Query 032996
Match_columns 129
No_of_seqs 14 out of 16
Neff 2.2
Searched_HMMs 13730
Date Mon Mar 25 13:48:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032996.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032996hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dn3b1 a.1.1.2 (B:2-146) Hemo 37.1 25 0.0019 22.5 4.6 48 20-78 73-120 (145)
2 d1itha_ a.1.1.2 (A:) Hemoglobi 21.1 43 0.0031 21.4 3.4 33 44-76 88-120 (141)
3 d1v4wb_ a.1.1.2 (B:) Hemoglobi 20.9 94 0.0069 19.4 5.5 24 55-78 98-121 (146)
4 d1wi9a_ a.4.5.47 (A:) Hypothet 20.3 9.7 0.00071 24.4 -0.1 25 39-63 15-39 (72)
5 d1gvha1 a.1.1.2 (A:1-146) Flav 18.6 1.1E+02 0.0078 19.1 5.9 47 22-77 66-112 (146)
6 d1gcvb_ a.1.1.2 (B:) Hemoglobi 18.3 1.1E+02 0.0082 19.2 5.3 41 31-78 71-111 (136)
7 d1ut7a_ b.143.1.1 (A:) No apic 17.2 57 0.0041 21.7 3.4 48 67-126 31-78 (166)
8 d1bl0a1 a.4.1.8 (A:9-62) MarA 17.0 7.9 0.00057 21.2 -1.0 31 89-119 4-34 (54)
9 d1wb9a1 a.113.1.1 (A:270-566) 17.0 32 0.0023 22.9 2.0 23 18-40 270-294 (297)
10 d2bgxa2 d.118.1.1 (A:7-179) Pr 16.9 29 0.0021 23.7 1.8 43 23-65 115-170 (173)
No 1
>d2dn3b1 a.1.1.2 (B:2-146) Hemoglobin, beta-chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.09 E-value=25 Score=22.47 Aligned_cols=48 Identities=21% Similarity=0.233 Sum_probs=33.7
Q ss_pred hhhccCcchhHHHHhHHHHHHHHHHhhCcHHHhhhCChHHHHHHHHHHHHHHHHHhhhc
Q 032996 20 WLCSLSESEVDMLISLKLLILQRAKVIGHEELANKFDLKTLRALGFILMEHLKEKVKDL 78 (129)
Q Consensus 20 WlcsLSEsELDmLIsLK~L~~~RAk~~Gh~~LA~kFDLk~LRAlGlVLmE~LKervkd~ 78 (129)
...+|.++| .++-.|+.| ||.. -.-+....+.+|-+|++++++.+.+.
T Consensus 73 ~V~~Ldd~~-~l~~~L~~l--------~~~h--~gv~~~~f~~~~~~ll~~l~~~lg~~ 120 (145)
T d2dn3b1 73 GLAHLDNLK-GTFATLSEL--------HCDK--LHVDPENFRLLGNVLVCVLAHHFGKE 120 (145)
T ss_dssp HHHTTTCHH-HHHHHHHHH--------HHTT--TCCCTHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHhccCHH-HHHHHHHHh--------cccc--cCCChhHHHHHHHHHHHHHHHHcCcc
Confidence 345666666 456666665 2332 24678899999999999999998754
No 2
>d1itha_ a.1.1.2 (A:) Hemoglobin {Innkeeper worm (Urechis caupo) [TaxId: 6431]}
Probab=21.10 E-value=43 Score=21.41 Aligned_cols=33 Identities=15% Similarity=-0.018 Sum_probs=27.1
Q ss_pred HhhCcHHHhhhCChHHHHHHHHHHHHHHHHHhh
Q 032996 44 KVIGHEELANKFDLKTLRALGFILMEHLKEKVK 76 (129)
Q Consensus 44 k~~Gh~~LA~kFDLk~LRAlGlVLmE~LKervk 76 (129)
+.+|..+.+..-+......+|-+|+++|++.+.
T Consensus 88 ~~lg~~H~~rgv~~~~F~~~~~~l~~~l~~~lg 120 (141)
T d1itha_ 88 KAKVPSHDAMGITPKHFGQLLKLVGGVFQEEFS 120 (141)
T ss_dssp HTTHHHHHTTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 345666666778899999999999999999874
No 3
>d1v4wb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Bluefin tuna (Thunnus thynnus) [TaxId: 8237]}
Probab=20.94 E-value=94 Score=19.42 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.0
Q ss_pred CChHHHHHHHHHHHHHHHHHhhhc
Q 032996 55 FDLKTLRALGFILMEHLKEKVKDL 78 (129)
Q Consensus 55 FDLk~LRAlGlVLmE~LKervkd~ 78 (129)
-+....+.+|-+|+++|++.+.+.
