCCCcccHHHHHHHHHHH--------------------HHHHHHhhhcc-CCCCcccHHHHHH
Q 032995 37 DFSLSVVQQ-MIRMYDFDRNGTMSFEEFVELNKFL--------------------LKVQHAFSDLE-RGRGYLVPDNVYE 94 (129)
Q Consensus 37 ~~~~~~~~~-~~~~~d~~~~~~i~~~ef~~~~~~~--------------------~~~~~~f~~~d-~~~g~i~~~e~~~ 94 (129)
.+++++++- .|++.|.++++.++=-+.+..+... +.+..+.+.-| +++|+|+..||..
T Consensus 62 ~mtpeqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK 141 (144)
T KOG4065|consen 62 KMTPEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLK 141 (144)
T ss_pred hCCHHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHh
Confidence 345555543 4555677777777766666554322 22333334444 4777777777643
No 135
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=78.60 E-value=7.5 Score=22.17 Aligned_cols=33 Identities=9% Similarity=0.031 Sum_probs=27.9
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhhchhh
Q 032995 87 LVPDNVYEALVKIGFSLDSPAFYTVCEVCTSIF 119 (129)
Q Consensus 87 i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~ 119 (129)
|+.+++..+.+.....+++++++.+...+...+
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~l~~il 33 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGDLDKIL 33 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 577888888888899999999999988887753
No 136
>PLN02230 phosphoinositide phospholipase C 4
Probab=78.51 E-value=16 Score=28.50 Aligned_cols=63 Identities=14% Similarity=0.200 Sum_probs=45.6
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCC---CCCHHHHHHHHHHhc-------CCCCCcccHHHHHHHH
Q 032995 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNL---DFSLSVVQQMIRMYD-------FDRNGTMSFEEFVELN 67 (129)
Q Consensus 4 ~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~~~~~~d-------~~~~~~i~~~ef~~~~ 67 (129)
..++..+|..+..++ +.++.++|..+|..... ..+...++.++..+- .-..+.++.+.|...+
T Consensus 28 ~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL 100 (598)
T PLN02230 28 VADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYL 100 (598)
T ss_pred cHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHH
Confidence 358899999996444 89999999999998753 236666777776541 1123468999988865
No 137
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=78.48 E-value=9.7 Score=30.89 Aligned_cols=122 Identities=23% Similarity=0.181 Sum_probs=70.1
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHH-HHHHHhcCCCCCcccHHHHHHHHHHH---H--HHHHHh-h
Q 032995 6 VLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQ-QMIRMYDFDRNGTMSFEEFVELNKFL---L--KVQHAF-S 78 (129)
Q Consensus 6 ~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~-~~~~~~d~~~~~~i~~~ef~~~~~~~---~--~~~~~f-~ 78 (129)
.+++.+...|......|+..++...|......++..... .-+.. +.-..+.++|.+|-.+++.+ . .+-.-| +
T Consensus 145 wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~te-d~~~k~dlsf~~f~~ly~~lmfs~~~a~l~e~~~ 223 (1267)
T KOG1264|consen 145 WLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTE-DGARKDDLSFEQFHLLYKKLMFSQQKAILLEFKK 223 (1267)
T ss_pred HHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhH-hhhccccccHHHHHHHHHHHhhccchhhhhcccc
Confidence 344555566665667799999999999887766544432 33332 23345679999999988764 0 111111 1
Q ss_pred h--cc---C-CCCcccHHHHHHHHHHcCCCCC---HHHHHHHHHhhchhhHHHHhhhhc
Q 032995 79 D--LE---R-GRGYLVPDNVYEALVKIGFSLD---SPAFYTVCEVCTSIFYFKLKEIFL 128 (129)
Q Consensus 79 ~--~d---~-~~g~i~~~e~~~~l~~~~~~~~---~~~~~~l~~~~d~~~~~~~~~~~~ 128 (129)
. .. . ..-.++..+|.++|..-..... -..++.+++.+-....-...|+.+
T Consensus 224 ~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl 282 (1267)
T KOG1264|consen 224 DFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYL 282 (1267)
T ss_pred hhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcce
Confidence 1 11 1 2256889999999987532221 124555555554444444444444
No 138
>PLN02228 Phosphoinositide phospholipase C
Probab=78.09 E-value=17 Score=28.18 Aligned_cols=62 Identities=13% Similarity=0.223 Sum_probs=46.3
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCC--CCCHHHHHHHHHHhcCC----CCCcccHHHHHHHH
Q 032995 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNL--DFSLSVVQQMIRMYDFD----RNGTMSFEEFVELN 67 (129)
Q Consensus 4 ~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~~----~~~~i~~~ef~~~~ 67 (129)
..++..+|..+.. ++.++.++|..+|..... ..+...+..++..+... ..+.++.+.|...+
T Consensus 23 ~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl 90 (567)
T PLN02228 23 PVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYL 90 (567)
T ss_pred cHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHh
Confidence 4578899998853 368999999999998743 34567788888887543 33568889888765
No 139
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.50 E-value=4.5 Score=29.42 Aligned_cols=39 Identities=8% Similarity=0.272 Sum_probs=32.3
Q ss_pred HHHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCHHHHH
Q 032995 71 LKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFY 109 (129)
Q Consensus 71 ~~~~~~f~~~d-~~~g~i~~~e~~~~l~~~~~~~~~~~~~ 109 (129)
++++++|+.+| .++|+|+-+-++.++...+..+++.+.-
T Consensus 309 ~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v 348 (449)
T KOG2871|consen 309 EQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYV 348 (449)
T ss_pred HHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHH
Confidence 78999999999 5888999999999999988666544433
No 140
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=76.37 E-value=13 Score=28.15 Aligned_cols=79 Identities=14% Similarity=0.139 Sum_probs=52.8
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHH---hcC----CC-CCcccHHHHHHHHH------------
Q 032995 9 EWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRM---YDF----DR-NGTMSFEEFVELNK------------ 68 (129)
Q Consensus 9 ~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~---~d~----~~-~~~i~~~ef~~~~~------------ 68 (129)
-+|..+...+++.+++..|..+|+.+|...++..+..++.. ++. +. .+.++-+.|..++.
T Consensus 90 LLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~sSI~lvSqALrk 169 (622)
T KOG0506|consen 90 LLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFSSIVLVSQALRK 169 (622)
T ss_pred hhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhccchhHHHHHHhc
Confidence 46888877778999999999999999987665555555544 342 22 34677777776542
Q ss_pred ---------HHHHHHHHhhhcc-CCCCcc
Q 032995 69 ---------FLLKVQHAFSDLE-RGRGYL 87 (129)
Q Consensus 69 ---------~~~~~~~~f~~~d-~~~g~i 87 (129)
...++.++|+..- -..|.+
T Consensus 170 qmVIPdw~~Fts~I~tIFEscke~seG~v 198 (622)
T KOG0506|consen 170 QMVIPDWEEFTSHIDTIFESCKESSEGKV 198 (622)
T ss_pred CccCCcHHHHHHHHHHHHHHHHhcCCccH
Confidence 1156777777766 244543
No 141
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=76.29 E-value=9.8 Score=20.35 Aligned_cols=41 Identities=2% Similarity=0.006 Sum_probs=32.4
Q ss_pred HHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 032995 75 HAFSDLERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCEVC 115 (129)
Q Consensus 75 ~~f~~~d~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 115 (129)
..|+.+=..+-.|+.+-++.++..+|...|+..+..+.+.+
T Consensus 20 ~~~~k~l~~NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 20 KYMEKQLKENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 33333334577899999999999999999999999988765
No 142
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.25 E-value=7.1 Score=28.76 Aligned_cols=56 Identities=21% Similarity=0.386 Sum_probs=44.1
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHH
Q 032995 7 LREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVE 65 (129)
Q Consensus 7 ~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~ 65 (129)
+.++|..+.+ -+|+|+-..-+..+..+ .+++..+-++|+..|.|.+|.++-++|.-
T Consensus 446 yde~fy~l~p-~~gk~sg~~ak~~mv~s--klpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 446 YDEIFYTLSP-VNGKLSGRNAKKEMVKS--KLPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred hHhhhhcccc-cCceeccchhHHHHHhc--cCchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 4567777654 35888888877777654 67888899999999999999999999864
No 143
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=75.87 E-value=8.1 Score=19.17 Aligned_cols=33 Identities=15% Similarity=0.315 Sum_probs=25.3
Q ss_pred CCCccc-HHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 032995 83 GRGYLV-PDNVYEALVKIGFSLDSPAFYTVCEVC 115 (129)
Q Consensus 83 ~~g~i~-~~e~~~~l~~~~~~~~~~~~~~l~~~~ 115 (129)
..|.|+ ..++.+.|...|+.++++.++.+++.+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 567776 455666677789999999999988764
No 144
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=75.48 E-value=10 Score=21.60 Aligned_cols=33 Identities=9% Similarity=0.045 Sum_probs=28.9
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHhhchh
Q 032995 86 YLVPDNVYEALVKIGFSLDSPAFYTVCEVCTSI 118 (129)
Q Consensus 86 ~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~ 118 (129)
.|+.+++..+.+.+...+++++...+...+...
T Consensus 2 ~i~~e~i~~la~La~l~l~~ee~~~~~~~l~~i 34 (95)
T PRK00034 2 AITREEVKHLAKLARLELSEEELEKFAGQLNKI 34 (95)
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 378889999999999999999999998888765
No 145
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=72.63 E-value=29 Score=24.08 Aligned_cols=96 Identities=9% Similarity=0.148 Sum_probs=54.5
Q ss_pred CCCcccHHHHHHHHHhC--CCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH-----HHH----HHHhhhccCCCCc
Q 032995 18 KTGSIAAAQLKHAFAVG--NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL-----LKV----QHAFSDLERGRGY 86 (129)
Q Consensus 18 ~~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~-----~~~----~~~f~~~d~~~g~ 86 (129)
-||.++-.|.. ..+.+ ...++......+...+........++.+|+..+... +.+ ..+|..-- -+|.
T Consensus 68 ADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~~~~r~~l~~~lL~~l~~vA~-ADG~ 145 (267)
T PRK09430 68 AKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRSVCGGRFDLLRMFLEIQIQAAF-ADGS 145 (267)
T ss_pred cCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-hcCC
Confidence 36888888886 33332 134555553333333434444458888888876531 222 22222222 5788
Q ss_pred ccHHHH---HHHHHHcCCCCCHHHHHHHHHhhch
Q 032995 87 LVPDNV---YEALVKIGFSLDSPAFYTVCEVCTS 117 (129)
Q Consensus 87 i~~~e~---~~~l~~~~~~~~~~~~~~l~~~~d~ 117 (129)
++..|- +++...+| ++..++..+...+..
T Consensus 146 l~~~E~~~L~~Ia~~Lg--is~~df~~~~~~~~~ 177 (267)
T PRK09430 146 LHPNERQVLYVIAEELG--FSRFQFDQLLRMMQA 177 (267)
T ss_pred CCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHH
Confidence 999873 44444444 778888888776553
No 146
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=71.16 E-value=7.7 Score=24.15 Aligned_cols=33 Identities=12% Similarity=0.083 Sum_probs=26.6
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHhhchh
Q 032995 86 YLVPDNVYEALVKIGFSLDSPAFYTVCEVCTSI 118 (129)
Q Consensus 86 ~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~ 118 (129)
..|+++.+.+...+..++|++++..+++.++..
T Consensus 26 IWT~eDV~~~a~gme~~lTd~E~~aVL~~I~~~ 58 (139)
T PF07128_consen 26 IWTREDVRALADGMEYNLTDDEARAVLARIGDI 58 (139)
T ss_pred EecHHHHHHHHhcCCCCCCHHHHHHHHHHHhcC
Confidence 357788888878788888999999888888764
No 147
>PRK00523 hypothetical protein; Provisional
Probab=70.50 E-value=16 Score=20.06 Aligned_cols=42 Identities=10% Similarity=0.126 Sum_probs=33.9
Q ss_pred HHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 032995 74 QHAFSDLERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCEVC 115 (129)
Q Consensus 74 ~~~f~~~d~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 115 (129)
+..|+.+=..+-.|+.+-++.++..+|...|+..+.++.+.+
T Consensus 27 rk~~~k~l~~NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 27 KKMFKKQIRENPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred HHHHHHHHHHCcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 344444444678899999999999999999999999998876
No 148
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=70.01 E-value=15 Score=21.25 Aligned_cols=34 Identities=9% Similarity=0.040 Sum_probs=29.4
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHhhchhh
Q 032995 86 YLVPDNVYEALVKIGFSLDSPAFYTVCEVCTSIF 119 (129)
Q Consensus 86 ~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~ 119 (129)
.|+.+++..+.+.....+++++.+.+...+..++
T Consensus 2 ~i~~e~v~~la~LarL~lseee~e~~~~~l~~Il 35 (96)
T COG0721 2 AIDREEVKHLAKLARLELSEEELEKFATQLEDIL 35 (96)
T ss_pred ccCHHHHHHHHHHhhcccCHHHHHHHHHHHHHHH
Confidence 5788999999988889999999999999888753
No 149
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=69.02 E-value=19 Score=20.45 Aligned_cols=48 Identities=15% Similarity=0.070 Sum_probs=34.6
Q ss_pred CcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 032995 20 GSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELN 67 (129)
Q Consensus 20 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 67 (129)
..++..||...-+..+.+++...+..+...+-...-...+-++=..++
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~ll 60 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLL 60 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 468889999999999999999999998888754443444444433333
No 150
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=68.48 E-value=16 Score=19.49 Aligned_cols=38 Identities=18% Similarity=0.179 Sum_probs=29.1
Q ss_pred hhCCCCCCcccHHHHHHHHHh----------CCCCCCHHHHHHHHHHh
Q 032995 13 RVDSEKTGSIAAAQLKHAFAV----------GNLDFSLSVVQQMIRMY 50 (129)
Q Consensus 13 ~~d~~~~g~i~~~e~~~~l~~----------~~~~~~~~~~~~~~~~~ 50 (129)
.||...+.+|+.+++..++.. .|..++...+.+++..-
T Consensus 11 LYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~iL~QIi~e~ 58 (64)
T PF07879_consen 11 LYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSILLQIILEE 58 (64)
T ss_pred cccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHHHHHHHHHH
Confidence 588999999999999999986 35566776666655443
No 151
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=68.48 E-value=68 Score=26.65 Aligned_cols=96 Identities=8% Similarity=0.068 Sum_probs=67.1
Q ss_pred cHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH----------------HHHHHHhhhcc-C---
Q 032995 23 AAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL----------------LKVQHAFSDLE-R--- 82 (129)
Q Consensus 23 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~----------------~~~~~~f~~~d-~--- 82 (129)
+.+.|..++..+ .+..+++.||..+..++...++.++++..++.. ..+..+.+.|. +
T Consensus 206 ~~e~f~~~l~kl---cpR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~ 282 (1189)
T KOG1265|consen 206 TLEKFYRLLNKL---CPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDN 282 (1189)
T ss_pred cHHHHHHHHHhc---CCchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhh
Confidence 444555666554 345678999999988887889999888887642 56777888775 2
Q ss_pred -CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhchhhHH
Q 032995 83 -GRGYLVPDNVYEALVKIGFSLDSPAFYTVCEVCTSIFYF 121 (129)
Q Consensus 83 -~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~ 121 (129)
..|.|+.+=|.++|-.-...+...+--.+...+|+.+.+
T Consensus 283 a~~gqms~dgf~ryl~gdEn~i~a~~~l~l~~dM~qPl~h 322 (1189)
T KOG1265|consen 283 AEKGQMSTDGFVRYLMGDENAIVALDKLDLVTDMDQPLSH 322 (1189)
T ss_pred hhccccchhhhHHHhhCCccccccHHHHHhhhhhccchhh
Confidence 579999988876664433556666666777777766443
No 152
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=68.39 E-value=13 Score=18.18 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=21.0
Q ss_pred HHHHHHHhhhcc--C-CCCcccHHHHHHHHHH
Q 032995 70 LLKVQHAFSDLE--R-GRGYLVPDNVYEALVK 98 (129)
Q Consensus 70 ~~~~~~~f~~~d--~-~~g~i~~~e~~~~l~~ 98 (129)
+..+..+|..|. + ....++..||+..+..
