Query 032998
Match_columns 129
No_of_seqs 102 out of 306
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 13:50:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032998.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032998hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2con_A RUH-035 protein, NIN on 100.0 1.8E-32 6.2E-37 189.1 5.1 72 57-129 2-76 (79)
2 2lcq_A Putative toxin VAPC6; P 99.7 8.7E-19 3E-23 131.1 3.8 67 32-101 95-162 (165)
3 3irb_A Uncharacterized protein 96.9 0.0004 1.4E-08 51.2 2.7 43 65-110 42-84 (145)
4 2gnr_A Conserved hypothetical 96.7 0.00088 3E-08 49.6 2.6 40 67-110 44-84 (145)
5 2kdx_A HYPA, hydrogenase/ureas 96.3 0.0032 1.1E-07 44.5 3.8 31 67-98 70-102 (119)
6 3i8o_A KH domain-containing pr 95.3 0.01 3.5E-07 44.1 3.1 29 32-60 104-132 (142)
7 2apo_B Ribosome biogenesis pro 95.2 0.008 2.8E-07 39.0 1.9 29 70-102 6-34 (60)
8 3a43_A HYPD, hydrogenase nicke 94.9 0.021 7E-07 41.8 3.5 31 67-98 67-119 (139)
9 3pwf_A Rubrerythrin; non heme 94.8 0.014 4.8E-07 44.0 2.4 26 67-94 137-162 (170)
10 6rxn_A Rubredoxin; electron tr 94.7 0.012 4.3E-07 36.1 1.7 24 71-94 5-39 (46)
11 2aus_D NOP10, ribosome biogene 94.7 0.014 4.9E-07 37.8 2.0 27 70-100 5-31 (60)
12 1twf_L ABC10-alpha, DNA-direct 94.7 0.016 5.5E-07 38.4 2.2 32 67-99 25-58 (70)
13 3ix7_A Uncharacterized protein 94.1 0.02 6.8E-07 42.0 1.8 28 32-59 96-123 (134)
14 4ayb_P DNA-directed RNA polyme 93.8 0.022 7.6E-07 35.5 1.4 31 70-101 3-38 (48)
15 1lko_A Rubrerythrin all-iron(I 93.2 0.069 2.4E-06 40.5 3.6 26 69-94 154-180 (191)
16 1yuz_A Nigerythrin; rubrythrin 93.2 0.045 1.5E-06 42.1 2.5 25 70-94 171-195 (202)
17 4rxn_A Rubredoxin; electron tr 92.4 0.057 2E-06 34.1 1.8 25 70-94 3-45 (54)
18 1e8j_A Rubredoxin; iron-sulfur 92.1 0.079 2.7E-06 33.0 2.2 25 70-94 3-45 (52)
19 2jrp_A Putative cytoplasmic pr 91.3 0.12 4E-06 35.3 2.4 27 70-100 18-44 (81)
20 2v3b_B Rubredoxin 2, rubredoxi 91.1 0.12 4.2E-06 32.5 2.3 25 70-94 3-45 (55)
21 1yk4_A Rubredoxin, RD; electro 90.9 0.14 4.6E-06 31.9 2.3 25 70-94 2-44 (52)
22 1s24_A Rubredoxin 2; electron 90.5 0.14 4.9E-06 35.2 2.4 25 70-94 35-77 (87)
23 3cng_A Nudix hydrolase; struct 90.3 0.35 1.2E-05 35.1 4.5 56 72-128 5-70 (189)
24 2kn9_A Rubredoxin; metalloprot 90.3 0.15 5.2E-06 34.7 2.3 25 70-94 27-69 (81)
25 1dx8_A Rubredoxin; electron tr 89.8 0.14 4.9E-06 33.7 1.8 25 70-94 7-49 (70)
26 3h0g_L DNA-directed RNA polyme 89.5 0.12 4.3E-06 33.6 1.3 32 68-100 19-52 (63)
27 1vk6_A NADH pyrophosphatase; 1 88.7 0.21 7.3E-06 39.5 2.5 55 71-128 108-169 (269)
28 2gmg_A Hypothetical protein PF 87.6 0.22 7.4E-06 35.5 1.6 34 65-99 62-97 (105)
29 3na7_A HP0958; flagellar bioge 87.0 0.22 7.5E-06 39.0 1.5 34 51-94 189-231 (256)
30 3j20_Y 30S ribosomal protein S 86.5 0.29 9.8E-06 30.1 1.6 9 85-93 37-45 (50)
31 3p8b_A DNA-directed RNA polyme 86.4 0.42 1.4E-05 32.6 2.5 23 71-97 24-46 (81)
32 3j21_g 50S ribosomal protein L 85.6 0.65 2.2E-05 29.0 2.9 31 67-99 11-41 (51)
33 1ryq_A DNA-directed RNA polyme 84.4 0.63 2.2E-05 30.8 2.5 22 70-94 11-32 (69)
34 1m2k_A Silent information regu 83.9 0.74 2.5E-05 35.9 3.2 27 68-94 119-151 (249)
35 2k4x_A 30S ribosomal protein S 82.1 0.49 1.7E-05 29.6 1.2 9 85-93 36-44 (55)
36 2jne_A Hypothetical protein YF 81.7 0.91 3.1E-05 32.1 2.6 42 71-116 49-95 (101)
37 1yc5_A NAD-dependent deacetyla 80.1 0.81 2.8E-05 35.6 2.1 27 68-94 119-154 (246)
38 1q14_A HST2 protein; histone d 79.8 0.98 3.3E-05 37.6 2.6 27 68-94 142-180 (361)
39 1ma3_A SIR2-AF2, transcription 79.2 1.3 4.4E-05 34.6 3.0 27 68-94 121-157 (253)
40 1q1a_A HST2 protein; ternary c 78.4 0.96 3.3E-05 36.0 2.1 27 68-94 134-172 (289)
41 1vq8_1 50S ribosomal protein L 77.6 1 3.4E-05 28.9 1.6 24 71-94 18-42 (57)
42 3bbo_3 Ribosomal protein L33; 77.6 1.1 3.7E-05 29.3 1.8 14 85-99 49-62 (66)
43 3ir9_A Peptide chain release f 77.2 2.6 8.7E-05 31.3 4.0 32 67-100 75-116 (166)
44 1k81_A EIF-2-beta, probable tr 76.3 0.64 2.2E-05 26.7 0.4 24 58-81 9-32 (36)
45 2dok_A Telomerase-binding prot 75.2 1.8 6.1E-05 32.0 2.7 27 33-59 151-177 (186)
46 3u31_A SIR2A, transcriptional 74.5 2 6.7E-05 34.7 3.0 28 68-98 152-192 (290)
47 1gh9_A 8.3 kDa protein (gene M 73.3 1.2 4.1E-05 29.3 1.2 33 69-103 3-38 (71)
48 3f2b_A DNA-directed DNA polyme 73.0 1.8 6.1E-05 40.9 2.6 28 70-99 502-539 (1041)
49 2zjr_Z 50S ribosomal protein L 73.0 1.7 5.6E-05 27.7 1.7 21 71-93 31-51 (60)
50 3v2d_6 50S ribosomal protein L 73.0 1.2 4.2E-05 27.9 1.1 31 68-99 8-50 (54)
51 3axs_A Probable N(2),N(2)-dime 72.9 1.9 6.6E-05 35.9 2.6 28 67-94 241-272 (392)
52 3glr_A NAD-dependent deacetyla 72.8 2.3 7.9E-05 34.3 3.0 27 68-94 137-172 (285)
53 3j21_e 50S ribosomal protein L 72.6 1.4 4.7E-05 28.7 1.3 24 71-94 18-42 (62)
54 3iz5_l 60S ribosomal protein L 72.0 1.6 5.3E-05 30.5 1.5 25 70-94 16-40 (94)
55 3lpe_B DNA-directed RNA polyme 71.4 2.1 7.1E-05 27.3 1.9 21 71-94 2-22 (59)
56 1h7b_A Anaerobic ribonucleotid 71.4 0.92 3.1E-05 40.3 0.3 25 70-94 540-567 (605)
57 4a18_A RPL37, ribosomal protei 71.1 1.5 5.1E-05 30.6 1.3 25 70-94 16-40 (94)
58 1pft_A TFIIB, PFTFIIBN; N-term 70.9 0.96 3.3E-05 26.9 0.2 9 85-93 24-32 (50)
59 3r8s_1 50S ribosomal protein L 70.3 1.7 6E-05 26.7 1.3 31 68-99 5-47 (50)
60 2zkr_2 60S ribosomal protein L 69.9 2 6.7E-05 30.2 1.7 25 70-94 16-40 (97)
61 1ffk_W Ribosomal protein L37AE 67.3 3.5 0.00012 27.3 2.4 18 85-103 27-44 (73)
62 3j21_i 50S ribosomal protein L 67.3 2.4 8.1E-05 28.9 1.6 17 85-102 35-51 (83)
63 2zjr_1 50S ribosomal protein L 67.0 2.8 9.7E-05 26.2 1.8 31 68-99 9-51 (55)
64 3v2d_5 50S ribosomal protein L 66.7 2.6 8.9E-05 26.8 1.6 22 70-93 30-51 (60)
65 2kwq_A Protein MCM10 homolog; 65.7 3.6 0.00012 28.4 2.3 37 64-103 43-82 (92)
66 1z60_A TFIIH basal transcripti 65.3 2.2 7.4E-05 27.2 1.0 23 72-94 17-39 (59)
67 3ga8_A HTH-type transcriptiona 65.1 5.6 0.00019 25.6 3.1 24 86-110 3-28 (78)
68 1s5p_A NAD-dependent deacetyla 63.6 3.3 0.00011 31.9 2.0 27 68-94 111-143 (235)
69 1twf_I B12.6, DNA-directed RNA 63.5 2.5 8.4E-05 29.9 1.2 10 85-94 4-13 (122)
70 3iz5_m 60S ribosomal protein L 63.0 2.9 0.0001 28.9 1.4 17 85-102 36-52 (92)
71 2fiy_A Protein FDHE homolog; F 62.8 4.3 0.00015 33.1 2.7 12 85-96 182-193 (309)
72 1l8d_A DNA double-strand break 62.2 1.9 6.6E-05 29.2 0.4 10 85-94 47-56 (112)
73 1j8f_A SIRT2, sirtuin 2, isofo 61.6 5.5 0.00019 32.4 3.1 27 68-94 157-194 (323)
74 1qxf_A GR2, 30S ribosomal prot 61.6 4.5 0.00015 26.5 2.0 25 70-94 7-35 (66)
75 1o4w_A PIN (PILT N-terminus) d 61.3 8.1 0.00028 27.0 3.6 30 33-62 110-139 (147)
76 2k2d_A Ring finger and CHY zin 60.8 5.8 0.0002 26.3 2.6 26 70-95 37-65 (79)
77 3h0g_I DNA-directed RNA polyme 60.0 2.7 9.3E-05 29.3 0.9 10 85-94 4-13 (113)
78 3izc_m 60S ribosomal protein R 60.0 3.5 0.00012 28.6 1.4 17 85-102 36-52 (92)
79 3bvo_A CO-chaperone protein HS 59.4 4.2 0.00014 31.1 1.9 23 71-93 11-35 (207)
80 3cc2_Z 50S ribosomal protein L 58.7 2.9 9.8E-05 30.2 0.8 17 85-102 60-76 (116)
81 1dl6_A Transcription factor II 58.4 2.3 7.7E-05 26.6 0.2 9 85-93 30-38 (58)
82 3m7n_A Putative uncharacterize 58.4 2 6.9E-05 31.9 -0.0 36 65-101 135-171 (179)
83 3qt1_I DNA-directed RNA polyme 57.6 3.1 0.00011 30.1 0.8 10 85-94 24-33 (133)
84 3j20_W 30S ribosomal protein S 57.3 5.6 0.00019 25.8 1.9 26 69-94 14-43 (63)
85 1nkw_1 50S ribosomal protein L 55.5 5.8 0.0002 26.9 1.9 31 68-99 36-78 (82)
86 4a17_Y RPL37A, 60S ribosomal p 53.6 3.8 0.00013 29.0 0.7 17 85-102 36-52 (103)
87 3jyw_9 60S ribosomal protein L 51.8 2.3 7.8E-05 28.2 -0.6 16 85-101 26-41 (72)
88 3u50_C Telomerase-associated p 51.1 7.1 0.00024 29.3 2.0 43 68-110 40-88 (172)
89 3riy_A NAD-dependent deacetyla 51.0 9.2 0.00031 30.2 2.7 14 68-81 132-145 (273)
90 3u5c_b RP61, YS20, 40S ribosom 50.8 7.8 0.00027 26.3 1.9 26 69-94 33-62 (82)
91 1nee_A EIF-2-beta, probable tr 50.3 5.2 0.00018 29.2 1.1 38 43-80 90-133 (138)
92 2fiy_A Protein FDHE homolog; F 49.2 7.6 0.00026 31.6 2.0 24 70-94 208-231 (309)
93 2xzm_6 RPS27E; ribosome, trans 48.8 8.2 0.00028 26.2 1.8 26 69-94 31-60 (81)
94 3e20_C Eukaryotic peptide chai 48.7 4.4 0.00015 34.4 0.5 29 66-94 333-372 (441)
95 2hjh_A NAD-dependent histone d 48.0 9.4 0.00032 31.3 2.4 26 67-92 158-192 (354)
96 3iz6_X 40S ribosomal protein S 48.0 8.9 0.00031 26.2 1.9 25 70-94 36-64 (86)
97 2ayj_A 50S ribosomal protein L 47.8 11 0.00039 23.8 2.2 28 69-98 18-45 (56)
98 1vd4_A Transcription initiatio 47.7 5.8 0.0002 23.3 0.8 25 70-94 14-48 (62)
99 2akl_A PHNA-like protein PA012 46.3 5.6 0.00019 29.4 0.7 24 71-94 28-53 (138)
100 3fac_A Putative uncharacterize 46.2 5.7 0.00019 27.1 0.7 11 84-94 66-76 (118)
101 3vth_A Hydrogenase maturation 46.1 3.8 0.00013 37.3 -0.3 23 72-94 163-192 (761)
102 1vq8_Z 50S ribosomal protein L 45.9 8.7 0.0003 25.7 1.5 8 71-78 28-35 (83)
103 2epq_A POZ-, at HOOK-, and zin 45.2 8.2 0.00028 20.6 1.1 11 71-81 11-21 (45)
104 1dxg_A Desulforedoxin; non-hem 42.8 18 0.0006 20.3 2.3 20 86-110 7-26 (36)
105 3o9x_A Uncharacterized HTH-typ 42.3 19 0.00063 24.3 2.8 24 86-110 3-28 (133)
106 1qyp_A RNA polymerase II; tran 42.2 15 0.0005 22.2 2.1 19 85-104 15-33 (57)
107 4esj_A Type-2 restriction enzy 41.9 9.4 0.00032 30.8 1.4 14 86-100 35-48 (257)
108 2ftc_P Mitochondrial ribosomal 41.9 8.8 0.0003 23.6 1.0 31 68-99 9-49 (52)
109 3flo_B DNA polymerase alpha ca 40.7 13 0.00043 28.7 1.9 36 59-94 11-58 (206)
110 3j21_j 50S ribosomal protein L 40.4 11 0.00036 26.1 1.3 18 85-103 8-25 (94)
111 1weo_A Cellulose synthase, cat 40.1 3.9 0.00013 28.4 -0.9 26 72-99 45-70 (93)
112 2owo_A DNA ligase; protein-DNA 40.1 17 0.00057 32.7 2.9 49 48-99 364-417 (671)
113 2d74_B Translation initiation 39.5 5.8 0.0002 29.4 -0.2 8 87-94 127-134 (148)
114 2e9h_A EIF-5, eukaryotic trans 38.9 11 0.00039 28.1 1.4 25 57-81 111-137 (157)
115 2k1p_A Zinc finger RAN-binding 38.6 19 0.00065 19.9 2.0 22 72-94 8-29 (33)
116 2hf1_A Tetraacyldisaccharide-1 38.5 9.1 0.00031 24.7 0.7 25 70-94 8-35 (68)
117 1ltl_A DNA replication initiat 37.5 33 0.0011 26.8 3.9 30 65-94 129-165 (279)
118 1vq8_3 50S ribosomal protein L 37.2 10 0.00036 26.2 0.8 18 85-103 8-25 (92)
119 1x6m_A GFA, glutathione-depend 35.7 11 0.00038 28.2 0.9 11 84-94 97-107 (196)
120 4iao_A NAD-dependent histone d 35.6 15 0.00053 32.0 1.9 25 68-92 297-330 (492)
121 3gmt_A Adenylate kinase; ssgci 35.3 18 0.00063 27.9 2.1 29 70-99 131-164 (230)
122 2kn0_A FN14; tweak, TNF recept 35.1 23 0.00078 23.0 2.2 21 71-94 19-39 (66)
123 3p2a_A Thioredoxin 2, putative 34.9 21 0.00073 23.8 2.2 28 70-98 5-37 (148)
124 2lk0_A RNA-binding protein 5; 34.4 23 0.00078 19.4 1.8 22 72-94 7-28 (32)
125 4a18_C 60S ribosomal protein L 34.0 12 0.00043 26.5 0.8 18 85-103 9-26 (109)
126 2js4_A UPF0434 protein BB2007; 33.8 9.2 0.00031 24.8 0.1 8 86-93 27-34 (70)
127 1tfi_A Transcriptional elongat 33.7 14 0.00047 22.3 0.9 10 85-94 9-18 (50)
128 2jr6_A UPF0434 protein NMA0874 33.4 9.8 0.00033 24.5 0.2 8 86-93 27-34 (68)
129 1rqg_A Methionyl-tRNA syntheta 33.1 44 0.0015 29.7 4.4 52 36-93 92-148 (722)
130 3qqc_A DNA-directed RNA polyme 32.8 42 0.0014 28.5 4.1 35 68-102 3-40 (436)
131 2jny_A Uncharacterized BCR; st 32.3 10 0.00034 24.5 0.1 8 86-93 29-36 (67)
132 1r8o_B STI, kunitz trypsin inh 32.3 42 0.0014 21.7 3.2 23 85-110 31-53 (71)
133 4g9i_A Hydrogenase maturation 31.9 8.1 0.00028 35.1 -0.5 23 72-94 158-187 (772)
134 3ttc_A HYPF, transcriptional r 31.6 8.2 0.00028 34.6 -0.5 23 72-94 69-98 (657)
135 2nn6_I 3'-5' exoribonuclease C 31.3 12 0.00041 28.5 0.4 32 71-103 170-202 (209)
136 2g2k_A EIF-5, eukaryotic trans 31.0 14 0.00049 27.9 0.8 40 42-81 83-130 (170)
137 4bbr_M Transcription initiatio 30.5 13 0.00044 30.3 0.5 25 70-94 21-51 (345)
138 2x5c_A Hypothetical protein OR 30.2 69 0.0024 22.7 4.2 22 86-110 53-74 (131)
139 1k3x_A Endonuclease VIII; hydr 30.0 23 0.00079 27.7 1.9 16 85-102 234-249 (262)
140 3sr0_A Adenylate kinase; phosp 29.9 25 0.00087 26.0 2.0 28 69-99 123-150 (206)
141 2xzf_A Formamidopyrimidine-DNA 29.9 23 0.00079 27.8 1.9 16 85-102 242-257 (271)
142 1k82_A Formamidopyrimidine-DNA 29.9 23 0.00079 27.8 1.9 16 85-102 240-255 (268)
143 3u6p_A Formamidopyrimidine-DNA 29.7 23 0.0008 27.9 1.9 16 85-102 245-260 (273)
144 1vfy_A Phosphatidylinositol-3- 29.4 25 0.00084 22.2 1.6 22 72-93 13-35 (73)
