BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032997
(129 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ND0|A Chain A, X-Ray Crystal Structure Of A Slow Cyanobacterial Cl-H+
ANTIPORTER
pdb|3ND0|B Chain B, X-Ray Crystal Structure Of A Slow Cyanobacterial Cl-H+
ANTIPORTER
pdb|3Q17|A Chain A, Structure Of A Slow Clc Cl-H+ ANTIPORTER FROM A
CYANOBACTERIUM IN Bromide
pdb|3Q17|B Chain B, Structure Of A Slow Clc Cl-H+ ANTIPORTER FROM A
CYANOBACTERIUM IN Bromide
Length = 466
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 38 SSITGVSVVVGYLSGIIPLHLHYLSHRVWIFNFINIDAGIKPGLKGPSMVTGGLIGLM-G 96
+S +G+ + G+L G +PL + + F+++ AG+ G +GP++ GG IG M G
Sbjct: 100 TSGSGIPQIEGHLEGKLPLVWQRVLPIKLVGGFLSLGAGMLAGFEGPTIQMGGSIGQMTG 159
Query: 97 GFMYAYQNS 105
G+ A Q +
Sbjct: 160 GWFKATQEN 168
>pdb|3Q1T|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From
Mycobacterium Avium
pdb|3Q1T|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase From
Mycobacterium Avium
pdb|3Q1T|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase From
Mycobacterium Avium
pdb|3Q1T|D Chain D, Crystal Structure Of Enoyl-Coa Hydratase From
Mycobacterium Avium
pdb|3Q1T|E Chain E, Crystal Structure Of Enoyl-Coa Hydratase From
Mycobacterium Avium
pdb|3Q1T|F Chain F, Crystal Structure Of Enoyl-Coa Hydratase From
Mycobacterium Avium
Length = 278
Score = 32.7 bits (73), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Query: 13 YPVIDRNPPFTAVVGNFNTLDYLRFSSITGVSVVVGYLSGIIPLHLHYLSHRVWIFNFIN 72
+PVIDR+P AV+ + S + +G G I + R + N IN
Sbjct: 55 WPVIDRDPAVRAVLVRGEGKAFSSGGSFDLIDETIGDYQGRIRI---MREARDLVHNMIN 111
Query: 73 IDAGIKPGLKGPSMVTGGLIGLMGGFMYAYQNS 105
D + ++GP++ G ++ L+ A + +
Sbjct: 112 CDTPVVSAIRGPAVGAGLVVALLADISVAGRTA 144
>pdb|3QK8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
pdb|3QK8|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
pdb|3QK8|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
pdb|3QK8|D Chain D, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
pdb|3QK8|E Chain E, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
pdb|3QK8|F Chain F, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
Length = 272
Score = 32.0 bits (71), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 13 YPVIDRNPPFTAVVGNFNTLDYLRFSSITGVSVVVGYLSGIIPLHLHYLSHRVWIFNFIN 72
+PVIDR+P V+ + S + +G G I + R + N +N
Sbjct: 49 WPVIDRDPDVRVVLVRGEGKAFSSGGSFELIDETIGDYEGRIRI---MREARDLVLNLVN 105
Query: 73 IDAGIKPGLKGPSMVTGGLIGLMGGFMYA 101
+D + ++GP++ G ++ L+ A
Sbjct: 106 LDKPVVSAIRGPAVGAGLVVALLADISVA 134
>pdb|1Q9I|A Chain A, The A251c:s430c Double Mutant Of Flavocytochrome C3 From
Shewanella Frigidimarina
Length = 571
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 71 INIDAGIKPGLKGPSMVTGGLIGL--MGGFMYAYQNSAGRLMGFFPNEGEVARYQKR 125
+N + PGL G VTGG+ G +GG + + GRL G E A+Y K+
Sbjct: 519 MNAKKQVIPGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAG-----EEAAKYSKK 570
>pdb|1JRY|A Chain A, Crystal Structure Of Arg402lys Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRY|B Chain B, Crystal Structure Of Arg402lys Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 71 INIDAGIKPGLKGPSMVTGGLIGL--MGGFMYAYQNSAGRLMGFFPNEGEVARYQKR 125
+N + PGL G VTGG+ G +GG + + GRL G E A+Y K+