T Consensus 5 i~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 5 IETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 455677787776 3 4567888888888876
No 153
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=68.33 E-value=22 Score=20.85 Aligned_cols=58 Identities=16% Similarity=0.118 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHH---HHHHHHHhhhcc---C-CCCcccHHHHHHHHHHc
Q 032995 40 LSVVQQMIRMYDFDRNGTMSFEEFVELNKF---LLKVQHAFSDLE---R-GRGYLVPDNVYEALVKI 99 (129)
Q Consensus 40 ~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~---~~~~~~~f~~~d---~-~~g~i~~~e~~~~l~~~ 99 (129)
...++.-|..+.. +|.++-..|..|+.- .+-..++|..+- . ....|+.+|+++++..+
T Consensus 29 W~~VE~RFd~La~--dG~L~rs~Fg~CIGM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 29 WKEVEKRFDKLAK--DGLLPRSDFGECIGMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHHHHH-B--TTBEEGGGHHHHHT--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc--CCcccHHHHHHhcCCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 5556666666644 567777777666531 233445554443 2 34667777777777664
No 154
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=68.27 E-value=11 Score=24.67 Aligned_cols=37 Identities=19% Similarity=0.211 Sum_probs=25.4
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhchh
Q 032995 82 RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCEVCTSI 118 (129)
Q Consensus 82 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~ 118 (129)
+.+|++..+++.+.+..-+..++.+++.++++.-++.
T Consensus 28 d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K~ 64 (186)
T PF01885_consen 28 DPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDKQ 64 (186)
T ss_dssp -TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS-
T ss_pred CCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCCC
Confidence 5789999999988888888888999999999887754
No 155
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=67.80 E-value=23 Score=21.00 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=34.2
Q ss_pred hhCCCCCCcccHHHHHHHHHh----------CCCCCCHHHHHHHHHHhcCCCCCcccH
Q 032995 13 RVDSEKTGSIAAAQLKHAFAV----------GNLDFSLSVVQQMIRMYDFDRNGTMSF 60 (129)
Q Consensus 13 ~~d~~~~g~i~~~e~~~~l~~----------~~~~~~~~~~~~~~~~~d~~~~~~i~~ 60 (129)
.||...+.+|+.++++.++.. .|..++...+.+++.....++...++-
T Consensus 11 LYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~ 68 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLST 68 (107)
T ss_pred ccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCH
Confidence 588999999999999999986 355677777766666554444443443
No 156
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=66.28 E-value=16 Score=21.92 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=26.3
Q ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHhhch
Q 032995 88 VPDNVYEALVKIGFSLDSPAFYTVCEVCTS 117 (129)
Q Consensus 88 ~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~ 117 (129)
+.+|++.++..-+..++++++++++.-.++
T Consensus 81 t~~ElRsIla~e~~~~s~E~l~~Ildiv~K 110 (114)
T COG1460 81 TPDELRSILAKERVMLSDEELDKILDIVDK 110 (114)
T ss_pred CHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Confidence 567999999999999999999999887664
No 157
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=64.84 E-value=18 Score=19.32 Aligned_cols=37 Identities=16% Similarity=-0.016 Sum_probs=29.7
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhchh
Q 032995 82 RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCEVCTSI 118 (129)
Q Consensus 82 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~ 118 (129)
..++.++..++.+.+...|+.++.+.+.--++.++..
T Consensus 9 ~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~ 45 (66)
T PF08461_consen 9 ESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERD 45 (66)
T ss_pred HcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHC
Confidence 3567788888888888888888888888888877653
No 158
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=64.73 E-value=16 Score=19.91 Aligned_cols=26 Identities=8% Similarity=0.088 Sum_probs=12.7
Q ss_pred HHHHhhhccC-CCCcccHHHHHHHHHH
Q 032995 73 VQHAFSDLER-GRGYLVPDNVYEALVK 98 (129)
Q Consensus 73 ~~~~f~~~d~-~~g~i~~~e~~~~l~~ 98 (129)
+..+...|++ ..+.|+++||.+.++.
T Consensus 27 ~~~l~~~Y~~~k~~kIsR~~fvr~lR~ 53 (70)
T PF12174_consen 27 MDLLQKHYEEFKKKKISREEFVRKLRQ 53 (70)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3333344432 4555555555555555
No 159
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=64.67 E-value=13 Score=19.56 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=21.3
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHH
Q 032995 86 YLVPDNVYEALVKIGFSLDSPAFYTV 111 (129)
Q Consensus 86 ~i~~~e~~~~l~~~~~~~~~~~~~~l 111 (129)
.|+.++|..+|+.....++.+++...
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 58899999999999989998887654
No 160
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=63.33 E-value=48 Score=24.92 Aligned_cols=95 Identities=14% Similarity=0.079 Sum_probs=60.1
Q ss_pred CCCcccHHHHHHHHHhC---C-CCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH-------HHHHHHhhhccCCCCc
Q 032995 18 KTGSIAAAQLKHAFAVG---N-LDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL-------LKVQHAFSDLERGRGY 86 (129)
Q Consensus 18 ~~g~i~~~e~~~~l~~~---~-~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~-------~~~~~~f~~~d~~~g~ 86 (129)
++......+|+.+..-. + -.+.-+.++.|.+.+|.|.+|.|+.+|=-.+++.- +.-.+.|.. .+..
T Consensus 41 gds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~---dD~~ 117 (575)
T KOG4403|consen 41 GDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHG---DDKH 117 (575)
T ss_pred CCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhccC---Cccc
Confidence 34445555554443322 2 23566778999999999999999988655555422 121222322 3566
Q ss_pred ccHHHHHHHHHHc-CCCCCHHHHHHHHHhh
Q 032995 87 LVPDNVYEALVKI-GFSLDSPAFYTVCEVC 115 (129)
Q Consensus 87 i~~~e~~~~l~~~-~~~~~~~~~~~l~~~~ 115 (129)
|+.+++.+++..- -.+++.+++.+++-.+
T Consensus 118 ItVedLWeaW~~Sev~nWT~e~tvqWLi~~ 147 (575)
T KOG4403|consen 118 ITVEDLWEAWKESEVHNWTNERTVQWLIND 147 (575)
T ss_pred eeHHHHHHHHHhhhhhcchHHHHHHHHHHh
Confidence 9999999998874 4668877776666544
No 161
>PRK01844 hypothetical protein; Provisional
Probab=62.38 E-value=24 Score=19.33 Aligned_cols=42 Identities=2% Similarity=0.010 Sum_probs=33.9
Q ss_pred HHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 032995 74 QHAFSDLERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCEVC 115 (129)
Q Consensus 74 ~~~f~~~d~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 115 (129)
+..|+.+=..+-.|+.+-++.++..+|...|+..+.++.+.+
T Consensus 26 rk~~~k~lk~NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 26 RKYMMNYLQKNPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 344444444677899999999999999999999999998876
No 162
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=62.18 E-value=12 Score=20.80 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=19.7
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q 032995 83 GRGYLVPDNVYEALVKIGFSLDSPAFYTVCEVCT 116 (129)
Q Consensus 83 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d 116 (129)
..|+||.+++..+|... .++.+.+..++..+.
T Consensus 18 ~~G~lT~~eI~~~L~~~--~~~~e~id~i~~~L~ 49 (82)
T PF03979_consen 18 KKGYLTYDEINDALPED--DLDPEQIDEIYDTLE 49 (82)
T ss_dssp HHSS-BHHHHHHH-S-S-----HHHHHHHHHHHH
T ss_pred hcCcCCHHHHHHHcCcc--CCCHHHHHHHHHHHH
Confidence 57888888888887743 377788888877664
No 163
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=62.08 E-value=32 Score=20.63 Aligned_cols=36 Identities=8% Similarity=0.096 Sum_probs=32.0
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhchh
Q 032995 83 GRGYLVPDNVYEALVKIGFSLDSPAFYTVCEVCTSI 118 (129)
Q Consensus 83 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~ 118 (129)
++..+|.+++..+|+..|..+.+..+..+++.+..+
T Consensus 16 G~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~GK 51 (112)
T PTZ00373 16 GNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEGK 51 (112)
T ss_pred CCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcCC
Confidence 566799999999999999999999999999988654
No 164
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=62.00 E-value=19 Score=23.41 Aligned_cols=37 Identities=22% Similarity=0.109 Sum_probs=27.3
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhchh
Q 032995 82 RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCEVCTSI 118 (129)
Q Consensus 82 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~ 118 (129)
+.+|++..+++.+.++.-+..++.+.+.+++..=|++
T Consensus 29 d~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~K~ 65 (179)
T PRK00819 29 DEEGWVDIDALIEALAKAYKWVTRELLEAVVESDDKG 65 (179)
T ss_pred CCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCCCc
Confidence 5778888888877776655667888888887776653
No 165
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=61.87 E-value=20 Score=23.48 Aligned_cols=37 Identities=14% Similarity=0.176 Sum_probs=23.8
Q ss_pred CCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Q 032995 15 DSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYD 51 (129)
Q Consensus 15 d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 51 (129)
..+.+|+++..++...+..-+...+.+.+..++...+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 3578899999999999988777778888888887644
No 166
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=61.60 E-value=7.3 Score=33.80 Aligned_cols=66 Identities=11% Similarity=0.012 Sum_probs=47.6
Q ss_pred ccHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCC----CCHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 032995 2 ENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLD----FSLSVVQQMIRMYDFDRNGTMSFEEFVELNK 68 (129)
Q Consensus 2 ~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~----~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 68 (129)
.+.+...++|..+|++..|.|...++...++.+..+ .+... +.+...+....++.|++.+-+..+.
T Consensus 1414 ~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~ 1483 (1592)
T KOG2301|consen 1414 DDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALT 1483 (1592)
T ss_pred ccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHH
Confidence 456788899999999999999999999999986332 22221 3333334555778899998766554
No 167
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.00 E-value=39 Score=21.24 Aligned_cols=91 Identities=12% Similarity=0.159 Sum_probs=58.3
Q ss_pred HHHhhhCCCCCCcccHHHHH---HHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-------HHHHHHHhh
Q 032995 9 EWFDRVDSEKTGSIAAAQLK---HAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF-------LLKVQHAFS 78 (129)
Q Consensus 9 ~~F~~~d~~~~g~i~~~e~~---~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~-------~~~~~~~f~ 78 (129)
-+|..... +|.++..|.. .++.. .++++..++..+......-+...+++..|...+.+ ++-+...|+
T Consensus 34 Llf~Vm~A--DG~v~~~E~~a~r~il~~-~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e~R~eli~~mwe 110 (148)
T COG4103 34 LLFHVMEA--DGTVSESEREAFRAILKE-NFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEEQRLELIGLMWE 110 (148)
T ss_pred HHHHHHhc--ccCcCHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45666544 4666666654 44443 36788899999888876666677999999887752 345555555
Q ss_pred hccCCCCcccHHH---HHHHHHHcCCCC
Q 032995 79 DLERGRGYLVPDN---VYEALVKIGFSL 103 (129)
Q Consensus 79 ~~d~~~g~i~~~e---~~~~l~~~~~~~ 103 (129)
+.. -+|.++..| ++++...+|...
T Consensus 111 Ia~-ADg~l~e~Ed~vi~RvAeLLgV~~ 137 (148)
T COG4103 111 IAY-ADGELDESEDHVIWRVAELLGVSP 137 (148)
T ss_pred HHH-ccccccHHHHHHHHHHHHHhCCCH
Confidence 554 456677665 455555566443
No 168
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.92 E-value=26 Score=19.12 Aligned_cols=40 Identities=5% Similarity=0.036 Sum_probs=31.8
Q ss_pred HhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 032995 76 AFSDLERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCEVC 115 (129)
Q Consensus 76 ~f~~~d~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 115 (129)
.++.+=..+-.|+.+-++.++..+|-..|+..++++.+.+
T Consensus 28 ~~~k~lk~NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i 67 (71)
T COG3763 28 QMKKQLKDNPPINEEMIRMMMAQMGQKPSEKKINQVMRSI 67 (71)
T ss_pred HHHHHHhhCCCCCHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 3333334677899999999999999999999999988765
No 169
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=60.48 E-value=52 Score=23.82 Aligned_cols=100 Identities=11% Similarity=0.127 Sum_probs=58.8
Q ss_pred CCCCCcccHHHHHHHHHhCCCCC----------CHHHHHHHHHHhcCCCC-Cc--------ccHHHHHHHHHHHHHHHHH
Q 032995 16 SEKTGSIAAAQLKHAFAVGNLDF----------SLSVVQQMIRMYDFDRN-GT--------MSFEEFVELNKFLLKVQHA 76 (129)
Q Consensus 16 ~~~~g~i~~~e~~~~l~~~~~~~----------~~~~~~~~~~~~d~~~~-~~--------i~~~ef~~~~~~~~~~~~~ 76 (129)
.+..+.++..+...++...+.+. +...++.++......+. |. ...--|.........++.+
T Consensus 136 ~~~~~~lp~~eR~~lLe~lg~~~v~~~~~~~~~d~~~l~~~l~~~~~~G~EGVVlK~~~~~~~~~Ky~t~~~~~~di~~~ 215 (342)
T cd07894 136 KNTGRPLPVEERRELLEKYGLPTVRLFGEFTADEIEELKEIIRELDKEGREGVVLKDPDMRVPPLKYTTSYSNCSDIRYA 215 (342)
T ss_pred cCCCCCCCHHHHHHHHHhcCCCCcceEEEEecCCHHHHHHHHHHHHHCCCceEEEeccccccCcceeecCCCCcHHHHHH
Confidence 34356788999999999876532 23556666666543322 21 1122233333445778888
Q ss_pred hhhccC-CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 032995 77 FSDLER-GRGYLVPDNVYEALVKIGFSLDSPAFYTVCEVC 115 (129)
Q Consensus 77 f~~~d~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 115 (129)
|+.+-+ +.+++...=++.++...-...++++.++.....
T Consensus 216 ~~~~~d~~~~~~~~Ri~R~~~~~~E~~~~~~~~~~~~~~l 255 (342)
T cd07894 216 FRYPFDLGRDFFFSRIVREGFQSVELGESEEELEERALEL 255 (342)
T ss_pred hhhccccCchHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 887754 777776666666666655556655655554443
No 170
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=60.21 E-value=22 Score=25.47 Aligned_cols=89 Identities=11% Similarity=0.164 Sum_probs=53.1
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHhC----CCCCC-H-----------HHHHHHHHHhcCCCCCcccHHHHHHHHHHH--
Q 032995 9 EWFDRVDSEKTGSIAAAQLKHAFAVG----NLDFS-L-----------SVVQQMIRMYDFDRNGTMSFEEFVELNKFL-- 70 (129)
Q Consensus 9 ~~F~~~d~~~~g~i~~~e~~~~l~~~----~~~~~-~-----------~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~-- 70 (129)
..|...|.+++|.++-.++..++..- .-+.+ . ..-..+++..|.+.+.-|+.++|++-..+.
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~kef 327 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNKEF 327 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhccc
Confidence 46777888999999999998777642 11111 1 112446667899999999999999865432
Q ss_pred HHHHHHhhhccCCCCcccHHHHHHHHHH
Q 032995 71 LKVQHAFSDLERGRGYLVPDNVYEALVK 98 (129)
Q Consensus 71 ~~~~~~f~~~d~~~g~i~~~e~~~~l~~ 98 (129)
....+-|...+ ....-+-+|++++=+.
T Consensus 328 ~~p~e~WEtl~-q~~~yTeEEL~~fE~e 354 (442)
T KOG3866|consen 328 NPPKEEWETLG-QKKVYTEEELQQFERE 354 (442)
T ss_pred CCcchhhhhhc-ccccccHHHHHHHHHH
Confidence 12223333333 2233455555544433
No 171
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=59.35 E-value=4.4 Score=26.92 Aligned_cols=22 Identities=14% Similarity=0.442 Sum_probs=9.9
Q ss_pred HHHHHHhcCCCCCcccHHHHHH
Q 032995 44 QQMIRMYDFDRNGTMSFEEFVE 65 (129)
Q Consensus 44 ~~~~~~~d~~~~~~i~~~ef~~ 65 (129)
...|..+|.+++|.|..+++..