145 3cw2_K Translation initiation 29.1 4.9 0.00017 29.4 -2.0 23 72-94 105-133 (139)
146 3h7h_A Transcription elongatio 28.7 14 0.00049 26.5 0.4 25 69-93 15-41 (120)
147 1vdd_A Recombination protein R 28.7 10 0.00035 30.1 -0.4 29 63-94 47-75 (228)
148 2k5c_A Uncharacterized protein 28.6 16 0.00053 25.2 0.6 8 87-94 10-17 (95)
149 1g2r_A Hypothetical cytosolic 28.4 56 0.0019 22.2 3.5 38 71-122 12-49 (100)
150 1wff_A Riken cDNA 2810002D23 p 28.4 21 0.00072 24.2 1.2 27 67-94 22-48 (85)
151 2ko5_A Ring finger protein Z; 28.2 9.2 0.00032 26.8 -0.6 30 71-102 48-77 (99)
152 1joc_A EEA1, early endosomal a 28.0 26 0.00088 24.6 1.7 23 71-93 70-93 (125)
153 2yw8_A RUN and FYVE domain-con 27.7 27 0.00092 22.5 1.6 22 72-93 21-43 (82)
154 3h99_A Methionyl-tRNA syntheta 27.7 50 0.0017 28.0 3.7 27 66-92 135-162 (560)
155 2pk7_A Uncharacterized protein 27.5 16 0.00054 23.6 0.4 8 86-93 27-34 (69)
156 1x6e_A Zinc finger protein 24; 27.3 36 0.0012 19.8 2.0 25 70-94 14-51 (72)
157 3o8s_A Nudix hydrolase, ADP-ri 27.1 48 0.0016 24.0 3.1 40 84-128 57-96 (206)
158 2qjt_B Nicotinamide-nucleotide 27.0 14 0.00049 28.7 0.2 29 99-128 210-238 (352)
159 2epr_A POZ-, at HOOK-, and zin 26.9 37 0.0013 18.2 1.9 12 70-81 12-23 (48)
160 3vk6_A E3 ubiquitin-protein li 26.9 12 0.00042 26.2 -0.2 32 71-104 23-54 (101)
161 1dvp_A HRS, hepatocyte growth 26.9 27 0.00091 26.3 1.7 23 71-93 162-185 (220)
162 3t7l_A Zinc finger FYVE domain 26.6 29 0.001 22.9 1.7 22 72-93 22-44 (90)
163 1lv3_A Hypothetical protein YA 26.5 34 0.0012 22.3 1.9 10 71-80 10-19 (68)
164 2cr8_A MDM4 protein; ZF-ranbp 26.2 34 0.0011 21.4 1.8 22 71-93 12-33 (53)
165 2c6a_A Ubiquitin-protein ligas 26.0 32 0.0011 20.9 1.6 21 72-93 15-35 (46)
166 1x5w_A Zinc finger protein 64, 26.0 40 0.0014 19.4 2.1 11 71-81 10-20 (70)
167 3k7a_M Transcription initiatio 25.3 23 0.00077 28.6 1.1 24 71-94 22-51 (345)
168 3zyq_A Hepatocyte growth facto 25.3 29 0.00099 26.4 1.6 51 43-93 131-188 (226)
169 3k1f_M Transcription initiatio 25.3 18 0.00061 28.1 0.4 25 70-94 21-51 (197)
170 2f9y_B Acetyl-coenzyme A carbo 25.0 22 0.00074 28.6 0.9 26 68-94 23-52 (304)
171 4gop_C Putative uncharacterize 24.7 36 0.0012 28.1 2.2 43 68-110 306-357 (444)
172 2a6h_D DNA-directed RNA polyme 24.6 20 0.00068 35.4 0.7 29 71-100 56-85 (1524)
173 2ct7_A Ring finger protein 31; 24.5 31 0.0011 22.3 1.5 6 73-78 28-33 (86)
174 1z2q_A LM5-1; membrane protein 24.3 34 0.0012 22.1 1.7 22 71-92 22-44 (84)
175 4gzn_C ZFP-57, zinc finger pro 24.2 41 0.0014 20.1 1.9 11 71-81 5-15 (60)
176 1ee8_A MUTM (FPG) protein; bet 24.2 25 0.00084 27.7 1.1 16 85-102 235-250 (266)
177 1rik_A E6APC1 peptide; E6-bind 23.8 32 0.0011 15.7 1.1 11 71-81 3-13 (29)
178 1wii_A Hypothetical UPF0222 pr 23.7 30 0.001 23.2 1.3 20 85-107 23-42 (85)
179 1x4s_A Protein FON, zinc finge 23.7 27 0.00091 22.2 1.0 23 72-94 13-35 (59)
180 2m0d_A Zinc finger and BTB dom 23.5 32 0.0011 15.7 1.1 12 71-82 4-15 (30)
181 1nj3_A NPL4; NZF domain, rubre 23.5 64 0.0022 17.0 2.4 23 71-94 7-29 (31)
182 3v2d_Y 50S ribosomal protein L 23.2 68 0.0023 22.4 3.1 27 85-114 73-100 (110)
183 1y02_A CARP2, FYVE-ring finger 23.0 33 0.0011 24.2 1.5 23 71-93 20-43 (120)
184 4glx_A DNA ligase; inhibitor, 23.0 44 0.0015 29.5 2.5 46 48-94 364-414 (586)
185 3vdp_A Recombination protein R 22.4 15 0.0005 28.8 -0.6 29 63-94 61-89 (212)
186 1x4u_A Zinc finger, FYVE domai 22.2 42 0.0014 21.6 1.8 10 72-81 16-25 (84)
187 2i5o_A DNA polymerase ETA; zin 21.7 30 0.001 20.1 0.8 10 85-94 9-18 (39)
188 3mkr_B Coatomer subunit alpha; 21.7 39 0.0013 27.8 1.8 24 71-94 279-303 (320)
189 2kvh_A Zinc finger and BTB dom 21.5 38 0.0013 15.4 1.1 11 71-81 4-14 (27)
190 2m0e_A Zinc finger and BTB dom 21.4 33 0.0011 15.5 0.8 8 87-94 4-11 (29)
191 3r8s_0 50S ribosomal protein L 21.3 26 0.0009 21.6 0.6 14 84-98 26-39 (56)
192 3b08_B Ranbp-type and C3HC4-ty 21.3 57 0.0019 20.9 2.2 22 72-94 10-31 (64)
193 2ftc_N Mitochondrial ribosomal 21.2 84 0.0029 21.3 3.2 23 85-110 63-85 (96)
194 2ebq_A Nuclear pore complex pr 20.9 52 0.0018 19.8 1.9 22 72-94 13-34 (47)
195 2c2l_A CHIP, carboxy terminus 20.8 22 0.00075 26.5 0.1 9 86-94 244-252 (281)
196 1l1o_C Replication protein A 7 20.7 41 0.0014 24.7 1.6 43 68-110 41-92 (181)
197 4gud_A Imidazole glycerol phos 20.4 26 0.00088 25.3 0.4 13 44-56 18-30 (211)
198 1wfk_A Zinc finger, FYVE domai 20.4 45 0.0015 22.0 1.6 8 86-93 34-41 (88)
199 3mv2_A Coatomer subunit alpha; 20.2 43 0.0015 27.7 1.8 23 71-93 288-311 (325)
200 2a20_A Regulating synaptic mem 20.1 20 0.00069 23.1 -0.2 10 85-94 33-42 (62)
201 2m0f_A Zinc finger and BTB dom 20.0 41 0.0014 15.1 1.1 11 71-81 3-13 (29)
No 1
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=99.97 E-value=1.8e-32 Score=189.11 Aligned_cols=72 Identities=35% Similarity=0.804 Sum_probs=67.9
Q ss_pred cCCCCcceeeeeEEEEccCccccccccCccccCCCCCCCceeEEEEEeCCCceEEeec--CCc-cccCceeecCCC
Q 032998 57 APGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNGGTLRKVAVTVGENGIVLASR--RPR-ITLRGTKVSISL 129 (129)
Q Consensus 57 s~~g~~I~~~k~W~~rC~~C~k~~~~~~~~fCp~CG~~~tL~rv~v~v~~~G~~~~~~--~~~-~n~RG~~ySlP~ 129 (129)
+++|++|+++|+|+|||+|||+++.+|++.|||+||++ ||+||+++||+||++++|. +++ ||+||++||||+
T Consensus 2 s~~G~~Ir~~k~~iLrC~aCf~~t~~~~k~FCp~CGn~-TL~Rvsvsvd~~G~~~~hl~~n~~~~n~RG~~ySlPk 76 (79)
T 2con_A 2 SSGSSGVREARSYILRCHGCFKTTSDMNRVFCGHCGNK-TLKKVSVTINDDGTLHMHFSRNPKVLNPRGLRYSSGP 76 (79)
T ss_dssp CCCCCCCCCCCCEEEECSSSCCEESCSSCCSCSSSCCS-CCEEEECBCCSSCCCBCCCCCCCCCCCCCCCCCCCCC
T ss_pred CCCceEeeeeeeeeeEecccceECCCcccccccccCcc-cceEEEEEECCCCcEEEeccCCccccccCCCCccCCC
Confidence 67999999999999999999999999999999999998 9999999999999987664 578 999999999996
No 2
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=99.73 E-value=8.7e-19 Score=131.10 Aligned_cols=67 Identities=24% Similarity=0.521 Sum_probs=60.1
Q ss_pred CceeeEeechHHHHHHHHHhCceeecCCCCcceeeeeEEEEccCccccccccC-ccccCCCCCCCceeEEE
Q 032998 32 ESTVACITGDYAMQNVILQMGLRLLAPGGMQIRQLHRWILKCHACYTITAEIG-RIFCPKCGNGGTLRKVA 101 (129)
Q Consensus 32 ~~~va~~TdDyamQNVl~~lGL~~~s~~g~~I~~~k~W~~rC~~C~k~~~~~~-~~fCp~CG~~~tL~rv~ 101 (129)
+.++.++|+||++||||.++||+++++. .+|++++.|.|+|.+||+.|.... ..|||.||++ ++|++
T Consensus 95 ~l~~~lvT~D~~l~~vA~~~Gv~v~~~~-~~i~~~~~~~y~C~~Cg~~~~~~~~~~~Cp~CG~~--~~~~~ 162 (165)
T 2lcq_A 95 ELKGEIFSDDYNVQNIASLLGLRFRTLK-RGIKKVIKWRYVCIGCGRKFSTLPPGGVCPDCGSK--VKLIP 162 (165)
T ss_dssp HHTCCEECCCHHHHHHHHHTTCCEECCS-CCCSSCCCCCEEESSSCCEESSCCGGGBCTTTCCB--EEECC
T ss_pred HhCCeEEcCcHHHHHHHHHCCCeEEchh-hhccccccEEEECCCCCCcccCCCCCCcCCCCCCc--ceeCC
Confidence 4567999999999999999999999998 889999999999999999997543 5799999998 77754
No 3
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=96.94 E-value=0.0004 Score=51.20 Aligned_cols=43 Identities=23% Similarity=0.334 Sum_probs=32.0
Q ss_pred eeeeEEEEccCccccccccCccccCCCCCCCceeEEEEEeCCCceE
Q 032998 65 QLHRWILKCHACYTITAEIGRIFCPKCGNGGTLRKVAVTVGENGIV 110 (129)
Q Consensus 65 ~~k~W~~rC~~C~k~~~~~~~~fCp~CG~~~tL~rv~v~v~~~G~~ 110 (129)
+-+-...||..|++++.. .+.+||.||+. .+.-+.++ ...|++
T Consensus 42 ~grL~~~rC~~CG~~~~P-Pr~~Cp~C~s~-~~~~ve~s-~G~GtV 84 (145)
T 3irb_A 42 QNKIIGSKCSKCGRIFVP-ARSYCEHCFVK-IENYVEIN-KDEAYV 84 (145)
T ss_dssp TTCCEEEECTTTCCEEES-CCSEETTTTEE-CCEEEECC-GGGCEE
T ss_pred cCeEEEEEeCCCCcEEcC-chhhCcCCCCC-ceeeeeec-CCceEE
Confidence 335678899999998875 47999999998 77766541 135776
No 4
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=96.65 E-value=0.00088 Score=49.59 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=31.6
Q ss_pred eeEEEEccCccccccccCccccCCCCCCCceeEEEEEeC-CCceE
Q 032998 67 HRWILKCHACYTITAEIGRIFCPKCGNGGTLRKVAVTVG-ENGIV 110 (129)
Q Consensus 67 k~W~~rC~~C~k~~~~~~~~fCp~CG~~~tL~rv~v~v~-~~G~~ 110 (129)
+-...||..|++++.. .+.+||.||+. .+.-+.+ . ..|++
T Consensus 44 ~L~~~rC~~CG~~~fP-Pr~~Cp~C~s~-~~e~v~l--s~g~GtV 84 (145)
T 2gnr_A 44 KIIGSKCSKCGRIFVP-ARSYCEHCFVK-IENYVEI--NKDEAYV 84 (145)
T ss_dssp CCEEEECTTTCCEEES-CCSEETTTTEE-CCEEEEC--CGGGCEE
T ss_pred EEEEEEECCCCcEEeC-CCCCCCCCCCC-ccEEEEc--cCCcEEE
Confidence 4667899999998765 47899999998 7776664 5 56776
No 5
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=96.32 E-value=0.0032 Score=44.52 Aligned_cols=31 Identities=19% Similarity=0.484 Sum_probs=23.0
Q ss_pred eeEEEEccCccccccccC-cc-ccCCCCCCCcee
Q 032998 67 HRWILKCHACYTITAEIG-RI-FCPKCGNGGTLR 98 (129)
Q Consensus 67 k~W~~rC~~C~k~~~~~~-~~-fCp~CG~~~tL~ 98 (129)
..-.++|..|++.+.... .. .||.||++ .++
T Consensus 70 ~p~~~~C~~CG~~~e~~~~~~~~CP~Cgs~-~~~ 102 (119)
T 2kdx_A 70 EKVELECKDCSHVFKPNALDYGVCEKCHSK-NVI 102 (119)
T ss_dssp ECCEEECSSSSCEECSCCSTTCCCSSSSSC-CCE
T ss_pred ccceEEcCCCCCEEeCCCCCCCcCccccCC-CcE
Confidence 345799999999876433 34 69999998 444
No 6
>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}
Probab=95.34 E-value=0.01 Score=44.08 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=26.3
Q ss_pred CceeeEeechHHHHHHHHHhCceeecCCC
Q 032998 32 ESTVACITGDYAMQNVILQMGLRLLAPGG 60 (129)
Q Consensus 32 ~~~va~~TdDyamQNVl~~lGL~~~s~~g 60 (129)
+.++.++|+||.+++||..+|++++.+..
T Consensus 104 ~~~a~lvTnD~~l~kvA~~~GI~V~~l~~ 132 (142)
T 3i8o_A 104 ETNSILLTSDWIQYNLAKAQGIEAYFLEA 132 (142)
T ss_dssp HTTCEEEESCHHHHHHHHHTTCCEEECCC
T ss_pred HhCCEEEcCCHHHHHHHHHcCCEEEEecc
Confidence 46789999999999999999999988764
No 7
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=95.25 E-value=0.008 Score=39.00 Aligned_cols=29 Identities=34% Similarity=0.686 Sum_probs=21.9
Q ss_pred EEEccCccccccccCccccCCCCCCCceeEEEE
Q 032998 70 ILKCHACYTITAEIGRIFCPKCGNGGTLRKVAV 102 (129)
Q Consensus 70 ~~rC~~C~k~~~~~~~~fCp~CG~~~tL~rv~v 102 (129)
+.+|..|+..+- +..||.||.+ |..-.+.
T Consensus 6 mr~C~~CgvYTL---k~~CP~CG~~-T~~~hPa 34 (60)
T 2apo_B 6 MKKCPKCGLYTL---KEICPKCGEK-TVIPKPP 34 (60)
T ss_dssp CEECTTTCCEES---SSBCSSSCSB-CBCCCCC
T ss_pred ceeCCCCCCEec---cccCcCCCCc-CCCCCCC
Confidence 467999998765 5889999998 6544443
No 8
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=94.89 E-value=0.021 Score=41.76 Aligned_cols=31 Identities=26% Similarity=0.568 Sum_probs=22.2
Q ss_pred eeEEEEccCccccccccC----------------------ccccCCCCCCCcee
Q 032998 67 HRWILKCHACYTITAEIG----------------------RIFCPKCGNGGTLR 98 (129)
Q Consensus 67 k~W~~rC~~C~k~~~~~~----------------------~~fCp~CG~~~tL~ 98 (129)
..=+.+|..|+..+.... ..-||.||++ .+.
T Consensus 67 ~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~-~~~ 119 (139)
T 3a43_A 67 EEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSH-DFE 119 (139)
T ss_dssp ECCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCC-CEE
T ss_pred cCCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCC-ccE
Confidence 344689999998875322 3559999998 443
No 9
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=94.78 E-value=0.014 Score=43.99 Aligned_cols=26 Identities=23% Similarity=0.660 Sum_probs=20.1
Q ss_pred eeEEEEccCccccccccCccccCCCCCC
Q 032998 67 HRWILKCHACYTITAEIGRIFCPKCGNG 94 (129)
Q Consensus 67 k~W~~rC~~C~k~~~~~~~~fCp~CG~~ 94 (129)
..| +|.-||.++....-..||.||.+
T Consensus 137 ~~~--~C~~CG~i~~~~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 137 KVY--ICPICGYTAVDEAPEYCPVCGAP 162 (170)
T ss_dssp CEE--ECTTTCCEEESCCCSBCTTTCCB
T ss_pred Cee--EeCCCCCeeCCCCCCCCCCCCCC
Confidence 455 59999998865344689999986
No 10
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=94.74 E-value=0.012 Score=36.09 Aligned_cols=24 Identities=25% Similarity=0.602 Sum_probs=18.2
Q ss_pred EEccCccccccc----------cC-ccccCCCCCC
Q 032998 71 LKCHACYTITAE----------IG-RIFCPKCGNG 94 (129)
Q Consensus 71 ~rC~~C~k~~~~----------~~-~~fCp~CG~~ 94 (129)
++|..|+.+|.. .+ .-.||.||.+
T Consensus 5 y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 5 YVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp EEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred EECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCc
Confidence 599999999963 11 1279999986
No 11
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=94.69 E-value=0.014 Score=37.83 Aligned_cols=27 Identities=37% Similarity=0.642 Sum_probs=20.9
Q ss_pred EEEccCccccccccCccccCCCCCCCceeEE
Q 032998 70 ILKCHACYTITAEIGRIFCPKCGNGGTLRKV 100 (129)
Q Consensus 70 ~~rC~~C~k~~~~~~~~fCp~CG~~~tL~rv 100 (129)
+.+|..|+..+- +..||.||.+ |..-.
