Query 032997
Match_columns 129
No_of_seqs 100 out of 102
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 13:49:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032997.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032997hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2g5ca2 c.2.1.6 (A:30-200) Pre 24.0 20 0.0014 23.1 2.2 34 93-126 10-46 (171)
2 d1yr0a1 d.108.1.1 (A:4-166) Ph 22.8 23 0.0017 22.2 2.3 28 101-128 109-138 (163)
3 d1jb0l_ f.31.1.1 (L:) Photosys 19.8 1.3E+02 0.0092 20.9 6.0 14 90-103 121-134 (151)
4 d1f39a_ b.87.1.1 (A:) lambda r 18.6 17 0.0012 22.6 0.8 27 7-33 69-98 (101)
5 d1n9la_ d.110.3.6 (A:) Putativ 17.9 10 0.00073 22.8 -0.5 26 8-34 11-36 (109)
6 d1u6ma_ d.108.1.1 (A:) Putativ 16.3 29 0.0021 21.7 1.6 22 107-128 148-169 (189)
7 d2db7a1 a.273.1.1 (A:3-57) Hai 16.2 7.4 0.00054 23.4 -1.4 16 107-122 12-27 (55)
8 d1bywa_ d.110.3.6 (A:) Erg pot 13.4 14 0.0011 21.8 -0.6 21 9-29 10-30 (110)
9 d1jnua_ d.110.3.6 (A:) Photore 12.8 19 0.0014 20.9 -0.1 25 5-29 5-29 (104)
10 d1t1da_ d.42.1.2 (A:) Shaker p 12.7 19 0.0014 22.9 -0.2 17 14-30 44-61 (100)
No 1
>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}
Probab=24.04 E-value=20 Score=23.14 Aligned_cols=34 Identities=26% Similarity=0.537 Sum_probs=21.9
Q ss_pred HHHHHHHH-HHhhc--cccccCcCCCHHHHHHhhhcC
Q 032997 93 GLMGGFMY-AYQNS--AGRLMGFFPNEGEVARYQKRG 126 (129)
Q Consensus 93 G~~GGfl~-aYqrS--~~Rf~G~~EN~rEv~ry~~~~ 126 (129)
|++|+-+. +..++ ..+.+||..|+...++..+.+
T Consensus 10 G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~ 46 (171)
T d2g5ca2 10 GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG 46 (171)
T ss_dssp SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhh
Confidence 45565443 33222 358999999998877666654
No 2
>d1yr0a1 d.108.1.1 (A:4-166) Phosphinothricin acetyltransferase {Agrobacterium tumefaciens [TaxId: 358]}
Probab=22.82 E-value=23 Score=22.17 Aligned_cols=28 Identities=21% Similarity=0.171 Sum_probs=23.1
Q ss_pred HHhhccccccC--cCCCHHHHHHhhhcCCC
Q 032997 101 AYQNSAGRLMG--FFPNEGEVARYQKRGFS 128 (129)
Q Consensus 101 aYqrS~~Rf~G--~~EN~rEv~ry~~~~~~ 128 (129)
|-++...|++. ..+|.+-++-|+|.||.
T Consensus 109 a~~~g~~~l~~~v~~~N~~a~~~y~k~GF~ 138 (163)
T d1yr0a1 109 AGGNDVHVLIAAIEAENTASIRLHESLGFR 138 (163)
T ss_dssp HHTTTCCEEEEEEETTCHHHHHHHHHTTCE
T ss_pred ccccccceEEEEEecCCHHHHHHHHHCCCE
Confidence 45666778777 57899999999999995
No 3
>d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI, PsaL {Synechococcus elongatus [TaxId: 32046]}
Probab=19.78 E-value=1.3e+02 Score=20.94 Aligned_cols=14 Identities=29% Similarity=0.470 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHh
Q 032997 90 GLIGLMGGFMYAYQ 103 (129)
Q Consensus 90 g~iG~~GGfl~aYq 103 (129)
=++|-+||-.+||-
T Consensus 121 F~~Gg~GGa~fAy~ 134 (151)
T d1jb0l_ 121 FFVGAMGSAFVAFF 134 (151)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhccccHHHHHHH
Confidence 35788899988874
No 4
>d1f39a_ b.87.1.1 (A:) lambda repressor C-terminal domain {Bacteriophage lambda [TaxId: 10710]}
Probab=18.58 E-value=17 Score=22.62 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=19.2
Q ss_pred CCCCCCCCcccCCCCch---hhhcccChhH
Q 032997 7 ASEKPQYPVIDRNPPFT---AVVGNFNTLD 33 (129)
Q Consensus 7 ~~~~p~YPvID~dP~f~---rVv~yfR~SD 33 (129)
.+.+|+||-|.-+..++ +||..++|.|
T Consensus 69 ~s~N~~y~~i~~~~~~~IiG~Vv~s~~p~~ 98 (101)
T d1f39a_ 69 QPLNPQYPMIPCNESCSVVGKVIASQWPEE 98 (101)
T ss_dssp ECSSTTSCCEECSTTCEEEEEEEEEECCGG
T ss_pred EECCCCCCCCcCCCCcEEEEEEEEEECcHH
Confidence 46789999886655543 7777777765
No 5
>d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1 domain {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=17.88 E-value=10 Score=22.78 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=21.4
Q ss_pred CCCCCCCcccCCCCchhhhcccChhHH
Q 032997 8 SEKPQYPVIDRNPPFTAVVGNFNTLDY 34 (129)
Q Consensus 8 ~~~p~YPvID~dP~f~rVv~yfR~SDY 34 (129)
...|+.++|..||.|.+..+| ..++.