T Consensus 225 ~~f~e~cd~~nd~~ial~ew~~ 246 (259)
T KOG4004|consen 225 TRFFETCDLDNDKYIALDEWAG 246 (259)
T ss_pred hhhhhcccCCCCCceeHHHhhc
Confidence 3344444444444444444433
No 172
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=58.31 E-value=25 Score=20.95 Aligned_cols=31 Identities=10% Similarity=0.221 Sum_probs=24.4
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhhch
Q 032995 87 LVPDNVYEALVKIGFSLDSPAFYTVCEVCTS 117 (129)
Q Consensus 87 i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~ 117 (129)
-+.+|++.++......+++++++++++.+.+
T Consensus 79 ~~~dElrai~~~~~~~~~~e~l~~ILd~l~k 109 (112)
T PRK14981 79 ETRDELRAIFAKERYTLSPEELDEILDIVKK 109 (112)
T ss_pred CCHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 3467888888888888899999988876643
No 173
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=57.65 E-value=32 Score=22.40 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=29.0
Q ss_pred CCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Q 032995 16 SEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYD 51 (129)
Q Consensus 16 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 51 (129)
.+.+|+++.+++...++.-+...+.+.+..+...-+
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~ 63 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDD 63 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCC
Confidence 478899999999999886566688888888886543
No 174
>PLN02230 phosphoinositide phospholipase C 4
Probab=57.13 E-value=41 Score=26.40 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=12.8
Q ss_pred CHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 032995 39 SLSVVQQMIRMYDFDRNGTMSFEEFVELNK 68 (129)
Q Consensus 39 ~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 68 (129)
+..++..+|..+..++ +.++.++|..++.
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~ 55 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMA 55 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHH
Confidence 3344455555543222 3444444444443
No 175
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=57.03 E-value=18 Score=25.99 Aligned_cols=94 Identities=14% Similarity=0.205 Sum_probs=50.5
Q ss_pred HHHHHHHHhhh--CCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH-HHHHHHHHhhhc
Q 032995 4 TAVLREWFDRV--DSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK-FLLKVQHAFSDL 80 (129)
Q Consensus 4 ~~~~~~~F~~~--d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~-~~~~~~~~f~~~ 80 (129)
++++..+...+ |.++...+.-++|...+..+........+.-+.+.|...=+|.+-|+|...-++ .-..+.++|...
T Consensus 44 ~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~d~l~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lM 123 (355)
T PRK13654 44 REELDAILEEMRADYNRHHFVRDEEFDQDWDHLDPETRKEFIDFLERSCTAEFSGFLLYKELSRRLKDRNPLLAELFQLM 123 (355)
T ss_pred HHHHHHHHHHHHhCcccccccCChhhhhchhhCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhccccCcHHHHHHHHH
Confidence 33444444443 445555666666666555432222222334444445444456666666554443 125678888877
Q ss_pred c----CCCCcccHHHHHHHHHHcCCC
Q 032995 81 E----RGRGYLVPDNVYEALVKIGFS 102 (129)
Q Consensus 81 d----~~~g~i~~~e~~~~l~~~~~~ 102 (129)
. .+.|+|+ .+|+..|..
T Consensus 124 aRDEARHAGFlN-----kam~df~l~ 144 (355)
T PRK13654 124 ARDEARHAGFLN-----KAMKDFGLS 144 (355)
T ss_pred hhhHHHHhhhHH-----HHHHHcCcc
Confidence 4 2678888 456665543
No 176
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=56.29 E-value=49 Score=20.88 Aligned_cols=45 Identities=24% Similarity=0.341 Sum_probs=30.8
Q ss_pred CcccHHHHHHHHHH---------HHHHHHHhhhcc-CCCCcccHHHHHHHHHHcC
Q 032995 56 GTMSFEEFVELNKF---------LLKVQHAFSDLE-RGRGYLVPDNVYEALVKIG 100 (129)
Q Consensus 56 ~~i~~~ef~~~~~~---------~~~~~~~f~~~d-~~~g~i~~~e~~~~l~~~~ 100 (129)
..++-..|..+++. ...+--+|..+- .+...|+.++|..+|..+.
T Consensus 17 ~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 17 TEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp SEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 34666666666543 256667777765 5677799999999998863
No 177
>PLN02223 phosphoinositide phospholipase C
Probab=56.13 E-value=76 Score=24.61 Aligned_cols=64 Identities=6% Similarity=0.023 Sum_probs=45.1
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHH---HhCC--CCCCHHHHHHHHHHhcCC--------CCCcccHHHHHHHHH
Q 032995 4 TAVLREWFDRVDSEKTGSIAAAQLKHAF---AVGN--LDFSLSVVQQMIRMYDFD--------RNGTMSFEEFVELNK 68 (129)
Q Consensus 4 ~~~~~~~F~~~d~~~~g~i~~~e~~~~l---~~~~--~~~~~~~~~~~~~~~d~~--------~~~~i~~~ef~~~~~ 68 (129)
.+.++.+|..+. ++.|.++...+.++| .... ...+...++.++..+-.. ..+.++.+.|...+.
T Consensus 15 p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~ 91 (537)
T PLN02223 15 PDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLF 91 (537)
T ss_pred cHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhc
Confidence 467899999984 667999999999988 4432 246677777777765222 124588888887663
No 178
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=55.71 E-value=26 Score=22.58 Aligned_cols=14 Identities=14% Similarity=0.014 Sum_probs=5.7
Q ss_pred CCHHHHHHHHHhhc
Q 032995 103 LDSPAFYTVCEVCT 116 (129)
Q Consensus 103 ~~~~~~~~l~~~~d 116 (129)
+++++.+++++.|+
T Consensus 17 lp~~e~~e~l~~Y~ 30 (181)
T PF08006_consen 17 LPEEEREEILEYYE 30 (181)
T ss_pred CCHHHHHHHHHHHH
Confidence 33444444444443
No 179
>PF01498 HTH_Tnp_Tc3_2: Transposase; InterPro: IPR002492 Transposase proteins are necessary for efficient DNA transposition. This family includes the amino-terminal region of Tc1, Tc1A, Tc1B and Tc2B transposases of Caenorhabditis elegans. The region encompasses the specific DNA binding and second DNA recognition domains as well as an amino-terminal region of the catalytic domain of Tc3 as described in []. Tc3 is a member of the Tc1/mariner family of transposable elements. This entry also includes histone-lysine N-methyltransferase SETMAR, which is a SET domain and mariner transposase fusion gene-containing protein. This histone methyltransferase has sequence-specific DNA-binding activity and recognises the 19-mer core of the 5'-terminal inverted repeats (TIRs) of the Hsmar1 element. This protein has DNA nicking activity, and has in vivo end joining activity and may mediate genomic integration of foreign DNA [, , , ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated, 0015074 DNA integration; PDB: 3K9K_B 3F2K_B 3K9J_B 1U78_A.
Probab=55.21 E-value=6.3 Score=21.09 Aligned_cols=36 Identities=8% Similarity=0.063 Sum_probs=17.0
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhchh
Q 032995 83 GRGYLVPDNVYEALVKIGFSLDSPAFYTVCEVCTSI 118 (129)
Q Consensus 83 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~ 118 (129)
.+..+|..++...+...|.++|..-+...++.....
T Consensus 10 ~~p~~s~~~i~~~l~~~~~~vS~~TI~r~L~~~g~~ 45 (72)
T PF01498_consen 10 RNPRISAREIAQELQEAGISVSKSTIRRRLREAGLK 45 (72)
T ss_dssp ------HHHHHHHT---T--S-HHHHHHHHHHT-EE
T ss_pred HCCCCCHHHHHHHHHHccCCcCHHHHHHHHHHcCcc
Confidence 455677777777776668888888888777766543
No 180
>PLN02222 phosphoinositide phospholipase C 2
Probab=54.16 E-value=82 Score=24.71 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH--------HHHHHHhhhcc--CCCCcccHHHHHHHHHH
Q 032995 38 FSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL--------LKVQHAFSDLE--RGRGYLVPDNVYEALVK 98 (129)
Q Consensus 38 ~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~--------~~~~~~f~~~d--~~~g~i~~~e~~~~l~~ 98 (129)
.+..++..+|..+.. ++.++.++|..++... +....++..+. ...+.++.+.|..+|..
T Consensus 22 ~~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 22 EAPREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CCcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 456689999999864 4689999998887653 34556666654 25677999999888854
No 181
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=53.57 E-value=20 Score=17.63 Aligned_cols=21 Identities=14% Similarity=0.370 Sum_probs=16.8
Q ss_pred cHHHHHHHHHHcCCCCCHHHH
Q 032995 88 VPDNVYEALVKIGFSLDSPAF 108 (129)
Q Consensus 88 ~~~e~~~~l~~~~~~~~~~~~ 108 (129)
+.+++..+.+..|+.+|.+++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 567888888888998887765
No 182
>PLN02228 Phosphoinositide phospholipase C
Probab=53.51 E-value=1.1e+02 Score=24.04 Aligned_cols=60 Identities=20% Similarity=0.353 Sum_probs=44.2
Q ss_pred CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH--------HHHHHHhhhcc-C----CCCcccHHHHHHHHHH
Q 032995 37 DFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL--------LKVQHAFSDLE-R----GRGYLVPDNVYEALVK 98 (129)
Q Consensus 37 ~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~--------~~~~~~f~~~d-~----~~g~i~~~e~~~~l~~ 98 (129)
..+..++..+|..+..+ +.++.++|..++... +....++..+. . ..|.++.+.|..+|-.
T Consensus 20 ~~~~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 20 REPPVSIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CCCcHHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 45788899999998643 579999998887643 44566676664 1 3477999999888854
No 183
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=53.41 E-value=47 Score=19.84 Aligned_cols=53 Identities=11% Similarity=0.122 Sum_probs=40.4
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHH
Q 032995 8 REWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVE 65 (129)
Q Consensus 8 ~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~ 65 (129)
...|......++...+..+++.+|...|.....+.++.++.... |+ +.+|.+.
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~----GK-~i~ElIA 56 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK----GK-DIEELIA 56 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc----CC-CHHHHHH
Confidence 34455666677778899999999999999999999999998873 32 5555443
No 184
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=52.69 E-value=68 Score=21.48 Aligned_cols=56 Identities=7% Similarity=0.149 Sum_probs=35.1
Q ss_pred cHHHHHHHHHHHHHHHHHhhhcc-CCCCcccHHHHHHHHHHcC---CCCCHHHHHHHHHhhc
Q 032995 59 SFEEFVELNKFLLKVQHAFSDLE-RGRGYLVPDNVYEALVKIG---FSLDSPAFYTVCEVCT 116 (129)
Q Consensus 59 ~~~ef~~~~~~~~~~~~~f~~~d-~~~g~i~~~e~~~~l~~~~---~~~~~~~~~~l~~~~d 116 (129)
+..+|..-+. .++.++..... .+.|.|+..|+...++... ..+|++++...++.+.
T Consensus 87 ~~~~f~~ELa--~qi~e~c~~~~~~~GGii~L~dl~~~~nr~R~g~~lISp~Di~~A~~~l~ 146 (223)
T PF04157_consen 87 GSGDFYYELA--VQIAEVCLATRSKNGGIISLSDLYCRYNRARGGSELISPEDILRACKLLE 146 (223)
T ss_dssp CHHHHHHHHH--HHHHHHHHHHCCTTTSEEEHHHHHHHHHHCTTTSST--HHHHHHHHHHHC
T ss_pred cchhHHHHHH--HHHHHHHHHHHhcCCCEEEHHHHHHHHHHhcccCCCcCHHHHHHHHHHHH
Confidence 5556555443 33444444443 4667899999888888853 3468888888888775
No 185
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=51.22 E-value=36 Score=17.87 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHH
Q 032995 61 EEFVELNKFLLKVQHAFSDLERGRGYLVPDNVYEALVKIGFSLDSPAFYTV 111 (129)
Q Consensus 61 ~ef~~~~~~~~~~~~~f~~~d~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l 111 (129)
..|+..+..-..++.-.+.. .+.+++..+.+..|+.++.+++...
T Consensus 5 ~~Fl~~~~~d~~L~~~l~~~------~~~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 5 KAFLEKVKTDPDLREKLKAA------EDPEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred HHHHHHHHcCHHHHHHHHHc------CCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 44555554444444444443 3477888888999999999888764
No 186
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=50.73 E-value=27 Score=25.12 Aligned_cols=94 Identities=14% Similarity=0.168 Sum_probs=49.4
Q ss_pred HHHHHHHHhhh--CCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-HHHHHHHhhhc
Q 032995 4 TAVLREWFDRV--DSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF-LLKVQHAFSDL 80 (129)
Q Consensus 4 ~~~~~~~F~~~--d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~-~~~~~~~f~~~ 80 (129)
++++..+...+ |.++...+.-++|......+........+.-+.+.|...=+|.+-|+|...-++. -..+.++|...
T Consensus 40 ~~e~~A~l~E~r~DyNr~HF~R~~eF~~~~d~l~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk~~nP~lae~F~lM 119 (351)
T CHL00185 40 IEEIEAILEEFRADYNQQHFIRDNEFNQSWSNLDEKTKSLFVEFLERSCTAEFSGFLLYKELSRKLKDKNPLLAEGFLLM 119 (351)
T ss_pred HHHHHHHHHHHHhCccccccccChhhhhchhhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhccCCcHHHHHHHHH
Confidence 34444444433 4455556666666665554322222223344444444444566666665444321 25678888877
Q ss_pred c----CCCCcccHHHHHHHHHHcCCC
Q 032995 81 E----RGRGYLVPDNVYEALVKIGFS 102 (129)
Q Consensus 81 d----~~~g~i~~~e~~~~l~~~~~~ 102 (129)
. .+.|+|+ .+|+..|..
T Consensus 120 aRDEARHAGFlN-----kam~df~l~ 140 (351)
T CHL00185 120 SRDEARHAGFLN-----KAMSDFNLS 140 (351)
T ss_pred hhhhHHHhhhHH-----HHHHHcCcc
Confidence 4 2678887 456665543
No 187
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=49.71 E-value=13 Score=22.55 Aligned_cols=84 Identities=12% Similarity=0.168 Sum_probs=43.4
Q ss_pred CCCcccHHHHHHHHHhC--CCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-------HHHHHHHhhhccCCCCccc
Q 032995 18 KTGSIAAAQLKHAFAVG--NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF-------LLKVQHAFSDLERGRGYLV 88 (129)
Q Consensus 18 ~~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~-------~~~~~~~f~~~d~~~g~i~ 88 (129)
-||.++..|...+...+ ....+......+...++.......++.+++..+.. ..-+..++.... -+|.++
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~-ADG~~~ 114 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAY-ADGEIS 114 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCT-CTTC-S
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHh-cCCCCC
Confidence 35888888877665544 23444555566665554443445777777665532 233444444444 456666
Q ss_pred HHH---HHHHHHHcCCC
Q 032995 89 PDN---VYEALVKIGFS 102 (129)
Q Consensus 89 ~~e---~~~~l~~~~~~ 102 (129)
..| +.++...+|.+
T Consensus 115 ~~E~~~l~~ia~~L~i~ 131 (140)
T PF05099_consen 115 PEEQEFLRRIAEALGIS 131 (140)
T ss_dssp CCHHHHHHHHHHHCTS-
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 655 34444445544
No 188
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=49.58 E-value=38 Score=17.72 Aligned_cols=32 Identities=6% Similarity=0.047 Sum_probs=24.8
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 032995 84 RGYLVPDNVYEALVKIGFSLDSPAFYTVCEVC 115 (129)
Q Consensus 84 ~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 115 (129)
+-.+|.+|+.+++..++..++..++-.+-.++
T Consensus 7 s~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 7 SKKLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred hHHccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 34588888999999988888888777666654
No 189
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=49.56 E-value=91 Score=23.56 Aligned_cols=18 Identities=6% Similarity=0.006 Sum_probs=14.4
Q ss_pred CCCCCHHHHHHHHHhhch
Q 032995 100 GFSLDSPAFYTVCEVCTS 117 (129)
Q Consensus 100 ~~~~~~~~~~~l~~~~d~ 117 (129)
|...+.++++++++.|..