T Consensus 5 mr~C~~Cg~YTL---k~~CP~CG~~-t~~ah 31 (60)
T 2aus_D 5 IRKCPKCGRYTL---KETCPVCGEK-TKVAH 31 (60)
T ss_dssp CEECTTTCCEES---SSBCTTTCSB-CEESS
T ss_pred ceECCCCCCEEc---cccCcCCCCc-cCCCC
Confidence 467999998765 5889999998 65433
No 12
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=94.68 E-value=0.016 Score=38.39 Aligned_cols=32 Identities=22% Similarity=0.456 Sum_probs=24.4
Q ss_pred eeEEEEccCccccccc--cCccccCCCCCCCceeE
Q 032998 67 HRWILKCHACYTITAE--IGRIFCPKCGNGGTLRK 99 (129)
Q Consensus 67 k~W~~rC~~C~k~~~~--~~~~fCp~CG~~~tL~r 99 (129)
....|.|..|+..+.. .....||.||++ .|.|
T Consensus 25 ~~v~Y~C~~CG~~~e~~~~d~irCp~CG~R-ILyK 58 (70)
T 1twf_L 25 ATLKYICAECSSKLSLSRTDAVRCKDCGHR-ILLK 58 (70)
T ss_dssp CCCCEECSSSCCEECCCTTSTTCCSSSCCC-CCBC
T ss_pred ceEEEECCCCCCcceeCCCCCccCCCCCce-EeEe
Confidence 4678999999987443 345789999997 5654
No 13
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}
Probab=94.07 E-value=0.02 Score=41.97 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=25.0
Q ss_pred CceeeEeechHHHHHHHHHhCceeecCC
Q 032998 32 ESTVACITGDYAMQNVILQMGLRLLAPG 59 (129)
Q Consensus 32 ~~~va~~TdDyamQNVl~~lGL~~~s~~ 59 (129)
+.++.++|.||.++++|..+|++++.+.
T Consensus 96 ~~~~~lvTnD~~L~kvA~~~GI~Vl~l~ 123 (134)
T 3ix7_A 96 DLEAALVTNDHALLQMARIYGVKALSIQ 123 (134)
T ss_dssp HTTCEEEESCHHHHHHHHHTTCCEEEHH
T ss_pred HhCCEEEeCCHHHHHHHHHCCCeEEehH
Confidence 4678999999999999999999998653
No 14
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=93.80 E-value=0.022 Score=35.52 Aligned_cols=31 Identities=23% Similarity=0.697 Sum_probs=22.1
Q ss_pred EEEccCccccccc-----cCccccCCCCCCCceeEEE
Q 032998 70 ILKCHACYTITAE-----IGRIFCPKCGNGGTLRKVA 101 (129)
Q Consensus 70 ~~rC~~C~k~~~~-----~~~~fCp~CG~~~tL~rv~ 101 (129)
+|+|-.|++.+.. ++..-||.||.+ -+.+|.
T Consensus 3 iY~C~rCg~~fs~~el~~lP~IrCpyCGyr-ii~KvR 38 (48)
T 4ayb_P 3 VYRCGKCWKTFTDEQLKVLPGVRCPYCGYK-IIFMVR 38 (48)
T ss_dssp --CCCCTTTTCCCCCSCCCSSSCCTTTCCS-CEECCC
T ss_pred EEEeeccCCCccHHHHhhCCCcccCccCcE-EEEEec
Confidence 5899999998864 334679999998 666543
No 15
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=93.18 E-value=0.069 Score=40.48 Aligned_cols=26 Identities=19% Similarity=0.520 Sum_probs=19.8
Q ss_pred EEEEccCccccccc-cCccccCCCCCC
Q 032998 69 WILKCHACYTITAE-IGRIFCPKCGNG 94 (129)
Q Consensus 69 W~~rC~~C~k~~~~-~~~~fCp~CG~~ 94 (129)
=+++|.-||.++.. .....||.||.+
T Consensus 154 ~~~~C~~CG~~~~g~~~p~~CP~C~~~ 180 (191)
T 1lko_A 154 TKWRCRNCGYVHEGTGAPELCPACAHP 180 (191)
T ss_dssp EEEEETTTCCEEEEEECCSBCTTTCCB
T ss_pred ceEEECCCCCEeeCCCCCCCCCCCcCC
Confidence 36789999999853 123589999997
No 16
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=93.16 E-value=0.045 Score=42.13 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=20.1
Q ss_pred EEEccCccccccccCccccCCCCCC
Q 032998 70 ILKCHACYTITAEIGRIFCPKCGNG 94 (129)
Q Consensus 70 ~~rC~~C~k~~~~~~~~fCp~CG~~ 94 (129)
+++|.-||.++.......||.||.+
T Consensus 171 ~~~C~~CG~i~~g~~p~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICGYIHKGEDFEKCPICFRP 195 (202)
T ss_dssp EEECSSSCCEEESSCCSBCTTTCCB
T ss_pred EEEECCCCCEEcCcCCCCCCCCCCC
Confidence 5789999999864334689999986
No 17
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=92.44 E-value=0.057 Score=34.11 Aligned_cols=25 Identities=32% Similarity=0.659 Sum_probs=18.6
Q ss_pred EEEccCcccccccc-----------------C-ccccCCCCCC
Q 032998 70 ILKCHACYTITAEI-----------------G-RIFCPKCGNG 94 (129)
Q Consensus 70 ~~rC~~C~k~~~~~-----------------~-~~fCp~CG~~ 94 (129)
+++|..|+-+|... . .-.||.||.+
T Consensus 3 ~y~C~vCGyvYd~~~Gdp~~gi~pGt~fe~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 3 KYTCTVCGYIYDPEDGDPDDGVNPGTDFKDIPDDWVCPLCGVG 45 (54)
T ss_dssp CEEETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred ceECCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCcCCCCc
Confidence 36999999998642 1 1269999986
No 18
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=92.11 E-value=0.079 Score=33.04 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=18.6
Q ss_pred EEEccCccccccccC------------------ccccCCCCCC
Q 032998 70 ILKCHACYTITAEIG------------------RIFCPKCGNG 94 (129)
Q Consensus 70 ~~rC~~C~k~~~~~~------------------~~fCp~CG~~ 94 (129)
+++|..|+-+|.... .-.||.||.+
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 3 IYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGAS 45 (52)
T ss_dssp CEECSSSCCCCCTTTCCTTTTCCSSCCTTSSCTTCCCSSSCCC
T ss_pred cEEeCCCCeEEcCCcCCcccCcCCCCchHHCCCCCcCCCCCCc
Confidence 378999999986321 1269999986
No 19
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=91.26 E-value=0.12 Score=35.29 Aligned_cols=27 Identities=22% Similarity=0.582 Sum_probs=21.5
Q ss_pred EEEccCccccccccCccccCCCCCCCceeEE
Q 032998 70 ILKCHACYTITAEIGRIFCPKCGNGGTLRKV 100 (129)
Q Consensus 70 ~~rC~~C~k~~~~~~~~fCp~CG~~~tL~rv 100 (129)
.+.|..|++-+... -|||.||.+ |.+.
T Consensus 18 ~~~C~~C~~~~~~~--afCPeCgq~--Le~l 44 (81)
T 2jrp_A 18 TAHCETCAKDFSLQ--ALCPDCRQP--LQVL 44 (81)
T ss_dssp EEECTTTCCEEEEE--EECSSSCSC--CCEE
T ss_pred ceECccccccCCCc--ccCcchhhH--HHHH
Confidence 45799999987654 499999998 6653
No 20
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=91.14 E-value=0.12 Score=32.49 Aligned_cols=25 Identities=36% Similarity=0.756 Sum_probs=19.0
Q ss_pred EEEccCcccccccc-----------------C-ccccCCCCCC
Q 032998 70 ILKCHACYTITAEI-----------------G-RIFCPKCGNG 94 (129)
Q Consensus 70 ~~rC~~C~k~~~~~-----------------~-~~fCp~CG~~ 94 (129)
+++|..|+-+|... . .-.||.||.+
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 3 KWQCVVCGFIYDEALGLPEEGIPAGTRWEDIPADWVCPDCGVG 45 (55)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTTCCGGGSCTTCCCTTTCCC
T ss_pred cEEeCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 48999999998641 1 1269999986
No 21
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=90.94 E-value=0.14 Score=31.94 Aligned_cols=25 Identities=36% Similarity=0.668 Sum_probs=18.9
Q ss_pred EEEccCcccccccc-----------------C-ccccCCCCCC
Q 032998 70 ILKCHACYTITAEI-----------------G-RIFCPKCGNG 94 (129)
Q Consensus 70 ~~rC~~C~k~~~~~-----------------~-~~fCp~CG~~ 94 (129)
+++|..|+-+|... . .-.||.||.+
T Consensus 2 ~~~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 44 (52)
T 1yk4_A 2 KLSCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAP 44 (52)
T ss_dssp EEEESSSSCEEETTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred cEEeCCCCeEECCCcCCcccCcCCCCCHhHCCCCCcCCCCCCC
Confidence 48999999998642 1 1269999986
No 22
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=90.49 E-value=0.14 Score=35.21 Aligned_cols=25 Identities=32% Similarity=0.648 Sum_probs=18.9
Q ss_pred EEEccCcccccccc-----------------C-ccccCCCCCC
Q 032998 70 ILKCHACYTITAEI-----------------G-RIFCPKCGNG 94 (129)
Q Consensus 70 ~~rC~~C~k~~~~~-----------------~-~~fCp~CG~~ 94 (129)
+++|..|+-+|... . .-.||.||.+
T Consensus 35 ~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 77 (87)
T 1s24_A 35 KWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGAT 77 (87)
T ss_dssp EEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCC
T ss_pred eEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCCC
Confidence 58999999998641 1 1269999986
No 23
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=90.31 E-value=0.35 Score=35.13 Aligned_cols=56 Identities=25% Similarity=0.358 Sum_probs=31.3
Q ss_pred EccCccccccc-------cCccccCCCCCC---CceeEEEEEeCCCceEEeecCCccccCceeecCC
Q 032998 72 KCHACYTITAE-------IGRIFCPKCGNG---GTLRKVAVTVGENGIVLASRRPRITLRGTKVSIS 128 (129)
Q Consensus 72 rC~~C~k~~~~-------~~~~fCp~CG~~---~tL~rv~v~v~~~G~~~~~~~~~~n~RG~~ySlP 128 (129)
.|+.|+..... ..+.+|+.||.. ....-|.+.+..+|.+++.++......| .+.+|
T Consensus 5 ~C~~CG~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~ii~~~~~vLL~~r~~~~~~g-~w~lP 70 (189)
T 3cng_A 5 FCSQCGGEVILRIPEGDTLPRYICPKCHTIHYQNPKVIVGCIPEWENKVLLCKRAIAPYRG-KWTLP 70 (189)
T ss_dssp BCTTTCCBCEEECCTTCSSCEEEETTTTEEECCCCEEEEEEEEEETTEEEEEEESSSSSTT-CEECS
T ss_pred cCchhCCccccccccCCCCcceECCCCCCccCCCCceEEEEEEEeCCEEEEEEccCCCCCC-eEECc
Confidence 69999965521 125789999931 0122344444457887765544322233 47776
No 24
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=90.31 E-value=0.15 Score=34.68 Aligned_cols=25 Identities=32% Similarity=0.747 Sum_probs=19.1
Q ss_pred EEEccCccccccc-----------------cC-ccccCCCCCC
Q 032998 70 ILKCHACYTITAE-----------------IG-RIFCPKCGNG 94 (129)
Q Consensus 70 ~~rC~~C~k~~~~-----------------~~-~~fCp~CG~~ 94 (129)
+++|..|+-+|.. .+ .-.||.||.+
T Consensus 27 ~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 69 (81)
T 2kn9_A 27 LFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAA 69 (81)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCC
T ss_pred eEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 5889999999874 11 1269999986
No 25
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=89.76 E-value=0.14 Score=33.68 Aligned_cols=25 Identities=28% Similarity=0.656 Sum_probs=18.9
Q ss_pred EEEccCcccccccc-----------------C-ccccCCCCCC
Q 032998 70 ILKCHACYTITAEI-----------------G-RIFCPKCGNG 94 (129)
Q Consensus 70 ~~rC~~C~k~~~~~-----------------~-~~fCp~CG~~ 94 (129)
+++|..|+-+|... . .-.||.||.+
T Consensus 7 ~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 7 KYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSP 49 (70)
T ss_dssp CEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCB
T ss_pred eEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCC
Confidence 47899999998731 1 1269999987
No 26
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=89.47 E-value=0.12 Score=33.59 Aligned_cols=32 Identities=25% Similarity=0.492 Sum_probs=23.7
Q ss_pred eEEEEccCcccccccc--CccccCCCCCCCceeEE
Q 032998 68 RWILKCHACYTITAEI--GRIFCPKCGNGGTLRKV 100 (129)
Q Consensus 68 ~W~~rC~~C~k~~~~~--~~~fCp~CG~~~tL~rv 100 (129)
.-.|+|..|++..... ...-||.||++ .|.|.
T Consensus 19 ~v~Y~C~~Cg~~~~l~~~~~iRC~~CG~R-ILyK~ 52 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQAKEVIRCRECGHR-VMYKM 52 (63)
T ss_dssp CCCCBCSSSCCBCCCCSSSCCCCSSSCCC-CCBCC
T ss_pred CeEEECCCCCCeeecCCCCceECCCCCcE-EEEEe
Confidence 3469999999876432 24789999999 77553
No 27
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=88.73 E-value=0.21 Score=39.52 Aligned_cols=55 Identities=13% Similarity=0.262 Sum_probs=33.2
Q ss_pred EEccCcccccc---ccCccccCCCCCCCceeE----EEEEeCCCceEEeecCCccccCceeecCC
Q 032998 71 LKCHACYTITA---EIGRIFCPKCGNGGTLRK----VAVTVGENGIVLASRRPRITLRGTKVSIS 128 (129)
Q Consensus 71 ~rC~~C~k~~~---~~~~~fCp~CG~~~tL~r----v~v~v~~~G~~~~~~~~~~n~RG~~ySlP 128 (129)
..|..|+.... ...+..||.||.. ..-+ |.+.+..+|++++.+++.+. +..|++|
T Consensus 108 ~fC~~CG~~~~~~~~~~~~~C~~C~~~-~yp~~~~~viv~v~~~~~vLL~rr~~~~--~g~w~lP 169 (269)
T 1vk6_A 108 KYCGYCGHEMYPSKTEWAMLCSHCRER-YYPQIAPCIIVAIRRDDSILLAQHTRHR--NGVHTVL 169 (269)
T ss_dssp SBCTTTCCBEEECSSSSCEEESSSSCE-ECCCCEEEEEEEEEETTEEEEEEETTTC--SSCCBCE
T ss_pred CccccCCCcCccCCCceeeeCCCCCCE-ecCCCCcEEEEEEEeCCEEEEEEecCCC--CCcEECC
Confidence 47899986552 1236789999974 3322 22334566787776655432 3468877
No 28
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=87.59 E-value=0.22 Score=35.49 Aligned_cols=34 Identities=26% Similarity=0.449 Sum_probs=25.6
Q ss_pred eeeeEEEEccCcccccc-ccC-ccccCCCCCCCceeE
Q 032998 65 QLHRWILKCHACYTITA-EIG-RIFCPKCGNGGTLRK 99 (129)
Q Consensus 65 ~~k~W~~rC~~C~k~~~-~~~-~~fCp~CG~~~tL~r 99 (129)
++...-++|..||..|. ... ...||.|++. .+..
T Consensus 62 ~L~v~p~~C~~CG~~F~~~~~kPsrCP~CkSe-~Ie~ 97 (105)
T 2gmg_A 62 VLLIKPAQCRKCGFVFKAEINIPSRCPKCKSE-WIEE 97 (105)
T ss_dssp EEEECCCBBTTTCCBCCCCSSCCSSCSSSCCC-CBCC
T ss_pred EEEEECcChhhCcCeecccCCCCCCCcCCCCC-ccCC
Confidence 56777899999999882 222 3779999998 6654
No 29
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=87.02 E-value=0.22 Score=39.00 Aligned_cols=34 Identities=21% Similarity=0.475 Sum_probs=23.3
Q ss_pred hCceeecCCCCcceeeeeEEEEccCccccccc---------cCccccCCCCCC
Q 032998 51 MGLRLLAPGGMQIRQLHRWILKCHACYTITAE---------IGRIFCPKCGNG 94 (129)
Q Consensus 51 lGL~~~s~~g~~I~~~k~W~~rC~~C~k~~~~---------~~~~fCp~CG~~ 94 (129)
-|+-++++.+. +|.||+-.-++ -...+||+||-=
T Consensus 189 ~g~avv~v~~~----------~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgRI 231 (256)
T 3na7_A 189 KNTSIVTIKKQ----------ACGGCFIRLNDKIYTEVLTSGDMITCPYCGRI 231 (256)
T ss_dssp GGGSEEECBTT----------BCTTTCCBCCHHHHHHHHHSSSCEECTTTCCE
T ss_pred CCceEEEeeCC----------ccCCCCeeeCHHHHHHHHCCCCEEECCCCCee
Confidence 46667776543 89999954331 125799999984
No 30
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=86.50 E-value=0.29 Score=30.15 Aligned_cols=9 Identities=56% Similarity=1.125 Sum_probs=5.1
Q ss_pred ccccCCCCC
Q 032998 85 RIFCPKCGN 93 (129)
Q Consensus 85 ~~fCp~CG~ 93 (129)
+..|+.||.
