BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032998
(129 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RBB3|NOB1_PONAB RNA-binding protein NOB1 OS=Pongo abelii GN=NOB1 PE=2 SV=1
Length = 411
Score = 97.8 bits (242), Expect = 2e-20, Method: Composition-based stats.
Identities = 46/96 (47%), Positives = 67/96 (69%), Gaps = 4/96 (4%)
Query: 35 VACITGDYAMQNVILQMGLRLLAPGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNG 94
V C+T D+AMQNV+LQMGL +LA GM IR+ +IL+CH C+ T+++ R+FC CGN
Sbjct: 231 VGCVTTDFAMQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCSHCGN- 289
Query: 95 GTLRKVAVTVGENGIVLA--SRRPRI-TLRGTKVSI 127
TL+KV+VTV ++G + SR P++ RG + S+
Sbjct: 290 KTLKKVSVTVSDDGTLHMHFSRNPKVLNPRGLRYSL 325
>sp|Q3T042|NOB1_BOVIN RNA-binding protein NOB1 OS=Bos taurus GN=NOB1 PE=2 SV=1
Length = 413
Score = 97.8 bits (242), Expect = 2e-20, Method: Composition-based stats.
Identities = 46/96 (47%), Positives = 67/96 (69%), Gaps = 4/96 (4%)
Query: 35 VACITGDYAMQNVILQMGLRLLAPGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNG 94
V C+T D+AMQNV+LQMGL +LA GM IR+ +IL+CH C+ T+++ R+FC CGN
Sbjct: 233 VGCVTTDFAMQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCAHCGN- 291
Query: 95 GTLRKVAVTVGENGIVLA--SRRPRI-TLRGTKVSI 127
TL+KV+VTV ++G + SR P++ RG + S+
Sbjct: 292 KTLKKVSVTVSDDGTLHMHFSRNPKVLNPRGLRYSL 327
>sp|Q4R537|NOB1_MACFA RNA-binding protein NOB1 OS=Macaca fascicularis GN=NOB1 PE=2 SV=1
Length = 412
Score = 97.8 bits (242), Expect = 2e-20, Method: Composition-based stats.
Identities = 46/96 (47%), Positives = 67/96 (69%), Gaps = 4/96 (4%)
Query: 35 VACITGDYAMQNVILQMGLRLLAPGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNG 94
V C+T D+AMQNV+LQMGL +LA GM IR+ +IL+CH C+ T+++ R+FC CGN
Sbjct: 232 VGCVTTDFAMQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCAHCGN- 290
Query: 95 GTLRKVAVTVGENGIVLA--SRRPRI-TLRGTKVSI 127
TL+KV+VTV ++G + SR P++ RG + S+
Sbjct: 291 KTLKKVSVTVSDDGALHMHFSRNPKVLNPRGLRYSL 326
>sp|Q9ULX3|NOB1_HUMAN RNA-binding protein NOB1 OS=Homo sapiens GN=NOB1 PE=1 SV=1
Length = 412
Score = 97.4 bits (241), Expect = 2e-20, Method: Composition-based stats.
Identities = 46/96 (47%), Positives = 67/96 (69%), Gaps = 4/96 (4%)
Query: 35 VACITGDYAMQNVILQMGLRLLAPGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNG 94
V C+T D+AMQNV+LQMGL +LA GM IR+ +IL+CH C+ T+++ R+FC CGN
Sbjct: 232 VGCLTTDFAMQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCSHCGN- 290
Query: 95 GTLRKVAVTVGENGIVLA--SRRPRI-TLRGTKVSI 127
TL+KV+VTV ++G + SR P++ RG + S+
Sbjct: 291 KTLKKVSVTVSDDGTLHMHFSRNPKVLNPRGLRYSL 326
>sp|Q6VEU1|NOB1_RAT RNA-binding protein NOB1 OS=Rattus norvegicus GN=Nob1 PE=2 SV=1
Length = 410
Score = 96.3 bits (238), Expect = 5e-20, Method: Composition-based stats.
Identities = 44/96 (45%), Positives = 67/96 (69%), Gaps = 4/96 (4%)
Query: 35 VACITGDYAMQNVILQMGLRLLAPGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNG 94
V C+T D+AMQNV+LQMGL +LA GM +R+ +IL+CH C+ T+++ R+FC CGN
Sbjct: 230 VGCVTTDFAMQNVLLQMGLHVLAVNGMLVREARSYILRCHGCFKTTSDMNRVFCGHCGN- 288
Query: 95 GTLRKVAVTVGENGIVLA--SRRPRI-TLRGTKVSI 127
TL+KV+VT+ ++G + SR P++ RG + S+
Sbjct: 289 KTLKKVSVTINDDGTLHMHFSRNPKVLNPRGLRYSL 324
>sp|Q8BW10|NOB1_MOUSE RNA-binding protein NOB1 OS=Mus musculus GN=Nob1 PE=1 SV=1
Length = 403
Score = 96.3 bits (238), Expect = 5e-20, Method: Composition-based stats.
Identities = 44/96 (45%), Positives = 67/96 (69%), Gaps = 4/96 (4%)
Query: 35 VACITGDYAMQNVILQMGLRLLAPGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNG 94
V C+T D+AMQNV+LQMGL +LA GM +R+ +IL+CH C+ T+++ R+FC CGN
Sbjct: 223 VGCVTTDFAMQNVLLQMGLHVLAVNGMLVREARSYILRCHGCFKTTSDMNRVFCGHCGN- 281
Query: 95 GTLRKVAVTVGENGIVLA--SRRPRI-TLRGTKVSI 127
TL+KV+VT+ ++G + SR P++ RG + S+
Sbjct: 282 KTLKKVSVTINDDGTLHMHFSRNPKVLNPRGLRYSL 317
>sp|Q9UTK0|NOB1_SCHPO 20S-pre-rRNA D-site endonuclease nob1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=nob1 PE=3 SV=1
Length = 388
Score = 82.8 bits (203), Expect = 6e-16, Method: Composition-based stats.