Sbjct: 519 MNAKKQVIPGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAG-----EEAAKYSKK 570
>pdb|2B7S|A Chain A, R381k Mutant Of Flavocytochrome C3
Length = 571
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 71 INIDAGIKPGLKGPSMVTGGLIGL--MGGFMYAYQNSAGRLMGFFPNEGEVARYQKR 125
+N + PGL G VTGG+ G +GG + + GRL G E A+Y K+
Sbjct: 519 MNAKKQVIPGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAG-----EEAAKYSKK 570
>pdb|1P2E|A Chain A, H61a Mutant Of Flavocytochrome C3
Length = 571
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 71 INIDAGIKPGLKGPSMVTGGLIGL--MGGFMYAYQNSAGRLMGFFPNEGEVARYQKR 125
+N + PGL G VTGG+ G +GG + + GRL G E A+Y K+
Sbjct: 519 MNAKKQVIPGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAG-----EEAAKYSKK 570
>pdb|1KSS|A Chain A, Crystal Structure Of His505ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 71 INIDAGIKPGLKGPSMVTGGLIGL--MGGFMYAYQNSAGRLMGFFPNEGEVARYQKR 125
+N + PGL G VTGG+ G +GG + + GRL G E A+Y K+
Sbjct: 519 MNAKKQVIPGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAG-----EEAAKYSKK 570
>pdb|1QJD|A Chain A, Flavocytochrome C3 From Shewanella Frigidimarina
pdb|1Y0P|A Chain A, Flavocytochrome C3 With Mesaconate Bound
Length = 571
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 71 INIDAGIKPGLKGPSMVTGGLIGL--MGGFMYAYQNSAGRLMGFFPNEGEVARYQKR 125
+N + PGL G VTGG+ G +GG + + GRL G E A+Y K+
Sbjct: 519 MNAKKQVIPGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAG-----EEAAKYSKK 570
>pdb|1KSU|A Chain A, Crystal Structure Of His505tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1KSU|B Chain B, Crystal Structure Of His505tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 71 INIDAGIKPGLKGPSMVTGGLIGL--MGGFMYAYQNSAGRLMGFFPNEGEVARYQKR 125
+N + PGL G VTGG+ G +GG + + GRL G E A+Y K+
Sbjct: 519 MNAKKQVIPGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAG-----EEAAKYSKK 570
>pdb|1E39|A Chain A, Flavocytochrome C3 From Shewanella Frigidimarina Histidine
365 Mutated To Alanine
Length = 571
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 71 INIDAGIKPGLKGPSMVTGGLIGL--MGGFMYAYQNSAGRLMGFFPNEGEVARYQKR 125
+N + PGL G VTGG+ G +GG + + GRL G E A+Y K+
Sbjct: 519 MNAKKQVIPGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAG-----EEAAKYSKK 570
>pdb|1P2H|A Chain A, H61m Mutant Of Flavocytochrome C3
Length = 571
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 71 INIDAGIKPGLKGPSMVTGGLIGL--MGGFMYAYQNSAGRLMGFFPNEGEVARYQKR 125
+N + PGL G VTGG+ G +GG + + GRL G E A+Y K+
Sbjct: 519 MNAKKQVIPGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAG-----EEAAKYSKK 570
>pdb|1JRX|A Chain A, Crystal Structure Of Arg402ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRX|B Chain B, Crystal Structure Of Arg402ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 71 INIDAGIKPGLKGPSMVTGGLIGL--MGGFMYAYQNSAGRLMGFFPNEGEVARYQKR 125
+N + PGL G VTGG+ G +GG + + GRL G E A+Y K+
Sbjct: 519 MNAKKQVIPGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAG-----EEAAKYSKK 570
>pdb|1M64|A Chain A, Crystal Structure Of Q363f Mutant Flavocytochrome C3
pdb|1M64|B Chain B, Crystal Structure Of Q363f Mutant Flavocytochrome C3
Length = 571
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 71 INIDAGIKPGLKGPSMVTGGLIGL--MGGFMYAYQNSAGRLMGFFPNEGEVARYQKR 125
