Query 032997
Match_columns 129
No_of_seqs 100 out of 102
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 08:31:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032997.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032997hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02975 complex I subunit 100.0 7.7E-50 1.7E-54 288.7 8.7 97 4-124 1-97 (97)
2 PF10785 NADH-u_ox-rdase: NADH 100.0 3.3E-38 7.2E-43 222.3 8.1 85 10-114 1-86 (86)
3 PRK01844 hypothetical protein; 59.7 12 0.00025 26.2 2.9 17 86-102 10-26 (72)
4 PF13807 GNVR: G-rich domain o 59.1 12 0.00026 25.2 2.9 24 82-105 58-81 (82)
5 PRK15471 chain length determin 58.3 12 0.00026 32.0 3.4 38 69-107 280-319 (325)
6 PF14143 YrhC: YrhC-like prote 57.1 35 0.00077 23.7 5.0 26 32-57 8-33 (72)
7 PRK00523 hypothetical protein; 56.2 15 0.00032 25.8 2.9 17 86-102 11-27 (72)
8 PF03672 UPF0154: Uncharacteri 48.8 19 0.00042 24.5 2.6 17 86-102 3-19 (64)
9 PF08514 STAG: STAG domain ; 48.5 8.2 0.00018 28.3 0.8 22 9-30 2-23 (118)
10 COG3765 WzzB Chain length dete 46.2 24 0.00052 31.1 3.4 35 73-108 306-342 (347)
11 PF12597 DUF3767: Protein of u 43.2 51 0.0011 24.4 4.3 24 14-37 11-34 (118)
12 PF11821 DUF3341: Protein of u 42.9 27 0.00058 27.6 2.9 29 77-105 47-75 (173)
13 TIGR02327 int_mem_ywzB conserv 42.4 23 0.0005 24.2 2.2 40 70-109 20-64 (68)
14 PF15050 SCIMP: SCIMP protein 41.9 43 0.00093 25.9 3.8 51 58-124 1-60 (133)
15 COG3763 Uncharacterized protei 39.4 33 0.00071 24.0 2.6 17 86-102 10-26 (71)
16 PF06699 PIG-F: GPI biosynthes 35.1 1.2E+02 0.0025 24.2 5.5 64 22-100 121-186 (190)
17 PRK10381 LPS O-antigen length 34.9 46 0.001 28.9 3.4 27 82-108 338-364 (377)
18 PF12112 DUF3579: Protein of u 33.8 16 0.00035 26.5 0.4 14 27-40 18-31 (92)
19 PF04971 Lysis_S: Lysis protei 32.4 45 0.00097 23.1 2.4 31 22-52 21-52 (68)
20 PF02060 ISK_Channel: Slow vol 29.5 52 0.0011 25.4 2.5 23 86-108 48-71 (129)
21 PF11239 DUF3040: Protein of u 27.2 83 0.0018 21.3 3.0 15 15-29 18-32 (82)
22 KOG2715 Uncharacterized conser 26.6 20 0.00044 29.4 -0.2 23 14-36 67-90 (210)
23 PF15353 HECA: Headcase protei 25.9 43 0.00093 25.1 1.4 29 100-128 57-85 (107)
24 COG5336 Uncharacterized protei 25.8 1.8E+02 0.004 22.0 4.8 17 85-101 76-92 (116)
25 PF04341 DUF485: Protein of un 25.7 2.2E+02 0.0047 19.7 5.0 42 16-57 1-42 (91)
26 PF11981 DUF3482: Domain of un 25.5 1.1E+02 0.0023 26.0 4.0 23 82-104 167-190 (292)
27 COG3162 Predicted membrane pro 25.2 2.1E+02 0.0045 21.3 5.0 24 10-33 3-26 (102)
28 COG4425 Predicted membrane pro 24.9 1.9E+02 0.0042 27.1 5.7 72 35-114 75-149 (588)
29 PF04147 Nop14: Nop14-like fam 24.7 74 0.0016 30.6 3.1 17 94-110 590-606 (840)
30 PF09527 ATPase_gene1: Putativ 23.9 1.9E+02 0.0041 17.9 5.0 22 83-104 32-53 (55)
31 PF11742 DUF3302: Protein of u 22.2 2.9E+02 0.0063 19.5 5.5 32 82-113 38-76 (78)
32 PF07051 OCIA: Ovarian carcino 22.1 1.5E+02 0.0032 22.3 3.7 28 79-107 71-98 (111)
33 PF15061 DUF4538: Domain of un 21.8 1.1E+02 0.0024 20.6 2.7 42 82-126 5-46 (58)
34 PF11744 ALMT: Aluminium activ 21.3 46 0.001 29.5 1.0 27 69-95 52-79 (406)
No 1
>PLN02975 complex I subunit
Probab=100.00 E-value=7.7e-50 Score=288.69 Aligned_cols=97 Identities=88% Similarity=1.471 Sum_probs=93.6
Q ss_pred ccCCCCCCCCCcccCCCCchhhhcccChhHHHHHHHhhhhhhHHHHHhcccchhhhhhhhhhhhhhhcccccCCCCCCCC
Q 032997 4 DITASEKPQYPVIDRNPPFTAVVGNFNTLDYLRFSSITGVSVVVGYLSGIIPLHLHYLSHRVWIFNFINIDAGIKPGLKG 83 (129)