Identities = 39/95 (41%), Positives = 59/95 (62%), Gaps = 3/95 (3%)
Query: 35 VACITGDYAMQNVILQMGLRLLAPGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNG 94
VAC T D++MQNV+LQ+GL L++ G +I+ + R++L+CH CYT+ ++ + FCP CG G
Sbjct: 218 VACATTDFSMQNVLLQIGLNLVSSDGFKIQNVKRFVLRCHGCYTVVKDMEKKFCPSCG-G 276
Query: 95 GTLRKVAVTVGENG--IVLASRRPRITLRGTKVSI 127
TL K ++ G V + RGTK S+
Sbjct: 277 NTLIKTTCSINSKGEFQVHLKKNFEWKTRGTKYSL 311
>sp|Q08444|NOB1_YEAST 20S-pre-rRNA D-site endonuclease NOB1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NOB1 PE=1 SV=1
Length = 459
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/78 (43%), Positives = 51/78 (65%), Gaps = 5/78 (6%)
Query: 32 ESTVACITGDYAMQNVILQMGLRLLA-PGGMQIRQLHRWILKCHACYTI--TAEIGRI-- 86
E+ VA TGD+A+QNV LQM L L+ G++I+++ ++L+CHAC+ I + G+
Sbjct: 262 ENQVALATGDFAVQNVALQMNLNLMNFMSGLKIKRIRNYMLRCHACFKIFPLPKDGKPKH 321
Query: 87 FCPKCGNGGTLRKVAVTV 104
FC CG GTL + AV+V
Sbjct: 322 FCASCGGQGTLLRCAVSV 339
>sp|O29862|VAPC8_ARCFU Putative ribonuclease VapC8 OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=vapC8 PE=3 SV=1
Length = 166
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 33 STVACITGDYAMQNVILQMGLRLLAPGGMQIRQLHRWILKCHAC-YTITAEIGRIFCPKC 91
+ V +T DYA+QNV + +G+R QI + +W+ C C I +EI CP C
Sbjct: 93 NEVVLVTDDYAIQNVAMSLGIRFDGILHRQISKEFKWVKVCRGCGRRIESEI----CPVC 148
Query: 92 GNGGTLRKV 100
G+ +R+V
Sbjct: 149 GSEAIIRRV 157
>sp|Q05DH4|F16A1_HUMAN Protein FAM160A1 OS=Homo sapiens GN=FAM160A1 PE=2 SV=2
Length = 1040
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 45 QNVILQMGLRLLAP-GGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNGGTLRKVAVT 103
++V+LQ+ LR L P M + Q RW +K CY+++A P C + G + +T
Sbjct: 400 EDVMLQLVLRYLIPCNHMMLSQ--RWAVKERDCYSVSAAKLLALTPVCCSSG----ITLT 453
Query: 104 VG 105
+G
Sbjct: 454 LG 455
>sp|Q505K2|F16A1_MOUSE Protein FAM160A1 OS=Mus musculus GN=Fam160a1 PE=2 SV=2
Length = 1081
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 45 QNVILQMGLRLLAP-GGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNGGTLRKVAVT 103
++V+LQ+ LR L P M + Q RW +K CY+++A P C G + +T
Sbjct: 400 EDVMLQLVLRYLVPCNHMMLSQ--RWAVKERDCYSVSAAKLLALTPVCCASG----ITLT 453
Query: 104 VG 105
+G
Sbjct: 454 LG 455
>sp|O27890|VAPC2_METTH Putative ribonuclease VapC2 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=vapC2 PE=3 SV=1
Length = 171
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 5 SKNNEIVDVSYVDDECSEQSWMLRSLSESTVACITGDYAMQNV--ILQMGLRLLAPGGMQ 62
S++ +I+ +S D E + LR + TV IT DY +QN IL +G R + G
Sbjct: 75 SESGDIMRLSPTDMEVIGLAVSLRGKDDVTV--ITDDYTIQNTLKILGIGFRSVLTSG-- 130
Query: 63 IRQLHRWILKCHAC---YTITAEIGRIFCPKCGN 93
IR + W C C Y + E C CG+
Sbjct: 131 IRDTYSWRRVCTGCRRVYPLDYEFEE--CEICGS 162
>sp|P57674|VAPC1_THEAC Putative ribonuclease VapC1 OS=Thermoplasma acidophilum (strain
ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=vapC1 PE=3 SV=1
Length = 194
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 2 EISSKNNEIVDVSYVDDECSEQSWMLRSLSESTVACITGDYAMQNVILQMGLRLLAPGGM 61
E ++K +++++S D + +L + +T DY++QNV + L L
Sbjct: 94 ETAAKTGDLMNLSQTDKD------VLALALQYDATIVTDDYSIQNVASYLNLGFLNANIK 147
Query: 62 QIRQLHRWILKCHACYTITAEIGRIFCPKCGN 93
+I + WI +C C + ++ C CG+
Sbjct: 148 RIDKQIAWIYRCTGCKKVFPGPVKV-CDICGH 178
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,890,268
Number of Sequences: 539616
Number of extensions: 1613693
Number of successful extensions: 3709
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3690
Number of HSP's gapped (non-prelim): 14
length of query: 129
length of database: 191,569,459
effective HSP length: 95
effective length of query: 34
effective length of database: 140,305,939
effective search space: 4770401926
effective search space used: 4770401926
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)