BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032996
(129 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%)
Query: 13 NRVEDVSWLCSLSESEVDMLISLKLLILQRAKVIGHEELANKFDLKTLRALGFILMEHLK 72
+V+ ++ + ++ + S+KL +RAK EE N D KT+ AL + +E L+
Sbjct: 57 GKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQ 116
Query: 73 EKVK 76
+VK
Sbjct: 117 SQVK 120
>pdb|2HAU|A Chain A, Apo-Human Serum Transferrin (Non-Glycosylated)
pdb|2HAU|B Chain B, Apo-Human Serum Transferrin (Non-Glycosylated)
Length = 676
Score = 29.3 bits (64), Expect = 0.57, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 69 EHLKEKVKDLSLFPGSAEPLAFVAGCNLLKCDNDDILTVEKLKTCLHIDLKR 120
++L EK +L G+ +P+ A C+L + N ++T + + C+H L++
Sbjct: 549 KNLNEKDYELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDKEACVHKILRQ 600
>pdb|4H0W|A Chain A, Bismuth Bound Human Serum Transferrin
Length = 679
Score = 29.3 bits (64), Expect = 0.60, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 69 EHLKEKVKDLSLFPGSAEPLAFVAGCNLLKCDNDDILTVEKLKTCLHIDLKR 120
++L EK +L G+ +P+ A C+L + N ++T + + C+H L++
Sbjct: 552 KNLNEKDYELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDKEACVHKILRQ 603
>pdb|3QYT|A Chain A, Diferric Bound Human Serum Transferrin
Length = 679
Score = 29.3 bits (64), Expect = 0.60, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 69 EHLKEKVKDLSLFPGSAEPLAFVAGCNLLKCDNDDILTVEKLKTCLHIDLKR 120
++L EK +L G+ +P+ A C+L + N ++T + + C+H L++
Sbjct: 552 KNLNEKDYELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDKEACVHKILRQ 603
>pdb|3VE1|B Chain B, The 2.9 Angstrom Crystal Structure Of Transferrin Binding
Protein B (Tbpb) From Serogroup B M982 Neisseria
Meningitidis In Complex With Human Transferrin
pdb|3VE1|D Chain D, The 2.9 Angstrom Crystal Structure Of Transferrin Binding
Protein B (Tbpb) From Serogroup B M982 Neisseria
Meningitidis In Complex With Human Transferrin
Length = 679
Score = 29.3 bits (64), Expect = 0.60, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 69 EHLKEKVKDLSLFPGSAEPLAFVAGCNLLKCDNDDILTVEKLKTCLHIDLKR 120
++L EK +L G+ +P+ A C+L + N ++T + + C+H L++
Sbjct: 552 KNLNEKDYELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDKEACVHKILRQ 603
>pdb|2HAV|A Chain A, Apo-Human Serum Transferrin (Glycosylated)
pdb|2HAV|B Chain B, Apo-Human Serum Transferrin (Glycosylated)
Length = 676
Score = 29.3 bits (64), Expect = 0.60, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 69 EHLKEKVKDLSLFPGSAEPLAFVAGCNLLKCDNDDILTVEKLKTCLHIDLKR 120
++L EK +L G+ +P+ A C+L + N ++T + + C+H L++
Sbjct: 549 KNLNEKDYELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDKEACVHKILRQ 600
>pdb|3S9L|C Chain C, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 2
pdb|3S9L|D Chain D, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 2
pdb|3S9M|C Chain C, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 1
pdb|3S9M|D Chain D, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 1
pdb|3S9N|C Chain C, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Room Temperature
pdb|3S9N|D Chain D, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Room Temperature
Length = 693
Score = 29.3 bits (64), Expect = 0.63, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 69 EHLKEKVKDLSLFPGSAEPLAFVAGCNLLKCDNDDILTVEKLKTCLHIDLKR 120
++L EK +L G+ +P+ A C+L + N ++T + + C+H L++
Sbjct: 566 KNLNEKDYELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDKEACVHKILRQ 617
>pdb|3V83|A Chain A, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|B Chain B, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|C Chain C, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|D Chain D, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|E Chain E, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|F Chain F, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V8X|B Chain B, The Crystal Structure Of Transferrin Binding Protein A
(Tbpa) From Neisserial Meningitidis Serogroup B In