Q Consensus 4 ~i~~~~~p~YPvID~dP~f~rVv~yfR~SDY~~~a~~ta~~~~~~y~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (129)
||+..++|+|||||+||||+|||+|||+|||++|+++|+++|+++|+.+ ++|++++
T Consensus 1 ~~~~~~~P~YPlId~dP~f~rVv~yfr~sDY~~~a~~ta~s~~~~~~~~------------------------~~~~~~~ 56 (97)
T PLN02975 1 DITASDKPEYPVVDRNPTFTKVVGNFSALDYLRFATITGVSVTVGYLSG------------------------IKPGIRG 56 (97)
T ss_pred CCcccCCCCCCccCCCCChHHHHHhCCHHHHHHHHHHHHHHHHHHHHHc------------------------cCccccc
Confidence 6899999999999999999999999999999999999999999999977 6788899
Q ss_pred chHHHHHHHHHHHHHHHHHhhccccccCcCCCHHHHHHhhh
Q 032997 84 PSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYQK 124 (129)
Q Consensus 84 ~amr~ag~iG~~GGfl~aYqrS~~Rf~G~~EN~rEv~ry~~ 124 (129)
++||++|+||++||||+||||||+|||||+||+||||||+|
T Consensus 57 ~~mr~ag~iG~~gGf~~aYq~S~~Rf~G~~EN~rEV~~~~~ 97 (97)
T PLN02975 57 PSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYQK 97 (97)
T ss_pred hHHHHHHHHHHhhhHHhhhcccchhhcCCCCCHHHHHhccC
Confidence 99999999999999999999999999999999999999986
No 2
>PF10785 NADH-u_ox-rdase: NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit; InterPro: IPR019721 This domain is found in the N-terminal region of NADH-ubiquinone oxidoreductase 21kDa subunits from plants and fungi [].
Probab=100.00 E-value=3.3e-38 Score=222.32 Aligned_cols=85 Identities=44% Similarity=0.758 Sum_probs=77.4
Q ss_pred CCCCCcccCCCCchhhhcccChhHHHHHHHhhhhhhHHHHH-hcccchhhhhhhhhhhhhhhcccccCCCCCCCCchHHH
Q 032997 10 KPQYPVIDRNPPFTAVVGNFNTLDYLRFSSITGVSVVVGYL-SGIIPLHLHYLSHRVWIFNFINIDAGIKPGLKGPSMVT 88 (129)
Q Consensus 10 ~p~YPvID~dP~f~rVv~yfR~SDY~~~a~~ta~~~~~~y~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~amr~ 88 (129)
+|+|||||+||||+||++|||+|||++|+++|+++|+++|+ +...|++ +++++ +++|++
T Consensus 1 ~~~YPvId~dP~f~rVv~~~R~sDy~~~a~~ta~~p~~~~~~~~~~~~~-------------------~~~~~-~~~~~~ 60 (86)
T PF10785_consen 1 KPPYPVIDSDPHFKRVVRYFRPSDYAIWAGATAASPPLGYYMERSAPSR-------------------VGRGG-GPAMRL 60 (86)
T ss_pred CCCCCccCCCCCHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcccccc-------------------ccccc-chHHHH
Confidence 58999999999999999999999999999999999999877 5555555 44444 899999
Q ss_pred HHHHHHHHHHHHHHhhccccccCcCC
Q 032997 89 GGLIGLMGGFMYAYQNSAGRLMGFFP 114 (129)
Q Consensus 89 ag~iG~~GGfl~aYqrS~~Rf~G~~E 114 (129)
+++||++||||+|||||++||+||+|
T Consensus 61 a~~ig~~gGfl~ayqrS~~Rf~G~~e 86 (86)
T PF10785_consen 61 AGAIGFFGGFLLAYQRSSLRFMGFTE 86 (86)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCC
Confidence 99999999999999999999999998
No 3
>PRK01844 hypothetical protein; Provisional
Probab=59.74 E-value=12 Score=26.23 Aligned_cols=17 Identities=29% Similarity=0.303 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032997 86 MVTGGLIGLMGGFMYAY 102 (129)
Q Consensus 86 mr~ag~iG~~GGfl~aY 102 (129)
..++.++|+++||++|-
T Consensus 10 ~I~~li~G~~~Gff~ar 26 (72)
T PRK01844 10 GVVALVAGVALGFFIAR 26 (72)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45678899999999873
No 4
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=59.07 E-value=12 Score=25.17 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=18.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhc
Q 032997 82 KGPSMVTGGLIGLMGGFMYAYQNS 105 (129)
Q Consensus 82 ~~~amr~ag~iG~~GGfl~aYqrS 105 (129)
+...+.+++++|++.|..+++-|.