T Consensus 98 V~~~~f~~~~~~ll~~l~~~lg~~ 121 (146)
T d1v4wb_ 98 VDPDNFRILGDCLTVVIAANLGDA 121 (146)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHHHHHHHHcCcc
Confidence 577889999999999999998754
No 4
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.31 E-value=9.7 Score=24.42 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=20.8
Q ss_pred HHHHHHhhCcHHHhhhCChHHHHHH
Q 032996 39 ILQRAKVIGHEELANKFDLKTLRAL 63 (129)
Q Consensus 39 ~~~RAk~~Gh~~LA~kFDLk~LRAl 63 (129)
.|...|+.-.++||.+|+|++=-++
T Consensus 15 ~Ik~~Kvv~LedLAa~F~lktqd~i 39 (72)
T d1wi9a_ 15 YIKKSKVVLLEDLAFQMGLRTQDAI 39 (72)
T ss_dssp HHHHCSEECHHHHHHHHCSCHHHHH
T ss_pred HHHHCCEeeHHHHHHHcCCcHHHHH
Confidence 3678899999999999999985444
No 5
>d1gvha1 a.1.1.2 (A:1-146) Flavohemoglobin, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=18.61 E-value=1.1e+02 Score=19.13 Aligned_cols=47 Identities=11% Similarity=0.206 Sum_probs=33.4
Q ss_pred hccCcchhHHHHhHHHHHHHHHHhhCcHHHhhhCChHHHHHHHHHHHHHHHHHhhh
Q 032996 22 CSLSESEVDMLISLKLLILQRAKVIGHEELANKFDLKTLRALGFILMEHLKEKVKD 77 (129)
Q Consensus 22 csLSEsELDmLIsLK~L~~~RAk~~Gh~~LA~kFDLk~LRAlGlVLmE~LKervkd 77 (129)
.+|.+++ ++.-.|+.|.-.+++ . ........++|-+|++++++.+..
T Consensus 66 ~~Ldd~~-~l~~~l~~Lg~~H~~-~-------gv~~~~f~~~~~~ll~~l~~~lg~ 112 (146)
T d1gvha1 66 SNIENLP-ALLPAVEKIAQKHTS-F-------QIKPEQYNIVGEHLLATLDEMFSP 112 (146)
T ss_dssp TTGGGGG-GGHHHHHHHHHHHHH-T-------TCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred Hhccchh-hHHHHHHHHHHHHHh-C-------CCCHHHHHHHHHHHHHHHHHHcCC
Confidence 3455555 355567777666654 3 367788899999999999998853
No 6
>d1gcvb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Houndshark (Mustelus griseus) [TaxId: 89020]}
Probab=18.34 E-value=1.1e+02 Score=19.24 Aligned_cols=41 Identities=20% Similarity=0.085 Sum_probs=31.2
Q ss_pred HHHhHHHHHHHHHHhhCcHHHhhhCChHHHHHHHHHHHHHHHHHhhhc
Q 032996 31 MLISLKLLILQRAKVIGHEELANKFDLKTLRALGFILMEHLKEKVKDL 78 (129)
Q Consensus 31 mLIsLK~L~~~RAk~~Gh~~LA~kFDLk~LRAlGlVLmE~LKervkd~ 78 (129)
+--.|+.|.-.+|...| =+......+|=+|++.|++.+.+.
T Consensus 71 l~~~l~~L~~~H~~~~~-------V~p~~f~~~g~~ll~~L~~~lg~~ 111 (136)
T d1gcvb_ 71 VKTLFKDLSKKHADDLH-------VDPGSFHLLTDCIIVELAYLRKDC 111 (136)
T ss_dssp HHHHTHHHHHHHHHTTC-------CCGGGHHHHHHHHHHHHHHHHGGG
T ss_pred chhHHHHHHHHhHhhcC-------CCcHHHHHHHHHHHHHHHHhCccc
Confidence 33557777777665444 467888999999999999998764
No 7
>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=17.17 E-value=57 Score=21.68 Aligned_cols=48 Identities=19% Similarity=0.255 Sum_probs=30.8
Q ss_pred HHHHHHHHhhhcCCCCCcccchhcccccccccCCCCccccHHHHHhhhhccccceeeecc
Q 032996 67 LMEHLKEKVKDLSLFPGSAEPLAFVAGCNLLKCDNDDILTVEKLKTCLHIDLKRWCFINS 126 (129)
Q Consensus 67 LmE~LKervkd~Sl~p~v~~~lalld~CNLLk~~~~d~~~iEEl~t~i~~d~~r~~~~~~ 126 (129)
++-||+.++....+..+ +...||+.+.+|-+- -..-..+...|.|+-.
