BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>032996
MEVKEMNEILSKNRVEDVSWLCSLSESEVDMLISLKLLILQRAKVIGHEELANKFDLKTL
RALGFILMEHLKEKVKDLSLFPGSAEPLAFVAGCNLLKCDNDDILTVEKLKTCLHIDLKR
WCFINSRIF

High Scoring Gene Products

Symbol, full name Information P value
AT1G80245 protein from Arabidopsis thaliana 4.5e-27

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  032996
        (129 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:505006233 - symbol:AT1G80245 species:3702 "Ara...   304  4.5e-27   1


>TAIR|locus:505006233 [details] [associations]
            symbol:AT1G80245 species:3702 "Arabidopsis thaliana"
            [GO:0000226 "microtubule cytoskeleton organization" evidence=IEA]
            [GO:0003674 "molecular_function" evidence=ND] [GO:0006626 "protein
            targeting to mitochondrion" evidence=RCA] InterPro:IPR007259
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000226 GO:GO:0005815
            GO:GO:0000922 PANTHER:PTHR19302 EMBL:BT026502 IPI:IPI00517185
            RefSeq:NP_001077852.1 RefSeq:NP_565234.1 RefSeq:NP_974189.1
            UniGene:At.33950 EnsemblPlants:AT1G80245.1
            EnsemblPlants:AT1G80245.2 EnsemblPlants:AT1G80245.3 GeneID:844365
            KEGG:ath:AT1G80245 TAIR:At1g80245 eggNOG:NOG319813
            HOGENOM:HOG000090369 InParanoid:Q0V7R8 OMA:RAKISGH PhylomeDB:Q0V7R8
            ProtClustDB:CLSN2689349 Genevestigator:Q0V7R8 Uniprot:Q0V7R8
        Length = 127

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 58/111 (52%), Positives = 82/111 (73%)

Query:     3 VKEMNEILSKNRVEDVSWLCSLSESEVDMLISLKLLILQRAKVIGHEELANKFDLKTLRA 62
             ++E+ +IL  NR +D++W CSLSESE+D+LISLK L +QRAK+ GH+ELA+KFDLK LR+
Sbjct:     1 MEELTQILKNNRTDDLTWFCSLSESELDLLISLKKLAIQRAKISGHQELADKFDLKLLRS 60

Query:    63 LGFILMEHLKEKVK-DLSLFPGSAEPLAFVAGCNLLKCDNDDILTVEKLKT 112
             LG +LMEH +++V+ D SL P     L  +  CNLLK   DD + +E++ T
Sbjct:    61 LGLVLMEHARKRVQNDTSLAPSVVHQLRLLDNCNLLKTHVDDAVDIEEILT 111


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.139   0.408    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      129       129   0.00091  102 3  11 22  0.49    30
                                                     29  0.41    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  573 (61 KB)
  Total size of DFA:  130 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.99u 0.09s 15.08t   Elapsed:  00:00:01
  Total cpu time:  14.99u 0.09s 15.08t   Elapsed:  00:00:01
  Start:  Fri May 10 10:00:50 2013   End:  Fri May 10 10:00:51 2013

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