T Consensus 37 R~~C~kCG~ 45 (50)
T 3j20_Y 37 RWACGKCGY 45 (50)
T ss_dssp EEECSSSCC
T ss_pred eEECCCCCC
Confidence 455666664
No 31
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=86.38 E-value=0.42 Score=32.59 Aligned_cols=23 Identities=43% Similarity=0.866 Sum_probs=18.6
Q ss_pred EEccCccccccccCccccCCCCCCCce
Q 032998 71 LKCHACYTITAEIGRIFCPKCGNGGTL 97 (129)
Q Consensus 71 ~rC~~C~k~~~~~~~~fCp~CG~~~tL 97 (129)
..|..|..+... +.||.||+. .+
T Consensus 24 rAC~~C~~v~~~---d~CPnCgs~-~~ 46 (81)
T 3p8b_A 24 KACRHCHYITSE---DRCPVCGSR-DL 46 (81)
T ss_dssp EEETTTCBEESS---SSCTTTCCC-CE
T ss_pred HHHhhCCCccCC---CCCCCCCCC-cc
Confidence 579999998754 579999997 53
No 32
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=85.60 E-value=0.65 Score=28.97 Aligned_cols=31 Identities=29% Similarity=0.430 Sum_probs=23.2
Q ss_pred eeEEEEccCccccccccCccccCCCCCCCceeE
Q 032998 67 HRWILKCHACYTITAEIGRIFCPKCGNGGTLRK 99 (129)
Q Consensus 67 k~W~~rC~~C~k~~~~~~~~fCp~CG~~~tL~r 99 (129)
..=.+.|+-|+..- .+..-.|.+||+. .|+-
T Consensus 11 ~~~k~iCpkC~a~~-~~gaw~CrKCG~~-~lr~ 41 (51)
T 3j21_g 11 IFKKYVCLRCGATN-PWGAKKCRKCGYK-RLRP 41 (51)
T ss_dssp SSSEEECTTTCCEE-CTTCSSCSSSSSC-CCEE
T ss_pred HhCCccCCCCCCcC-CCCceecCCCCCc-cccc
Confidence 34468899999763 3456889999997 6764
No 33
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=84.45 E-value=0.63 Score=30.78 Aligned_cols=22 Identities=36% Similarity=0.745 Sum_probs=18.4
Q ss_pred EEEccCccccccccCccccCCCCCC
Q 032998 70 ILKCHACYTITAEIGRIFCPKCGNG 94 (129)
Q Consensus 70 ~~rC~~C~k~~~~~~~~fCp~CG~~ 94 (129)
.+.|.-|.++. ..+.||.||+.
T Consensus 11 ~~AC~~C~~~~---~~~~CPnC~s~ 32 (69)
T 1ryq_A 11 EKACRHCHYIT---SEDRCPVCGSR 32 (69)
T ss_dssp CEEETTTCBEE---SSSSCTTTCCC
T ss_pred hhhHHhCCccc---cCCcCCCccCC
Confidence 47899999988 34889999986
No 34
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=83.94 E-value=0.74 Score=35.92 Aligned_cols=27 Identities=22% Similarity=0.482 Sum_probs=19.9
Q ss_pred eEEEEccCccccccccC------ccccCCCCCC
Q 032998 68 RWILKCHACYTITAEIG------RIFCPKCGNG 94 (129)
Q Consensus 68 ~W~~rC~~C~k~~~~~~------~~fCp~CG~~ 94 (129)
-...+|..|++.+.... ...||.||..
T Consensus 119 ~~~~~C~~C~~~~~~~~~~~~~~~p~C~~Cgg~ 151 (249)
T 1m2k_A 119 LRVVRCTSCNNSFEVESAPKIPPLPKCDKCGSL 151 (249)
T ss_dssp EEEEEESSSSCEEECSSCCCSSSCCBCSSSSSB
T ss_pred cceeEeCCCCCcccchhhccCCCCCCCCCCCCC
Confidence 56688999998764311 3579999986
No 35
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=82.07 E-value=0.49 Score=29.61 Aligned_cols=9 Identities=44% Similarity=1.128 Sum_probs=4.4
Q ss_pred ccccCCCCC
Q 032998 85 RIFCPKCGN 93 (129)
Q Consensus 85 ~~fCp~CG~ 93 (129)
+..|+.||.
T Consensus 36 r~~C~kCgy 44 (55)
T 2k4x_A 36 RYSCGRCGY 44 (55)
T ss_dssp EEECTTTCC
T ss_pred EEECCCCCC
Confidence 444555554
No 36
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=81.66 E-value=0.91 Score=32.10 Aligned_cols=42 Identities=24% Similarity=0.599 Sum_probs=28.6
Q ss_pred EEccCccccccccCccccCCCCCCCceeEEEEE--eC---CCceEEeecCC
Q 032998 71 LKCHACYTITAEIGRIFCPKCGNGGTLRKVAVT--VG---ENGIVLASRRP 116 (129)
Q Consensus 71 ~rC~~C~k~~~~~~~~fCp~CG~~~tL~rv~v~--v~---~~G~~~~~~~~ 116 (129)
+.|.+|.+-|.. .-+||.||.+ |.+...= +| .+|+.++++++
T Consensus 49 ~hC~~C~~~f~~--~a~CPdC~q~--LevLkACGAvdYFC~~chgLiSKkR 95 (101)
T 2jne_A 49 ARCRSCGEFIEM--KALCPDCHQP--LQVLKACGAVDYFCQHGHGLISKKR 95 (101)
T ss_dssp EEETTTCCEEEE--EEECTTTCSB--CEEEEETTEEEEEETTTTEEECTTT
T ss_pred EECccccchhhc--cccCcchhhH--HHHHHHhcCcchhhccCCceeecce
Confidence 569999997765 4889999998 7765431 22 44555666544
No 37
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=80.05 E-value=0.81 Score=35.57 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=19.9
Q ss_pred eEEEEccCcccccccc---------CccccCCCCCC
Q 032998 68 RWILKCHACYTITAEI---------GRIFCPKCGNG 94 (129)
Q Consensus 68 ~W~~rC~~C~k~~~~~---------~~~fCp~CG~~ 94 (129)
-+..+|..|++.++.. ....||.||..
T Consensus 119 ~~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~Cgg~ 154 (246)
T 1yc5_A 119 VEEYYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSL 154 (246)
T ss_dssp EEEEEETTTCCEEEHHHHHHHTTTCSSCBCTTTCCB
T ss_pred cceeEcCCCCCCCcHHHHHHHhccCCCCCCCCCCCc
Confidence 5678999999876420 13579999986
No 38
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=79.77 E-value=0.98 Score=37.59 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=20.0
Q ss_pred eEEEEccCccccccccC------------ccccCCCCCC
Q 032998 68 RWILKCHACYTITAEIG------------RIFCPKCGNG 94 (129)
Q Consensus 68 ~W~~rC~~C~k~~~~~~------------~~fCp~CG~~ 94 (129)
-+..+|..|++.+.... ...||.||..
T Consensus 142 l~~~~C~~C~~~~~~~~~~~~~~~~~~~~~P~Cp~Cgg~ 180 (361)
T 1q14_A 142 FAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGEL 180 (361)
T ss_dssp EEEEEETTTCCEECTHHHHHHTTSSSCSCCCBCTTTCCB
T ss_pred ccccCcCCCCccCcHHHHHHHHhhcccCCCCCCcCCCCE
Confidence 56789999998765310 1579999986
No 39
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=79.16 E-value=1.3 Score=34.61 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=19.7
Q ss_pred eEEEEccCcccccccc---------CccccCCCCC-C
Q 032998 68 RWILKCHACYTITAEI---------GRIFCPKCGN-G 94 (129)
Q Consensus 68 ~W~~rC~~C~k~~~~~---------~~~fCp~CG~-~ 94 (129)
-...+|..|++.++.. ....||.||. .
T Consensus 121 ~~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~Cgg~~ 157 (253)
T 1ma3_A 121 MDKLDCLDCHETYDWSEFVEDFNKGEIPRCRKCGSYY 157 (253)
T ss_dssp EEEEEETTTCCEEEGGGTHHHHHTTCCCCCTTTCCSC
T ss_pred cCeeeeCCCCCcCcHHHHHHHhccCCCCCCCCCCCcc
Confidence 5668999999876431 1247999999 5
No 40
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=78.36 E-value=0.96 Score=36.01 Aligned_cols=27 Identities=19% Similarity=0.392 Sum_probs=20.0
Q ss_pred eEEEEccCccccccc------c------CccccCCCCCC
Q 032998 68 RWILKCHACYTITAE------I------GRIFCPKCGNG 94 (129)
Q Consensus 68 ~W~~rC~~C~k~~~~------~------~~~fCp~CG~~ 94 (129)
-+..+|..|++.+.. + ....||.||+.
T Consensus 134 ~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~P~C~~Cgg~ 172 (289)
T 1q1a_A 134 FAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGEL 172 (289)
T ss_dssp EEEEEETTTCCEECHHHHHHHHTCSSCCSCCBCTTTCCB
T ss_pred cCceEECCCCCCCcHHHHHHHHhhccCCCCccCCCCCCE
Confidence 567899999987652 0 12579999986
No 41
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=77.60 E-value=1 Score=28.89 Aligned_cols=24 Identities=25% Similarity=0.602 Sum_probs=21.2
Q ss_pred EEccCccccccccCccccCCCCC-C
Q 032998 71 LKCHACYTITAEIGRIFCPKCGN-G 94 (129)
Q Consensus 71 ~rC~~C~k~~~~~~~~fCp~CG~-~ 94 (129)
-.|..|++.....-+..|..||. |
T Consensus 18 ~~CrRCG~~syH~qK~~Ca~CGygp 42 (57)
T 1vq8_1 18 TKCRRCGEKSYHTKKKVCSSCGFGK 42 (57)
T ss_dssp EECTTTCSEEEETTTTEETTTCTTT
T ss_pred ccccccCChhhhccccccccccCCc
Confidence 57999998877777999999998 7
No 42
>3bbo_3 Ribosomal protein L33; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=77.57 E-value=1.1 Score=29.26 Aligned_cols=14 Identities=43% Similarity=0.911 Sum_probs=11.2
Q ss_pred ccccCCCCCCCceeE
Q 032998 85 RIFCPKCGNGGTLRK 99 (129)
Q Consensus 85 ~~fCp~CG~~~tL~r 99 (129)
+.|||.|... ||-+
T Consensus 49 kKycp~c~kH-tlhk 62 (66)
T 3bbo_3 49 RKFCPYCYKH-TIHG 62 (66)
T ss_dssp CCCCCSSSSC-CCCC
T ss_pred EccCCCCCCe-eeEE
Confidence 5799999997 7743
No 43
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=77.16 E-value=2.6 Score=31.32 Aligned_cols=32 Identities=31% Similarity=0.512 Sum_probs=21.1
Q ss_pred eeEEEEccCccccc-----c-----ccCccccCCCCCCCceeEE
Q 032998 67 HRWILKCHACYTIT-----A-----EIGRIFCPKCGNGGTLRKV 100 (129)
Q Consensus 67 k~W~~rC~~C~k~~-----~-----~~~~~fCp~CG~~~tL~rv 100 (129)
.++.++|+.|+... . ......||.||.+ |.-+
T Consensus 75 ~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~--~~~~ 116 (166)
T 3ir9_A 75 ERVTTKCSVCGYENKWTRRWKPGEPAPAAGNCPKCGSS--LEVT 116 (166)
T ss_dssp EEEEEEESSSSCEEEEEECCCC--CCCCCCBCTTTCCB--EEEE
T ss_pred eEEEEECCCCCceeEEEeecChhhcccccccccccCcc--chhh
Confidence 37889999998432 1 1123579999997 5433
No 44
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=76.33 E-value=0.64 Score=26.71 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=16.7
Q ss_pred CCCCcceeeeeEEEEccCcccccc
Q 032998 58 PGGMQIRQLHRWILKCHACYTITA 81 (129)
Q Consensus 58 ~~g~~I~~~k~W~~rC~~C~k~~~ 81 (129)
++...+++-+.|.++|.+||....
T Consensus 9 peT~l~~~~~~~~l~C~aCG~~~~ 32 (36)
T 1k81_A 9 PDTKIIKEGRVHLLKCMACGAIRP 32 (36)
T ss_dssp CEEEEEEETTEEEEEEETTTEEEE
T ss_pred CCcEEEEeCCcEEEEhhcCCCccc
Confidence 344445566888999999987543
No 45
>2dok_A Telomerase-binding protein EST1A; telomerase-associated protein, unknown function; 1.80A {Homo sapiens} PDB: 2hww_A 2hwx_A
Probab=75.21 E-value=1.8 Score=32.02 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=24.1
Q ss_pred ceeeEeechHHHHHHHHHhCceeecCC
Q 032998 33 STVACITGDYAMQNVILQMGLRLLAPG 59 (129)
Q Consensus 33 ~~va~~TdDyamQNVl~~lGL~~~s~~ 59 (129)
..|+++|.|..|...|+..||.++++.
T Consensus 151 ~~vvLvTnD~nLr~KA~~~Gi~~~~~~ 177 (186)
T 2dok_A 151 REVVLLTDDRNLRVKALTRNVPVRDIP 177 (186)
T ss_dssp EEEEEECCCHHHHHHHHHTTCCEECHH
T ss_pred CcEEEEeCcHHHHHHHHHCCCeeCcHH
Confidence 378999999999999999999987653
No 46
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=74.51 E-value=2 Score=34.66 Aligned_cols=28 Identities=25% Similarity=0.528 Sum_probs=19.6
Q ss_pred eEEEEccCccccccccC-------------ccccCCCCCCCcee
Q 032998 68 RWILKCHACYTITAEIG-------------RIFCPKCGNGGTLR 98 (129)
Q Consensus 68 ~W~~rC~~C~k~~~~~~-------------~~fCp~CG~~~tL~ 98 (129)
-+..+|..|++.++... ...|| ||.. ||
T Consensus 152 ~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~P~C~-Cgg~--lr 192 (290)
T 3u31_A 152 VFEAVCCTCNKIVKLNKIMLQKTSHFMHQLPPECP-CGGI--FK 192 (290)
T ss_dssp EEEEEETTTCCEEECCTGGGSTTSSTTTSSSCBCT-TSCB--EE
T ss_pred cCcceeCCCCCcCChhHhhhcccccccccCCCCCC-CCCE--EC
Confidence 46789999998764211 24599 9986 55
No 47
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=73.34 E-value=1.2 Score=29.35 Aligned_cols=33 Identities=18% Similarity=0.424 Sum_probs=20.3
Q ss_pred EEEEccCcccccc-c--cCccccCCCCCCCceeEEEEE
Q 032998 69 WILKCHACYTITA-E--IGRIFCPKCGNGGTLRKVAVT 103 (129)
Q Consensus 69 W~~rC~~C~k~~~-~--~~~~fCp~CG~~~tL~rv~v~ 103 (129)
-+.+|+ |++..- + ....-|| ||....++++.+-
T Consensus 3 ~vv~C~-C~~~~~~~~~~kT~~C~-CG~~~~~~k~rif 38 (71)
T 1gh9_A 3 IIFRCD-CGRALYSREGAKTRKCV-CGRTVNVKDRRIF 38 (71)
T ss_dssp EEEEET-TSCCEEEETTCSEEEET-TTEEEECCSSSCB
T ss_pred EEEECC-CCCEEEEcCCCcEEECC-CCCeeeeceEEEE
Confidence 368999 997642 1 1146799 9986333444443
No 48
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=73.03 E-value=1.8 Score=40.93 Aligned_cols=28 Identities=25% Similarity=0.651 Sum_probs=20.8
Q ss_pred EEEccCccccc----------cccCccccCCCCCCCceeE
Q 032998 70 ILKCHACYTIT----------AEIGRIFCPKCGNGGTLRK 99 (129)
Q Consensus 70 ~~rC~~C~k~~----------~~~~~~fCp~CG~~~tL~r 99 (129)
-|+|+.|.... .+++...||+||.+ |.|
T Consensus 502 hy~c~~c~~~ef~~~~~~~~g~dlp~k~cp~cg~~--~~~ 539 (1041)
T 3f2b_A 502 HYVCPNCKHSEFFNDGSVGSGFDLPDKNCPRCGTK--YKK 539 (1041)
T ss_dssp EEECTTTCCEEECCSSCCSCGGGSCCCBCTTTCCB--CEE
T ss_pred cccCccccccccccccccccccCCccccCcccccc--ccc
Confidence 48999999532 24566789999997 654
No 49
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=72.99 E-value=1.7 Score=27.72 Aligned_cols=21 Identities=29% Similarity=0.880 Sum_probs=15.1
Q ss_pred EEccCccccccccCccccCCCCC
Q 032998 71 LKCHACYTITAEIGRIFCPKCGN 93 (129)
Q Consensus 71 ~rC~~C~k~~~~~~~~fCp~CG~ 93 (129)
-.|+.|+... ...-.||.||.
T Consensus 31 ~~c~~cG~~~--~pH~vc~~CG~ 51 (60)
T 2zjr_Z 31 TECPQCHGKK--LSHHICPNCGY 51 (60)
T ss_dssp EECTTTCCEE--CTTBCCTTTCB
T ss_pred eECCCCCCEe--CCceEcCCCCc
Confidence 4688888763 34577888884
No 50
>3v2d_6 50S ribosomal protein L33; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_5 2hgj_5 2hgu_5 2j03_6 2jl6_6 2jl8_6 2v47_6 2v49_6 2wdi_6 2wdj_6 2wdl_6 2wdn_6 2wh2_6 2wh4_6 2wrj_6 2wrl_6 2wro_6 2wrr_6 2x9s_6 2x9u_6 ...
Probab=72.95 E-value=1.2 Score=27.88 Aligned_cols=31 Identities=29% Similarity=0.727 Sum_probs=21.3
Q ss_pred eEEEEccCcccc-cc-------c---c-CccccCCCCCCCceeE
Q 032998 68 RWILKCHACYTI-TA-------E---I-GRIFCPKCGNGGTLRK 99 (129)
Q Consensus 68 ~W~~rC~~C~k~-~~-------~---~-~~~fCp~CG~~~tL~r 99 (129)
.-.|.|++|... |. . + -+.|||.|+.. ||-+
T Consensus 8 ~I~L~ct~c~~~nY~T~KNkrn~p~rLelkKycp~c~kH-tlhk 50 (54)
T 3v2d_6 8 KLLLECTECKRRNYATEKNKRNTPNKLELRKYCPWCRKH-TVHR 50 (54)
T ss_dssp EEEEEETTTCCEEEEEEEETTTSCSCCEEEEEETTTTEE-EEEE
T ss_pred eEEEEEeCCCCccEeEeecCCCCCcccEEeeeCCCCCCE-eeEE
Confidence 457999999642 21 0 1 16899999997 7754
No 51
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=72.93 E-value=1.9 Score=35.92 Aligned_cols=28 Identities=25% Similarity=0.583 Sum_probs=20.6
Q ss_pred eeEEEEccCccccccc----cCccccCCCCCC
Q 032998 67 HRWILKCHACYTITAE----IGRIFCPKCGNG 94 (129)
Q Consensus 67 k~W~~rC~~C~k~~~~----~~~~fCp~CG~~ 94 (129)
..|++.|++|+..... .....||.||++
T Consensus 241 ~g~v~~C~~C~~~~~~~~~~~~~~~C~~cg~~ 272 (392)
T 3axs_A 241 FGYIQYCFNCMNREVVTDLYKFKEKCPHCGSK 272 (392)
T ss_dssp EEEEEECTTTCCEEEECCGGGCCSBCTTTCSB
T ss_pred cceEEECCCCCCeEeecCCCCCCCcCCCCCCc
Confidence 4788999999854321 124789999997
No 52
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=72.80 E-value=2.3 Score=34.28 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=19.6
Q ss_pred eEEEEccCcccccccc---------CccccCCCCCC
Q 032998 68 RWILKCHACYTITAEI---------GRIFCPKCGNG 94 (129)
Q Consensus 68 ~W~~rC~~C~k~~~~~---------~~~fCp~CG~~ 94 (129)
-+..+|..|++.+... ....||.||+.