T Consensus 58 ~~lil~l~~~~Gl~lgi~~~~~re 81 (82)
T PF13807_consen 58 RALILALGLFLGLILGIGLAFLRE 81 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344467778899999999988764
No 5
>PRK15471 chain length determinant protein WzzB; Provisional
Probab=58.32 E-value=12 Score=32.03 Aligned_cols=38 Identities=18% Similarity=0.063 Sum_probs=25.7
Q ss_pred hhcccccCCCCCC--CCchHHHHHHHHHHHHHHHHHhhccc
Q 032997 69 NFINIDAGIKPGL--KGPSMVTGGLIGLMGGFMYAYQNSAG 107 (129)
Q Consensus 69 ~~~~~~~~~~~~~--~~~amr~ag~iG~~GGfl~aYqrS~~ 107 (129)
.++...| ++|.+ +.-.+.+++++|++.|..++..|...
T Consensus 280 l~~p~~P-v~~d~Pkr~lIlil~~~lG~~lg~~~vL~r~~~ 319 (325)
T PRK15471 280 VMKPTLP-VRRDSPKKAITLVLAVLLGGMIGAGIVLGRNAL 319 (325)
T ss_pred ecCCCCC-CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445 33333 45568899999999999998876544
No 6
>PF14143 YrhC: YrhC-like protein
Probab=57.09 E-value=35 Score=23.67 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=19.7
Q ss_pred hHHHHHHHhhhhhhHHHHHhcccchh
Q 032997 32 LDYLRFSSITGVSVVVGYLSGIIPLH 57 (129)
Q Consensus 32 SDY~~~a~~ta~~~~~~y~~~~~p~~ 57 (129)
.||=+.+.+-.+.-++.|+..+.|..
T Consensus 8 ~DyKrf~~vLLAvs~FlYiG~viP~~ 33 (72)
T PF14143_consen 8 EDYKRFAFVLLAVSTFLYIGTVIPIG 33 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 68888887766666678888888855
No 7
>PRK00523 hypothetical protein; Provisional
Probab=56.20 E-value=15 Score=25.75 Aligned_cols=17 Identities=12% Similarity=0.163 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032997 86 MVTGGLIGLMGGFMYAY 102 (129)
Q Consensus 86 mr~ag~iG~~GGfl~aY 102 (129)
..++.++|+++||++|-
T Consensus 11 ~i~~li~G~~~Gffiar 27 (72)
T PRK00523 11 GIPLLIVGGIIGYFVSK 27 (72)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45668889999999863
No 8
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=48.77 E-value=19 Score=24.53 Aligned_cols=17 Identities=24% Similarity=0.469 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032997 86 MVTGGLIGLMGGFMYAY 102 (129)
Q Consensus 86 mr~ag~iG~~GGfl~aY 102 (129)
..++-++|+++||++|-
T Consensus 3 iilali~G~~~Gff~ar 19 (64)
T PF03672_consen 3 IILALIVGAVIGFFIAR 19 (64)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45678889999999873
No 9
>PF08514 STAG: STAG domain ; InterPro: IPR013721 STAG domain proteins are subunits of cohesin complex - a protein complex required for sister chromatid cohesion in eukaryotes. The STAG domain is present in Schizosaccharomyces pombe (Fission yeast) mitotic cohesin Psc3, and the meiosis specific cohesin Rec11. Many organisms express a meiosis-specific STAG protein, for example, mice and humans have a meiosis specific variant called STAG3, although budding yeast does not have a meiosis specific version [].
Probab=48.54 E-value=8.2 Score=28.30 Aligned_cols=22 Identities=27% Similarity=0.613 Sum_probs=17.9
Q ss_pred CCCCCCcccCCCCchhhhcccC
Q 032997 9 EKPQYPVIDRNPPFTAVVGNFN 30 (129)
Q Consensus 9 ~~p~YPvID~dP~f~rVv~yfR 30 (129)
+.++||+|.+.|+++....||.
