Query 032996
Match_columns 129
No_of_seqs 14 out of 16
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 13:48:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032996.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032996hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xa6_A KH domain-containing\,R 20.3 29 0.001 21.6 0.6 15 78-92 18-32 (41)
2 2fho_A Spliceosomal protein SF 17.7 42 0.0014 21.2 0.9 11 22-32 20-30 (47)
3 1b6c_B TGF-B superfamily recep 15.3 2.9E+02 0.0099 19.6 5.0 19 97-115 314-332 (342)
4 1x9f_D Globin C, hemoglobin ch 15.2 1.8E+02 0.006 19.3 3.6 46 23-77 76-121 (140)
5 2keo_A Probable E3 ubiquitin-p 14.8 70 0.0024 22.3 1.6 34 95-129 13-49 (112)
6 1nb0_A Hypothetical protein FL 13.5 51 0.0017 24.0 0.6 16 105-120 109-124 (147)
7 3hug_A RNA polymerase sigma fa 13.4 2.5E+02 0.0087 17.2 4.8 55 18-78 32-88 (92)
8 3hmm_A TGF-beta receptor type- 13.3 3.8E+02 0.013 19.9 5.4 18 97-114 275-292 (303)
9 1wi9_A Protein C20ORF116 homol 13.0 37 0.0013 22.9 -0.3 24 39-62 15-38 (72)
10 3phx_B Ubiquitin-like protein 12.8 95 0.0032 18.5 1.6 23 101-123 21-49 (79)
No 1
>2xa6_A KH domain-containing\,RNA-binding\,signal transduction-associated protein 1; transcription, STAR proteins, CD44, cell cycle; NMR {Homo sapiens}
Probab=20.31 E-value=29 Score=21.62 Aligned_cols=15 Identities=20% Similarity=0.250 Sum_probs=13.2
Q ss_pred cCCCCCcccchhccc
Q 032996 78 LSLFPGSAEPLAFVA 92 (129)
Q Consensus 78 ~Sl~p~v~~~lalld 92 (129)
+|++|+.++..+|++
T Consensus 18 ~sLdPsf~Ha~RLl~ 32 (41)
T 2xa6_A 18 DSLDPSFTHAMQLLT 32 (41)
T ss_dssp HHSCTTCHHHHHHHH
T ss_pred hccCchHHHHHHHHH
Confidence 499999999999875
No 2
>2fho_A Spliceosomal protein SF3B155; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=17.67 E-value=42 Score=21.23 Aligned_cols=11 Identities=36% Similarity=0.592 Sum_probs=9.1
Q ss_pred hccCcchhHHH
Q 032996 22 CSLSESEVDML 32 (129)
Q Consensus 22 csLSEsELDmL 32 (129)
+-||+.|||++
T Consensus 20 rpltDEeLD~~ 30 (47)
T 2fho_A 20 RPLSDEELDAM 30 (47)
T ss_dssp CCSCTTHHHHH
T ss_pred CCCCHHHHHHh
Confidence 34999999986
No 3
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=15.31 E-value=2.9e+02 Score=19.55 Aligned_cols=19 Identities=21% Similarity=0.233 Sum_probs=13.8
Q ss_pred ccCCCCccccHHHHHhhhh
Q 032996 97 LKCDNDDILTVEKLKTCLH 115 (129)
Q Consensus 97 Lk~~~~d~~~iEEl~t~i~ 115 (129)
|.-+|++-.+++|+...+.
T Consensus 314 l~~dp~~Rps~~~i~~~L~ 332 (342)
T 1b6c_B 314 WYANGAARLTALRIKKTLS 332 (342)
T ss_dssp CCSSGGGSCCHHHHHHHHH
T ss_pred hccChhhCCCHHHHHHHHH
Confidence 4577888888888877654
No 4
>1x9f_D Globin C, hemoglobin chain D1, globin III, extracellular; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_D*
Probab=15.19 E-value=1.8e+02 Score=19.31 Aligned_cols=46 Identities=13% Similarity=0.158 Sum_probs=30.8
Q ss_pred ccCcchhHHHHhHHHHHHHHHHhhCcHHHhhhCChHHHHHHHHHHHHHHHHHhhh
Q 032996 23 SLSESEVDMLISLKLLILQRAKVIGHEELANKFDLKTLRALGFILMEHLKEKVKD 77 (129)
Q Consensus 23 sLSEsELDmLIsLK~L~~~RAk~~Gh~~LA~kFDLk~LRAlGlVLmE~LKervkd 77 (129)
+|.+++ .+--.|+.|.-++++ ...+......+|-+|++++++.+.+
T Consensus 76 ~ld~~~-~l~~~l~~L~~~H~~--------~gV~p~~f~~~~~~Ll~~l~~~lg~ 121 (140)
T 1x9f_D 76 MLDTPD-MLAAQLAHLKVQHVE--------RNLKPEFFDIFLKHLLHVLGDRLGT 121 (140)
T ss_dssp TTTCHH-HHHHHHHHHHHHHHT--------SCCCHHHHHHHHHHHHHHHHHHHGG
T ss_pred HcCCHH-HHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 344433 233445555555443 3467888899999999999998875
No 5
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown function, HERC2 cytochrome domain, ligase binding, phosphoprotein; NMR {Homo sapiens}