T Consensus 137 ~~~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~ 172 (285)
T 3glr_A 137 FASATCTVCQRPFPGEDIRADVMADRVPRCPVCTGV 172 (285)
T ss_dssp EEEEEETTTCCEEEGGGGHHHHHTTCCCBCTTTCCB
T ss_pred CCeEEECCCCCcCCHHHHHHHhhcCCCCCCCCCCCc
Confidence 5668999999876521 12469999985
No 53
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=72.57 E-value=1.4 Score=28.67 Aligned_cols=24 Identities=21% Similarity=0.809 Sum_probs=20.8
Q ss_pred EEccCccccccccCccccCCCCC-C
Q 032998 71 LKCHACYTITAEIGRIFCPKCGN-G 94 (129)
Q Consensus 71 ~rC~~C~k~~~~~~~~fCp~CG~-~ 94 (129)
-.|..|++.....-+..|..||. |
T Consensus 18 ~lCrRCG~~syH~qK~~Ca~CGygp 42 (62)
T 3j21_e 18 IRCRRCGRVSYNVKKGYCAACGFGR 42 (62)
T ss_dssp CBCSSSCSBCEETTTTEETTTCTTT
T ss_pred eeecccCcchhccccccccccCCch
Confidence 46999998877778999999998 6
No 54
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=71.97 E-value=1.6 Score=30.54 Aligned_cols=25 Identities=20% Similarity=0.473 Sum_probs=21.9
Q ss_pred EEEccCccccccccCccccCCCCCC
Q 032998 70 ILKCHACYTITAEIGRIFCPKCGNG 94 (129)
Q Consensus 70 ~~rC~~C~k~~~~~~~~fCp~CG~~ 94 (129)
--.|..|++.....-+..|..||.|
T Consensus 16 HtlCrRCG~~syH~qK~~Ca~CGyp 40 (94)
T 3iz5_l 16 HTLCVRCGRRSFHLQKSTCSSCGYP 40 (94)
T ss_dssp EEECTTTCSEEEEGGGTEETTTCSS
T ss_pred cceecCcCchhhhcccccccccCCc
Confidence 3579999988877789999999998
No 55
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=71.43 E-value=2.1 Score=27.30 Aligned_cols=21 Identities=29% Similarity=0.738 Sum_probs=16.9
Q ss_pred EEccCccccccccCccccCCCCCC
Q 032998 71 LKCHACYTITAEIGRIFCPKCGNG 94 (129)
Q Consensus 71 ~rC~~C~k~~~~~~~~fCp~CG~~ 94 (129)
..|..|..+... +-||.||+.
T Consensus 2 rAC~~C~~v~~~---~~CpnC~~~ 22 (59)
T 3lpe_B 2 RACLKCKYLTND---EICPICHSP 22 (59)
T ss_dssp EEETTTCBEESS---SBCTTTCCB
T ss_pred cccccCCcccCC---CCCCCCCCC
Confidence 479999988654 479999985
No 56
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=71.41 E-value=0.92 Score=40.29 Aligned_cols=25 Identities=24% Similarity=0.640 Sum_probs=2.9
Q ss_pred EEEccCcccccccc---CccccCCCCCC
Q 032998 70 ILKCHACYTITAEI---GRIFCPKCGNG 94 (129)
Q Consensus 70 ~~rC~~C~k~~~~~---~~~fCp~CG~~ 94 (129)
.-+|..||...... ....||.||++
T Consensus 540 ~~~C~~CGy~~~~~~~~~~~~CP~Cg~~ 567 (605)
T 1h7b_A 540 VDKCFTCGSTHEMTPTENGFVCSICGET 567 (605)
T ss_dssp EEET------------------------
T ss_pred CccCcccCCcCccCccccCCcCCCCCCC
Confidence 46899999754211 13679999985
No 57
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=71.13 E-value=1.5 Score=30.63 Aligned_cols=25 Identities=24% Similarity=0.522 Sum_probs=22.0
Q ss_pred EEEccCccccccccCccccCCCCCC
Q 032998 70 ILKCHACYTITAEIGRIFCPKCGNG 94 (129)
Q Consensus 70 ~~rC~~C~k~~~~~~~~fCp~CG~~ 94 (129)
--.|..|++.....-+..|..||.|
T Consensus 16 HtlCrRCG~~syH~qK~~Ca~CGyp 40 (94)
T 4a18_A 16 HTLCRRCGKATYHKQKLRCAACGYP 40 (94)
T ss_dssp EEECTTTCSEEEETTTTEESSSCGG
T ss_pred cceecCcCchhhhhccccccccCCc
Confidence 4579999998878789999999988
No 58
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=70.93 E-value=0.96 Score=26.94 Aligned_cols=9 Identities=56% Similarity=1.339 Sum_probs=5.3
Q ss_pred ccccCCCCC
Q 032998 85 RIFCPKCGN 93 (129)
Q Consensus 85 ~~fCp~CG~ 93 (129)
...|+.||.
T Consensus 24 elvC~~CG~ 32 (50)
T 1pft_A 24 EIVCAKCGY 32 (50)
T ss_dssp EEEESSSCC
T ss_pred eEECcccCC
Confidence 455666665
No 59
>3r8s_1 50S ribosomal protein L33; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_1 3j19_1 2wwq_4 3oat_1* 3oas_1* 3ofd_1 3ofc_1 3ofr_1* 3ofz_1* 3og0_1 3ofq_1 3r8t_1 3i1n_1 1vs8_1 1vs6_1 1vt2_1 3i1p_1 3i1r_1 3i1t_1 3i20_1 ...
Probab=70.30 E-value=1.7 Score=26.74 Aligned_cols=31 Identities=16% Similarity=0.119 Sum_probs=20.8
Q ss_pred eEEEEccCcccc-cc----------ccC-ccccCCCCCCCceeE
Q 032998 68 RWILKCHACYTI-TA----------EIG-RIFCPKCGNGGTLRK 99 (129)
Q Consensus 68 ~W~~rC~~C~k~-~~----------~~~-~~fCp~CG~~~tL~r 99 (129)
.-.|.|.+|... |. .+. +.|||.|+.. ||-+
T Consensus 5 ~I~L~ct~c~~~nY~t~kn~~~~~~rLelkKycp~~~kh-tlhk 47 (50)
T 3r8s_1 5 KIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQH-VIYK 47 (50)
T ss_dssp EEEEEESSSSCCEEEEEECGGGCCSCCCEEEEETTTTEE-EEEE
T ss_pred EEEEEEcCCCCEEEEEEccCCCCCccceEeeeCcCCCCE-eeEE
Confidence 457999999633 21 011 6899999986 7654
No 60
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=69.87 E-value=2 Score=30.17 Aligned_cols=25 Identities=24% Similarity=0.538 Sum_probs=21.3
Q ss_pred EEEccCccccccccCccccCCCCCC
Q 032998 70 ILKCHACYTITAEIGRIFCPKCGNG 94 (129)
Q Consensus 70 ~~rC~~C~k~~~~~~~~fCp~CG~~ 94 (129)
-..|+.|++-.....+..|..||.+
T Consensus 16 H~lCrRCG~~sfH~qK~~CgkCGYp 40 (97)
T 2zkr_2 16 HTLCRRCGSKAYHLQKSTCGKCGYP 40 (97)
T ss_dssp EECCTTTCSSCEETTSCCBTTTCTT
T ss_pred CCcCCCCCCccCcCccccCcccCCc
Confidence 4579999987667778999999987
No 61
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=67.33 E-value=3.5 Score=27.32 Aligned_cols=18 Identities=28% Similarity=0.772 Sum_probs=13.9
Q ss_pred ccccCCCCCCCceeEEEEE
Q 032998 85 RIFCPKCGNGGTLRKVAVT 103 (129)
Q Consensus 85 ~~fCp~CG~~~tL~rv~v~ 103 (129)
+..||.||.. .++|+++-
T Consensus 27 ky~C~fCgk~-~vkR~a~G 44 (73)
T 1ffk_W 27 KYKCPVCGFP-KLKRASTS 44 (73)
T ss_pred CccCCCCCCc-eeEEEEeE
Confidence 5778888886 78887763
No 62
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=67.28 E-value=2.4 Score=28.87 Aligned_cols=17 Identities=24% Similarity=0.882 Sum_probs=14.3
Q ss_pred ccccCCCCCCCceeEEEE
Q 032998 85 RIFCPKCGNGGTLRKVAV 102 (129)
Q Consensus 85 ~~fCp~CG~~~tL~rv~v 102 (129)
+..||.||.. .++|+++
T Consensus 35 ky~CpfCGk~-~vkR~a~ 51 (83)
T 3j21_i 35 KHTCPVCGRK-AVKRIST 51 (83)
T ss_dssp CBCCSSSCSS-CEEEEET
T ss_pred ccCCCCCCCc-eeEecCc
Confidence 6789999998 8898775
No 63
>2zjr_1 50S ribosomal protein L33; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.6 PDB: 1nwx_1* 1xbp_1* 2zjp_1* 2zjq_1 1nwy_1 3cf5_1* 3dll_1* 3pio_1* 3pip_1* 1pnu_1 1pny_1 1vor_3 1vou_3 1vow_3 1voy_3 1vp0_3
Probab=66.95 E-value=2.8 Score=26.23 Aligned_cols=31 Identities=6% Similarity=-0.009 Sum_probs=21.1
Q ss_pred eEEEEccCcccccc----c-------c-CccccCCCCCCCceeE
Q 032998 68 RWILKCHACYTITA----E-------I-GRIFCPKCGNGGTLRK 99 (129)
Q Consensus 68 ~W~~rC~~C~k~~~----~-------~-~~~fCp~CG~~~tL~r 99 (129)
.-.|.|.+|..... + + -+.|||.|... ||-+
T Consensus 9 ~I~L~ct~c~~~~Y~t~Knrrn~~~rLelkKycp~~~kH-tlhk 51 (55)
T 2zjr_1 9 IVKMESSAGTGFYYTTTKNRRNTQAKLELKKYDPVAKKH-VVFR 51 (55)
T ss_pred EEEEEEcccCCeeEeEcccCCCCCcceEEEccCCCCCCE-EeEE
Confidence 45799999964321 1 1 15699999997 7754
No 64
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=66.75 E-value=2.6 Score=26.81 Aligned_cols=22 Identities=27% Similarity=0.951 Sum_probs=15.1
Q ss_pred EEEccCccccccccCccccCCCCC
Q 032998 70 ILKCHACYTITAEIGRIFCPKCGN 93 (129)
Q Consensus 70 ~~rC~~C~k~~~~~~~~fCp~CG~ 93 (129)
.-.|+.|++... ..-.||.||.
T Consensus 30 l~~c~~cGe~~~--~H~vc~~CG~ 51 (60)
T 3v2d_5 30 LVPCPECKAMKP--PHTVCPECGY 51 (60)
T ss_dssp CEECTTTCCEEC--TTSCCTTTCE
T ss_pred eeECCCCCCeec--ceEEcCCCCc
Confidence 356888887443 3567888884
No 65
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=65.74 E-value=3.6 Score=28.39 Aligned_cols=37 Identities=24% Similarity=0.578 Sum_probs=26.0
Q ss_pred eeeeeEEEEccCccccc---cccCccccCCCCCCCceeEEEEE
Q 032998 64 RQLHRWILKCHACYTIT---AEIGRIFCPKCGNGGTLRKVAVT 103 (129)
Q Consensus 64 ~~~k~W~~rC~~C~k~~---~~~~~~fCp~CG~~~tL~rv~v~ 103 (129)
+-+++| ++|. |++-+ ..++..-|+.||+. ...|++..
T Consensus 43 ~a~KRF-FkC~-C~~Rt~sl~r~P~~~C~~Cg~~-~wer~~M~ 82 (92)
T 2kwq_A 43 NGVKRF-FKCP-CGNRTISLDRLPKKHCSTCGLF-KWERVGML 82 (92)
T ss_dssp EEECEE-EECT-TSCEEEESSSSCCSCCTTTCSC-CCEEECCC
T ss_pred eeeEEE-EECC-CCCceeEeeeCCCCCCCCCCCC-ceEEeecc
Confidence 333444 7895 99654 44567789999998 78887763
No 66
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=65.27 E-value=2.2 Score=27.16 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=16.9
Q ss_pred EccCccccccccCccccCCCCCC
Q 032998 72 KCHACYTITAEIGRIFCPKCGNG 94 (129)
Q Consensus 72 rC~~C~k~~~~~~~~fCp~CG~~ 94 (129)
.|.||.+.+.+.....||.|++.
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~ 39 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNV 39 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCC
T ss_pred cccccCcccCCCccEECCccCcC
Confidence 49999987765444569999874
No 67
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=65.14 E-value=5.6 Score=25.56 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=14.7
Q ss_pred cccCCCCCCCceeE--EEEEeCCCceE
Q 032998 86 IFCPKCGNGGTLRK--VAVTVGENGIV 110 (129)
Q Consensus 86 ~fCp~CG~~~tL~r--v~v~v~~~G~~ 110 (129)
.-||.||+. .|.+ +.++++=.|..
T Consensus 3 m~Cp~Cg~~-~l~~~~~~~~~~~~G~~ 28 (78)
T 3ga8_A 3 MKCPVCHQG-EMVSGIKDIPYTFRGRK 28 (78)
T ss_dssp CBCTTTSSS-BEEEEEEEEEEEETTEE
T ss_pred eECCCCCCC-eeEeEEEEEEEEECCEE
Confidence 359999986 6743 33444445654
No 68
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=63.63 E-value=3.3 Score=31.89 Aligned_cols=27 Identities=11% Similarity=0.212 Sum_probs=13.2
Q ss_pred eEEEEccCccccccccC------ccccCCCCCC
Q 032998 68 RWILKCHACYTITAEIG------RIFCPKCGNG 94 (129)
Q Consensus 68 ~W~~rC~~C~k~~~~~~------~~fCp~CG~~ 94 (129)
....+|..|++.++... ..-|+.||..
T Consensus 111 ~~~~~C~~C~~~~~~~~~~~~~~~p~c~~Cgg~ 143 (235)
T 1s5p_A 111 LLKVRCSQSGQVLDWTGDVTPEDKCHCCQFPAP 143 (235)
T ss_dssp EEEEEETTTCCEEECCSCCCSSCCC-------C
T ss_pred ceEEEeCCCCCcccchhhccCCCCCCCCCCCCe
Confidence 56789999998765311 2468889985
No 69
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=63.54 E-value=2.5 Score=29.88 Aligned_cols=10 Identities=40% Similarity=0.823 Sum_probs=8.7
Q ss_pred ccccCCCCCC
Q 032998 85 RIFCPKCGNG 94 (129)
Q Consensus 85 ~~fCp~CG~~ 94 (129)
..|||.|||-
T Consensus 4 ~~FCp~Cgnl 13 (122)
T 1twf_I 4 FRFCRDCNNM 13 (122)
T ss_dssp CCBCSSSCCB
T ss_pred CCcccccCcc
Confidence 4899999995
No 70
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=62.96 E-value=2.9 Score=28.94 Aligned_cols=17 Identities=35% Similarity=0.829 Sum_probs=14.1
Q ss_pred ccccCCCCCCCceeEEEE
Q 032998 85 RIFCPKCGNGGTLRKVAV 102 (129)
Q Consensus 85 ~~fCp~CG~~~tL~rv~v 102 (129)
+.+||.||.. .++|+++
T Consensus 36 ky~CpfCgk~-~vkR~a~ 52 (92)
T 3iz5_m 36 KYFCEFCGKF-AVKRKAV 52 (92)
T ss_dssp CBCCTTTCSS-CBEEEET
T ss_pred cccCcccCCC-eeEecCc
Confidence 5789999997 8888775
No 71
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=62.80 E-value=4.3 Score=33.10 Aligned_cols=12 Identities=42% Similarity=1.110 Sum_probs=9.7
Q ss_pred ccccCCCCCCCc
Q 032998 85 RIFCPKCGNGGT 96 (129)
Q Consensus 85 ~~fCp~CG~~~t 96 (129)
+.+||+||+...
T Consensus 182 ~~~CPvCGs~P~ 193 (309)
T 2fiy_A 182 RTLCPACGSPPM 193 (309)
T ss_dssp CSSCTTTCCCEE
T ss_pred CCCCCCCCCcCc
Confidence 689999999833
No 72
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=62.23 E-value=1.9 Score=29.19 Aligned_cols=10 Identities=40% Similarity=0.996 Sum_probs=8.2
Q ss_pred ccccCCCCCC
Q 032998 85 RIFCPKCGNG 94 (129)
Q Consensus 85 ~~fCp~CG~~ 94 (129)
..-||.||++
T Consensus 47 g~~CPvCgs~ 56 (112)
T 1l8d_A 47 KGKCPVCGRE 56 (112)
T ss_dssp SEECTTTCCE
T ss_pred CCCCCCCCCc
Confidence 3569999997
No 73
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=61.57 E-value=5.5 Score=32.37 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=19.6
Q ss_pred eEEEEccC--ccccccc---------cCccccCCCCCC
Q 032998 68 RWILKCHA--CYTITAE---------IGRIFCPKCGNG 94 (129)
Q Consensus 68 ~W~~rC~~--C~k~~~~---------~~~~fCp~CG~~ 94 (129)
-...+|.. |++.+.. .....||.||..
T Consensus 157 ~~~~~C~~~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~ 194 (323)
T 1j8f_A 157 FYTSHCVSASCRHEYPLSWMKEKIFSEVTPKCEDCQSL 194 (323)
T ss_dssp EEEEEESCTTTCCEECHHHHHHHHHTTCCCBCTTTCCB
T ss_pred cceeecCCCccCccccHHHHHHhhccCCCCCCcCCCCc
Confidence 56689999 9987642 112579999986
No 74
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=61.56 E-value=4.5 Score=26.51 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=18.6
Q ss_pred EEEccCcccccc---c-cCccccCCCCCC
Q 032998 70 ILKCHACYTITA---E-IGRIFCPKCGNG 94 (129)
Q Consensus 70 ~~rC~~C~k~~~---~-~~~~fCp~CG~~ 94 (129)
.-+|++|+++.- . .+...|..||..
