BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032997
         (129 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q02854|NUXM_NEUCR NADH-ubiquinone oxidoreductase 21 kDa subunit OS=Neurospora crassa
           (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
           / FGSC 987) GN=nuo-21 PE=1 SV=1
          Length = 189

 Score = 37.7 bits (86), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 18/115 (15%)

Query: 5   ITASEKPQYPVIDRNPPFTAVVGNFNTLDYLRFSSITGVSVVVGYLSGIIPLHLHYLSHR 64
           I+ +    YP+ID +P F  V+G     DY           V G ++G     L YL  +
Sbjct: 11  ISKTLNTNYPLIDNDPHFRRVIGYARPSDY-----------VHGTVAGAAGPGLLYLMEK 59

Query: 65  VWIFNFINIDAGIKPGLKGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEV 119
           +         +G+  G    +M     +G  GGF+Y YQ S  R  G   N  EV
Sbjct: 60  M-------APSGVGKGGFPKAMRLATAVGFFGGFLYFYQRSILRFYGMSENAREV 107


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.143    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,496,080
Number of Sequences: 539616
Number of extensions: 2232354
Number of successful extensions: 4222
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4210
Number of HSP's gapped (non-prelim): 14
length of query: 129
length of database: 191,569,459
effective HSP length: 95
effective length of query: 34
effective length of database: 140,305,939
effective search space: 4770401926
effective search space used: 4770401926
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)