T Consensus 403 GSG~sv~dVn~Llkq~~~ 420 (451)
T COG0541 403 GSGTSVQDVNKLLKQFKQ 420 (451)
T ss_pred cCCCCHHHHHHHHHHHHH
Confidence 556888889999998864
No 190
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=48.83 E-value=50 Score=18.82 Aligned_cols=74 Identities=11% Similarity=-0.008 Sum_probs=46.3
Q ss_pred CCcccHHHHHHHHHhCC--CCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH-------HHHHHHhhhccCCCCcccH
Q 032995 19 TGSIAAAQLKHAFAVGN--LDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL-------LKVQHAFSDLERGRGYLVP 89 (129)
Q Consensus 19 ~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~-------~~~~~~f~~~d~~~g~i~~ 89 (129)
||.++..|...+-..+. ++.+..+...+...+........++.+|...+... .-+..+|+..- -+|.++.
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA~-ADG~~~~ 91 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVAY-ADGELDE 91 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-hcCCCCH
Confidence 68888888766665421 35677788888877766656667888887766431 22233333222 5677887
Q ss_pred HHHH
Q 032995 90 DNVY 93 (129)
Q Consensus 90 ~e~~ 93 (129)
.|-.
T Consensus 92 ~E~~ 95 (104)
T cd07313 92 YEEH 95 (104)
T ss_pred HHHH
Confidence 7653
No 191
>PHA02335 hypothetical protein
Probab=48.25 E-value=58 Score=19.37 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=22.5
Q ss_pred CcccHHHHHHHHHHHHHHHHHhhhccC
Q 032995 56 GTMSFEEFVELNKFLLKVQHAFSDLER 82 (129)
Q Consensus 56 ~~i~~~ef~~~~~~~~~~~~~f~~~d~ 82 (129)
..|+++||..=+++..-+++.|+.|..
T Consensus 23 ~sVt~ddf~~DlkRi~yIkrllKRy~~ 49 (118)
T PHA02335 23 QSVTYDDFEEDLKRFKYIKRLFKRYLN 49 (118)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcC
Confidence 458899998888888888888888883
No 192
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=47.64 E-value=42 Score=23.93 Aligned_cols=94 Identities=15% Similarity=0.175 Sum_probs=49.0
Q ss_pred HHHHHHHhhh--CCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-HHHHHHHhhhcc
Q 032995 5 AVLREWFDRV--DSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF-LLKVQHAFSDLE 81 (129)
Q Consensus 5 ~~~~~~F~~~--d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~-~~~~~~~f~~~d 81 (129)
+++..+...+ |.++...+.-++|......+........+.-+.+.+...=+|.+-|+|...-++. -..+.++|....
T Consensus 25 ~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~~~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lMa 104 (323)
T cd01047 25 EEFEAMLAEFKADYNRHHFVRNDEFDQAADKIDPELRQIFLEFLERSCTSEFSGFLLYKELGRRLKNTNPVVAELFRLMA 104 (323)
T ss_pred HHHHHHHHHHHhCcccccccCCchhhhhhhhCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHcccCCcHHHHHHHHHh
Confidence 3444444433 4444455666666655544322223333444444454444566666665443322 256788888774
Q ss_pred ----CCCCcccHHHHHHHHHHcCCCC
Q 032995 82 ----RGRGYLVPDNVYEALVKIGFSL 103 (129)
Q Consensus 82 ----~~~g~i~~~e~~~~l~~~~~~~ 103 (129)
.+.|+|+ .+|+..|..+
T Consensus 105 RDEARHAGFlN-----kam~df~l~l 125 (323)
T cd01047 105 RDEARHAGFLN-----KALSDFNLAL 125 (323)
T ss_pred hhHHHHhhhHH-----HHHHHcCccc
Confidence 2678887 4566655433
No 193
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=47.15 E-value=46 Score=17.94 Aligned_cols=40 Identities=15% Similarity=0.119 Sum_probs=26.9
Q ss_pred cHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHH
Q 032995 23 AAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEE 62 (129)
Q Consensus 23 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~e 62 (129)
+-.++..++...|..++..++..+++.-+..+-...+-+.
T Consensus 15 ~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~ 54 (68)
T PF07308_consen 15 KDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQL 54 (68)
T ss_pred ChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHH
Confidence 3467888888888888888888888775444333343333
No 194
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=46.06 E-value=37 Score=26.54 Aligned_cols=49 Identities=14% Similarity=0.187 Sum_probs=41.0
Q ss_pred HHHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhchhh
Q 032995 71 LKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCEVCTSIF 119 (129)
Q Consensus 71 ~~~~~~f~~~d-~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~ 119 (129)
...+.-|..+| +..|+++..+...+|+..+..++.+...++++.+|...
T Consensus 593 ~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~ 642 (680)
T KOG0042|consen 593 LRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENL 642 (680)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Confidence 34557788888 58999999999999999988899999999999888653
No 195
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=45.73 E-value=59 Score=18.76 Aligned_cols=87 Identities=11% Similarity=0.052 Sum_probs=56.2
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHhhhcc-C
Q 032995 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLE-R 82 (129)
Q Consensus 4 ~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~f~~~d-~ 82 (129)
.+.+..+|..+- ..|...++..+.+.+| ++..++..+-.... + +. +...+....+- .
T Consensus 3 ~~~l~~~f~~i~----~~V~~~~Wk~laR~LG--Lse~~I~~i~~~~~----~--~~----------eq~~qmL~~W~~~ 60 (96)
T cd08315 3 QETLRRSFDHFI----KEVPFDSWNRLMRQLG--LSENEIDVAKANER----V--TR----------EQLYQMLLTWVNK 60 (96)
T ss_pred HhHHHHHHHHHH----HHCCHHHHHHHHHHcC--CCHHHHHHHHHHCC----C--CH----------HHHHHHHHHHHHh
Confidence 456777777763 4577888999999875 67777777664431 1 11 23334444444 2
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHH
Q 032995 83 GRGYLVPDNVYEALVKIGFSLDSPAFYTVC 112 (129)
Q Consensus 83 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~ 112 (129)
....=+...+..+|..++.....+.++..+
T Consensus 61 ~G~~At~~~L~~aL~~~~~~~~Ae~I~~~l 90 (96)
T cd08315 61 TGRKASVNTLLDALEAIGLRLAKESIQDEL 90 (96)
T ss_pred hCCCcHHHHHHHHHHHcccccHHHHHHHHH
Confidence 222345678999999999888887777654
No 196
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=45.60 E-value=78 Score=20.12 Aligned_cols=72 Identities=14% Similarity=0.141 Sum_probs=44.2
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhhhccCCCCcccHHHHHHHHHHc-----CCCCCHHHHHHHHHhhchhhHHHHhh
Q 032995 53 DRNGTMSFEEFVELNKFLLKVQHAFSDLERGRGYLVPDNVYEALVKI-----GFSLDSPAFYTVCEVCTSIFYFKLKE 125 (129)
Q Consensus 53 ~~~~~i~~~ef~~~~~~~~~~~~~f~~~d~~~g~i~~~e~~~~l~~~-----~~~~~~~~~~~l~~~~d~~~~~~~~~ 125 (129)
+.++.|++..|..+++.. .-.++=..|=++...++.+++...+... ......++-+.+.+.+..-+++-+.+
T Consensus 95 ~~n~~i~~~~ff~~lQ~~-lGdWIT~~~Lkh~n~MSk~Qik~L~~~Ii~~akae~~dtE~Ye~vwkKmPaY~~nil~~ 171 (175)
T PF04876_consen 95 STNGLIDIGKFFDILQPK-LGDWITKNFLKHPNRMSKDQIKTLCEQIIEMAKAESSDTEHYEKVWKKMPAYFSNILQP 171 (175)
T ss_pred CcccceeHHHHHHHHHHH-hhhHHHHHHHhccchhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHhhHHHHHHHHH
Confidence 346778888888887632 1112222233455667888877777663 35566777777777776666655443
No 197
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=45.23 E-value=66 Score=19.16 Aligned_cols=37 Identities=16% Similarity=0.182 Sum_probs=32.1
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhchh
Q 032995 82 RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCEVCTSI 118 (129)
Q Consensus 82 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~ 118 (129)
.++..+|.+++..+|+..|..+.+..+..+++.+..+
T Consensus 13 ~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~GK 49 (109)
T cd05833 13 GGNASPSAADVKKILGSVGVEVDDEKLNKVISELEGK 49 (109)
T ss_pred cCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcCC
Confidence 3566899999999999999999999999999888654
No 198
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=44.38 E-value=42 Score=24.21 Aligned_cols=83 Identities=18% Similarity=0.173 Sum_probs=44.4
Q ss_pred CCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-HHHHHHHhhhcc----CCCCcccH
Q 032995 15 DSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF-LLKVQHAFSDLE----RGRGYLVP 89 (129)
Q Consensus 15 d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~-~~~~~~~f~~~d----~~~g~i~~ 89 (129)
|.++...+.-++|......+........+.-+.+.+...=+|.+-|+|...-++. -..+.++|.... .+.|+|+
T Consensus 53 DyNr~HF~R~~eF~~~~~~l~~~~r~~FidFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlN- 131 (357)
T PLN02508 53 DYNQTHFVRNEEFKAAADKIQGPLRQIFIEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFTLMSRDEARHAGFLN- 131 (357)
T ss_pred CccccccccChhhccchhhCCHHHHHHHHHHHHhhhhhhcccchHHHHHHHhcccCChHHHHHHHHhCchhHHHHhHHH-
Confidence 4444445555566554443321222223344444455555677777765544322 256788888774 2568887
Q ss_pred HHHHHHHHHcCCC
Q 032995 90 DNVYEALVKIGFS 102 (129)
Q Consensus 90 ~e~~~~l~~~~~~ 102 (129)
.+|+..|..
T Consensus 132 ----kam~Df~l~ 140 (357)
T PLN02508 132 ----KALSDFNLA 140 (357)
T ss_pred ----HHHHHcCcc
Confidence 456665533
No 199
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.13 E-value=1.5e+02 Score=22.81 Aligned_cols=43 Identities=5% Similarity=0.132 Sum_probs=28.3
Q ss_pred HHHHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH
Q 032995 71 LKVQHAFSDLERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCE 113 (129)
Q Consensus 71 ~~~~~~f~~~d~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~ 113 (129)
+..+++++......|.+..+-|..+.....+....+.+.+|+.
T Consensus 224 ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMis 266 (625)
T KOG4422|consen 224 ERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMIS 266 (625)
T ss_pred HHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHH
Confidence 4555555555546788888888777766656666666666665
No 200
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=43.68 E-value=49 Score=25.30 Aligned_cols=75 Identities=8% Similarity=-0.030 Sum_probs=47.3
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH----HHHHHHHhhhcc
Q 032995 6 VLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF----LLKVQHAFSDLE 81 (129)
Q Consensus 6 ~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~----~~~~~~~f~~~d 81 (129)
....+|..+-+.+...++-.++..++...|......+-...|...+.... .+.|.+++..... -..+++.|..++
T Consensus 486 ~~t~~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~egi~~F~~~a~s~~-gv~yl~v~~~i~sel~D~d~v~~~~~~f~ 564 (612)
T COG5069 486 SNTALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEGIRSFGDPAGSVS-GVFYLDVLKGIHSELVDYDLVTRGFTEFD 564 (612)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHhccccCCccceeeccCCccccc-cchHHHHHHHHhhhhcChhhhhhhHHHHH
Confidence 44456776655555678999999999998877665555555543332222 3677777765543 245666666665
No 201
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.63 E-value=20 Score=29.29 Aligned_cols=63 Identities=16% Similarity=0.294 Sum_probs=52.8
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 032995 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF 69 (129)
Q Consensus 5 ~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 69 (129)
.....+|...|+.++|.|+-.+-...+... ++....+-++|...|..+.|.++...|...++.
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s--~L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrl 73 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFLSKS--GLPDQVLGQIWSLADSSGKGFLNRQGFYAALRL 73 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhhhcc--ccchhhhhccccccccccCCccccccccccchH
Confidence 356778999999999999999998888866 566777888999999888899999999886654
No 202
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=43.06 E-value=1.9e+02 Score=23.77 Aligned_cols=46 Identities=11% Similarity=0.068 Sum_probs=33.3
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCC
Q 032995 10 WFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRN 55 (129)
Q Consensus 10 ~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~ 55 (129)
++..||+..+|.|..-.|+..+-.+......+...-+|+....++.
T Consensus 475 llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~s 520 (966)
T KOG4286|consen 475 LLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTS 520 (966)
T ss_pred HHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchh
Confidence 4567888888988888888777766655666666778877755443
No 203
>COG1775 HgdB Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB [Amino acid transport and metabolism]
Probab=42.54 E-value=1.4e+02 Score=22.09 Aligned_cols=71 Identities=14% Similarity=0.141 Sum_probs=50.1
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhhhcc---C-CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhchhhHHHHhh
Q 032995 55 NGTMSFEEFVELNKFLLKVQHAFSDLE---R-GRGYLVPDNVYEALVKIGFSLDSPAFYTVCEVCTSIFYFKLKE 125 (129)
Q Consensus 55 ~~~i~~~ef~~~~~~~~~~~~~f~~~d---~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~~~~ 125 (129)
.+.|+.+.+...+.+.+..++++..+. . ..-.|+..+....+...-+....++....++.....+....+|
T Consensus 157 g~~iT~e~L~da~~r~N~~rea~~k~~kL~~~~P~plsg~D~~~~~~~~~~~~d~d~~~~~l~~l~eelekr~~e 231 (379)
T COG1775 157 GNEITEEKLRDAIARYNRLREALAKLYKLAKHKPSPLSGSDAFNVMAFAVFLRDKDAFIEELEELIEELEKRVEE 231 (379)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhHHHHHhhHHHHhcchHHHHHHHHHHHHHHHHHHhc
Confidence 445999998888888888888888886 2 4566888887777766545556666666666666655554443
No 204
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=42.03 E-value=72 Score=18.76 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=20.9
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHhhc
Q 032995 91 NVYEALVKIGFSLDSPAFYTVCEVCT 116 (129)
Q Consensus 91 e~~~~l~~~~~~~~~~~~~~l~~~~d 116 (129)
-+.+.|+..|+++|+++++.+++..-
T Consensus 76 ~v~~~L~~~gi~~t~~~i~~~IEaAV 101 (108)
T PF09682_consen 76 YVKERLKKKGIKVTDEQIEGAIEAAV 101 (108)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 35677788899999999999887653
No 205
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=41.45 E-value=93 Score=23.53 Aligned_cols=61 Identities=15% Similarity=0.170 Sum_probs=42.2
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhC-CCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 032995 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVG-NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK 68 (129)
Q Consensus 4 ~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 68 (129)
.++++.+-+..|.|.+|.|+.+|--.+++.- .+.-+...-+..| .. .|..|+.++....|.
T Consensus 67 ~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~f---H~-dD~~ItVedLWeaW~ 128 (575)
T KOG4403|consen 67 YEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKF---HG-DDKHITVEDLWEAWK 128 (575)
T ss_pred HHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhc---cC-CccceeHHHHHHHHH
Confidence 3577888889999999999999999998863 2333333333333 22 466799888877653
No 206
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=41.43 E-value=53 Score=18.64 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=21.9
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHH
Q 032995 83 GRGYLVPDNVYEALVKIGFSLDSPAFYTVC 112 (129)
Q Consensus 83 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~ 112 (129)
+=|+.+..+|...|+.+| +|.+++.+.+
T Consensus 59 ~iGy~N~KqllkrLN~f~--it~~e~~~al 86 (87)
T PF13331_consen 59 GIGYGNAKQLLKRLNMFG--ITREEFEEAL 86 (87)
T ss_pred CCCCCCHHHHHHHHHHcC--CCHHHHHHHh
Confidence 458888889988888876 7777777665
No 207
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=40.75 E-value=54 Score=18.30 Aligned_cols=33 Identities=24% Similarity=0.188 Sum_probs=19.1
Q ss_pred CCCcccHH-------HHHHHHHHcCCCCCHHHHHHHHHhh
Q 032995 83 GRGYLVPD-------NVYEALVKIGFSLDSPAFYTVCEVC 115 (129)
Q Consensus 83 ~~g~i~~~-------e~~~~l~~~~~~~~~~~~~~l~~~~ 115 (129)
.-|.|+.+ |+..+|+.+|.+++++|..=+-.+.