T Consensus 7 ~VKCp~C~niq~VFShA~tvV~C~~Cg~~ 35 (66)
T 1qxf_A 7 KVKCPDCEHEQVIFDHPSTIVKCIICGRT 35 (66)
T ss_dssp EEECTTTCCEEEEESSCSSCEECSSSCCE
T ss_pred EEECCCCCCceEEEecCceEEEcccCCCE
Confidence 468999998653 2 236889999985
No 75
>1o4w_A PIN (PILT N-terminus) domain; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS translation; 1.90A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=61.29 E-value=8.1 Score=27.00 Aligned_cols=30 Identities=17% Similarity=0.038 Sum_probs=26.3
Q ss_pred ceeeEeechHHHHHHHHHhCceeecCCCCc
Q 032998 33 STVACITGDYAMQNVILQMGLRLLAPGGMQ 62 (129)
Q Consensus 33 ~~va~~TdDyamQNVl~~lGL~~~s~~g~~ 62 (129)
.+..++|.|..++..+...|++++.+.+.+
T Consensus 110 ~~~~LvT~D~~l~~~a~~~Gv~vi~~~~~~ 139 (147)
T 1o4w_A 110 YGCILITNDKELKRKAKQRGIPVGYLKEDK 139 (147)
T ss_dssp HTCEEECCCHHHHHHHHHTTCCEECCCCCC
T ss_pred hCCEEEECCHHHHHHHHHCCCeEEEecCCc
Confidence 347899999999999999999999987654
No 76
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=60.78 E-value=5.8 Score=26.28 Aligned_cols=26 Identities=15% Similarity=0.309 Sum_probs=19.2
Q ss_pred EEEccCccccccccC---ccccCCCCCCC
Q 032998 70 ILKCHACYTITAEIG---RIFCPKCGNGG 95 (129)
Q Consensus 70 ~~rC~~C~k~~~~~~---~~fCp~CG~~~ 95 (129)
...|.-|++.+.-.. ...||.||+-+
T Consensus 37 ~I~CnDC~~~s~v~~h~lg~kC~~C~SyN 65 (79)
T 2k2d_A 37 DILCNDCNGRSTVQFHILGMKCKICESYN 65 (79)
T ss_dssp EEEESSSCCEEEEECCTTCCCCTTTSCCC
T ss_pred EEECCCCCCCccCCceeecccCcCCCCcC
Confidence 368999998775433 23699999973
No 77
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=60.04 E-value=2.7 Score=29.27 Aligned_cols=10 Identities=30% Similarity=0.743 Sum_probs=8.8
Q ss_pred ccccCCCCCC
Q 032998 85 RIFCPKCGNG 94 (129)
Q Consensus 85 ~~fCp~CG~~ 94 (129)
-.|||.|||-
T Consensus 4 m~FCp~Cgn~ 13 (113)
T 3h0g_I 4 FQYCIECNNM 13 (113)
T ss_dssp CCCCSSSCCC
T ss_pred ceeCcCCCCE
Confidence 4899999996
No 78
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=60.00 E-value=3.5 Score=28.56 Aligned_cols=17 Identities=35% Similarity=0.682 Sum_probs=14.0
Q ss_pred ccccCCCCCCCceeEEEE
Q 032998 85 RIFCPKCGNGGTLRKVAV 102 (129)
Q Consensus 85 ~~fCp~CG~~~tL~rv~v 102 (129)
+.+||.||.. .++|+++
T Consensus 36 ky~CpfCgk~-~vkR~a~ 52 (92)
T 3izc_m 36 RYDCSFCGKK-TVKRGAA 52 (92)
T ss_dssp CCCCSSSCSS-CCEEEET
T ss_pred CCcCCCCCCc-eeeeccc
Confidence 5789999987 8888775
No 79
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=59.42 E-value=4.2 Score=31.09 Aligned_cols=23 Identities=30% Similarity=0.767 Sum_probs=16.9
Q ss_pred EEccCccccc--cccCccccCCCCC
Q 032998 71 LKCHACYTIT--AEIGRIFCPKCGN 93 (129)
Q Consensus 71 ~rC~~C~k~~--~~~~~~fCp~CG~ 93 (129)
..|..|+... ......||+.||.
T Consensus 11 ~~Cw~C~~~~~~~~~~~~fC~~c~~ 35 (207)
T 3bvo_A 11 PRCWNCGGPWGPGREDRFFCPQCRA 35 (207)
T ss_dssp CBCSSSCCBCCSSCSCCCBCTTTCC
T ss_pred CCCCCCCCCcccccccccccccccc
Confidence 4699999752 2234699999996
No 80
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=58.70 E-value=2.9 Score=30.16 Aligned_cols=17 Identities=24% Similarity=0.729 Sum_probs=13.6
Q ss_pred ccccCCCCCCCceeEEEE
Q 032998 85 RIFCPKCGNGGTLRKVAV 102 (129)
Q Consensus 85 ~~fCp~CG~~~tL~rv~v 102 (129)
+.+||.||.. .++|+++
T Consensus 60 kytCPfCGk~-~vKR~av 76 (116)
T 3cc2_Z 60 DHACPNCGED-RVDRQGT 76 (116)
T ss_dssp CEECSSSCCE-EEEEEET
T ss_pred CCcCCCCCCc-eeEecCc
Confidence 6789999986 7888775
No 81
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=58.42 E-value=2.3 Score=26.56 Aligned_cols=9 Identities=44% Similarity=1.427 Sum_probs=5.2
Q ss_pred ccccCCCCC
Q 032998 85 RIFCPKCGN 93 (129)
Q Consensus 85 ~~fCp~CG~ 93 (129)
...|..||.
T Consensus 30 e~vC~~CGl 38 (58)
T 1dl6_A 30 DMICPECGL 38 (58)
T ss_dssp CEECTTTCC
T ss_pred eEEeCCCCC
Confidence 455666665
No 82
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=58.36 E-value=2 Score=31.94 Aligned_cols=36 Identities=28% Similarity=0.513 Sum_probs=25.1
Q ss_pred eeeeEEEEccCccccc-cccCccccCCCCCCCceeEEE
Q 032998 65 QLHRWILKCHACYTIT-AEIGRIFCPKCGNGGTLRKVA 101 (129)
Q Consensus 65 ~~k~W~~rC~~C~k~~-~~~~~~fCp~CG~~~tL~rv~ 101 (129)
+.-.-.-+|..|+..- +......||.||+. -.||++
T Consensus 135 ~lGvv~a~~~~~g~~m~~~~~~~~cp~~g~~-e~RKva 171 (179)
T 3m7n_A 135 EMGVLRALCSNCKTEMVREGDILKCPECGRV-EKRKIS 171 (179)
T ss_dssp TCEEEECBCTTTCCBCEECSSSEECSSSCCE-ECCCBC
T ss_pred CCCEEEecccccCCceEECCCEEECCCCCCE-EEEecc
Confidence 3445667898898643 32246889999997 677776
No 83
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=57.60 E-value=3.1 Score=30.14 Aligned_cols=10 Identities=40% Similarity=0.823 Sum_probs=8.9
Q ss_pred ccccCCCCCC
Q 032998 85 RIFCPKCGNG 94 (129)
Q Consensus 85 ~~fCp~CG~~ 94 (129)
..|||.|||-
T Consensus 24 ~~FCPeCgNm 33 (133)
T 3qt1_I 24 FRFCRDCNNM 33 (133)
T ss_dssp CCBCTTTCCB
T ss_pred CeeCCCCCCE
Confidence 5899999995
No 84
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=57.33 E-value=5.6 Score=25.79 Aligned_cols=26 Identities=23% Similarity=0.517 Sum_probs=19.0
Q ss_pred EEEEccCcccccc---c-cCccccCCCCCC
Q 032998 69 WILKCHACYTITA---E-IGRIFCPKCGNG 94 (129)
Q Consensus 69 W~~rC~~C~k~~~---~-~~~~fCp~CG~~ 94 (129)
..-+|++|+++.- . .+...|..||..
T Consensus 14 m~VkCp~C~~~q~VFSha~t~V~C~~Cgt~ 43 (63)
T 3j20_W 14 LRVKCIDCGNEQIVFSHPATKVRCLICGAT 43 (63)
T ss_dssp EEEECSSSCCEEEEESSCSSCEECSSSCCE
T ss_pred EEEECCCCCCeeEEEecCCeEEEccCcCCE
Confidence 3468999997652 2 236889999984
No 85
>1nkw_1 50S ribosomal protein L33; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_1* 1yl3_6 2b66_6 2b9n_6 2b9p_6
Probab=55.47 E-value=5.8 Score=26.94 Aligned_cols=31 Identities=6% Similarity=-0.009 Sum_probs=21.3
Q ss_pred eEEEEccCcccccc----c-------c-CccccCCCCCCCceeE
Q 032998 68 RWILKCHACYTITA----E-------I-GRIFCPKCGNGGTLRK 99 (129)
Q Consensus 68 ~W~~rC~~C~k~~~----~-------~-~~~fCp~CG~~~tL~r 99 (129)
.-.+.|++|..... + . -+.|||.|... ||-|
T Consensus 36 ~I~L~Ct~ct~~nY~T~KNrrn~peRLELkKYcP~crKH-tlHk 78 (82)
T 1nkw_1 36 IVKMESSAGTGFYYTTTKNRRNTQAKLELKKYDPVAKKH-VVFR 78 (82)
T ss_pred EEEEEEecCCCeeEEEecCCCCCCcceEEEccCCCCCCe-eeEE
Confidence 55799999964321 1 1 15799999997 7754
No 86
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=53.59 E-value=3.8 Score=28.97 Aligned_cols=17 Identities=35% Similarity=0.821 Sum_probs=13.1
Q ss_pred ccccCCCCCCCceeEEEE
Q 032998 85 RIFCPKCGNGGTLRKVAV 102 (129)
Q Consensus 85 ~~fCp~CG~~~tL~rv~v 102 (129)
+.+||.||.. .++|+++
T Consensus 36 ky~CpfCgk~-~vKR~a~ 52 (103)
T 4a17_Y 36 KYGCPFCGKV-AVKRAAV 52 (103)
T ss_dssp CEECTTTCCE-EEEEEET
T ss_pred CCCCCCCCCc-eeeecCc
Confidence 5678888887 7888764
No 87
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=51.78 E-value=2.3 Score=28.25 Aligned_cols=16 Identities=38% Similarity=0.723 Sum_probs=10.3
Q ss_pred ccccCCCCCCCceeEEE
Q 032998 85 RIFCPKCGNGGTLRKVA 101 (129)
Q Consensus 85 ~~fCp~CG~~~tL~rv~ 101 (129)
+..||.||.. .++|++
T Consensus 26 ky~C~fCgk~-~vkR~a 41 (72)
T 3jyw_9 26 RYDCSFCGKK-TVKRGA 41 (72)
T ss_dssp CBCCSSCCSS-CBSBCS
T ss_pred CccCCCCCCc-eeEecC
Confidence 4567777766 666644
No 88
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=51.14 E-value=7.1 Score=29.35 Aligned_cols=43 Identities=14% Similarity=0.289 Sum_probs=25.6
Q ss_pred eEEEEccCcccccc--ccCccccCCCCCC-CceeE--EEEEe-CCCceE
Q 032998 68 RWILKCHACYTITA--EIGRIFCPKCGNG-GTLRK--VAVTV-GENGIV 110 (129)
Q Consensus 68 ~W~~rC~~C~k~~~--~~~~~fCp~CG~~-~tL~r--v~v~v-~~~G~~ 110 (129)
-|=..|+.|.|.-. ....-+|++||.. ..-.| +++.+ |..|.+
T Consensus 40 ~~Y~ACp~CnKKV~~~~~g~~~CekC~~~~~~~~RYil~~~i~D~TG~~ 88 (172)
T 3u50_C 40 LYYYRCTCQGKSVLKYHGDSFFCESCQQFINPQVHLMLRAFVQDSTGTI 88 (172)
T ss_dssp CEEEECTTSCCCEEEETTTEEEETTTTEECCCEEEECEEEEEEETTEEE
T ss_pred EEehhchhhCCEeeeCCCCeEECCCCCCCCCceEEEEEEEEEEeCCCCE
Confidence 45678999996543 2335689999962 12222 33333 455665
No 89
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=51.05 E-value=9.2 Score=30.16 Aligned_cols=14 Identities=14% Similarity=0.577 Sum_probs=11.3
Q ss_pred eEEEEccCcccccc
Q 032998 68 RWILKCHACYTITA 81 (129)
Q Consensus 68 ~W~~rC~~C~k~~~ 81 (129)
-+..+|..|++.+.
T Consensus 132 ~~~~~C~~C~~~~~ 145 (273)
T 3riy_A 132 LFKTRCTSCGVVAE 145 (273)
T ss_dssp EEEEEETTTCCEEE
T ss_pred CCeeEcCCCCCccc
Confidence 56789999998763
No 90
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=50.85 E-value=7.8 Score=26.34 Aligned_cols=26 Identities=27% Similarity=0.606 Sum_probs=19.4
Q ss_pred EEEEccCcccccc---c-cCccccCCCCCC
Q 032998 69 WILKCHACYTITA---E-IGRIFCPKCGNG 94 (129)
Q Consensus 69 W~~rC~~C~k~~~---~-~~~~fCp~CG~~ 94 (129)
..-+|++|+++.- . .+...|..||..
T Consensus 33 m~VkCp~C~~~q~VFSha~t~V~C~~Cg~~ 62 (82)
T 3u5c_b 33 LDVKCPGCLNITTVFSHAQTAVTCESCSTI 62 (82)
T ss_dssp EEEECTTSCSCEEEESBCSSCCCCSSSCCC
T ss_pred EEEECCCCCCeeEEEecCCeEEEccccCCE
Confidence 4578999997653 2 236889999985
No 91
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=50.29 E-value=5.2 Score=29.22 Aligned_cols=38 Identities=24% Similarity=0.286 Sum_probs=21.9
Q ss_pred HHHHHHHHhCcee------ecCCCCcceeeeeEEEEccCccccc
Q 032998 43 AMQNVILQMGLRL------LAPGGMQIRQLHRWILKCHACYTIT 80 (129)
Q Consensus 43 amQNVl~~lGL~~------~s~~g~~I~~~k~W~~rC~~C~k~~ 80 (129)
.+|++|...=-++ -+++...+++-+.|.++|.|||...
T Consensus 90 ~i~~~L~~yI~~yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~~ 133 (138)
T 1nee_A 90 LINERIEDYVNKFVICHECNRPDTRIIREGRISLLKCEACGAKA 133 (138)
T ss_dssp HHHHHHHHHHTHHHHHTCCSSCSSCCEEETTTTEEECSTTSCCC
T ss_pred HHHHHHHHHHhhEEECCCCCCcCcEEEEcCCeEEEEccCCCCCc
Confidence 3666665432222 2566666666667777777777543
No 92
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=49.21 E-value=7.6 Score=31.63 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=20.2
Q ss_pred EEEccCccccccccCccccCCCCCC
Q 032998 70 ILKCHACYTITAEIGRIFCPKCGNG 94 (129)
Q Consensus 70 ~~rC~~C~k~~~~~~~~fCp~CG~~ 94 (129)
.+.|.-|+.... ..+.-||.||+.
T Consensus 208 ~l~Cs~C~t~W~-~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 208 YLSCSLCACEWH-YVRIKCSHCEES 231 (309)
T ss_dssp EEEETTTCCEEE-CCTTSCSSSCCC
T ss_pred EEEeCCCCCEEe-ecCcCCcCCCCC
Confidence 589999998764 458889999996
No 93
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=48.83 E-value=8.2 Score=26.17 Aligned_cols=26 Identities=31% Similarity=0.639 Sum_probs=19.2
Q ss_pred EEEEccCcccccc---c-cCccccCCCCCC
Q 032998 69 WILKCHACYTITA---E-IGRIFCPKCGNG 94 (129)
Q Consensus 69 W~~rC~~C~k~~~---~-~~~~fCp~CG~~ 94 (129)
..-+|++|+++.- . .+...|..||..
T Consensus 31 m~VkCp~C~n~q~VFShA~t~V~C~~Cg~~ 60 (81)
T 2xzm_6 31 MDVKCAQCQNIQMIFSNAQSTIICEKCSAI 60 (81)
T ss_dssp EEEECSSSCCEEEEETTCSSCEECSSSCCE
T ss_pred EEeECCCCCCeeEEEecCccEEEccCCCCE
Confidence 3468999997653 2 236889999985
No 94
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=48.65 E-value=4.4 Score=34.40 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=3.1
Q ss_pred eeeEEEEccCcccccc----c-------cCccccCCCCCC
Q 032998 66 LHRWILKCHACYTITA----E-------IGRIFCPKCGNG 94 (129)
Q Consensus 66 ~k~W~~rC~~C~k~~~----~-------~~~~fCp~CG~~ 94 (129)
..+|++||+.|..... . .....||.||.+
T Consensus 333 ~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~ 372 (441)
T 3e20_C 333 MIRYEFKNSEGNPVITYMTKEQEEKDSTNSFLLDKDTGAE 372 (441)
T ss_dssp CEEC----------CCEECSCTTTCCC-------------
T ss_pred cceeEEECCCCceEEEecCccccccccccccccCcccCcc
Confidence 4578899999963321 1 112379999996
No 95
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=48.04 E-value=9.4 Score=31.28 Aligned_cols=26 Identities=19% Similarity=0.338 Sum_probs=18.3
Q ss_pred eeEEEEccCccccccc---------cCccccCCCC
Q 032998 67 HRWILKCHACYTITAE---------IGRIFCPKCG 92 (129)
Q Consensus 67 k~W~~rC~~C~k~~~~---------~~~~fCp~CG 92 (129)
.-+..+|..|++.+.. .....||.||
T Consensus 158 sl~~~~C~~C~~~~~~~~~~~~~~~~~~P~Cp~C~ 192 (354)
T 2hjh_A 158 SFATATCVTCHWNLPGERIFNKIRNLELPLCPYCY 192 (354)
T ss_dssp EEEEEEETTTCCEEEGGGGHHHHHTTCCCBCTTTH
T ss_pred CcCccccCCCCCcCCHHHHHHHhhccCCCcCcccc
Confidence 3567899999976532 1235799998
No 96
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=48.02 E-value=8.9 Score=26.25 Aligned_cols=25 Identities=32% Similarity=0.838 Sum_probs=18.7
Q ss_pred EEEccCcccccc---c-cCccccCCCCCC
Q 032998 70 ILKCHACYTITA---E-IGRIFCPKCGNG 94 (129)
Q Consensus 70 ~~rC~~C~k~~~---~-~~~~fCp~CG~~ 94 (129)
.-+|++|++++- . .+...|..||..