Probab=14.83 E-value=70 Score=22.31 Aligned_cols=34 Identities=18% Similarity=0.414 Sum_probs=19.9
Q ss_pred ccccCCCC---ccccHHHHHhhhhccccceeeeccccC
Q 032996 95 NLLKCDND---DILTVEKLKTCLHIDLKRWCFINSRIF 129 (129)
Q Consensus 95 NLLk~~~~---d~~~iEEl~t~i~~d~~r~~~~~~~~~ 129 (129)
|++.|... -..+.+|+..--..+ .-|..|+.++|
T Consensus 13 ~~~~c~m~~~~~~~t~~Ev~~h~~~~-d~wvvi~G~VY 49 (112)
T 2keo_A 13 NLYFQGNNEKVTLVRIADLENHNNDG-GFWTVIDGKVY 49 (112)
T ss_dssp --------CCCCEECHHHHHHHHHHT-CCEEEETTEEE
T ss_pred ccccccCCCCCCccCHHHHHHhcCCC-CEEEEECCEEE
Confidence 56666554 357999999877654 58999987754
No 6
>1nb0_A Hypothetical protein FLJ11149; beta barrel, transferase; HET: ADP; 1.70A {Homo sapiens} SCOP: b.43.5.1 PDB: 1nb9_A* 1p4m_A* 1q9s_A*
Probab=13.54 E-value=51 Score=23.98 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=13.5
Q ss_pred ccHHHHHhhhhccccc
Q 032996 105 LTVEKLKTCLHIDLKR 120 (129)
Q Consensus 105 ~~iEEl~t~i~~d~~r 120 (129)
.|+|||++||..|++.
T Consensus 109 ~sle~L~~qI~~D~~~ 124 (147)
T 1nb0_A 109 DSLESLISAIQGDIEE 124 (147)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 4799999999999753
No 7
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=13.39 E-value=2.5e+02 Score=17.18 Aligned_cols=55 Identities=13% Similarity=0.164 Sum_probs=37.8
Q ss_pred hhhhhccCcchhHHHHhHHHHHHHHHHhhCcHHHhhhCCh--HHHHHHHHHHHHHHHHHhhhc
Q 032996 18 VSWLCSLSESEVDMLISLKLLILQRAKVIGHEELANKFDL--KTLRALGFILMEHLKEKVKDL 78 (129)
Q Consensus 18 ~~WlcsLSEsELDmLIsLK~L~~~RAk~~Gh~~LA~kFDL--k~LRAlGlVLmE~LKervkd~ 78 (129)
...+..|++.+-.++. ++...-...++.|+.++. .+.+..=--.+..||+.++..
T Consensus 32 ~~~l~~L~~~~r~vl~------l~~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~~~ 88 (92)
T 3hug_A 32 ADALAQLSAEHRAVIQ------RSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQEL 88 (92)
T ss_dssp HHHHHTSCHHHHHHHH------HHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHH------HHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567788888876543 445677788999998776 566655555667777776654
No 8
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=13.33 E-value=3.8e+02 Score=19.85 Aligned_cols=18 Identities=22% Similarity=0.250 Sum_probs=13.3
Q ss_pred ccCCCCccccHHHHHhhh
Q 032996 97 LKCDNDDILTVEKLKTCL 114 (129)
Q Consensus 97 Lk~~~~d~~~iEEl~t~i 114 (129)
+.-+|..-.|++|+...+
T Consensus 275 l~~dP~~RPt~~ei~~~L 292 (303)
T 3hmm_A 275 WYANGAARLTALRIKKTL 292 (303)
T ss_dssp CCSSGGGSCCHHHHHHHH
T ss_pred cccCHhHCcCHHHHHHHH
Confidence 556788888888887655
No 9
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=13.00 E-value=37 Score=22.93 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=20.0
Q ss_pred HHHHHHhhCcHHHhhhCChHHHHH
Q 032996 39 ILQRAKVIGHEELANKFDLKTLRA 62 (129)
Q Consensus 39 ~~~RAk~~Gh~~LA~kFDLk~LRA 62 (129)
.|...|+.-.++||..|.+++=-+
T Consensus 15 yIk~~Kvv~LedLA~~F~l~t~~~ 38 (72)
T 1wi9_A 15 YIKKSKVVLLEDLAFQMGLRTQDA 38 (72)
T ss_dssp HHHHCSEECHHHHHHHHCSCHHHH
T ss_pred HHHHcCeeeHHHHHHHhCCChHHH
Confidence 367789999999999999988443
No 10
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=12.81 E-value=95 Score=18.46 Aligned_cols=23 Identities=30% Similarity=0.137 Sum_probs=16.1
Q ss_pred CCccccHHHHHhhhhc------cccceee
Q 032996 101 NDDILTVEKLKTCLHI------DLKRWCF 123 (129)
Q Consensus 101 ~~d~~~iEEl~t~i~~------d~~r~~~ 123 (129)
.+.+.++++||+.|.. +.+|+.|
T Consensus 21 v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 49 (79)
T 3phx_B 21 VRLTQTVAHLKQQVSGLEGVQDDLFWLTF 49 (79)
T ss_dssp ECTTSBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred ECCcChHHHHHHHHHhhcCCCHHHEEEEE
Confidence 3445688899888754 6677766
Done!