T Consensus 6 klGKls~d~y~~qkvEIL~ALrkLge~Ls~eE~~FL~~~~ 45 (78)
T PF06384_consen 6 KLGKLSKDVYTQQKVEILTALRKLGEKLSPEEEAFLEAHS 45 (78)
T ss_dssp -S-SSHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHTH
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 34666665 5678889999999998877555543
No 208
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=40.47 E-value=53 Score=16.71 Aligned_cols=30 Identities=17% Similarity=0.045 Sum_probs=17.6
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHH
Q 032995 83 GRGYLVPDNVYEALVKIGFSLDSPAFYTVC 112 (129)
Q Consensus 83 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~ 112 (129)
.+|.|+.+||..-+..+..--+..++..++
T Consensus 20 a~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~ 49 (53)
T PF08044_consen 20 AEGRLSLDEFDERLDAAYAARTRGELDALF 49 (53)
T ss_pred HCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 467777777766666654444444454443
No 209
>PLN02223 phosphoinositide phospholipase C
Probab=40.28 E-value=1.1e+02 Score=23.87 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=9.9
Q ss_pred HHHHhhhccCCCCcccHHHHHHHH
Q 032995 73 VQHAFSDLERGRGYLVPDNVYEAL 96 (129)
Q Consensus 73 ~~~~f~~~d~~~g~i~~~e~~~~l 96 (129)
++.+|..+..+.|.++.+.+.+++
T Consensus 18 v~~~f~~~~~~~~~m~~~~l~~fl 41 (537)
T PLN02223 18 ILNFFGNEFHGYDDDMPELLPRFI 41 (537)
T ss_pred HHHHHHHhhcCCCCCCHHHHHHHH
Confidence 334444443334444444444444
No 210
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=40.27 E-value=62 Score=21.78 Aligned_cols=61 Identities=18% Similarity=0.132 Sum_probs=43.8
Q ss_pred CcccHHHHHHHHHHHHHHHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhchh
Q 032995 56 GTMSFEEFVELNKFLLKVQHAFSDLERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCEVCTSI 118 (129)
Q Consensus 56 ~~i~~~ef~~~~~~~~~~~~~f~~~d~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~ 118 (129)
+.+...-|++.+ +++-...+..-=+.+|....+++...++..|..++.+.+..+++.-|++
T Consensus 31 ~~~~~SK~lS~v--LRH~p~~~gl~lD~~Gwa~i~~l~~~~~k~~~~~~~~~l~~iV~~d~K~ 91 (211)
T COG1859 31 ERVKLSKFLSGV--LRHFPEAIGLRLDEEGWADIDELLEGLRKAGRWLTRELLLAVVATDDKG 91 (211)
T ss_pred hhhhHHHHHHHH--HhcChHHcCeeeccccchhHHHHHHHHHhhccCCCHHHHHHHHhcCCCc
Confidence 334444444433 2344444444336899999999999999999999999999999988764
No 211
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=39.22 E-value=87 Score=18.81 Aligned_cols=36 Identities=11% Similarity=0.134 Sum_probs=31.5
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhchh
Q 032995 83 GRGYLVPDNVYEALVKIGFSLDSPAFYTVCEVCTSI 118 (129)
Q Consensus 83 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~ 118 (129)
++-.+|.+++..+|...|..+....+..+++.+..+
T Consensus 14 g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~gK 49 (113)
T PLN00138 14 GNTCPSAEDLKDILGSVGADADDDRIELLLSEVKGK 49 (113)
T ss_pred CCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcCC
Confidence 556799999999999999999999999999888654
No 212
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=38.92 E-value=76 Score=18.08 Aligned_cols=72 Identities=15% Similarity=0.130 Sum_probs=35.3
Q ss_pred CCcccHHHHHHHHHhCC----C-CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH---HHHHHHHhhhc-c--CCCCcc
Q 032995 19 TGSIAAAQLKHAFAVGN----L-DFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF---LLKVQHAFSDL-E--RGRGYL 87 (129)
Q Consensus 19 ~g~i~~~e~~~~l~~~~----~-~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~---~~~~~~~f~~~-d--~~~g~i 87 (129)
||.++..|...+.+.+. . ......+..++...-..- ...+..++...+.. .+....++... . .-+|.+
T Consensus 16 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ia~aDG~~ 94 (111)
T cd07176 16 DGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLALL-RPEGLAALLKAAAKLLPPELRETAFAVAVDIAAADGEV 94 (111)
T ss_pred ccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHccCCC
Confidence 58888888777766542 1 234455555555442220 02334455444432 12222333222 2 256778
Q ss_pred cHHH
Q 032995 88 VPDN 91 (129)
Q Consensus 88 ~~~e 91 (129)
+..|
T Consensus 95 ~~~E 98 (111)
T cd07176 95 DPEE 98 (111)
T ss_pred CHHH
Confidence 7766
No 213
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=38.74 E-value=82 Score=23.89 Aligned_cols=35 Identities=17% Similarity=0.114 Sum_probs=30.9
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHhhchhh
Q 032995 85 GYLVPDNVYEALVKIGFSLDSPAFYTVCEVCTSIF 119 (129)
Q Consensus 85 g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~ 119 (129)
-.++.++++.+-+.....++++|.+.+.+.+...+
T Consensus 387 ~~ItkEeVkKLAkLARLeLSEEElEkl~~dLn~IL 421 (477)
T PRK12821 387 QQLNKDELKKLARLVMFDLDDAELEKLQVEFKDIT 421 (477)
T ss_pred ccCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 45999999999999999999999999999887653
No 214
>PF09415 CENP-X: CENP-S associating Centromere protein X; InterPro: IPR018552 Centromere protein X (CENP-X) is a component of the CENP-S complex. The CENP-S complex is composed of at least of CENP-S and CENP-X and is essential for the stable assembly of the outer kinetchore []. CENP-X is also a DNA-binding component of the Fanconi anemia (FA) core complex involved in DNA damage repair and genome maintenance. The FA complex is composed of CENPS, FANCA, FANCB, FANCC, FANCE, FANCF, FANCG, FANCL/PHF9, FANCM, FAAP24 and CENPX. Interacts with CENPS, FANCM and FAAP24 [, ].; PDB: 4DRB_L 4DRA_H 3V9R_D.
Probab=38.00 E-value=71 Score=17.44 Aligned_cols=57 Identities=12% Similarity=0.127 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCCCccc------HHHHHHHHHHHHHHHHHhhhccCCCC-cccHHHHHHHHHH
Q 032995 42 VVQQMIRMYDFDRNGTMS------FEEFVELNKFLLKVQHAFSDLERGRG-YLVPDNVYEALVK 98 (129)
Q Consensus 42 ~~~~~~~~~d~~~~~~i~------~~ef~~~~~~~~~~~~~f~~~d~~~g-~i~~~e~~~~l~~ 98 (129)
.+.+++...-.+.+-+|+ ..+|+.+....-..|.+...-+.+.+ +|..+++.+++..
T Consensus 4 li~rll~~~f~~~~tkIs~dal~l~~eyl~iFV~EAv~Ra~~~a~~e~~~~~le~e~LEki~pq 67 (72)
T PF09415_consen 4 LIARLLHEHFKDDKTKISKDALKLSAEYLRIFVREAVARAAEQAEAEGDEGFLEVEHLEKILPQ 67 (72)
T ss_dssp HHHHHHCTTSSSTT-EE-CCCHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSEE-HHHHHHHCHC
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 344555543333333443 44555555544444444434444444 4999998887654
No 215
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=37.88 E-value=96 Score=18.93 Aligned_cols=27 Identities=11% Similarity=0.095 Sum_probs=17.8
Q ss_pred HHHHHhhhcc-CCCCcccHHHHHHHHHH
Q 032995 72 KVQHAFSDLE-RGRGYLVPDNVYEALVK 98 (129)
Q Consensus 72 ~~~~~f~~~d-~~~g~i~~~e~~~~l~~ 98 (129)
.+..++..|| .++|.|+.-.++-++..
T Consensus 98 ~ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 98 LLNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 3566778888 68899998888777654
No 216
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=37.61 E-value=44 Score=23.97 Aligned_cols=94 Identities=15% Similarity=0.212 Sum_probs=44.9
Q ss_pred HHHHHHHhhh--CCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-HHHHHHHhhhcc
Q 032995 5 AVLREWFDRV--DSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF-LLKVQHAFSDLE 81 (129)
Q Consensus 5 ~~~~~~F~~~--d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~-~~~~~~~f~~~d 81 (129)
+++..+...+ |.++...+.-++|......+........+.-+.+.+...=+|.+-|+|...-++. -..+.++|....
T Consensus 35 ~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~l~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk~~~P~lae~F~~Ma 114 (337)
T TIGR02029 35 NEWDAMLAEMKADYNRHHFVRNEEFDQSWEHIDGELRQAFIEFLERSCTSEFSGFLLYKELSRRLKNRDPVVAELFQLMA 114 (337)
T ss_pred HHHHHHHHHHHhCccccccccChhhhcchhhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCCChHHHHHHHHHh
Confidence 3444444433 4444445555555554443211112222333344444444555555554433321 134788888774
Q ss_pred ----CCCCcccHHHHHHHHHHcCCCC
Q 032995 82 ----RGRGYLVPDNVYEALVKIGFSL 103 (129)
Q Consensus 82 ----~~~g~i~~~e~~~~l~~~~~~~ 103 (129)
...|+|+ .+|+..|..+
T Consensus 115 RDEARHAGFlN-----kam~df~l~l 135 (337)
T TIGR02029 115 RDEARHAGFLN-----KALGDFGLAL 135 (337)
T ss_pred hhhHHHhhhHH-----HHHHHcCccc
Confidence 2678887 4566655433
No 217
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=37.44 E-value=45 Score=15.04 Aligned_cols=19 Identities=26% Similarity=0.270 Sum_probs=15.1
Q ss_pred cccHHHHHHHHHHcCCCCC
Q 032995 86 YLVPDNVYEALVKIGFSLD 104 (129)
Q Consensus 86 ~i~~~e~~~~l~~~~~~~~ 104 (129)
.++..+++..|+..|.+.+
T Consensus 3 ~l~~~~Lk~~l~~~gl~~~ 21 (35)
T smart00513 3 KLKVSELKDELKKRGLSTS 21 (35)
T ss_pred cCcHHHHHHHHHHcCCCCC
Confidence 4677889999999887764
No 218
>TIGR01209 RNA ligase, Pab1020 family. Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity.
Probab=36.47 E-value=1.8e+02 Score=21.57 Aligned_cols=105 Identities=11% Similarity=0.139 Sum_probs=62.1
Q ss_pred HhhhCCCCCCcccHHHHHHHHHhCCCCC-------CHH----HHHHHHHHhcCCCCCcccHH---------HHHHHHHHH
Q 032995 11 FDRVDSEKTGSIAAAQLKHAFAVGNLDF-------SLS----VVQQMIRMYDFDRNGTMSFE---------EFVELNKFL 70 (129)
Q Consensus 11 F~~~d~~~~g~i~~~e~~~~l~~~~~~~-------~~~----~~~~~~~~~d~~~~~~i~~~---------ef~~~~~~~ 70 (129)
|..+|.+....++..+-..++...|.+. +.. .+..++..++..+...|=++ -|.....+.
T Consensus 163 FDI~d~~t~~~L~~~er~~l~e~yglp~Vpvlg~~~~~~~~~~~~eii~~L~~~gREGVVlK~~~~~~~~~KYtT~~~n~ 242 (374)
T TIGR01209 163 FDIREGKTNRSLPVEERLELAEKYGLPHVEILGVYTADEAVEEIYEIIERLNKEGREGVVMKDPEMRVKPLKYTTSYANI 242 (374)
T ss_pred EEEEECCCCccCCHHHHHHHHHHCCCCccceeeEEcHHHHHHHHHHHHHHhhhcCcceEEEcCccccCCcceeecCccCh
Confidence 3444445578899999999999876643 333 34455555554433223221 122233456
Q ss_pred HHHHHHhhhccC-CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 032995 71 LKVQHAFSDLER-GRGYLVPDNVYEALVKIGFSLDSPAFYTVCEVC 115 (129)
Q Consensus 71 ~~~~~~f~~~d~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 115 (129)
..++.+|+.+-+ +.+++...=++.++...-...++++..+.....
T Consensus 243 ~Di~~~~~~~~d~g~df~~sRi~Re~f~~~E~~~~~~e~~~ra~~L 288 (374)
T TIGR01209 243 NDIKYAARYFFELGRDFFFSRILREAFQSYEFGEKGEEFRRRAKEL 288 (374)
T ss_pred HHHHHHHhhccccCchHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 778888887754 777777666666666655566666655444433
No 219
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=36.31 E-value=86 Score=17.94 Aligned_cols=43 Identities=9% Similarity=0.080 Sum_probs=31.7
Q ss_pred HHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhch
Q 032995 75 HAFSDLERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCEVCTS 117 (129)
Q Consensus 75 ~~f~~~d~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~ 117 (129)
++|+........++.+-|+.++.-+..++++..+-++++.+..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5555544345557888888888888888888888888887754
No 220
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=35.14 E-value=94 Score=18.04 Aligned_cols=75 Identities=9% Similarity=0.045 Sum_probs=46.5
Q ss_pred CcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHhhhcc-C--CCCcccHHHHHHHH
Q 032995 20 GSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLE-R--GRGYLVPDNVYEAL 96 (129)
Q Consensus 20 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~f~~~d-~--~~g~i~~~e~~~~l 96 (129)
..+...+++++.+.+| +++..+..+-.....+ .. ++..++++.+- . ..|. ...+..+|
T Consensus 16 ~~~~~~~wK~faR~lg--lse~~Id~I~~~~~~d-----~~----------Eq~~qmL~~W~~~~G~~a~--~~~Li~aL 76 (97)
T cd08316 16 DVMTLKDVKKFVRKSG--LSEPKIDEIKLDNPQD-----TA----------EQKVQLLRAWYQSHGKTGA--YRTLIKTL 76 (97)
T ss_pred HHcCHHHHHHHHHHcC--CCHHHHHHHHHcCCCC-----hH----------HHHHHHHHHHHHHhCCCch--HHHHHHHH
Confidence 3466778888888774 6777777766433222 12 22333334443 1 2232 46788999
Q ss_pred HHcCCCCCHHHHHHHHH
Q 032995 97 VKIGFSLDSPAFYTVCE 113 (129)
Q Consensus 97 ~~~~~~~~~~~~~~l~~ 113 (129)
+.++..-..+.++.++.
T Consensus 77 r~~~l~~~Ad~I~~~l~ 93 (97)
T cd08316 77 RKAKLCTKADKIQDIIE 93 (97)
T ss_pred HHccchhHHHHHHHHHH
Confidence 99998888888877765
No 221
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=35.08 E-value=49 Score=14.88 Aligned_cols=15 Identities=7% Similarity=0.240 Sum_probs=10.3
Q ss_pred CCcccHHHHHHHHHH
Q 032995 84 RGYLVPDNVYEALVK 98 (129)
Q Consensus 84 ~g~i~~~e~~~~l~~ 98 (129)
.|.|+.+|+.++...
T Consensus 2 ~~~i~~~~~~d~a~r 16 (33)
T PF09373_consen 2 SGTISKEEYLDMASR 16 (33)
T ss_pred CceecHHHHHHHHHH
Confidence 567777777766655
No 222
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=34.48 E-value=1e+02 Score=18.22 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=28.4
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhhch
Q 032995 87 LVPDNVYEALVKIGFSLDSPAFYTVCEVCTS 117 (129)
Q Consensus 87 i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~ 117 (129)
+|.+++..+|+..|..+++.-+..+++.+..
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLaG 47 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALNG 47 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHcC
Confidence 9999999999999999999999999998654
No 223
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=33.86 E-value=54 Score=14.89 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=13.9
Q ss_pred cccHHHHHHHHHHcCCCCC
Q 032995 86 YLVPDNVYEALVKIGFSLD 104 (129)
Q Consensus 86 ~i~~~e~~~~l~~~~~~~~ 104 (129)
.++..|++..|+..|.+.+
T Consensus 3 ~l~v~eLk~~l~~~gL~~~ 21 (35)
T PF02037_consen 3 KLTVAELKEELKERGLSTS 21 (35)
T ss_dssp TSHHHHHHHHHHHTTS-ST
T ss_pred cCcHHHHHHHHHHCCCCCC
Confidence 3667888999999887764
No 224
>PRK10945 gene expression modulator; Provisional
Probab=33.40 E-value=87 Score=17.15 Aligned_cols=16 Identities=13% Similarity=-0.058 Sum_probs=7.7
Q ss_pred CCcccHHHHHHHHHHc
Q 032995 84 RGYLVPDNVYEALVKI 99 (129)
Q Consensus 84 ~g~i~~~e~~~~l~~~ 99 (129)
...++..|+..+..++
T Consensus 32 ~~~L~~~E~~~f~~Aa 47 (72)
T PRK10945 32 KYELSDDELAVFYSAA 47 (72)
T ss_pred hccCCHHHHHHHHHHH
Confidence 3344445555555443
No 225
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=33.40 E-value=40 Score=22.20 Aligned_cols=45 Identities=18% Similarity=0.277 Sum_probs=35.0
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHH
Q 032995 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMI 47 (129)
Q Consensus 3 ~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 47 (129)
+.+..++.|..||+++=-..+-.++.+++...|.-.+...+..+.