T Consensus 36 ~VkCp~C~~~~~VFShA~t~V~C~~Cgtv 64 (86)
T 3iz6_X 36 DVKCQGCFNITTVFSHSQTVVVCPGCQTV 64 (86)
T ss_dssp EEECTTTCCEEEEETTCSSCCCCSSSCCC
T ss_pred EEECCCCCCeeEEEecCCcEEEccCCCCE
Confidence 368999997653 2 236889999985
No 97
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=47.84 E-value=11 Score=23.80 Aligned_cols=28 Identities=21% Similarity=0.489 Sum_probs=20.9
Q ss_pred EEEEccCccccccccCccccCCCCCCCcee
Q 032998 69 WILKCHACYTITAEIGRIFCPKCGNGGTLR 98 (129)
Q Consensus 69 W~~rC~~C~k~~~~~~~~fCp~CG~~~tL~ 98 (129)
-++.|.-|+.--+. .-.-|-.||+. .|+
T Consensus 18 ~k~ICrkC~ARnp~-~A~~CRKCg~~-~LR 45 (56)
T 2ayj_A 18 LKKVCRKCGALNPI-RATKCRRCHST-NLR 45 (56)
T ss_dssp CCEEETTTCCEECT-TCSSCTTTCCC-CEE
T ss_pred chhhhccccCcCCc-ccccccCCCCC-CCC
Confidence 36889999965443 34779999997 776
No 98
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=47.74 E-value=5.8 Score=23.30 Aligned_cols=25 Identities=24% Similarity=0.675 Sum_probs=17.4
Q ss_pred EEEccCcccccccc----------CccccCCCCCC
Q 032998 70 ILKCHACYTITAEI----------GRIFCPKCGNG 94 (129)
Q Consensus 70 ~~rC~~C~k~~~~~----------~~~fCp~CG~~ 94 (129)
-+.|.-|++.|... ....|+.||..
T Consensus 14 ~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~ 48 (62)
T 1vd4_A 14 SFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTE 48 (62)
T ss_dssp EEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCB
T ss_pred CccCCCCCchhccHHHhHhhcCCCCCEECCCCCCc
Confidence 47899999865321 12469999985
No 99
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=46.26 E-value=5.6 Score=29.42 Aligned_cols=24 Identities=21% Similarity=0.645 Sum_probs=18.0
Q ss_pred EEccCcccc--ccccCccccCCCCCC
Q 032998 71 LKCHACYTI--TAEIGRIFCPKCGNG 94 (129)
Q Consensus 71 ~rC~~C~k~--~~~~~~~fCp~CG~~ 94 (129)
-.|+.|.-. |.+-....||.||+.
T Consensus 28 P~CP~C~seytYeDg~l~vCPeC~hE 53 (138)
T 2akl_A 28 PPCPQCNSEYTYEDGALLVCPECAHE 53 (138)
T ss_dssp CCCTTTCCCCCEECSSSEEETTTTEE
T ss_pred CCCCCCCCcceEecCCeEECCccccc
Confidence 469999844 455557899999975
No 100
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=46.24 E-value=5.7 Score=27.10 Aligned_cols=11 Identities=36% Similarity=0.809 Sum_probs=9.7
Q ss_pred CccccCCCCCC
Q 032998 84 GRIFCPKCGNG 94 (129)
Q Consensus 84 ~~~fCp~CG~~ 94 (129)
.+.||+.||.+
T Consensus 66 ~r~FC~~CGs~ 76 (118)
T 3fac_A 66 KHWFCRTCGIY 76 (118)
T ss_dssp EEEEETTTCCE
T ss_pred eeEECCCCCcc
Confidence 47899999997
No 101
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=46.07 E-value=3.8 Score=37.27 Aligned_cols=23 Identities=30% Similarity=0.694 Sum_probs=16.3
Q ss_pred EccCccccccccC-ccc------cCCCCCC
Q 032998 72 KCHACYTITAEIG-RIF------CPKCGNG 94 (129)
Q Consensus 72 rC~~C~k~~~~~~-~~f------Cp~CG~~ 94 (129)
.|..|.+.|.++. +.| ||.||=.
T Consensus 163 mC~~C~~EY~dp~~RRfhAqp~aC~~CGP~ 192 (761)
T 3vth_A 163 MCEKCSREYHDPHDRRFHAQPVACFDCGPS 192 (761)
T ss_dssp CCHHHHHHHTCTTSTTTTCTTCCCTTTSCC
T ss_pred CCHHHHHHhcCcccccccCCCCcCCccCCe
Confidence 4666666676643 556 9999986
No 102
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=45.87 E-value=8.7 Score=25.75 Aligned_cols=8 Identities=25% Similarity=0.634 Sum_probs=4.4
Q ss_pred EEccCccc
Q 032998 71 LKCHACYT 78 (129)
Q Consensus 71 ~rC~~C~k 78 (129)
+.|+.|++
T Consensus 28 y~Cp~CG~ 35 (83)
T 1vq8_Z 28 HACPNCGE 35 (83)
T ss_dssp EECSSSCC
T ss_pred CcCCCCCC
Confidence 45555554
No 103
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=45.21 E-value=8.2 Score=20.59 Aligned_cols=11 Identities=18% Similarity=0.359 Sum_probs=7.9
Q ss_pred EEccCcccccc
Q 032998 71 LKCHACYTITA 81 (129)
Q Consensus 71 ~rC~~C~k~~~ 81 (129)
+.|.-|++.+.
T Consensus 11 ~~C~~C~k~f~ 21 (45)
T 2epq_A 11 YSCPVCGLRFK 21 (45)
T ss_dssp SEETTTTEECS
T ss_pred CcCCCCCcccC
Confidence 56888887764
No 104
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=42.82 E-value=18 Score=20.26 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=11.3
Q ss_pred cccCCCCCCCceeEEEEEeCCCceE
Q 032998 86 IFCPKCGNGGTLRKVAVTVGENGIV 110 (129)
Q Consensus 86 ~fCp~CG~~~tL~rv~v~v~~~G~~ 110 (129)
..|+.|||- |.+..+.+|.+
T Consensus 7 Y~C~~CGni-----vev~~~g~~~l 26 (36)
T 1dxg_A 7 YKCELCGQV-----VKVLEEGGGTL 26 (36)
T ss_dssp EECTTTCCE-----EEEEECCSSCE
T ss_pred EEcCCCCcE-----EEEEeCCCcCE
Confidence 458888875 34434555443
No 105
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=42.34 E-value=19 Score=24.33 Aligned_cols=24 Identities=21% Similarity=0.438 Sum_probs=14.8
Q ss_pred cccCCCCCCCce--eEEEEEeCCCceE
Q 032998 86 IFCPKCGNGGTL--RKVAVTVGENGIV 110 (129)
Q Consensus 86 ~fCp~CG~~~tL--~rv~v~v~~~G~~ 110 (129)
..||.||.. .+ ....++++=.|..
T Consensus 3 M~Cp~Cg~~-~~~~~~~~~~~~~kg~~ 28 (133)
T 3o9x_A 3 MKCPVCHQG-EMVSGIKDIPYTFRGRK 28 (133)
T ss_dssp CBCTTTSSS-BEEEEEEEEEEEETTEE
T ss_pred cCCCcCCCC-ceeeceEEEEEEECCEE
Confidence 469999986 45 3344555555544
No 106
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=42.15 E-value=15 Score=22.22 Aligned_cols=19 Identities=42% Similarity=0.768 Sum_probs=12.9
Q ss_pred ccccCCCCCCCceeEEEEEe
Q 032998 85 RIFCPKCGNGGTLRKVAVTV 104 (129)
Q Consensus 85 ~~fCp~CG~~~tL~rv~v~v 104 (129)
..-||+||+. .+.-..+-.
T Consensus 15 ~~~Cp~Cg~~-~~~~~q~Q~ 33 (57)
T 1qyp_A 15 KITCPKCGND-TAYWWEMQT 33 (57)
T ss_dssp ECCCTTTCCS-EEEEEEECC
T ss_pred EeECCCCCCC-EEEEEEeec
Confidence 4569999997 665545443
No 107
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=41.93 E-value=9.4 Score=30.83 Aligned_cols=14 Identities=43% Similarity=1.203 Sum_probs=10.7
Q ss_pred cccCCCCCCCceeEE
Q 032998 86 IFCPKCGNGGTLRKV 100 (129)
Q Consensus 86 ~fCp~CG~~~tL~rv 100 (129)
.+||.||+. .|.+.
T Consensus 35 ~yCPnCG~~-~l~~f 48 (257)
T 4esj_A 35 SYCPNCGNN-PLNHF 48 (257)
T ss_dssp CCCTTTCCS-SCEEC
T ss_pred CcCCCCCCh-hhhhc
Confidence 679999996 67653
No 108
>2ftc_P Mitochondrial ribosomal protein L33 isoform A, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_P
Probab=41.93 E-value=8.8 Score=23.58 Aligned_cols=31 Identities=10% Similarity=-0.105 Sum_probs=20.5
Q ss_pred eEEEEccCcccccc------c---cC-ccccCCCCCCCceeE
Q 032998 68 RWILKCHACYTITA------E---IG-RIFCPKCGNGGTLRK 99 (129)
Q Consensus 68 ~W~~rC~~C~k~~~------~---~~-~~fCp~CG~~~tL~r 99 (129)
.-.|.|.+|..... . +. +.|||.|... ||-+
T Consensus 9 ~i~L~ct~c~~~~Y~t~Knr~~~rLelkKycp~~~kh-tlhk 49 (52)
T 2ftc_P 9 LVRMVSEAGTGFCFNTKRNRLREKLTLLHYDPVVKQR-VLFV 49 (52)
T ss_pred EEEEEEecCCCeeEEEecCCCCceeEEEccCCCCCce-EeEE
Confidence 45689999964221 1 11 5799999997 7754
No 109
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=40.67 E-value=13 Score=28.74 Aligned_cols=36 Identities=14% Similarity=0.295 Sum_probs=24.5
Q ss_pred CCCcceeeeeEEEEccCcccccc------------ccCccccCCCCCC
Q 032998 59 GGMQIRQLHRWILKCHACYTITA------------EIGRIFCPKCGNG 94 (129)
Q Consensus 59 ~g~~I~~~k~W~~rC~~C~k~~~------------~~~~~fCp~CG~~ 94 (129)
+..+-+....+.++|++|+..+. .....-||+|+..
T Consensus 11 DeeRfr~c~~l~l~Cp~C~~~~~F~gv~~~~~~~~~~sg~~C~~C~~~ 58 (206)
T 3flo_B 11 DVERFKDTVTLELSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQL 58 (206)
T ss_dssp CTTTTTTCCCEEEECTTTCCEEEECSSSCCSSEEEETTEEEETTTCCB
T ss_pred HHHHhCcCceeEEECCCCCCccCCCCcccCCCcccccccccCCCCCCc
Confidence 34566778899999999985321 1123559999874
No 110
>3j21_j 50S ribosomal protein L44E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=40.45 E-value=11 Score=26.13 Aligned_cols=18 Identities=39% Similarity=0.838 Sum_probs=14.4
Q ss_pred ccccCCCCCCCceeEEEEE
Q 032998 85 RIFCPKCGNGGTLRKVAVT 103 (129)
Q Consensus 85 ~~fCp~CG~~~tL~rv~v~ 103 (129)
+-|||.|+.. |+.+|+-+
T Consensus 8 ~tyC~~C~kH-t~HkVt~y 25 (94)
T 3j21_j 8 RTYCPFCKKH-TIHKVERV 25 (94)
T ss_dssp EECCTTTTSC-EEEEECCC
T ss_pred eecCcCCCCC-cceEEEEE
Confidence 5799999997 88877753
No 111
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=40.15 E-value=3.9 Score=28.44 Aligned_cols=26 Identities=27% Similarity=0.830 Sum_probs=18.7
Q ss_pred EccCccccccccCccccCCCCCCCceeE
Q 032998 72 KCHACYTITAEIGRIFCPKCGNGGTLRK 99 (129)
Q Consensus 72 rC~~C~k~~~~~~~~fCp~CG~~~tL~r 99 (129)
.|..|+.+......+-||.|+.+ .+|
T Consensus 45 vCrpCyEYErkeG~q~CpqCktr--Ykr 70 (93)
T 1weo_A 45 ACRPCYEYERREGTQNCPQCKTR--YKR 70 (93)
T ss_dssp CCHHHHHHHHHTSCSSCTTTCCC--CCC
T ss_pred hhHHHHHHHHhccCccccccCCc--ccc
Confidence 47777766555557899999987 543
No 112
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=40.09 E-value=17 Score=32.74 Aligned_cols=49 Identities=27% Similarity=0.466 Sum_probs=27.9
Q ss_pred HHHhCcee-----ecCCCCcceeeeeEEEEccCccccccccCccccCCCCCCCceeE
Q 032998 48 ILQMGLRL-----LAPGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNGGTLRK 99 (129)
Q Consensus 48 l~~lGL~~-----~s~~g~~I~~~k~W~~rC~~C~k~~~~~~~~fCp~CG~~~tL~r 99 (129)
..++||.+ +.-.|+.|-++-.-+..=..=......++ ..||.||++ |.|
T Consensus 364 i~~~di~iGD~V~V~rAGdvIP~i~~vv~~~r~~~~~~~~~P-~~CP~Cgs~--l~~ 417 (671)
T 2owo_A 364 IERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFP-THCPVCGSD--VER 417 (671)
T ss_dssp HHHHTCCBTCEEEEEEETTTEEEEEEECGGGCCSSCBCCCCC-SBCTTTCCB--EEE
T ss_pred HHHcCCCCCCEEEEEECCCcccceeccccccCCCCCccCcCC-CCCCCCCCE--eEE
Confidence 56777775 33347888887766532111111111222 679999998 544
No 113
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=39.50 E-value=5.8 Score=29.39 Aligned_cols=8 Identities=38% Similarity=1.011 Sum_probs=4.4
Q ss_pred ccCCCCCC
Q 032998 87 FCPKCGNG 94 (129)
Q Consensus 87 fCp~CG~~ 94 (129)
-|..||+.
T Consensus 127 ~C~ACGa~ 134 (148)
T 2d74_B 127 KCEACGAE 134 (148)
T ss_dssp CCSSSCCC
T ss_pred EecCCCCC
Confidence 35556554
No 114
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.87 E-value=11 Score=28.06 Aligned_cols=25 Identities=16% Similarity=0.052 Sum_probs=14.8
Q ss_pred cCCCCcce--eeeeEEEEccCcccccc
Q 032998 57 APGGMQIR--QLHRWILKCHACYTITA 81 (129)
Q Consensus 57 s~~g~~I~--~~k~W~~rC~~C~k~~~ 81 (129)
+++...++ +-+.|.++|.||+...+
T Consensus 111 sPdT~L~~~~~~r~~~l~C~ACGa~~~ 137 (157)
T 2e9h_A 111 NPETDLHVNPKKQTIGNSCKACGYRGM 137 (157)
T ss_dssp CSCCEEEEETTTTEEEEECSSSCCEEE
T ss_pred CCccEEEEecCCCEEEEEccCCCCCCc
Confidence 45555554 45667777777775443
No 115
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=38.57 E-value=19 Score=19.85 Aligned_cols=22 Identities=23% Similarity=0.641 Sum_probs=16.6
Q ss_pred EccCccccccccCccccCCCCCC
Q 032998 72 KCHACYTITAEIGRIFCPKCGNG 94 (129)
Q Consensus 72 rC~~C~k~~~~~~~~fCp~CG~~ 94 (129)
.|++|+.+... .+..|-.||.+
T Consensus 8 ~C~~C~~~Nfa-~R~~C~~C~~p 29 (33)
T 2k1p_A 8 QCKTCSNVNWA-RRSECNMCNTP 29 (33)
T ss_dssp BCSSSCCBCCT-TCSBCSSSCCB
T ss_pred ccCCCCCcccc-ccccccccCCc
Confidence 48889877553 36889999876
No 116
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=38.55 E-value=9.1 Score=24.68 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=11.2
Q ss_pred EEEccCcccc-cc--ccCccccCCCCCC
Q 032998 70 ILKCHACYTI-TA--EIGRIFCPKCGNG 94 (129)
Q Consensus 70 ~~rC~~C~k~-~~--~~~~~fCp~CG~~ 94 (129)
+++|+.|+.- .. ......|+.||..
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~ 35 (68)
T 2hf1_A 8 ILVCPLCKGPLVFDKSKDELICKGDRLA 35 (68)
T ss_dssp ECBCTTTCCBCEEETTTTEEEETTTTEE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcE
Confidence 3456666631 11 1123456666543
No 117
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=37.54 E-value=33 Score=26.75 Aligned_cols=30 Identities=20% Similarity=0.644 Sum_probs=20.2
Q ss_pred eeeeEEEEccCccccccc-------cCccccCCCCCC
Q 032998 65 QLHRWILKCHACYTITAE-------IGRIFCPKCGNG 94 (129)
Q Consensus 65 ~~k~W~~rC~~C~k~~~~-------~~~~fCp~CG~~ 94 (129)
++..=.++|..|+....- ..-..||.|+++
T Consensus 129 ~~~~~~f~C~~C~~~~~v~~~~~~~~~P~~Cp~C~~~ 165 (279)
T 1ltl_A 129 RIVKAVFECRGCMRHHAVTQSTNMITEPSLCSECGGR 165 (279)
T ss_dssp EEEEEEEEETTTCCEEEEECSSSSCCCCSCCTTTCCC
T ss_pred EEEEEEEEcCCCCCEEEEEecCCcccCCCcCCCCCCC
Confidence 455566999999955321 112469999997
No 118
>1vq8_3 50S ribosomal protein L44E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.3 PDB: 1jj2_2 1k73_4* 1k8a_4* 1k9m_4* 1kc8_4* 1kd1_4* 1kqs_2* 1m1k_4* 1m90_4* 1n8r_4* 1nji_4* 1q7y_4* 1q81_4* 1q82_4* 1q86_4* 1qvf_2 1qvg_2 1s72_3* 1vq4_3* 1vq5_3* ...