T Consensus 31 v~~YL~~Ki~g~~l~~~------~I~~~Dvy~~~Pw~L------p~~~~~~~~~wyFft~ 78 (166)
T d1ut7a_ 31 MVQYLCRKAAGYDFSLQ------LIAEIDLYKFDPWVL------PNKALFGEKEWYFFSP 78 (166)
T ss_dssp HHHTHHHHHTTCCCSSC------CSEECCGGGSCGGGH------HHHSSSCSSEEEEEEE
T ss_pred HHHHHHHHHcCCCCCcc------cceeccCCcCChhhc------cchhccCcceEEEEee
Confidence 34579999987655433 455678888888643 2223345667998753
No 8
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=17.02 E-value=7.9 Score=21.24 Aligned_cols=31 Identities=10% Similarity=0.015 Sum_probs=24.1
Q ss_pred hcccccccccCCCCccccHHHHHhhhhcccc
Q 032996 89 AFVAGCNLLKCDNDDILTVEKLKTCLHIDLK 119 (129)
Q Consensus 89 alld~CNLLk~~~~d~~~iEEl~t~i~~d~~ 119 (129)
++-..++.+..|..+.+++++|....|-..+
T Consensus 4 ~i~~v~~yI~~~~~~~~tl~~lA~~~~~s~~ 34 (54)
T d1bl0a1 4 TIHSILDWIEDNLESPLSLEKVSERSGYSKW 34 (54)
T ss_dssp HHHHHHHHHHTTTTSCCCCHHHHHHSSSCHH
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHCcCHH
Confidence 3445567788899999999999998887654
No 9
>d1wb9a1 a.113.1.1 (A:270-566) DNA repair protein MutS, domain III {Escherichia coli [TaxId: 562]}
Probab=16.96 E-value=32 Score=22.89 Aligned_cols=23 Identities=22% Similarity=0.262 Sum_probs=15.7
Q ss_pred hhhhhccCc--chhHHHHhHHHHHH
Q 032996 18 VSWLCSLSE--SEVDMLISLKLLIL 40 (129)
Q Consensus 18 ~~WlcsLSE--sELDmLIsLK~L~~ 40 (129)
...+..+++ +|||+|+||=.+|.
T Consensus 270 ~~~l~~~~~~iaeLD~l~S~A~~A~ 294 (297)
T d1wb9a1 270 LEALQQSASALAELDVLVNLAERAY 294 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444544 79999999877664
No 10
>d2bgxa2 d.118.1.1 (A:7-179) Probable N-acetylmuramoyl-L-alanine amidase YbjR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=16.89 E-value=29 Score=23.68 Aligned_cols=43 Identities=26% Similarity=0.451 Sum_probs=31.4
Q ss_pred ccCcchhHHHHhHHHHHHHHHH-----hhCcHHHhh--------hCChHHHHHHHH
Q 032996 23 SLSESEVDMLISLKLLILQRAK-----VIGHEELAN--------KFDLKTLRALGF 65 (129)
Q Consensus 23 sLSEsELDmLIsLK~L~~~RAk-----~~Gh~~LA~--------kFDLk~LRAlGl 65 (129)
..++.+++.|+.|-.-++.|-. +.||.++|- .||-+.|+.-|+
T Consensus 115 ~~t~aQ~~~l~~L~~~l~~~y~I~~~~IvgH~diap~RK~DPG~~FpW~~l~~~~~ 170 (173)
T d2bgxa2 115 PFEPAQIQALIPLAKDIIARYHIKPENVVAHADIAPQRKDDPGPLFPWQQLAQQGI 170 (173)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTCCGGGEEEHHHHSTTTCCTTCTTSCHHHHHHTTC
T ss_pred CchHHHHHHHHHHHHHHHHHcCCChHHEeeecccCCCCCCCCCCCCCHHHHHHcCC
Confidence 3688899999998777766654 689999962 466666766543
Done!