T Consensus 53 KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~i 97 (188)
T COG2818 53 KREAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATI 97 (188)
T ss_pred hHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHHH
Confidence 466788899999998878888889999999887766655555544
No 226
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=32.59 E-value=58 Score=17.79 Aligned_cols=16 Identities=6% Similarity=0.345 Sum_probs=12.5
Q ss_pred CCCcccHHHHHHHHHh
Q 032995 18 KTGSIAAAQLKHAFAV 33 (129)
Q Consensus 18 ~~g~i~~~e~~~~l~~ 33 (129)
..|++.-+||..++..
T Consensus 27 ~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 27 ASGKLRGEEINSLLEA 42 (75)
T ss_pred HcCcccHHHHHHHHHH
Confidence 4588888888888765
No 227
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=32.30 E-value=82 Score=16.53 Aligned_cols=18 Identities=22% Similarity=0.206 Sum_probs=9.3
Q ss_pred CCcccHHHHHHHHHHcCC
Q 032995 84 RGYLVPDNVYEALVKIGF 101 (129)
Q Consensus 84 ~g~i~~~e~~~~l~~~~~ 101 (129)
++.++...+++.|...|+
T Consensus 42 ~~~~~~~~l~~~lD~~gI 59 (64)
T PF09494_consen 42 DRKVDPSKLKEWLDSQGI 59 (64)
T ss_pred cceeCHHHHHHHHHHCCc
Confidence 344555555555555443
No 228
>PRK10391 oriC-binding nucleoid-associated protein; Provisional
Probab=31.08 E-value=96 Score=16.91 Aligned_cols=27 Identities=4% Similarity=0.241 Sum_probs=15.4
Q ss_pred HHHHHHHHHcCCCCCH-HHHHHHHHhhc
Q 032995 90 DNVYEALVKIGFSLDS-PAFYTVCEVCT 116 (129)
Q Consensus 90 ~e~~~~l~~~~~~~~~-~~~~~l~~~~d 116 (129)
+-+..++..+.+.+++ .++..+..-+|
T Consensus 17 eTLEkv~e~~~y~L~~~~e~~~f~~AaD 44 (71)
T PRK10391 17 ESLEKLFDHLNYTLTDDQEIINMYRAAD 44 (71)
T ss_pred HHHHHHHHHhhcccCCHHHHHHHHHHHH
Confidence 3455555566666654 66666555555
No 229
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=31.08 E-value=1.3e+02 Score=18.39 Aligned_cols=12 Identities=8% Similarity=0.036 Sum_probs=4.9
Q ss_pred ccHHHHHHHHHH
Q 032995 87 LVPDNVYEALVK 98 (129)
Q Consensus 87 i~~~e~~~~l~~ 98 (129)
+|..++.-++..
T Consensus 68 LT~~Qi~Yl~~~ 79 (122)
T PF06648_consen 68 LTRSQIDYLYNR 79 (122)
T ss_pred cCHHHHHHHHHH
Confidence 444444433333
No 230
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=30.61 E-value=1.3e+02 Score=19.05 Aligned_cols=42 Identities=14% Similarity=0.229 Sum_probs=30.1
Q ss_pred ccHHHHHHHHHHHHHHHHHhhhcc-CCCCcccHHHHHHHHHHc
Q 032995 58 MSFEEFVELNKFLLKVQHAFSDLE-RGRGYLVPDNVYEALVKI 99 (129)
Q Consensus 58 i~~~ef~~~~~~~~~~~~~f~~~d-~~~g~i~~~e~~~~l~~~ 99 (129)
-....+...+..+..+..-....| .+.|+||..|++.+.-.+
T Consensus 56 ~~l~gW~q~~~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~i 98 (148)
T PF12486_consen 56 PQLDGWHQGMTQLQQLADRLNQLEEQRGKYMTISELKTAVYQI 98 (148)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHH
Confidence 445556667777777777777778 466779999988776553
No 231
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins. It is named after the proteins SWI3, RSC8 and MOIRA in which it was first recognised. This domain is predicted to mediate protein-protein interactions in the assembly of chromatin-protein complexes. The SWIRM domain can be linked to different domains, such as the ZZ-type zinc finger (IPR000433 from INTERPRO), the Myb DNA-binding domain (IPR001005 from INTERPRO), the HORMA domain (IPR003511 from INTERPRO), the amino-oxidase domain, the chromo domain (IPR000953 from INTERPRO), and the JAB1/PAD1 domain.; GO: 0005515 protein binding; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2L3D_A ....
Probab=30.15 E-value=47 Score=18.46 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=16.3
Q ss_pred HHHHhcCCCCCcccHHHHHHHHH--HHHHHHHHhhhcc
Q 032995 46 MIRMYDFDRNGTMSFEEFVELNK--FLLKVQHAFSDLE 81 (129)
Q Consensus 46 ~~~~~d~~~~~~i~~~ef~~~~~--~~~~~~~~f~~~d 81 (129)
++..+..+..+.++..+...++. ....+..+|..+.
T Consensus 42 il~~w~~n~~~~lt~~~~~~~i~~~d~~~~~ri~~FL~ 79 (86)
T PF04433_consen 42 ILAEWRKNPNKYLTKTDARKLIKGIDVNKIRRIYDFLE 79 (86)
T ss_dssp HHHHHHHHTTS---HHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCcccHHHHHHHccccCHHHHHHHHHHHH
Confidence 33333444556666666666555 2344444444443
No 232
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.50 E-value=1.4e+02 Score=19.53 Aligned_cols=49 Identities=12% Similarity=0.066 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH
Q 032995 65 ELNKFLLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCE 113 (129)
Q Consensus 65 ~~~~~~~~~~~~f~~~d-~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~ 113 (129)
.++++-+..+++|..|| ..=-..+.+++.+.+..-++--...-++.++.
T Consensus 47 tIL~Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~ 96 (179)
T TIGR00624 47 TVLRKRENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIA 96 (179)
T ss_pred HHHHhHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHH
Confidence 45667788999999999 55556777888888877664444444544444
No 233
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=29.50 E-value=1.5e+02 Score=20.27 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=31.6
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q 032995 82 RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCEVCT 116 (129)
Q Consensus 82 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d 116 (129)
+++|.+....+...+..+.-+++..|+.++-++..
T Consensus 163 ~gegQVpL~kL~~~l~KLp~~lt~~ev~~v~~RL~ 197 (224)
T PF13829_consen 163 NGEGQVPLRKLQKTLMKLPRNLTKAEVDAVNKRLR 197 (224)
T ss_pred CCCCceeHHHHHHHHHhCCccCCHHHHHHHHHHHH
Confidence 57899999999999999999999999999888764
No 234
>PF09873 DUF2100: Uncharacterized protein conserved in archaea (DUF2100); InterPro: IPR019210 This entry represents various hypothetical archaeal proteins, and has no known function.
Probab=29.45 E-value=1.4e+02 Score=20.05 Aligned_cols=59 Identities=12% Similarity=0.059 Sum_probs=27.9
Q ss_pred CCCcccHHHHHHHHHHHHHH-HHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q 032995 54 RNGTMSFEEFVELNKFLLKV-QHAFSDLERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCEVCT 116 (129)
Q Consensus 54 ~~~~i~~~ef~~~~~~~~~~-~~~f~~~d~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d 116 (129)
..|.|+-.+|...+..+-.. ..+++.. ..-.++.++-..+|+.+- -....+..++..|.
T Consensus 38 k~G~Id~~e~kkav~~liEAde~lYksa--P~H~L~~E~AkeFck~l~--~~~k~l~~iL~~FG 97 (215)
T PF09873_consen 38 KPGKIDVEEFKKAVYSLIEADEYLYKSA--PSHELNGEEAKEFCKLLF--KAQKHLDKILSDFG 97 (215)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHhcC--CcccccHhHHHHHHHHHH--HHHHHHHHHHHHcC
Confidence 45777777777666544222 2222222 334455555444444430 12344555555444
No 235
>PF11300 DUF3102: Protein of unknown function (DUF3102); InterPro: IPR021451 This entry is represented by Streptococcus phage 7201, Orf2. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=28.84 E-value=1.5e+02 Score=18.35 Aligned_cols=75 Identities=9% Similarity=0.130 Sum_probs=39.2
Q ss_pred cccHHHHHHHHHhCCCCCCHHHH---HHHHHHhcCCCC-------------CcccHHHHHHHHHHHHHHHHHhhhccCCC
Q 032995 21 SIAAAQLKHAFAVGNLDFSLSVV---QQMIRMYDFDRN-------------GTMSFEEFVELNKFLLKVQHAFSDLERGR 84 (129)
Q Consensus 21 ~i~~~e~~~~l~~~~~~~~~~~~---~~~~~~~d~~~~-------------~~i~~~ef~~~~~~~~~~~~~f~~~d~~~ 84 (129)
.+...+|..+++.. .+++...+ .+++..|..... ..++|.+-+.++..-+.-+..|-.-++-
T Consensus 38 ~l~HGef~~Wle~~-~~~s~rtA~~~M~va~~yg~~~~~~~~~~~~~~~~l~~L~~tqal~Ll~lpeeeR~~fi~~~dv- 115 (130)
T PF11300_consen 38 LLPHGEFGKWLEEE-VGYSQRTAQRFMQVAEEYGSNQSSSSDSDSSNSSALPNLSYTQALILLGLPEEEREEFIEENDV- 115 (130)
T ss_pred hCCHHHHHHHHHHH-cCcCHHHHHHHHHHHHHhCcccccCcccccccchHHHhhhHHHHHHHHcCCchHHHHHHHHhhh-
Confidence 36777888888842 24444444 445555533210 1244444444443224445555444432
Q ss_pred CcccHHHHHHHHH
Q 032995 85 GYLVPDNVYEALV 97 (129)
Q Consensus 85 g~i~~~e~~~~l~ 97 (129)
+.+|..|++++++
T Consensus 116 ~~Mt~REL~~avk 128 (130)
T PF11300_consen 116 ERMTVRELQQAVK 128 (130)
T ss_pred ccccHHHHHHHHh
Confidence 3388888887765
No 236
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=28.78 E-value=1.3e+02 Score=17.83 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=28.8
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHhhch
Q 032995 86 YLVPDNVYEALVKIGFSLDSPAFYTVCEVCTS 117 (129)
Q Consensus 86 ~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~ 117 (129)
.||.+.+..+|+..|..+.+.-+..+++.+..
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL~G 47 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAALED 47 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC
Confidence 79999999999999999999999999888654
No 237
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=28.53 E-value=1e+02 Score=16.50 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=23.9
Q ss_pred ccHHHHHHHHHHcCC-CCCHHHHHHHHHhhchhhHHHHhh
Q 032995 87 LVPDNVYEALVKIGF-SLDSPAFYTVCEVCTSIFYFKLKE 125 (129)
Q Consensus 87 i~~~e~~~~l~~~~~-~~~~~~~~~l~~~~d~~~~~~~~~ 125 (129)
++.+-++.+-..+|. +++++....+...+...+..-+++
T Consensus 4 ~~~esvk~iAes~Gi~~l~de~a~~La~dveyrlreiiq~ 43 (66)
T PF02969_consen 4 FSQESVKDIAESLGISNLSDEAAKALAEDVEYRLREIIQE 43 (66)
T ss_dssp --HHHHHHHHHHTT---B-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777897 678888888877776665555544
No 238
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=28.49 E-value=1.4e+02 Score=22.16 Aligned_cols=41 Identities=10% Similarity=0.144 Sum_probs=31.3
Q ss_pred HhhhccCCCCcccHHHHHHHHHHc----------------CCCCCHHHHHHHHHhhc
Q 032995 76 AFSDLERGRGYLVPDNVYEALVKI----------------GFSLDSPAFYTVCEVCT 116 (129)
Q Consensus 76 ~f~~~d~~~g~i~~~e~~~~l~~~----------------~~~~~~~~~~~l~~~~d 116 (129)
-+..||..++.++.+.+...|+.+ |..++.+++.++++.+-
T Consensus 146 ~Y~Yyd~~~~~~df~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~ 202 (396)
T COG1448 146 TYPYYDAETKGLDFDGMLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIK 202 (396)
T ss_pred eeeccccccccccHHHHHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHH
Confidence 456677556669988888888774 67889999999988663
No 239
>PHA02105 hypothetical protein
Probab=28.12 E-value=1e+02 Score=16.16 Aligned_cols=48 Identities=15% Similarity=0.248 Sum_probs=26.5
Q ss_pred cccHHHHHHHHHhCC---CCCCHHHHHHHHHHhcCCCC--CcccHHHHHHHHH
Q 032995 21 SIAAAQLKHAFAVGN---LDFSLSVVQQMIRMYDFDRN--GTMSFEEFVELNK 68 (129)
Q Consensus 21 ~i~~~e~~~~l~~~~---~~~~~~~~~~~~~~~d~~~~--~~i~~~ef~~~~~ 68 (129)
+++++++..++..-. .++..+.+.++-..+....- -.++|++|-+++.
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~p 56 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIMP 56 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhccccc
Confidence 456677777776532 34555555555555543322 2456777666553
No 240
>PHA01351 putative minor structural protein
Probab=27.78 E-value=3.4e+02 Score=22.26 Aligned_cols=32 Identities=9% Similarity=0.066 Sum_probs=23.2
Q ss_pred CCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHh
Q 032995 83 GRGYLVPDNVYEALVKI-GFSLDSPAFYTVCEV 114 (129)
Q Consensus 83 ~~g~i~~~e~~~~l~~~-~~~~~~~~~~~l~~~ 114 (129)
..|+|+.+.-...|..+ .+.++++|++.+=-.
T Consensus 1031 er~ki~ld~a~~ylqq~kqygltdeeiqlikln 1063 (1070)
T PHA01351 1031 EKHKIDLDTAQSYLQQLKKYGLTDEEIQLIKLN 1063 (1070)
T ss_pred HhccCCHHHHHHHHHHHHHcCCCHHHHHHHHhh
Confidence 46778888777777775 467999999865433
No 241
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=27.72 E-value=1e+02 Score=16.12 Aligned_cols=29 Identities=14% Similarity=0.205 Sum_probs=12.8
Q ss_pred cccHHHHHHHHHHc-----CCCCCHHHHHHHHHh
Q 032995 86 YLVPDNVYEALVKI-----GFSLDSPAFYTVCEV 114 (129)
Q Consensus 86 ~i~~~e~~~~l~~~-----~~~~~~~~~~~l~~~ 114 (129)
.++.+.+..+|+.+ +.+++.++++.++..
T Consensus 11 sl~l~RIh~mLkmf~~~~~~~~~s~~eL~~fL~~ 44 (60)
T PF08672_consen 11 SLPLDRIHSMLKMFPKDPGGYDISLEELQEFLDR 44 (60)
T ss_dssp SEEHHHHHHHHHHH-GGG--TT--HHHHHHHHHH
T ss_pred CCCHHHHHHHHHhccCCCCCCCCCHHHHHHHHHH
Confidence 34455544444443 244555555555543
No 242
>PRK10867 signal recognition particle protein; Provisional
Probab=27.64 E-value=2.7e+02 Score=21.01 Aligned_cols=18 Identities=6% Similarity=-0.007 Sum_probs=13.9
Q ss_pred CCCCCHHHHHHHHHhhch
Q 032995 100 GFSLDSPAFYTVCEVCTS 117 (129)
Q Consensus 100 ~~~~~~~~~~~l~~~~d~ 117 (129)
|...+.++++.+++.|..