T Consensus 2 ~~~~YPli~k~~~~k~Fr~~~~ 23 (118)
T PF08514_consen 2 DSSDYPLISKGKKFKKFRKNFC 23 (118)
T ss_pred CcccCCCcCCCcccHHHHHHHH
Confidence 3578999999999888777653
No 10
>COG3765 WzzB Chain length determinant protein [Cell envelope biogenesis, outer membrane]
Probab=46.22 E-value=24 Score=31.10 Aligned_cols=35 Identities=23% Similarity=0.189 Sum_probs=24.2
Q ss_pred cccCCCCCCCCch--HHHHHHHHHHHHHHHHHhhcccc
Q 032997 73 IDAGIKPGLKGPS--MVTGGLIGLMGGFMYAYQNSAGR 108 (129)
Q Consensus 73 ~~~~~~~~~~~~a--mr~ag~iG~~GGfl~aYqrS~~R 108 (129)
..| ++|-.++.+ +.++++||.+.|+.++.-|.+.|
T Consensus 306 ~~P-vkrd~PrrA~ilil~~LiGgm~g~g~vL~R~~lk 342 (347)
T COG3765 306 TLP-VKRDSPRRAIILILGALIGGMLGAGVVLLRNALK 342 (347)
T ss_pred CCC-CcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 444444444 67889999998888888777655
No 11
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=43.18 E-value=51 Score=24.44 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=20.1
Q ss_pred CcccCCCCchhhhcccChhHHHHH
Q 032997 14 PVIDRNPPFTAVVGNFNTLDYLRF 37 (129)
Q Consensus 14 PvID~dP~f~rVv~yfR~SDY~~~ 37 (129)
+--...|++++.+.-++.+|+..+
T Consensus 11 ~~~~~~~t~~~A~ksi~~~df~~~ 34 (118)
T PF12597_consen 11 GPPQERPTLSDAVKSIKLSDFRNV 34 (118)
T ss_pred CCCCCCCcHHHHHHhcCHHHHhHH
Confidence 555677999999999999999654
No 12
>PF11821 DUF3341: Protein of unknown function (DUF3341); InterPro: IPR021776 This family of proteins are functionally uncharacterised. This family is found in bacteria. Proteins in this family are about 170 amino acids in length.
Probab=42.88 E-value=27 Score=27.60 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=23.3
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHhhc
Q 032997 77 IKPGLKGPSMVTGGLIGLMGGFMYAYQNS 105 (129)
Q Consensus 77 ~~~~~~~~amr~ag~iG~~GGfl~aYqrS 105 (129)
.+|+..+.....+|++|+++||++.|--+
T Consensus 47 ~~~s~l~~~~l~~Gl~G~~~~~~l~~~t~ 75 (173)
T PF11821_consen 47 LKRSRLPWIALVGGLTGFATAFLLQWYTN 75 (173)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777888999999999999887544
No 13
>TIGR02327 int_mem_ywzB conserved hypothetical integral membrane protein. Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the Firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes ywzB from Bacillus subtilis; Pfam model pfam06612 describes the same family as Protein of unknown function DUF1146.
Probab=42.41 E-value=23 Score=24.20 Aligned_cols=40 Identities=20% Similarity=0.256 Sum_probs=26.4
Q ss_pred hcccccCCCCCCCCch----HHHHHHHH-HHHHHHHHHhhccccc
Q 032997 70 FINIDAGIKPGLKGPS----MVTGGLIG-LMGGFMYAYQNSAGRL 109 (129)
Q Consensus 70 ~~~~~~~~~~~~~~~a----mr~ag~iG-~~GGfl~aYqrS~~Rf 109 (129)
..+.+++.+++..+.+ +.+|-++| +++.|++.|-+.++.+
T Consensus 20 ~i~~ekf~k~~~~~q~~ll~vllaIalGylvs~FfL~~i~~s~~L 64 (68)
T TIGR02327 20 VIDWEKFIKPQNVGQLRVLVVLIAIALGYTVSHFFLELIQLSQSL 64 (68)
T ss_pred HhhHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445555444433 56788888 8899999998877654
No 14
>PF15050 SCIMP: SCIMP protein
Probab=41.87 E-value=43 Score=25.90 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=29.2
Q ss_pred hhhhhhhhhhhhhcccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhccccccC--------cCCCH-HHHHHhhh
Q 032997 58 LHYLSHRVWIFNFINIDAGIKPGLKGPSMVTGGLIGLMGGFMYAYQNSAGRLMG--------FFPNE-GEVARYQK 124 (129)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~amr~ag~iG~~GGfl~aYqrS~~Rf~G--------~~EN~-rEv~ry~~ 124 (129)
|+-|.+.|||.+- +.--++++.=|+++.+.-..++=.| +++|. .|.+|||.