+N + PGL G VTGG+ G +GG + + GRL G E A+Y K+
Sbjct: 519 MNAKKQVIPGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAG-----EEAAKYSKK 570
>pdb|1JRZ|A Chain A, Crystal Structure Of Arg402tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRZ|B Chain B, Crystal Structure Of Arg402tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 71 INIDAGIKPGLKGPSMVTGGLIGL--MGGFMYAYQNSAGRLMGFFPNEGEVARYQKR 125
+N + PGL G VTGG+ G +GG + + GRL G E A+Y K+
Sbjct: 519 MNAKKQVIPGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAG-----EEAAKYSKK 570
>pdb|2B7R|A Chain A, Structure Of E378d Mutant Flavocytochrome C3
Length = 571
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 71 INIDAGIKPGLKGPSMVTGGLIGL--MGGFMYAYQNSAGRLMGFFPNEGEVARYQKR 125
+N + PGL G VTGG+ G +GG + + GRL G E A+Y K+
Sbjct: 519 MNAKKQVIPGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAG-----EEAAKYSKK 570
>pdb|1LJ1|A Chain A, Crystal Structure Of Q363fR402A MUTANT FLAVOCYTOCHROME C3
pdb|1LJ1|B Chain B, Crystal Structure Of Q363fR402A MUTANT FLAVOCYTOCHROME C3
Length = 571
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 71 INIDAGIKPGLKGPSMVTGGLIGL--MGGFMYAYQNSAGRLMGFFPNEGEVARYQKR 125
+N + PGL G VTGG+ G +GG + + GRL G E A+Y K+
Sbjct: 519 MNAKKQVIPGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAG-----EEAAKYSKK 570
>pdb|3PV2|A Chain A, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|B Chain B, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|C Chain C, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|D Chain D, Structure Of Legionella Fallonii Degq (Wt)
Length = 451
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 67 IFNFINIDAGIKPGLKGPSMVT--GGLIGLMGGFMYAYQNSAG 107
+ NFI DA I PG G ++V G LIG+ + Y + G
Sbjct: 190 VENFIQTDAAINPGNSGGALVNAKGELIGINTAILSPYGGNVG 232
>pdb|3PV4|A Chain A, Structure Of Legionella Fallonii Degq (Delta-Pdz2 Variant)
Length = 354
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 67 IFNFINIDAGIKPGLKGPSMVT--GGLIGLMGGFMYAYQNSAG 107
+ NFI DA I PG G ++V G LIG+ + Y + G
Sbjct: 190 VENFIQTDAAINPGNSGGALVNAKGELIGINTAILSPYGGNVG 232
>pdb|3PV3|A Chain A, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|B Chain B, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|C Chain C, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|D Chain D, Structure Of Legionella Fallonii Degq (S193a Variant)
Length = 451
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 67 IFNFINIDAGIKPGLKGPSMVT--GGLIGLMGGFMYAYQNSAG 107
+ NFI DA I PG G ++V G LIG+ + Y + G
Sbjct: 190 VENFIQTDAAINPGNAGGALVNAKGELIGINTAILSPYGGNVG 232
>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
Complex With Ca2+ And Amppnp
Length = 494
Score = 25.4 bits (54), Expect = 8.2, Method: Composition-based stats.
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 35 LRFSSITGVSVVVGYLSGIIPLHLHYLSHR 64
++F+ + ++ LSG+ LH H + HR
Sbjct: 131 MKFNEVDAAVIIKQVLSGVTYLHKHNIVHR 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.143 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,293,091
Number of Sequences: 62578
Number of extensions: 176480
Number of successful extensions: 332
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 328
Number of HSP's gapped (non-prelim): 25
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)