T Consensus 400 GsG~~~~~v~~ll~~~~~ 417 (433)
T PRK10867 400 GSGTTVQEVNRLLKQFEQ 417 (433)
T ss_pred cCCCCHHHHHHHHHHHHH
Confidence 566788888888888764
No 243
>PF02459 Adeno_terminal: Adenoviral DNA terminal protein; InterPro: IPR003391 The genome of adenovirus contains a protein covalently bound to the 5' end of each strand of the linear DNA molecule []. Since adenovirus DNA replication is initiated at the termini of the DNA molecule it has been proposed that the terminal protein serves as the primer for initiation of replication. However, the priming function now appears to reside in the precursor form of the terminal protein (pTP) found on the 5' ends of nascent DNA strands replicated in vitro [, ] and as a component of DNA-protein complexes isolated from virions of the protease-deficient adenovirus serotype 2 (Ad2) mutant tsl. The pTP is encoded by the leftward-transcribed strand of the viral genome and comprises part of a transcription unit that also encodes the single-strand DNA binding protein [].; GO: 0003677 DNA binding, 0006260 DNA replication
Probab=27.48 E-value=1.7e+02 Score=22.82 Aligned_cols=52 Identities=19% Similarity=0.303 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q 032995 63 FVELNKFLLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCEVCT 116 (129)
Q Consensus 63 f~~~~~~~~~~~~~f~~~d-~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d 116 (129)
|..+|. +-++.+-...+ .+.|.++.+|..++|..+++.=..-.++++++++-
T Consensus 449 F~~l~~--RI~~Dl~~~verag~~~~~~ee~e~~l~dI~y~~nSGDv~eIL~Q~~ 501 (548)
T PF02459_consen 449 FSQLMR--RISRDLLATVERAGRGELEEEEIEQFLADIAYRDNSGDVEEILRQAA 501 (548)
T ss_pred HHHHHH--HHHHHHHHHHhccCcccCCHHHHHHHHHHhcccccCCCHHHHHHHhh
Confidence 444444 33455556667 58888999999999999987766666777777663
No 244
>PF12307 DUF3631: Protein of unknown function (DUF3631); InterPro: IPR022081 This domain is found in uncharacterised proteins and in tripartite motif containing (TRIM) protein 41. This protein functions as an E3 ligase that catalyzes the ubiquitin-mediated degradation of protein kinase C [].
Probab=27.25 E-value=1.9e+02 Score=19.07 Aligned_cols=47 Identities=15% Similarity=0.230 Sum_probs=34.6
Q ss_pred HHHHHHHHhhhccCCCCcccHHHHHHHHHHc----------CCCCCHHHHHHHHHhhch
Q 032995 69 FLLKVQHAFSDLERGRGYLVPDNVYEALVKI----------GFSLDSPAFYTVCEVCTS 117 (129)
Q Consensus 69 ~~~~~~~~f~~~d~~~g~i~~~e~~~~l~~~----------~~~~~~~~~~~l~~~~d~ 117 (129)
.+..++.+|.. .+.-.|+..++...|... |.+++...+..+++.|+-
T Consensus 101 LL~DIr~vf~~--~~~~~i~T~dLl~~L~~~~e~pW~~~~~g~~Lt~r~La~~L~~ygI 157 (184)
T PF12307_consen 101 LLADIREVFEA--GGEDRIPTADLLDALNADEEAPWATWNRGKPLTPRQLAKLLKEYGI 157 (184)
T ss_pred hHHHHHHHHcc--CCCCcccHHHHHHHHHhCCCCchhhcCCCCCCCHHHHHHHHHHCCC
Confidence 34667777755 345668888888888774 467899999999998853
No 245
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=26.89 E-value=1.3e+02 Score=17.11 Aligned_cols=61 Identities=8% Similarity=0.009 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH------HHHHHHhhhcc-CCCCcccHHHHHHHHHHc
Q 032995 38 FSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL------LKVQHAFSDLE-RGRGYLVPDNVYEALVKI 99 (129)
Q Consensus 38 ~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~------~~~~~~f~~~d-~~~g~i~~~e~~~~l~~~ 99 (129)
++..++...++..-.+ +..|++.+|...+... .....+=..+| .++|+||.=||--..+-.
T Consensus 4 ITK~eA~~FW~~~Fg~-r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlF 71 (85)
T PF02761_consen 4 ITKAEAAEFWKTSFGK-RTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRLF 71 (85)
T ss_dssp -SSHHHHHHHHHHHTT--SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT
T ss_pred eccHHHHHHHHHHCCC-CeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHHH
Confidence 4455666666654333 3557888887777643 12223334556 578888887775544443
No 246
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=26.76 E-value=1.3e+02 Score=19.91 Aligned_cols=49 Identities=8% Similarity=0.061 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH
Q 032995 65 ELNKFLLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCE 113 (129)
Q Consensus 65 ~~~~~~~~~~~~f~~~d-~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~ 113 (129)
.++++-+.++++|..|| ..=-..+.+++.+.+..-++--...-++.++.
T Consensus 48 tIL~Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi~ 97 (187)
T PRK10353 48 TVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIG 97 (187)
T ss_pred HHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHHH
Confidence 35667789999999999 54455777888888877654334444444444
No 247
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=26.68 E-value=2.8e+02 Score=20.93 Aligned_cols=18 Identities=6% Similarity=-0.036 Sum_probs=14.0
Q ss_pred CCCCCHHHHHHHHHhhch
Q 032995 100 GFSLDSPAFYTVCEVCTS 117 (129)
Q Consensus 100 ~~~~~~~~~~~l~~~~d~ 117 (129)
|...+..++++++++|..
T Consensus 396 GsG~~~~~v~~ll~~~~~ 413 (437)
T PRK00771 396 GSGTTVEDVRELLKYYKM 413 (437)
T ss_pred cCCCCHHHHHHHHHHHHH
Confidence 566788888888888764
No 248
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=26.53 E-value=3.9e+02 Score=22.44 Aligned_cols=57 Identities=16% Similarity=0.050 Sum_probs=33.5
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHH--------HHHHHHhhhcc----CCCCcccHHHHHHHHHHc
Q 032995 43 VQQMIRMYDFDRNGTMSFEEFVELNKFL--------LKVQHAFSDLE----RGRGYLVPDNVYEALVKI 99 (129)
Q Consensus 43 ~~~~~~~~d~~~~~~i~~~ef~~~~~~~--------~~~~~~f~~~d----~~~g~i~~~e~~~~l~~~ 99 (129)
++.++..++....+..++++|+.++..+ ..+.+.|.... ...|.++..++...|..-
T Consensus 749 lrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~ 817 (890)
T KOG0035|consen 749 LRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLERE 817 (890)
T ss_pred HHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhh
Confidence 4556666666666777788877766432 22444444443 134777777776666553
No 249
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=26.39 E-value=2.9e+02 Score=20.85 Aligned_cols=29 Identities=14% Similarity=0.334 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 032995 39 SLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (129)
Q Consensus 39 ~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (129)
+.++.+.+....- .|..++.+|...+..+
T Consensus 311 ~~~~~~~~~~~~~---~~~f~l~d~~~q~~~~ 339 (428)
T TIGR00959 311 DEEEAKKLAEKMK---KGQFDLEDFLEQLRQI 339 (428)
T ss_pred CHHHHHHHHHHHH---hCCCCHHHHHHHHHHH
Confidence 3444445554442 3668888888877655
No 250
>PF03874 RNA_pol_Rpb4: RNA polymerase Rpb4; InterPro: IPR005574 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3AYH_A 3H3V_E 4A3C_D 3PO3_D 3HOX_D 2R92_D 3HOU_D 1Y77_D 2R7Z_D 3QT1_D ....
Probab=26.36 E-value=89 Score=18.37 Aligned_cols=16 Identities=0% Similarity=0.131 Sum_probs=7.5
Q ss_pred cCCCCCHHHHHHHHHh
Q 032995 99 IGFSLDSPAFYTVCEV 114 (129)
Q Consensus 99 ~~~~~~~~~~~~l~~~ 114 (129)
++..+++++++++++.
T Consensus 97 ~~~r~~ee~l~~iL~~ 112 (117)
T PF03874_consen 97 LESRFSEEDLEEILDL 112 (117)
T ss_dssp GTTTSTHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHH
Confidence 3334455555555443
No 251
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=26.16 E-value=1e+02 Score=15.54 Aligned_cols=32 Identities=13% Similarity=0.029 Sum_probs=21.8
Q ss_pred HHHHHHHc--CCCCCHHHHHHHHHhhchhhHHHH
Q 032995 92 VYEALVKI--GFSLDSPAFYTVCEVCTSIFYFKL 123 (129)
Q Consensus 92 ~~~~l~~~--~~~~~~~~~~~l~~~~d~~~~~~~ 123 (129)
+.++|..+ ...++++....++..||+-+..-+
T Consensus 15 L~dtLDeli~~~~I~p~La~kVL~~FDksi~~~L 48 (49)
T PF02268_consen 15 LTDTLDELIQEGKITPQLAMKVLEQFDKSINEAL 48 (49)
T ss_dssp HHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHh
Confidence 45555553 356889999999999998766543
No 252
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=25.42 E-value=1.4e+02 Score=17.21 Aligned_cols=27 Identities=7% Similarity=0.074 Sum_probs=13.4
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHhhch
Q 032995 91 NVYEALVKIGFSLDSPAFYTVCEVCTS 117 (129)
Q Consensus 91 e~~~~l~~~~~~~~~~~~~~l~~~~d~ 117 (129)
.++.+|+.-|..++...+..++..++.
T Consensus 13 ~Lk~lLk~rGi~v~~~~L~~f~~~i~~ 39 (90)
T PF02337_consen 13 ILKHLLKERGIRVKKKDLINFLSFIDK 39 (90)
T ss_dssp HHHHHHHCCT----HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCeeecHHHHHHHHHHHHH
Confidence 345555555666666666666666553
No 253
>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription]
Probab=25.16 E-value=2e+02 Score=18.53 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=23.2
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 032995 83 GRGYLVPDNVYEALVKIGFSLDSPAFYTVCEVC 115 (129)
Q Consensus 83 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 115 (129)
..-.|+.+++..+|..+|+.---+-+...+.+|
T Consensus 83 kRKTIngdDllwAm~tLGFe~Y~eplkiyL~kY 115 (168)
T KOG0869|consen 83 KRKTINGDDLLWAMSTLGFENYAEPLKIYLQKY 115 (168)
T ss_pred hcCcccHHHHHHHHHHcCcHhHHHHHHHHHHHH
Confidence 566799999999999999765444444444433
No 254
>PF15565 Imm16: Immunity protein 16
Probab=24.99 E-value=1.4e+02 Score=17.71 Aligned_cols=24 Identities=21% Similarity=0.088 Sum_probs=15.7
Q ss_pred HHHHHHHHHHH------HHHHHHhhhccCC
Q 032995 60 FEEFVELNKFL------LKVQHAFSDLERG 83 (129)
Q Consensus 60 ~~ef~~~~~~~------~~~~~~f~~~d~~ 83 (129)
.+.|-+++..+ +.+..+...||+.
T Consensus 15 ~e~Fe~~L~~l~~~~d~~~I~~L~~~F~D~ 44 (106)
T PF15565_consen 15 CEEFEEALNELAKYPDNDVIDDLCLIFDDE 44 (106)
T ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHhcCc
Confidence 35666665543 6788888888743
No 255
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=24.95 E-value=1.6e+02 Score=17.56 Aligned_cols=33 Identities=12% Similarity=0.165 Sum_probs=29.2
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHhhch
Q 032995 85 GYLVPDNVYEALVKIGFSLDSPAFYTVCEVCTS 117 (129)
Q Consensus 85 g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~ 117 (129)
.-|+.+.+..++...|..+.+.-+..++...+-
T Consensus 15 kei~e~~l~~vl~aaGveve~~r~k~lvaaLeg 47 (109)
T COG2058 15 KEITEDNLKSVLEAAGVEVEEARAKALVAALEG 47 (109)
T ss_pred CcCCHHHHHHHHHHcCCCccHHHHHHHHHHhcC
Confidence 379999999999999999999999998887753
No 256
>PF03800 Nuf2: Nuf2 family; InterPro: IPR005549 Members of this family are components of the mitotic spindle. It has been shown that Nuf2 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle. An arabidopsis protein has been included in this family that has previously not been identified as a member of this family, Q9C953 from SWISSPROT. The match is not strong, but in common with other members of this family contains coiled-coil to the C terminus of this region.; GO: 0007067 mitosis, 0000775 chromosome, centromeric region; PDB: 2VE7_D 3IZ0_D.
Probab=24.90 E-value=45 Score=20.65 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=10.5
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHH
Q 032995 87 LVPDNVYEALVKIGFSLDSPAFY 109 (129)
Q Consensus 87 i~~~e~~~~l~~~~~~~~~~~~~ 109 (129)
++..|+..+|+.+|.+++.+.+.
T Consensus 12 L~~~eIv~~L~~~~~~~t~~dl~ 34 (146)
T PF03800_consen 12 LSPDEIVNCLQECGIPVTEEDLK 34 (146)
T ss_dssp --HHHHHHHHHHHT--HHHHC--
T ss_pred CCHHHHHHHHHHCCCCcCHHHHc
Confidence 55666667777766554444443
No 257
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=24.26 E-value=1.3e+02 Score=16.16 Aligned_cols=48 Identities=21% Similarity=0.207 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhhccC-CCCcccHHHHHHHHHHc----CCCCCHHHHHHHHHhh
Q 032995 68 KFLLKVQHAFSDLER-GRGYLVPDNVYEALVKI----GFSLDSPAFYTVCEVC 115 (129)
Q Consensus 68 ~~~~~~~~~f~~~d~-~~g~i~~~e~~~~l~~~----~~~~~~~~~~~l~~~~ 115 (129)
+.+..+..+....+. ..--+-..+++.++..+ |...+++.+..+|++|
T Consensus 20 ~a~~~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 20 QALEHLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 334556666666653 22335566788888775 6667787888887665
No 258
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=24.12 E-value=1.7e+02 Score=17.55 Aligned_cols=50 Identities=12% Similarity=0.187 Sum_probs=36.7
Q ss_pred HhhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHH
Q 032995 11 FDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVE 65 (129)
Q Consensus 11 F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~ 65 (129)
|......++..++..++..+|...|.......+..+++.+. | .+.++.+.
T Consensus 9 YlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~----G-KdI~ELIa 58 (112)
T PTZ00373 9 YLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE----G-KTPHELIA 58 (112)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc----C-CCHHHHHH
Confidence 33444456677999999999999999998888888888773 1 45555443
No 259
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=24.11 E-value=77 Score=14.13 Aligned_cols=12 Identities=25% Similarity=0.188 Sum_probs=6.0
Q ss_pred cccHHHHHHHHH
Q 032995 86 YLVPDNVYEALV 97 (129)
Q Consensus 86 ~i~~~e~~~~l~ 97 (129)
.|+.+|++++|.
T Consensus 16 Gls~eeir~FL~ 27 (30)
T PF08671_consen 16 GLSKEEIREFLE 27 (30)
T ss_dssp T--HHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 366666666654
No 260
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=24.05 E-value=78 Score=20.32 Aligned_cols=44 Identities=14% Similarity=0.112 Sum_probs=26.3
Q ss_pred HHHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 032995 71 LKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCEVC 115 (129)
Q Consensus 71 ~~~~~~f~~~d-~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 115 (129)
.++..+++.+- .+...++..+|...|- .|..+|++++...+..+
T Consensus 85 ~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cG-VGV~VT~E~I~~~V~~~ 129 (164)
T PF04558_consen 85 LQLDAALKYLKSNPSEPIDVAEFEKACG-VGVVVTPEQIEAAVEKY 129 (164)
T ss_dssp HHHHHHHHHHHHHGG-G--HHHHHHTTT-TT----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHcC-CCeEECHHHHHHHHHHH
Confidence 67888888887 3455788887764432 46778999998888765
No 261
>PF09832 DUF2059: Uncharacterized protein conserved in bacteria (DUF2059); InterPro: IPR018637 This entry contains proteins that have no known function. ; PDB: 2X3O_B 3OAO_A.