T Consensus 1 M~WWr~nFWiiLA----------------VaII~vS~~lglIlyCvcR~~lRqGkkweiakp~k~~~rdeEkmYEN 60 (133)
T PF15050_consen 1 MSWWRDNFWIILA----------------VAIILVSVVLGLILYCVCRWQLRQGKKWEIAKPLKQKQRDEEKMYEN 60 (133)
T ss_pred CchHHhchHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHccccceeccchhhhcccHHHHHHH
Confidence 3567888888871 1123344555666665544444445 34554 56669985
No 15
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.38 E-value=33 Score=24.00 Aligned_cols=17 Identities=47% Similarity=0.759 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032997 86 MVTGGLIGLMGGFMYAY 102 (129)
Q Consensus 86 mr~ag~iG~~GGfl~aY 102 (129)
+.++-++|++|||+++-
T Consensus 10 ivl~ll~G~~~G~fiar 26 (71)
T COG3763 10 IVLALLAGLIGGFFIAR 26 (71)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56778889999999873
No 16
>PF06699 PIG-F: GPI biosynthesis protein family Pig-F; InterPro: IPR009580 Glycosylphosphatidylinositol anchor biosynthesis protein Pig-F is involved in glycosylphosphatidylinositol (GPI) anchor biosynthesis [, , ]. ; GO: 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=35.09 E-value=1.2e+02 Score=24.25 Aligned_cols=64 Identities=19% Similarity=0.273 Sum_probs=43.4
Q ss_pred chhhhcccChhH--HHHHHHhhhhhhHHHHHhcccchhhhhhhhhhhhhhhcccccCCCCCCCCchHHHHHHHHHHHHHH
Q 032997 22 FTAVVGNFNTLD--YLRFSSITGVSVVVGYLSGIIPLHLHYLSHRVWIFNFINIDAGIKPGLKGPSMVTGGLIGLMGGFM 99 (129)
Q Consensus 22 f~rVv~yfR~SD--Y~~~a~~ta~~~~~~y~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~amr~ag~iG~~GGfl 99 (129)
++|++...++.| +......++.+..+|...|..|.-|+ |.|- -| ...-...+++.+|.+-|.+
T Consensus 121 w~~~~~~~~~~~~~~~~~~~~~~~g~~~GaWlGa~pIPLD-WDRp--------WQ------~WPi~~~~Ga~~G~~~G~~ 185 (190)
T PF06699_consen 121 WKRVFSLERPLDEIFENSLLYPAIGAVLGAWLGAVPIPLD-WDRP--------WQ------AWPITCVVGAYLGYFVGSL 185 (190)
T ss_pred HHHHHhcCCccchHHHHHHHHHHHHHHHHHHHcceeccCC-CCCc--------cc------cCChHHHHHHHHHHHHHHH
Confidence 778887777766 44445567777777888888998887 7651 11 2556677777777665555
Q ss_pred H
Q 032997 100 Y 100 (129)
Q Consensus 100 ~ 100 (129)
+
T Consensus 186 ~ 186 (190)
T PF06699_consen 186 I 186 (190)
T ss_pred h
Confidence 4
No 17
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=34.91 E-value=46 Score=28.90 Aligned_cols=27 Identities=26% Similarity=0.219 Sum_probs=21.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhcccc
Q 032997 82 KGPSMVTGGLIGLMGGFMYAYQNSAGR 108 (129)
Q Consensus 82 ~~~amr~ag~iG~~GGfl~aYqrS~~R 108 (129)
+.-.|.+++++|++.|-.++.-|-..|
T Consensus 338 r~lIlvl~~llG~~lg~~~vL~r~~~r 364 (377)
T PRK10381 338 KALIVILAALIGGMLACGFVLLRHAMR 364 (377)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445589999999999988887766654
No 18
>PF12112 DUF3579: Protein of unknown function (DUF3579); InterPro: IPR021969 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 98 to 126 amino acids in length. This protein has a conserved FRP sequence motif. ; PDB: 2L9D_A.
Probab=33.80 E-value=16 Score=26.53 Aligned_cols=14 Identities=14% Similarity=0.074 Sum_probs=8.0
Q ss_pred cccChhHHHHHHHh
Q 032997 27 GNFNTLDYLRFSSI 40 (129)
Q Consensus 27 ~yfR~SDY~~~a~~ 40 (129)
+=||||||+-=...
