Query 032997
Match_columns 129
No_of_seqs 100 out of 102
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 13:49:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032997.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032997hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k21_A Potassium voltage-gated 37.9 20 0.00067 26.9 2.5 23 86-108 57-80 (138)
2 2l9d_A Uncharacterized protein 31.1 12 0.00041 26.9 0.4 13 27-39 23-35 (108)
3 3qap_A Sensory rhodopsin-2; ph 24.9 77 0.0026 24.5 4.1 34 79-115 30-63 (239)
4 1q90_M Cytochrome B6F complex 18.7 52 0.0018 19.7 1.5 25 86-116 13-37 (39)
5 1nn7_A Potassium channel KV4.2 13.8 35 0.0012 23.2 -0.2 20 14-33 42-62 (105)
6 1vf5_F Protein PET M; photosyn 13.5 1.6E+02 0.0056 17.0 2.7 22 86-113 12-33 (35)
7 3qb8_A A654L protein; GNAT N-a 13.4 88 0.003 20.6 1.7 30 99-128 134-163 (197)
8 1jb0_L Photosystem 1 reaction 12.9 4.4E+02 0.015 19.8 5.6 66 27-103 66-137 (154)
9 2l6x_A GPR, green-light absorb 12.2 3.2E+02 0.011 20.9 4.9 41 79-122 38-78 (243)
10 3cx5_E Cytochrome B-C1 complex 11.1 3.1E+02 0.011 20.2 4.3 14 2-15 1-14 (185)
No 1
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=37.92 E-value=20 Score=26.86 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=17.6
Q ss_pred HHHHHHHH-HHHHHHHHHhhcccc
Q 032997 86 MVTGGLIG-LMGGFMYAYQNSAGR 108 (129)
Q Consensus 86 mr~ag~iG-~~GGfl~aYqrS~~R 108 (129)
|.+-++.| |++|.|++|.||-.|
T Consensus 57 L~vmgffgff~~GImLsYiRSKk~ 80 (138)
T 2k21_A 57 LMVLGFFGFFTLGIMLSYIRSKKL 80 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhc
Confidence 44456666 678999999999766
No 2
>2l9d_A Uncharacterized protein; PG9854E, structural genomics, PSI-biology, protein structure initiative, unknown function; NMR {Methylobacillus flagellatus}
Probab=31.13 E-value=12 Score=26.92 Aligned_cols=13 Identities=15% Similarity=0.235 Sum_probs=9.8
Q ss_pred cccChhHHHHHHH
Q 032997 27 GNFNTLDYLRFSS 39 (129)
Q Consensus 27 ~yfR~SDY~~~a~ 39 (129)
+=||||||+-=..
T Consensus 23 k~FRPSDWAERL~ 35 (108)
T 2l9d_A 23 KPFRPSDWVDRMC 35 (108)
T ss_dssp CBCSCTTHHHHHH
T ss_pred CCcCCchHHHHHh
Confidence 4599999986544
No 3
>3qap_A Sensory rhodopsin-2; phototaxis, nphtrii, membrane, transport protein; HET: RET BOG LFA L2P; 1.90A {Natronomonas pharaonis} SCOP: f.13.1.1 PDB: 1gue_A* 1gu8_A* 1h68_A* 3qdc_A* 2f93_A* 2f95_A* 2ksy_A* 1h2s_A* 1jgj_A*
Probab=24.93 E-value=77 Score=24.52 Aligned_cols=34 Identities=18% Similarity=0.047 Sum_probs=27.8
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHhhccccccCcCCC
Q 032997 79 PGLKGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN 115 (129)
Q Consensus 79 ~~~~~~amr~ag~iG~~GGfl~aYqrS~~Rf~G~~EN 115 (129)
+.+.+..+.+++++-+++.+.|.+.+|-. ||.++
T Consensus 30 ~~~~R~~~~v~~lit~iaai~Y~~Ma~~~---G~~~~ 63 (239)
T 3qap_A 30 GSGERRYYVTLVGISGIAAVAYVVMALGV---GWVPV 63 (239)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHHHTTC---CEEEE
T ss_pred CcchhhhhHHHHHHHHHHHHHHHHHHHcC---Ceeec
Confidence 34577889999999999999999999843 77775
No 4
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=18.73 E-value=52 Score=19.67 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccCcCCCH
Q 032997 86 MVTGGLIGLMGGFMYAYQNSAGRLMGFFPNE 116 (129)
Q Consensus 86 mr~ag~iG~~GGfl~aYqrS~~Rf~G~~EN~ 116 (129)
|..-.++|+..||++ .|+.|-.|+.
T Consensus 13 ~~~L~LvGla~Gf~L------Lkiqg~~ee~ 37 (39)
T 1q90_M 13 MVGMTLVGLAIGFVL------LRVESLVEEG 37 (39)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHHTC--
T ss_pred HHHHHHHHHHHHHHH------hhhhcchhhc
Confidence 555678899999998 6776655543
No 5
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=13.84 E-value=35 Score=23.16 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=14.1
Q ss_pred CcccCCC-CchhhhcccChhH
Q 032997 14 PVIDRNP-PFTAVVGNFNTLD 33 (129)
Q Consensus 14 PvID~dP-~f~rVv~yfR~SD 33 (129)
-.||+|| +|.-|+.|+|...
T Consensus 42 ~FiDRdp~~F~~ILnflR~g~ 62 (105)
T 1nn7_A 42 YFFDRDPDIFRHILNFYRTGK 62 (105)
T ss_dssp EEECSCTTTHHHHHHHHHHSC
T ss_pred EEEeCCcHHHHHHHHHHhcCC
Confidence 3589998 5666777777653
No 6
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=13.46 E-value=1.6e+02 Score=17.03 Aligned_cols=22 Identities=14% Similarity=0.030 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccCcC
Q 032997 86 MVTGGLIGLMGGFMYAYQNSAGRLMGFF 113 (129)
Q Consensus 86 mr~ag~iG~~GGfl~aYqrS~~Rf~G~~ 113 (129)
|..-.++|+..||++ .|+.|-.