Complex With Full Length Human Transferrin
Length = 698
Score = 29.3 bits (64), Expect = 0.64, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 69 EHLKEKVKDLSLFPGSAEPLAFVAGCNLLKCDNDDILTVEKLKTCLHIDLKR 120
++L EK +L G+ +P+ A C+L + N ++T + + C+H L++
Sbjct: 571 KNLNEKDYELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDKEACVHKILRQ 622
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 34 SLKLLILQRAKVIGHEELANKFDLKTLRALGFILMEHLKEKVK 76
S+KL +RAK EE N D KT+ AL + +E L+ +VK
Sbjct: 732 SVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQSQVK 774
>pdb|3V89|B Chain B, The Crystal Structure Of Transferrin Binding Protein A
(Tbpa) From Neisseria Meningitidis Serogroup B In
Complex With The C-Lobe Of Human Transferrin
Length = 343
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 69 EHLKEKVKDLSLFPGSAEPLAFVAGCNLLKCDNDDILTVEKLKTCLHIDLKR 120
++L EK +L G+ +P+ A C+L + N ++T + + C+H L++
Sbjct: 216 KNLNEKDYELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDKEACVHKILRQ 267
>pdb|3SKP|A Chain A, The Structure Of Apo-Human Transferrin C-Lobe With Bound
Sulfate Ions
Length = 342
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 69 EHLKEKVKDLSLFPGSAEPLAFVAGCNLLKCDNDDILTVEKLKTCLHIDLKR 120
++L EK +L G+ +P+ A C+L + N ++T + + C+H L++
Sbjct: 215 KNLNEKDYELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDKEACVHKILRQ 266
>pdb|3LIC|A Chain A, Crystal Structure Of The Extracellular Domain Of The
Putative Histidine Kinase Sohk1s-Z6
Length = 274
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 13/55 (23%)
Query: 66 ILMEHLKEKVKDLSLFPGSAEPLAFVAGCNLLKCDNDDILTVEKLKTCLHIDLKR 120
L+EH + + LS F G L D DDI EKLKT L ++R
Sbjct: 27 FLLEHAQANTQGLSDFIG-------------LLADKDDINNPEKLKTVLTNRIQR 68
>pdb|1V1F|A Chain A, Structure Of The Arabidopsis Thaliana Sos3 Complexed With
Calcium(Ii) And Manganese(Ii) Ions
pdb|1V1G|A Chain A, Structure Of The Arabidopsis Thaliana Sos3 Complexed With
Calcium(Ii) Ion
Length = 222
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 48 HEELANKFDLKTLRALGFILMEHLKEKV 75
HE++ F L LR GFI E LKE V
Sbjct: 110 HEKVKFAFKLYDLRQTGFIEREELKEMV 137
>pdb|3P2O|A Chain A, Crystal Structure Of Fold Bifunctional Protein From
Campylobacter Jejuni
pdb|3P2O|B Chain B, Crystal Structure Of Fold Bifunctional Protein From
Campylobacter Jejuni
Length = 285
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 74 KVKDLSLFPGSAEPLAFVAGC-NLLKCD 100
K KDLSL+ A+ + AGC NLL+ D
Sbjct: 193 KTKDLSLYTRQADLIIVAAGCVNLLRSD 220
>pdb|2EHB|A Chain A, The Structure Of The C-Terminal Domain Of The Protein
Kinase Atsos2 Bound To The Calcium Sensor Atsos3
Length = 207
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 48 HEELANKFDLKTLRALGFILMEHLKEKV 75
HE++ F L LR GFI E LKE V
Sbjct: 110 HEKVKFAFKLYDLRQTGFIEREELKEMV 137
>pdb|3BPK|A Chain A, Crystal Structure Of Nitrilotriacetate Monooxygenase
Component B From Bacillus Cereus
pdb|3BPK|B Chain B, Crystal Structure Of Nitrilotriacetate Monooxygenase
Component B From Bacillus Cereus
Length = 206
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 39 ILQRAKVIGHEELANKFDLKTLRALGFILMEHLKEKVKDLSLFPGSAEPLAFVAGCNLLK 98
+L+RA +G E + DL R + F + EHL EK + + +P++ +AG N K
Sbjct: 139 VLERAIPLGGTEDSPACDLLIGRVVRFHVAEHLYEKGR---IHAEGLKPISRLAGHNYAK 195
>pdb|2QHP|A Chain A, Crystal Structure Of Fructokinase (Np_810670.1) From
Bacteroides Thetaiotaomicron Vpi-5482 At 1.80 A
Resolution
Length = 296
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 94 CNLLKCDNDDILTVEKLKTCLHIDLKRWCFI 124
CN+LK ++++++T+ + IDL+ C+I
Sbjct: 172 CNILKINDEELVTISRXFGYPGIDLQDKCWI 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,432,863
Number of Sequences: 62578
Number of extensions: 115610
Number of successful extensions: 326
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 311
Number of HSP's gapped (non-prelim): 25
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)