T Consensus 18 k~FRPSDWaERL~g 31 (92)
T PF12112_consen 18 KTFRPSDWAERLCG 31 (92)
T ss_dssp -B-S-TTHHHHHHH
T ss_pred CCcCCccHHHHHHH
Confidence 34999999975543
No 19
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=32.44 E-value=45 Score=23.10 Aligned_cols=31 Identities=16% Similarity=0.382 Sum_probs=24.1
Q ss_pred chhhhcccChhHHHHHHHhhhhhhHH-HHHhc
Q 032997 22 FTAVVGNFNTLDYLRFSSITGVSVVV-GYLSG 52 (129)
Q Consensus 22 f~rVv~yfR~SDY~~~a~~ta~~~~~-~y~~~ 52 (129)
+.+++.-|.|+++..++.+.++..++ .|+..
T Consensus 21 l~~lld~~sp~qW~aIGvi~gi~~~~lt~ltN 52 (68)
T PF04971_consen 21 LLQLLDQFSPSQWAAIGVIGGIFFGLLTYLTN 52 (68)
T ss_pred HHHHHhccCcccchhHHHHHHHHHHHHHHHhH
Confidence 46788999999999988888777665 45554
No 20
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=29.46 E-value=52 Score=25.38 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=16.8
Q ss_pred HHHHHHHH-HHHHHHHHHhhcccc
Q 032997 86 MVTGGLIG-LMGGFMYAYQNSAGR 108 (129)
Q Consensus 86 mr~ag~iG-~~GGfl~aYqrS~~R 108 (129)
|.+-|+.| +++|.|++|.||-.|
T Consensus 48 L~vmgfFgff~~gImlsyvRSKK~ 71 (129)
T PF02060_consen 48 LVVMGFFGFFTVGIMLSYVRSKKR 71 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44445556 667899999999765
No 21
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=27.21 E-value=83 Score=21.33 Aligned_cols=15 Identities=20% Similarity=0.273 Sum_probs=12.6
Q ss_pred cccCCCCchhhhccc
Q 032997 15 VIDRNPPFTAVVGNF 29 (129)
Q Consensus 15 vID~dP~f~rVv~yf 29 (129)
+...||+|.+-++.-
T Consensus 18 L~~~DP~fa~~l~~~ 32 (82)
T PF11239_consen 18 LRADDPRFAARLRSG 32 (82)
T ss_pred HHhcCcHHHHHhccC
Confidence 567899999999885
No 22
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=26.63 E-value=20 Score=29.39 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=17.1
Q ss_pred CcccCCC-CchhhhcccChhHHHH
Q 032997 14 PVIDRNP-PFTAVVGNFNTLDYLR 36 (129)
Q Consensus 14 PvID~dP-~f~rVv~yfR~SDY~~ 36 (129)
=+||+|| .|.-|+-|+|-.-.+.
T Consensus 67 YlIDRDP~~FgpvLNylRhgklvl 90 (210)
T KOG2715|consen 67 YLIDRDPFYFGPVLNYLRHGKLVL 90 (210)
T ss_pred eEeccCcchHHHHHHHHhcchhhh
Confidence 3899999 4778888888554443
No 23
>PF15353 HECA: Headcase protein family homologue
Probab=25.86 E-value=43 Score=25.08 Aligned_cols=29 Identities=21% Similarity=0.445 Sum_probs=23.5
Q ss_pred HHHhhccccccCcCCCHHHHHHhhhcCCC
Q 032997 100 YAYQNSAGRLMGFFPNEGEVARYQKRGFS 128 (129)
Q Consensus 100 ~aYqrS~~Rf~G~~EN~rEv~ry~~~~~~ 128 (129)
+.+-++.+|.-||+|=+|-.....|+|++
T Consensus 57 L~~L~~~GraRsWse~QrrqnLWtKKGyd 85 (107)
T PF15353_consen 57 LKYLKSTGRARSWSEKQRRQNLWTKKGYD 85 (107)
T ss_pred HHHHHhcccccCCCHHHHHHHHhHHhhhh
Confidence 34567899999999999988888887753
No 24
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.82 E-value=1.8e+02 Score=22.04 Aligned_cols=17 Identities=18% Similarity=0.341 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHH
Q 032997 85 SMVTGGLIGLMGGFMYA 101 (129)
Q Consensus 85 amr~ag~iG~~GGfl~a 101 (129)
-|.+-.+|||++|++-.