T Consensus 12 ~~~LvLvGla~Gf~L------Lkiqg~~ 33 (35)
T 1vf5_F 12 SFGLIFVGWGLGVLL------LKIQGAE 33 (35)
T ss_dssp HHHHHHHHHHHHHHH------HHTTCCC
T ss_pred HHHHHHHHHHHHHHh------heeeccc
Confidence 555578899999998 5666543
No 7
>3qb8_A A654L protein; GNAT N-acetyltransferase, acetyltransferase, COA, spermine, spermidine, transferase; HET: COA; 1.50A {Paramecium bursaria chlorella virus 1}
Probab=13.42 E-value=88 Score=20.60 Aligned_cols=30 Identities=17% Similarity=0.144 Sum_probs=23.7
Q ss_pred HHHHhhccccccCcCCCHHHHHHhhhcCCC
Q 032997 99 MYAYQNSAGRLMGFFPNEGEVARYQKRGFS 128 (129)
Q Consensus 99 l~aYqrS~~Rf~G~~EN~rEv~ry~~~~~~ 128 (129)
-.+-++...++.-..+|.+=++-|+|.||.
T Consensus 134 ~~a~~~g~~~i~l~~~n~~a~~~y~k~GF~ 163 (197)
T 3qb8_A 134 EESSSHGFKYIYGDCTNIISQNMFEKHGFE 163 (197)
T ss_dssp HHHHHTTCCEEEEEECSHHHHHHHHHTTCE
T ss_pred HHHHHcCCCEEEEEcCCHHHHHHHHHCCCe
Confidence 344556677777778999999999999985
No 8
>1jb0_L Photosystem 1 reaction centre subunit XI; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.31.1.1 PDB: 3pcq_L*
Probab=12.90 E-value=4.4e+02 Score=19.79 Aligned_cols=66 Identities=17% Similarity=0.286 Sum_probs=33.0
Q ss_pred cccChhHHHHHHHhhhhhhHHHHHhcccchhhhhhhhhhhhhhhcccccCCC-CCC----CCchHHHHH-HHHHHHHHHH
Q 032997 27 GNFNTLDYLRFSSITGVSVVVGYLSGIIPLHLHYLSHRVWIFNFINIDAGIK-PGL----KGPSMVTGG-LIGLMGGFMY 100 (129)
Q Consensus 27 ~yfR~SDY~~~a~~ta~~~~~~y~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~amr~ag-~iG~~GGfl~ 100 (129)
+=.|-+|++..++.-++.-.+..+.. -+.+|..++.++... +.. .+-+...+| +||-+||-.+
T Consensus 66 GPLRnte~a~laGllsaiglv~IlT~-----------~LsiYg~~~f~~~~~~~~~l~t~~gWs~Ft~GF~iGg~GGa~~ 134 (154)
T 1jb0_L 66 GPLRDSDVANLGGLISGIALILVATA-----------CLAAYGLVSFQKGGSSSDPLKTSEGWSQFTAGFFVGAMGSAFV 134 (154)
T ss_dssp STTTTSTTHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHTSSCCCSSCGGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcCcchHHHHHHHHHHHHHHHHHH-----------HHHHhccCccCCCCCCcccccCcccHhHcccceeeecccHHHH
Confidence 33566888776665444333322211 133455444443211 111 123344444 6788899988
Q ss_pred HHh
Q 032997 101 AYQ 103 (129)
Q Consensus 101 aYq 103 (129)
||-
T Consensus 135 Ay~ 137 (154)
T 1jb0_L 135 AFF 137 (154)
T ss_dssp HHH
T ss_pred HHH
Confidence 884
No 9
>2l6x_A GPR, green-light absorbing proteorhodopsin; membrane protein structure, cell-free expre proton transport; HET: LYR; NMR {Uncultured marine gamma PROTEOBACTERIUEBAC31A08}
Probab=12.24 E-value=3.2e+02 Score=20.95 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=28.0
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHhhccccccCcCCCHHHHHHh
Q 032997 79 PGLKGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARY 122 (129)
Q Consensus 79 ~~~~~~amr~ag~iG~~GGfl~aYqrS~~Rf~G~~EN~rEv~ry 122 (129)
+.+.+..+.+++++=+++.+.|.+.++. +|++.+...+-||
T Consensus 38 ~~~~R~~~~~~~lit~iaa~~Yf~Ma~~---~~~~~~~~~~~RY 78 (243)
T 2l6x_A 38 SAKWKTSLTVSGLVTGIAFWHYMYMRGV---WIETGDSPTVFRY 78 (243)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHHHHH---HHHHSCCCHHHHH
T ss_pred CCcceehhhHHHHHHHHHHHHHHHHHHh---hcccCCccceeeh
Confidence 3457788888899888899998888876 5553222233365
No 10
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=11.08 E-value=3.1e+02 Score=20.16 Aligned_cols=14 Identities=0% Similarity=-0.114 Sum_probs=10.4
Q ss_pred CcccCCCCCCCCCc
Q 032997 2 NTDITASEKPQYPV 15 (129)
Q Consensus 2 ~~~i~~~~~p~YPv 15 (129)
++||..++-++|.-
T Consensus 1 ~~~~~~~~~~~~~~ 14 (185)
T 3cx5_E 1 KSTYRTPNFDDVLK 14 (185)
T ss_dssp CCTTSCCCCTTTBC
T ss_pred CCCccCCCchhhcc
Confidence 57888888888864
Done!