T Consensus 11 a~~pdg~Ii~vN~a~~~~~Gy-~~~El 36 (109)
T d1n9la_ 11 ATLPDCPLVYASEGFYAMTGY-GPDEV 36 (109)
T ss_dssp TTSTTCCEEEECHHHHHHHCC-CHHHH
T ss_pred CCCCCCeEEEEcHHHHHHHCc-CHHHH
Confidence 345899999999999999999 45554
No 6
>d1u6ma_ d.108.1.1 (A:) Putative acetyltransferase EF0945 {Enterococcus faecalis [TaxId: 1351]}
Probab=16.31 E-value=29 Score=21.66 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=17.9
Q ss_pred ccccCcCCCHHHHHHhhhcCCC
Q 032997 107 GRLMGFFPNEGEVARYQKRGFS 128 (129)
Q Consensus 107 ~Rf~G~~EN~rEv~ry~~~~~~ 128 (129)
.++.-..+|.+-+.-|+|.||.
T Consensus 148 ~~l~v~~~N~~a~~~Yek~GF~ 169 (189)
T d1u6ma_ 148 LGLNVDFDNPGARKLYASKGFK 169 (189)
T ss_dssp EEEEEETTCHHHHHHHHTTTCE
T ss_pred eEEEEcCCCHHHHHHHHHCCCE
Confidence 3455666999999999999995
No 7
>d2db7a1 a.273.1.1 (A:3-57) Hairy/enhancer-of-split related with YRPW motif protein 1; HESR-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.22 E-value=7.4 Score=23.40 Aligned_cols=16 Identities=50% Similarity=0.607 Sum_probs=13.6
Q ss_pred ccccCcCCCHHHHHHh
Q 032997 107 GRLMGFFPNEGEVARY 122 (129)
Q Consensus 107 ~Rf~G~~EN~rEv~ry 122 (129)
.|=+||+|=..||.||
T Consensus 12 yra~GF~ECa~EV~Ry 27 (55)
T d2db7a1 12 YRSLGFRECLAEVARY 27 (55)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHH
Confidence 3556999999999999
No 8
>d1bywa_ d.110.3.6 (A:) Erg potassium channel, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.42 E-value=14 Score=21.80 Aligned_cols=21 Identities=24% Similarity=0.213 Sum_probs=17.9
Q ss_pred CCCCCCcccCCCCchhhhccc
Q 032997 9 EKPQYPVIDRNPPFTAVVGNF 29 (129)
Q Consensus 9 ~~p~YPvID~dP~f~rVv~yf 29 (129)
..+|++|+..+|.|.++.+|=
T Consensus 10 ~~~d~~I~~~N~a~~~l~G~~ 30 (110)
T d1bywa_ 10 RVENCAVIYCNDGFCELCGYS 30 (110)
T ss_dssp TSSSCBEEEECHHHHHHHTCC
T ss_pred CCCCCEEEEEcHHHHHHhCCC
Confidence 347899999999999999883
No 9
>d1jnua_ d.110.3.6 (A:) Photoreceptor phy3 flavin-binding domain, lov2 {Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818]}
Probab=12.84 E-value=19 Score=20.86 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=20.2
Q ss_pred cCCCCCCCCCcccCCCCchhhhccc
Q 032997 5 ITASEKPQYPVIDRNPPFTAVVGNF 29 (129)
Q Consensus 5 i~~~~~p~YPvID~dP~f~rVv~yf 29 (129)
||-...|+-.+|..||.|.++.+|-
T Consensus 5 i~d~~~pd~~I~y~N~a~~~~~G~s 29 (104)
T d1jnua_ 5 ITDPRLPDNPIIFASDRFLELTEYT 29 (104)
T ss_dssp EECTTSTTCCEEEECHHHHHHHTCC
T ss_pred EEcCCCCCCEEEEEcHHHHHHHCcC
Confidence 4445567888999999999999984
No 10
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}
Probab=12.74 E-value=19 Score=22.86 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=10.3
Q ss_pred CcccCCCCc-hhhhcccC
Q 032997 14 PVIDRNPPF-TAVVGNFN 30 (129)
Q Consensus 14 PvID~dP~f-~rVv~yfR 30 (129)
=.||+||.. +-|+.|.|
T Consensus 44 ~FiDRdp~~F~~IL~flR 61 (100)
T d1t1da_ 44 YFFDRNRPSFDAILYFYQ 61 (100)
T ss_dssp EEECSCSTTHHHHHHHHH
T ss_pred EEEecCHHHHHHHHHHHh
Confidence 368999964 44444444
Done!