T Consensus 76 glIv~lllGf~AG~lnv 92 (116)
T COG5336 76 GLIVFLLLGFGAGVLNV 92 (116)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 38888999999999864
No 25
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=25.74 E-value=2.2e+02 Score=19.73 Aligned_cols=42 Identities=21% Similarity=0.165 Sum_probs=22.8
Q ss_pred ccCCCCchhhhcccChhHHHHHHHhhhhhhHHHHHhcccchh
Q 032997 16 IDRNPPFTAVVGNFNTLDYLRFSSITGVSVVVGYLSGIIPLH 57 (129)
Q Consensus 16 ID~dP~f~rVv~yfR~SDY~~~a~~ta~~~~~~y~~~~~p~~ 57 (129)
|-+||.|++.++=-|.-=....+...+.-.++-.+.+..|.-
T Consensus 1 i~~~p~f~~L~r~r~r~~~~l~~i~l~~y~~~~ll~a~~p~~ 42 (91)
T PF04341_consen 1 ILRSPEFQELVRRRRRLAWPLSAIFLVLYFGFVLLSAFAPEL 42 (91)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
Confidence 456788888776544433444333333333333446766666
No 26
>PF11981 DUF3482: Domain of unknown function (DUF3482); InterPro: IPR021871 This presumed domain is functionally uncharacterised. This domain is found in bacteria and eukaryotes. This domain is typically between 289 to 301 amino acids in length. This domain is found associated with PF01926 from PFAM.
Probab=25.46 E-value=1.1e+02 Score=25.96 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=14.5
Q ss_pred CCchHHHHHHHH-HHHHHHHHHhh
Q 032997 82 KGPSMVTGGLIG-LMGGFMYAYQN 104 (129)
Q Consensus 82 ~~~amr~ag~iG-~~GGfl~aYqr 104 (129)
.|.++-++++|| ++||.+-..++
T Consensus 167 gG~SLG~gaaiGal~Gg~~~~~~~ 190 (292)
T PF11981_consen 167 GGLSLGAGAAIGALAGGAWQGGRR 190 (292)
T ss_pred hhhhhHHHHHHHHHHHHHHhhhhh
Confidence 456677777887 55666544444
No 27
>COG3162 Predicted membrane protein [Function unknown]
Probab=25.24 E-value=2.1e+02 Score=21.30 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=20.2
Q ss_pred CCCCCcccCCCCchhhhcccChhH
Q 032997 10 KPQYPVIDRNPPFTAVVGNFNTLD 33 (129)
Q Consensus 10 ~p~YPvID~dP~f~rVv~yfR~SD 33 (129)
++.|.=||.+|+|...++=.|.=-
T Consensus 3 ~~iy~~i~a~p~f~eLv~kr~~Fa 26 (102)
T COG3162 3 DTIYQRIAANPRFRELVRKRRRFA 26 (102)
T ss_pred cccccccccCHhHHHHHHHHHHHH
Confidence 677999999999999998877533
No 28
>COG4425 Predicted membrane protein [Function unknown]
Probab=24.88 E-value=1.9e+02 Score=27.15 Aligned_cols=72 Identities=28% Similarity=0.496 Sum_probs=38.4
Q ss_pred HHHHHhhhhhhHHHHHhcccchhhhhhhhhhhhhhhccc-ccCCCCCCCCchHHHHHHHHHHHHHHH--HHhhccccccC
Q 032997 35 LRFSSITGVSVVVGYLSGIIPLHLHYLSHRVWIFNFINI-DAGIKPGLKGPSMVTGGLIGLMGGFMY--AYQNSAGRLMG 111 (129)
Q Consensus 35 ~~~a~~ta~~~~~~y~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~amr~ag~iG~~GGfl~--aYqrS~~Rf~G 111 (129)
..=+...+++.++||..|.+ + |-+|-|.|-.. .+ ..+....++..++++++.++-... -.|||.-+|||
T Consensus 75 l~qgv~sgf~~A~Gy~~gv~---~----~wl~~y~elp~~s~-~~~R~~~~~~ai~~~~~a~~fl~qa~~wqntvr~Lmg 146 (588)
T COG4425 75 LFQGVLSGFSLAAGYGAGVF---L----HWLWRYLELPESSP-RPPRWAKPAAAIVGAAGAVGFLVQAAVWQNTVRDLMG 146 (588)
T ss_pred HHHHHHHHHHHHhhhHHHHH---H----HHHHHHhhCCCCCC-CCcchhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhC
Confidence 33344556666677776633 2 22455554222 11 111123455555566665443332 36999999999
Q ss_pred cCC
Q 032997 112 FFP 114 (129)
Q Consensus 112 ~~E 114 (129)
...
T Consensus 147 l~~ 149 (588)
T COG4425 147 LEP 149 (588)
T ss_pred CCC
Confidence 753
No 29
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=24.68 E-value=74 Score=30.56 Aligned_cols=17 Identities=18% Similarity=0.473 Sum_probs=15.1
Q ss_pred HHHHHHHHHhhcccccc
Q 032997 94 LMGGFMYAYQNSAGRLM 110 (129)
Q Consensus 94 ~~GGfl~aYqrS~~Rf~ 110 (129)
|+...++-||+-|.||.