Probab=23.20 E-value=1.1e+02 Score=15.80 Aligned_cols=31 Identities=3% Similarity=0.057 Sum_probs=18.3
Q ss_pred HHHHHHHHH-cCCCCCHHHHHHHHHhhchhhH
Q 032995 90 DNVYEALVK-IGFSLDSPAFYTVCEVCTSIFY 120 (129)
Q Consensus 90 ~e~~~~l~~-~~~~~~~~~~~~l~~~~d~~~~ 120 (129)
+++...+.. +...+|.+++..++.-+.+..=
T Consensus 3 ~~~~~~~~~~y~~~ft~~El~~i~~FY~Sp~G 34 (64)
T PF09832_consen 3 EKMIDQMAPIYAEHFTEEELDAILAFYESPLG 34 (64)
T ss_dssp HHHHHHHHHHHHHHS-HHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHh
Confidence 344444444 3345788888888888876433
No 262
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=22.73 E-value=48 Score=19.09 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=16.4
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCHHH
Q 032995 82 RGRGYLVPDNVYEALVKIGFSLDSPA 107 (129)
Q Consensus 82 ~~~g~i~~~e~~~~l~~~~~~~~~~~ 107 (129)
.+++.-+++++.+-|+.+|++++.++
T Consensus 37 TNns~~s~~~~~~~L~~~Gi~~~~~~ 62 (101)
T PF13344_consen 37 TNNSSRSREEYAKKLKKLGIPVDEDE 62 (101)
T ss_dssp ES-SSS-HHHHHHHHHHTTTT--GGG
T ss_pred eCCCCCCHHHHHHHHHhcCcCCCcCE
Confidence 36677788888888888887765543
No 263
>PRK10236 hypothetical protein; Provisional
Probab=22.36 E-value=2.7e+02 Score=19.19 Aligned_cols=48 Identities=6% Similarity=-0.069 Sum_probs=25.5
Q ss_pred HHHHHHhhhcc-CCCCcccHHH-----HHHHHHHcCCCCCHHHHHHHHHhhchh
Q 032995 71 LKVQHAFSDLE-RGRGYLVPDN-----VYEALVKIGFSLDSPAFYTVCEVCTSI 118 (129)
Q Consensus 71 ~~~~~~f~~~d-~~~g~i~~~e-----~~~~l~~~~~~~~~~~~~~l~~~~d~~ 118 (129)
+.+..+.+... +.+...+..+ |..++...-..++++|.+++.+.+...
T Consensus 91 eIL~DVc~~LKV~y~~~~st~~iE~~il~kll~~a~~kms~eE~~~L~~~l~~~ 144 (237)
T PRK10236 91 AILLDVSKRLKLKADKEMSTFEIEQQLLEQFLRNTWKKMDEEHKQEFLHAVDAR 144 (237)
T ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHhhh
Confidence 34445555555 3333333333 344444444567777777777776654
No 264
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.31 E-value=4.1e+02 Score=21.25 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHH
Q 032995 40 LSVVQQMIRMYDFDRNGTMSFEEFVEL 66 (129)
Q Consensus 40 ~~~~~~~~~~~d~~~~~~i~~~ef~~~ 66 (129)
+..++.++..+|. .+|.++-+++..+
T Consensus 17 d~~l~~~f~~~~~-~~~~~~~~~~~~~ 42 (646)
T KOG0039|consen 17 DDKLQTFFDMYDK-GDGKLTEEEVREL 42 (646)
T ss_pred hHHHHHHHHHHhh-hcCCccHHHHHHH
Confidence 3344555555544 4444544444443
No 265
>PHA02986 hypothetical protein; Provisional
Probab=22.03 E-value=2e+02 Score=17.64 Aligned_cols=56 Identities=21% Similarity=0.427 Sum_probs=31.5
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhchh
Q 032995 55 NGTMSFEEFVELNKFLLKVQHAFSDLERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCEVCTSI 118 (129)
Q Consensus 55 ~~~i~~~ef~~~~~~~~~~~~~f~~~d~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~ 118 (129)
+..|.++-|.++++.. ........+..+|.++++-.+...|.+..+.-+..-+|..
T Consensus 24 ~nei~~k~FsNLCkef--------i~~~k~~~~ik~~IK~ill~iP~sm~~~~W~PIanlcD~V 79 (141)
T PHA02986 24 DNEISFKYFSNLCKEF--------ISNKKKTTLIKEEIKKILLEIPDSMISQVWYPIANLCDCV 79 (141)
T ss_pred cchhhHHHHHHHHHHH--------HhcCCCchhHHHHHHHHHHhCChhHHHHHHHHHHhhccee
Confidence 3457777777766532 1112333455566777776666666666666665555543
No 266
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=21.91 E-value=1.4e+02 Score=15.84 Aligned_cols=15 Identities=20% Similarity=0.270 Sum_probs=6.0
Q ss_pred CCCcccHHHHHHHHH
Q 032995 83 GRGYLVPDNVYEALV 97 (129)
Q Consensus 83 ~~g~i~~~e~~~~l~ 97 (129)
++|.|+.+.+..-.+
T Consensus 36 ~~g~I~~d~~lK~vR 50 (65)
T PF09454_consen 36 QRGSIDLDTFLKQVR 50 (65)
T ss_dssp HTTSS-HHHHHHHHH
T ss_pred HcCCCCHHHHHHHHH
Confidence 344455444443333
No 267
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=21.89 E-value=1.8e+02 Score=17.04 Aligned_cols=36 Identities=11% Similarity=0.006 Sum_probs=30.1
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhchh
Q 032995 83 GRGYLVPDNVYEALVKIGFSLDSPAFYTVCEVCTSI 118 (129)
Q Consensus 83 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~ 118 (129)
..-.+|.+++..+++..|..+.+..+..+++.+..+
T Consensus 14 ~~~~~Tae~I~~ilkAaGveve~~~~~~f~~~L~gk 49 (103)
T cd05831 14 DGIEITADNINALLKAAGVNVEPYWPGLFAKALEGK 49 (103)
T ss_pred CCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcCC
Confidence 445699999999999999999998888888877654
No 268
>PRK08332 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=21.50 E-value=2.9e+02 Score=25.17 Aligned_cols=104 Identities=14% Similarity=0.136 Sum_probs=59.8
Q ss_pred HHHHHHHHHhCCCCCC----HHHHHHHHHHhcCCCCC-cccHHHHHHHHHHH-----HHHHHHhhhcc---------CCC
Q 032995 24 AAQLKHAFAVGNLDFS----LSVVQQMIRMYDFDRNG-TMSFEEFVELNKFL-----LKVQHAFSDLE---------RGR 84 (129)
Q Consensus 24 ~~e~~~~l~~~~~~~~----~~~~~~~~~~~d~~~~~-~i~~~ef~~~~~~~-----~~~~~~f~~~d---------~~~ 84 (129)
..++..+++..|.++. ...+..+.+....+..| .++|+-|..-...- ..-.+.+..+. ...
T Consensus 604 ~~d~~rF~~~IG~~l~~~~K~~kl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1740)
T PRK08332 604 YSSLLRFYELIGKNLQNSEKREKLEELLSKHNGGSFGLTLNFNAFKEWASKYGVEFKTNGSQTLAIIKNEKVSLGQWHRR 683 (1740)
T ss_pred cchHHHHHHHhchhhcchhHHHHHHHHHhhcCCCCcchhccHHHHHHHHhhcCEEEecCCceEEEEecccccccccccch
Confidence 3467778888877554 44567777777666665 56777665533221 11111222221 125
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHhhchhhHHHHhhhhcC
Q 032995 85 GYLVPDNVYEALVKIGFSLDSPAFYTVCEVCTSIFYFKLKEIFLT 129 (129)
Q Consensus 85 g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~~~~ 129 (129)
|.++..-+..+++.+......+++..+++... -...++++++|
T Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 726 (1740)
T PRK08332 684 GRVSKAVLVKMLRKLYETTKSEEVKRMLHLIE--GLEVVKEITVT 726 (1740)
T ss_pred hHHHHHHHHHHHHHHhhccchHHHHHHHHHHH--HHHHHHHHhhc
Confidence 66777777777888777777777777776643 23334444443
No 269
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3.2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.
Probab=21.21 E-value=1.1e+02 Score=20.02 Aligned_cols=55 Identities=11% Similarity=0.152 Sum_probs=35.1
Q ss_pred ccHHHHHHHHHHHHHHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 032995 58 MSFEEFVELNKFLLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCEVC 115 (129)
Q Consensus 58 i~~~ef~~~~~~~~~~~~~f~~~d-~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 115 (129)
+++. .++++.+.++++|..|| ..=-.++.+++.+++..-+.--...-+..++..+
T Consensus 39 LsW~---~Il~Kr~~~r~aF~~Fd~~~vA~~~e~~ie~l~~d~~iIRnr~KI~Avi~NA 94 (179)
T PF03352_consen 39 LSWS---TILKKREAFREAFAGFDPEKVAKMDEEDIERLMQDPGIIRNRRKIRAVINNA 94 (179)
T ss_dssp S-HH---HHHHTHHHHHHHTGGGHHHHHHT--HHHHHHHTTSTTSS--HHHHHHHHHHH
T ss_pred CCHH---HHHHHHHHHHHHHHCCCHHHHHcCCHHHHHHHhcCcchhhhHHHHHHHHHHH
Confidence 5555 35667789999999999 5555577778888877766555566666665544
No 270
>PF08812 YtxC: YtxC-like family; InterPro: IPR014199 This uncharacterised protein is one of a number of proteins conserved in all known endospore-forming Firmicutes (low-GC Gram-positive bacteria), including Carboxydothermus hydrogenoformans, and it is not found in non-endospore forming species. It is uniformly distributed in the mother cell cytoplasm in Bacillus subtilis [].
Probab=20.89 E-value=1.3e+02 Score=20.28 Aligned_cols=40 Identities=5% Similarity=0.101 Sum_probs=23.4
Q ss_pred HhhhccCCCCcccHHHHHHHHHHc-CCCC--CHHHHHHHHHhh
Q 032995 76 AFSDLERGRGYLVPDNVYEALVKI-GFSL--DSPAFYTVCEVC 115 (129)
Q Consensus 76 ~f~~~d~~~g~i~~~e~~~~l~~~-~~~~--~~~~~~~l~~~~ 115 (129)
.|..+|.....|+.+++..++..+ ..++ .+-.+..++.-+
T Consensus 148 ~f~l~D~~~~~i~~~~~~~~~~~~~~~~i~~eD~lIS~LItia 190 (221)
T PF08812_consen 148 SFILYDEEGKPISNEELEEYIDELFDQEINYEDLLISPLITIA 190 (221)
T ss_pred cEEEEcCCCCCCCHHHHHHHHHHhhcCCCcHHHHHHHHHHHhC
Confidence 566777556678888887777773 3333 333344444433
No 271
>KOG2351 consensus RNA polymerase II, fourth largest subunit [Transcription]
Probab=20.86 E-value=1.5e+02 Score=18.26 Aligned_cols=34 Identities=12% Similarity=0.218 Sum_probs=23.2
Q ss_pred CCcccH---HHHHHHHHHcCCCCCHHHHHHHHHhhch
Q 032995 84 RGYLVP---DNVYEALVKIGFSLDSPAFYTVCEVCTS 117 (129)
Q Consensus 84 ~g~i~~---~e~~~~l~~~~~~~~~~~~~~l~~~~d~ 117 (129)
=|.++. +|-+.+...++..+++++++.+++...+
T Consensus 93 lgnLcpetaEEAkaLvPSL~nkidD~~le~iL~dls~ 129 (134)
T KOG2351|consen 93 LGNLCPETAEEAKALVPSLENKIDDDELEQILKDLST 129 (134)
T ss_pred HhccCcccHHHHHHhccccccccCHHHHHHHHHHHHH
Confidence 355544 3445555557888999999999987654
No 272
>PF06837 Fijivirus_P9-2: Fijivirus P9-2 protein; InterPro: IPR009650 This family consists of several Fijivirus specific P9-2 proteins from Rice black streaked dwarf virus (RBSDV) and Fiji disease virus. The function of this family is unknown.
Probab=20.73 E-value=1e+02 Score=20.33 Aligned_cols=29 Identities=7% Similarity=-0.097 Sum_probs=17.9
Q ss_pred HHcCCCCCHHHHHHHHHhhchhhHHHHhh
Q 032995 97 VKIGFSLDSPAFYTVCEVCTSIFYFKLKE 125 (129)
Q Consensus 97 ~~~~~~~~~~~~~~l~~~~d~~~~~~~~~ 125 (129)
.....++|+.|+++.+.........+..+
T Consensus 40 ~ife~~~sdse~Dd~vd~lE~~ve~~~~p 68 (214)
T PF06837_consen 40 EIFERPLSDSELDDKVDKLETDVEDKVDP 68 (214)
T ss_pred HHHcccCcchhHHHHHHHHhhhHHhCCCH
Confidence 33456677777777777766655554443
No 273
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=20.54 E-value=1.5e+02 Score=15.49 Aligned_cols=30 Identities=10% Similarity=-0.005 Sum_probs=16.2
Q ss_pred CcccHHHHHHHHHHc-CCCCCHHHHHHHHHh
Q 032995 85 GYLVPDNVYEALVKI-GFSLDSPAFYTVCEV 114 (129)
Q Consensus 85 g~i~~~e~~~~l~~~-~~~~~~~~~~~l~~~ 114 (129)
..++.+|...++..+ ...+++.++..++--
T Consensus 13 ~~Ls~~e~~~~~~~i~~g~~s~~qiaAfL~a 43 (66)
T PF02885_consen 13 EDLSREEAKAAFDAILDGEVSDAQIAAFLMA 43 (66)
T ss_dssp ----HHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 557777877777774 345666666665543
No 274
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=20.48 E-value=3.4e+02 Score=19.58 Aligned_cols=60 Identities=15% Similarity=0.157 Sum_probs=33.9
Q ss_pred HHHHHHH--hCCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH------HHHHHHhhhccCCCCcccHHHHHHHH
Q 032995 26 QLKHAFA--VGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL------LKVQHAFSDLERGRGYLVPDNVYEAL 96 (129)
Q Consensus 26 e~~~~l~--~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~------~~~~~~f~~~d~~~g~i~~~e~~~~l 96 (129)
.|...+. +.|++.....+...+ ..|.++-+|=+.+++.. +.++..++.++ ||.+||..++
T Consensus 275 ~~~~y~~~~KfG~~~~~~~~s~~I------R~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg-----~t~~ef~~~~ 342 (343)
T TIGR03573 275 IFHDYLKYLKFGFGRATDHASIDI------RSGRITREEAIELVKEYDGEFPKEDLEYFLKYLG-----ISEEEFWKTV 342 (343)
T ss_pred HHHHHHHHhhcCCCcCchHHHHHH------HcCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC-----CCHHHHHHHh
Confidence 3444443 356554444444444 26778888877777653 34455555554 6777776654
No 275
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=20.42 E-value=1e+02 Score=13.57 Aligned_cols=13 Identities=8% Similarity=0.179 Sum_probs=7.9
Q ss_pred CCcccHHHHHHHH
Q 032995 84 RGYLVPDNVYEAL 96 (129)
Q Consensus 84 ~g~i~~~e~~~~l 96 (129)
.|.||.+|+...-
T Consensus 14 ~G~IseeEy~~~k 26 (31)
T PF09851_consen 14 KGEISEEEYEQKK 26 (31)
T ss_pred cCCCCHHHHHHHH
Confidence 5667776665443
No 276
>PF09061 Stirrup: Stirrup; InterPro: IPR015146 The Stirrup domain, found in the prokaryotic protein ribonucleotide reductase, has a molecular mass of 9 kDa and is folded into an alpha/beta structure. It allows for binding of the reductase to DNA via electrostatic interactions, since it has a predominance of positive charges distributed on its surface []. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1DQ3_A.
Probab=20.18 E-value=52 Score=17.64 Aligned_cols=29 Identities=10% Similarity=0.035 Sum_probs=14.4
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHH
Q 032995 85 GYLVPDNVYEALVKIGFSLDSPAFYTVCE 113 (129)
Q Consensus 85 g~i~~~e~~~~l~~~~~~~~~~~~~~l~~ 113 (129)
|.++..-+-.+|+.+......+++..|+.
T Consensus 48 grvskavlvkmlrkly~~tk~e~vkrmlh 76 (79)
T PF09061_consen 48 GRVSKAVLVKMLRKLYEATKNEEVKRMLH 76 (79)
T ss_dssp S-EEHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 45555555566665544444555555554
Done!