T Consensus 590 fL~~l~l~y~~~SKR~v 606 (840)
T PF04147_consen 590 FLCTLLLEYQSLSKRFV 606 (840)
T ss_pred HHHHHHHHHHHHhcccC
Confidence 77888999999999984
No 30
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=23.91 E-value=1.9e+02 Score=17.90 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=17.4
Q ss_pred CchHHHHHHHHHHHHHHHHHhh
Q 032997 83 GPSMVTGGLIGLMGGFMYAYQN 104 (129)
Q Consensus 83 ~~amr~ag~iG~~GGfl~aYqr 104 (129)
+--+....++|+++|+...|+.
T Consensus 32 p~~~~~g~llG~~~g~~~~~~~ 53 (55)
T PF09527_consen 32 PWFTLIGLLLGIAAGFYNVYRL 53 (55)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4457788899999999888764
No 31
>PF11742 DUF3302: Protein of unknown function (DUF3302); InterPro: IPR011223 This is a family of uncharacterised bacterial proteins, restricted to the Gammaproteobacteria.
Probab=22.19 E-value=2.9e+02 Score=19.47 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=22.1
Q ss_pred CCchHHHHHHHHHHHH-------HHHHHhhccccccCcC
Q 032997 82 KGPSMVTGGLIGLMGG-------FMYAYQNSAGRLMGFF 113 (129)
Q Consensus 82 ~~~amr~ag~iG~~GG-------fl~aYqrS~~Rf~G~~ 113 (129)
..-+.-.+|++|++.+ .++||-..-.|=+|+.
T Consensus 38 q~eaI~v~gwisLft~~~lWp~a~IwA~~d~~~~g~~~~ 76 (78)
T PF11742_consen 38 QAEAIHVLGWISLFTLHVLWPFAWIWAYLDRPDRGWGFQ 76 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCCCCC
Confidence 4566888899996543 5678887777766554
No 32
>PF07051 OCIA: Ovarian carcinoma immunoreactive antigen (OCIA); InterPro: IPR009764 This family consists of several ovarian carcinoma immunoreactive antigen (OCIA) and related eukaryotic sequences. The function of this family is unknown [,].
Probab=22.11 E-value=1.5e+02 Score=22.27 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=19.7
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHhhccc
Q 032997 79 PGLKGPSMVTGGLIGLMGGFMYAYQNSAG 107 (129)
Q Consensus 79 ~~~~~~amr~ag~iG~~GGfl~aYqrS~~ 107 (129)
|.+.-|.+.++|++|.+.|=+ .|++-|.
T Consensus 71 rfG~~PKv~~ag~~Gy~~GK~-SY~~~C~ 98 (111)
T PF07051_consen 71 RFGSLPKVAFAGILGYFVGKI-SYQGTCQ 98 (111)
T ss_pred ccccccHHHHHHHHHHhhhHH-HHHHHHH
Confidence 334557899999999888854 5665554
No 33
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=21.77 E-value=1.1e+02 Score=20.60 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=24.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhccccccCcCCCHHHHHHhhhcC
Q 032997 82 KGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYQKRG 126 (129)
Q Consensus 82 ~~~amr~ag~iG~~GGfl~aYqrS~~Rf~G~~EN~rEv~ry~~~~ 126 (129)
...++.++|++|++|-.+|.- ..|=+==.|-=+++|++++.|
T Consensus 5 ~r~~~~~ggfVg~iG~a~Ypi---~~~Pmm~~eeYk~~Q~~nR~g 46 (58)
T PF15061_consen 5 WRYALFVGGFVGLIGAALYPI---YFRPMMNPEEYKKEQKINRAG 46 (58)
T ss_pred ccchhhHHHHHHHHHHHHhhh---hcccccChHHHHHHHHHHHhc
Confidence 556788889999888777642 233332233334555555444
No 34
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=21.35 E-value=46 Score=29.51 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=16.5
Q ss_pred hhcccccCCCCCC-CCchHHHHHHHHHH
Q 032997 69 NFINIDAGIKPGL-KGPSMVTGGLIGLM 95 (129)
Q Consensus 69 ~~~~~~~~~~~~~-~~~amr~ag~iG~~ 95 (129)
.||.+|++..+|. ++-...+||++|+.
T Consensus 52 fe~tvGatl~KG~nR~lGTl~aG~La~~ 79 (406)
T PF11744_consen 52 FEPTVGATLSKGLNRGLGTLLAGILAFG 79 (406)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777766665 44456666766653
Done!