Probab=37.16 E-value=10 Score=26.16 Aligned_cols=18 Identities=22% Similarity=0.678 Sum_probs=14.9
Q ss_pred ccccCCCCCCCceeEEEEE
Q 032998 85 RIFCPKCGNGGTLRKVAVT 103 (129)
Q Consensus 85 ~~fCp~CG~~~tL~rv~v~ 103 (129)
+-|||.|+.. |..+|+-+
T Consensus 8 ~tyCp~C~kH-t~HkVtqy 25 (92)
T 1vq8_3 8 NTYCPHCNEH-QEHEVEKV 25 (92)
T ss_dssp EEEETTTTEE-EEEEEEEC
T ss_pred cccCCCCCCC-ccEEEEEE
Confidence 5799999997 88888764
No 119
>1x6m_A GFA, glutathione-dependent formaldehyde-activating ENZ; Zn-enzyme, 3_10 helix, lyase; 2.35A {Paracoccus denitrificans} SCOP: b.88.1.4 PDB: 1xa8_A*
Probab=35.66 E-value=11 Score=28.15 Aligned_cols=11 Identities=36% Similarity=0.724 Sum_probs=9.7
Q ss_pred CccccCCCCCC
Q 032998 84 GRIFCPKCGNG 94 (129)
Q Consensus 84 ~~~fCp~CG~~ 94 (129)
.+.||+.||.+
T Consensus 97 ~r~FC~~CGs~ 107 (196)
T 1x6m_A 97 QRHRCRDCGVH 107 (196)
T ss_dssp EEEEETTTCCE
T ss_pred eeEECCCCCCc
Confidence 47899999997
No 120
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=35.64 E-value=15 Score=31.97 Aligned_cols=25 Identities=20% Similarity=0.281 Sum_probs=17.4
Q ss_pred eEEEEccCcccccccc---------CccccCCCC
Q 032998 68 RWILKCHACYTITAEI---------GRIFCPKCG 92 (129)
Q Consensus 68 ~W~~rC~~C~k~~~~~---------~~~fCp~CG 92 (129)
-+..+|..|++.+... ....||.||
T Consensus 297 l~~~~C~~Cg~~~~~e~i~~~i~~~~~P~Cp~Cg 330 (492)
T 4iao_A 297 FATATCVTCHWNLPGERIFNKIRNLELPLCPYCY 330 (492)
T ss_dssp TTEEEETTTCCEEEGGGGHHHHHTTCCCBCTTTH
T ss_pred cceeecCCCCCcCCHHHHHHHHhccCCCCCcccc
Confidence 3567999999765421 135799998
No 121
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=35.31 E-value=18 Score=27.92 Aligned_cols=29 Identities=7% Similarity=-0.237 Sum_probs=19.9
Q ss_pred EEEccCccccccc---cC--ccccCCCCCCCceeE
Q 032998 70 ILKCHACYTITAE---IG--RIFCPKCGNGGTLRK 99 (129)
Q Consensus 70 ~~rC~~C~k~~~~---~~--~~fCp~CG~~~tL~r 99 (129)
+..|+.|+++|.. ++ ...|+.||.+ .+.|
T Consensus 131 R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~-L~~R 164 (230)
T 3gmt_A 131 RRTHPASGRTYHVKFNPPKVEGKDDVTGEP-LVQR 164 (230)
T ss_dssp EEEETTTTEEEETTTBCCSSTTBCTTTCCB-CBCC
T ss_pred CCcccccCCcccccCCCCCccCcCCCccCc-cccC
Confidence 4569999988742 22 3569999998 4443
No 122
>2kn0_A FN14; tweak, TNF receptor, CRD, mutagenesis, apoptosis; NMR {Xenopus laevis}
Probab=35.09 E-value=23 Score=22.99 Aligned_cols=21 Identities=24% Similarity=0.706 Sum_probs=16.3
Q ss_pred EEccCccccccccCccccCCCCCC
Q 032998 71 LKCHACYTITAEIGRIFCPKCGNG 94 (129)
Q Consensus 71 ~rC~~C~k~~~~~~~~fCp~CG~~ 94 (129)
+-|..|..- +.-+||..|.++
T Consensus 19 M~Cs~C~~~---p~SdfC~~cps~ 39 (66)
T 2kn0_A 19 MECSVCKNS---EKSDFCQNCPSK 39 (66)
T ss_dssp EESTTCSSC---CCCTTTTTCCCC
T ss_pred cccCcCCCC---CCcccccCCCCC
Confidence 778888853 335999999887
No 123
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=34.87 E-value=21 Score=23.77 Aligned_cols=28 Identities=21% Similarity=0.492 Sum_probs=19.4
Q ss_pred EEEccCcccccccc-----CccccCCCCCCCcee
Q 032998 70 ILKCHACYTITAEI-----GRIFCPKCGNGGTLR 98 (129)
Q Consensus 70 ~~rC~~C~k~~~~~-----~~~fCp~CG~~~tL~ 98 (129)
...|++|++....+ ....|..||.+ ...
T Consensus 5 ~~~c~~c~~~n~~p~~~~~~~~~~~~~~~~-~~~ 37 (148)
T 3p2a_A 5 NTVCTACMATNRLPEERIDDGAKCGRCGHS-LFD 37 (148)
T ss_dssp EEECTTTCCEEEEESSCSCSCCBCTTTCCB-TTC
T ss_pred EEECcccccccCCCCcccccCCcchhcCCc-ccc
Confidence 57899999865321 24569999997 443
No 124
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=34.40 E-value=23 Score=19.37 Aligned_cols=22 Identities=27% Similarity=0.714 Sum_probs=16.9
Q ss_pred EccCccccccccCccccCCCCCC
Q 032998 72 KCHACYTITAEIGRIFCPKCGNG 94 (129)
Q Consensus 72 rC~~C~k~~~~~~~~fCp~CG~~ 94 (129)
.|..|+..... .+..|-.||.+
T Consensus 7 ~C~~C~~~Nfa-~r~~C~~C~~p 28 (32)
T 2lk0_A 7 LCNKCCLNNFR-KRLKCFRCGAD 28 (32)
T ss_dssp ECTTTCCEEET-TCCBCTTTCCB
T ss_pred CcCcCcCCcCh-hcceecCCCCc
Confidence 58889976543 47889999976
No 125
>4a18_C 60S ribosomal protein L36A; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_C 4a1b_C 4a1d_C
Probab=34.03 E-value=12 Score=26.49 Aligned_cols=18 Identities=33% Similarity=0.687 Sum_probs=14.7
Q ss_pred ccccCCCCCCCceeEEEEE
Q 032998 85 RIFCPKCGNGGTLRKVAVT 103 (129)
Q Consensus 85 ~~fCp~CG~~~tL~rv~v~ 103 (129)
+-|||.|+.. |+.+|+-+
T Consensus 9 ~tyCpkC~kH-t~HkVtqy 26 (109)
T 4a18_C 9 KTYCKKCNSH-TNHKVSQY 26 (109)
T ss_dssp EEEETTTTEE-EEEEEEEC
T ss_pred eecCcCCCCC-cceEEEEe
Confidence 5789999996 88888764
No 126
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=33.79 E-value=9.2 Score=24.80 Aligned_cols=8 Identities=13% Similarity=0.247 Sum_probs=4.4
Q ss_pred cccCCCCC
Q 032998 86 IFCPKCGN 93 (129)
Q Consensus 86 ~fCp~CG~ 93 (129)
..|+.||.
T Consensus 27 LiC~~cg~ 34 (70)
T 2js4_A 27 LVCNADRL 34 (70)
T ss_dssp EEETTTTE
T ss_pred EEcCCCCc
Confidence 45666654
No 127
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=33.69 E-value=14 Score=22.35 Aligned_cols=10 Identities=30% Similarity=0.660 Sum_probs=8.4
Q ss_pred ccccCCCCCC
Q 032998 85 RIFCPKCGNG 94 (129)
Q Consensus 85 ~~fCp~CG~~ 94 (129)
...||+||++
T Consensus 9 ~~~Cp~Cg~~ 18 (50)
T 1tfi_A 9 LFTCGKCKKK 18 (50)
T ss_dssp CSCCSSSCSS
T ss_pred ccCCCCCCCC
Confidence 3579999997
No 128
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=33.39 E-value=9.8 Score=24.54 Aligned_cols=8 Identities=0% Similarity=0.148 Sum_probs=3.8
Q ss_pred cccCCCCC
Q 032998 86 IFCPKCGN 93 (129)
Q Consensus 86 ~fCp~CG~ 93 (129)
..|+.||.
T Consensus 27 LiC~~cg~ 34 (68)
T 2jr6_A 27 LWSRQAKL 34 (68)
T ss_dssp EEETTTTE
T ss_pred EEcCCCCc
Confidence 34555543
No 129
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=33.08 E-value=44 Score=29.67 Aligned_cols=52 Identities=17% Similarity=0.081 Sum_probs=31.2
Q ss_pred eEeech----HHHHHHHHHhCceeecCCCCcceeeeeEEEEccCccccccccC-ccccCCCCC
Q 032998 36 ACITGD----YAMQNVILQMGLRLLAPGGMQIRQLHRWILKCHACYTITAEIG-RIFCPKCGN 93 (129)
Q Consensus 36 a~~TdD----yamQNVl~~lGL~~~s~~g~~I~~~k~W~~rC~~C~k~~~~~~-~~fCp~CG~ 93 (129)
-.-|+| -++|.+..+|= -.|. |-+...-++.|+.|++...+.. ...||.||.
T Consensus 92 ~~rT~d~~~~~~v~~~f~~L~-----~kG~-iY~~~~~v~y~~~~~tfl~d~~v~gtcP~c~~ 148 (722)
T 1rqg_A 92 FGRTELPIHYKLSQEFFLKAY-----ENGH-LVKKVTKQAYCEHDKMFLPDRFVIGTCPYCGA 148 (722)
T ss_dssp EEETTSHHHHHHHHHHHHHHH-----HTTC-EEEEEEEEEEBTTTTBCCCGGGCCSBCSSSCC
T ss_pred CeeCCCHHHHHHHHHHHHHHH-----HCCC-EEecceeeeecCCCCcCcchhhcccccCccCC
Confidence 345665 25677776651 1233 5555677899999987655432 234666664
No 130
>3qqc_A DNA-directed RNA polymerase subunit B, DNA-direct polymerase subunit A', DNA-directed...; transcription, fusion protein, chimera protein, multiprotein; 3.30A {Pyrococcus furiosus}
Probab=32.83 E-value=42 Score=28.51 Aligned_cols=35 Identities=31% Similarity=0.732 Sum_probs=24.1
Q ss_pred eEEEEccCccccccc---cCccccCCCCCCCceeEEEE
Q 032998 68 RWILKCHACYTITAE---IGRIFCPKCGNGGTLRKVAV 102 (129)
Q Consensus 68 ~W~~rC~~C~k~~~~---~~~~fCp~CG~~~tL~rv~v 102 (129)
.-++.|..||.+... .....|+.|++...+.+|.+
T Consensus 3 ~~~~VC~~CG~~~~~~~~~~~~~C~~C~~~~~i~~v~i 40 (436)
T 3qqc_A 3 TEVWVCENCGHIALEDKRRRRVYCPVCGEEERISKVEM 40 (436)
T ss_dssp EEEEEETTTCCBCEEETTTTEEECTTTCCSSSEEEEEE
T ss_pred eEEEEeCCCCceeeeccccCccCCCCCCCCCeEEEEEc
Confidence 446799999986431 11367999998656777654
No 131
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=32.32 E-value=10 Score=24.48 Aligned_cols=8 Identities=0% Similarity=-0.031 Sum_probs=4.5
Q ss_pred cccCCCCC
Q 032998 86 IFCPKCGN 93 (129)
Q Consensus 86 ~fCp~CG~ 93 (129)
..|+.||.
T Consensus 29 LvC~~c~~ 36 (67)
T 2jny_A 29 LVNERLNL 36 (67)
T ss_dssp EEETTTTE
T ss_pred EEcCCCCc
Confidence 45666654
No 132
>1r8o_B STI, kunitz trypsin inhibitor; kunitz (STI) trypsin inhibitor, beta-trefoil fold, hydrolase inhibitor; 1.83A {Copaifera langsdorffii} SCOP: b.42.4.1
Probab=32.28 E-value=42 Score=21.72 Aligned_cols=23 Identities=9% Similarity=0.173 Sum_probs=17.3
Q ss_pred ccccCCCCCCCceeEEEEEeCCCceE
Q 032998 85 RIFCPKCGNGGTLRKVAVTVGENGIV 110 (129)
Q Consensus 85 ~~fCp~CG~~~tL~rv~v~v~~~G~~ 110 (129)
..|||.|+. . .-+=+.++++|+.
T Consensus 31 lv~CP~c~~--~-~diGI~~d~~g~r 53 (71)
T 1r8o_B 31 DVYSSSKGR--D-LDDGIEVNKKKEK 53 (71)
T ss_dssp EEEECTTSC--E-EEEEEEECTTSCE
T ss_pred EEECCCCCc--c-cceeEEEeCCCEE
Confidence 689999843 4 7788888888754
No 133
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=31.92 E-value=8.1 Score=35.08 Aligned_cols=23 Identities=30% Similarity=0.660 Sum_probs=16.9
Q ss_pred EccCccccccccC-cc------ccCCCCCC
Q 032998 72 KCHACYTITAEIG-RI------FCPKCGNG 94 (129)
Q Consensus 72 rC~~C~k~~~~~~-~~------fCp~CG~~ 94 (129)
.|..|.+.|.++. +. -||.||=.
T Consensus 158 mC~~C~~EY~dp~dRRfhAqp~aC~~CGP~ 187 (772)
T 4g9i_A 158 MCDFCRSEYEDPLNRRYHAEPTACPVCGPS 187 (772)
T ss_dssp CCHHHHHHHHCSSSTTTTCTTCCCTTTSCC
T ss_pred CChhHHHHhCCCCCCCCcCCCCCCccCCce
Confidence 5888888877654 33 49999976
No 134
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=31.62 E-value=8.2 Score=34.62 Aligned_cols=23 Identities=35% Similarity=0.710 Sum_probs=18.0
Q ss_pred EccCccccccccC-c------cccCCCCCC
Q 032998 72 KCHACYTITAEIG-R------IFCPKCGNG 94 (129)
Q Consensus 72 rC~~C~k~~~~~~-~------~fCp~CG~~ 94 (129)
.|..|.+.|.++. + .-||.||=.
T Consensus 69 mC~~C~~EY~dp~dRRfHAqp~aCp~CGP~ 98 (657)
T 3ttc_A 69 LCPACDKEYRDPLDRRFHAQPVACPECGPY 98 (657)
T ss_dssp CCHHHHHHHHCTTSTTTTCTTCCCTTTSCC
T ss_pred CChHHHHHhCCCCCCcCcCCCCcCcccCcc
Confidence 5999998887753 3 359999986
No 135
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=31.28 E-value=12 Score=28.49 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=19.7
Q ss_pred EEccCcccccccc-CccccCCCCCCCceeEEEEE
Q 032998 71 LKCHACYTITAEI-GRIFCPKCGNGGTLRKVAVT 103 (129)
Q Consensus 71 ~rC~~C~k~~~~~-~~~fCp~CG~~~tL~rv~v~ 103 (129)
-+|.....+.+.. ....||.||.. -.||++--
T Consensus 170 A~c~~g~~m~~~~~~~m~cp~cg~~-E~RKva~~ 202 (209)
T 2nn6_I 170 AHSESGIQMVPISWCEMQCPKTHTK-EFRKVARV 202 (209)
T ss_dssp CBCSSSCBCEEEETTEEECTTTTCC-BCCCC---
T ss_pred EEcCCCCEEEEccCCEEECCCCCCE-EeeccCCC
Confidence 3687744444432 24779999998 78888753
No 136
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=31.03 E-value=14 Score=27.88 Aligned_cols=40 Identities=13% Similarity=0.052 Sum_probs=23.2
Q ss_pred HHHHHHHHHhCcee------ecCCCCcce--eeeeEEEEccCcccccc
Q 032998 42 YAMQNVILQMGLRL------LAPGGMQIR--QLHRWILKCHACYTITA 81 (129)
Q Consensus 42 yamQNVl~~lGL~~------~s~~g~~I~--~~k~W~~rC~~C~k~~~ 81 (129)
..||++|...=-++ -+++...++ +-+.|.++|.|||...+
T Consensus 83 ~~i~~~L~~yI~~YVlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~~~ 130 (170)
T 2g2k_A 83 NKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYRGM 130 (170)
T ss_dssp HHHHHHHHHHHHHHHSCTTTSSSCEEEEEETTTTEEEEEETTTCCCCC
T ss_pred HHHHHHHHHHHHHeEECCCCCCCccEEEEecCCCEEEEEccccCCccc
Confidence 45666665532222 255655555 45677788888876543
No 137
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=30.49 E-value=13 Score=30.28 Aligned_cols=25 Identities=32% Similarity=0.793 Sum_probs=16.8
Q ss_pred EEEccCccc----ccc--ccCccccCCCCCC
Q 032998 70 ILKCHACYT----ITA--EIGRIFCPKCGNG 94 (129)
Q Consensus 70 ~~rC~~C~k----~~~--~~~~~fCp~CG~~ 94 (129)
.++|+.|+. +.. .....+|..||--
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlV 51 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLV 51 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGTEEEETTTCBE
T ss_pred CCcCCCCCCCCCceeEECCCCcEEeCCCCCC
Confidence 457999995 212 2346899999964
No 138
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A {Pyrobaculum spherical virus}
Probab=30.23 E-value=69 Score=22.65 Aligned_cols=22 Identities=32% Similarity=0.721 Sum_probs=15.2
Q ss_pred cccCCCCCCCceeEEEEEeCCCceE
Q 032998 86 IFCPKCGNGGTLRKVAVTVGENGIV 110 (129)
Q Consensus 86 ~fCp~CG~~~tL~rv~v~v~~~G~~ 110 (129)
--||.||.. -.|++.-..+|..
T Consensus 53 akcprcgae---gsvsivetkngyk 74 (131)
T 2x5c_A 53 AKCPRCGAE---GSVSIVETKNGYK 74 (131)
T ss_dssp EECTTTSCE---EEEEEEECTTSCE
T ss_pred ccCCCCCCc---cceEEEEecCCcE
Confidence 349999987 4466666677754
No 139
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=29.96 E-value=23 Score=27.70 Aligned_cols=16 Identities=25% Similarity=0.615 Sum_probs=13.0
Q ss_pred ccccCCCCCCCceeEEEE
Q 032998 85 RIFCPKCGNGGTLRKVAV 102 (129)
Q Consensus 85 ~~fCp~CG~~~tL~rv~v 102 (129)
.+-||.||.+ ++++.+
T Consensus 234 g~pC~~CG~~--I~~~~~ 249 (262)
T 1k3x_A 234 GEPCERCGSI--IEKTTL 249 (262)
T ss_dssp TSBCTTTCCB--CEEEEE
T ss_pred cCCCCCCCCE--eEEEEE
Confidence 3569999997 888776
No 140
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=29.93 E-value=25 Score=26.04 Aligned_cols=28 Identities=7% Similarity=-0.170 Sum_probs=21.2
Q ss_pred EEEEccCccccccccCccccCCCCCCCceeE
Q 032998 69 WILKCHACYTITAEIGRIFCPKCGNGGTLRK 99 (129)
Q Consensus 69 W~~rC~~C~k~~~~~~~~fCp~CG~~~tL~r 99 (129)
-+..|+.|+++|... ..||.||.+ ..+|
T Consensus 123 ~R~~~~~~g~~y~~~--~~pp~~g~~-l~~r 150 (206)
T 3sr0_A 123 GRRINPETGEVYHVK--YNPPPPGVK-VIQR 150 (206)
T ss_dssp TEEECTTTCCEEETT--TBCCCTTCC-CBCC
T ss_pred CCccccCCCceeeee--ccCCCCCce-eccc
Confidence 346799999999763 569999998 4443
No 141
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=29.91 E-value=23 Score=27.84 Aligned_cols=16 Identities=31% Similarity=0.796 Sum_probs=13.1
Q ss_pred ccccCCCCCCCceeEEEE
Q 032998 85 RIFCPKCGNGGTLRKVAV 102 (129)
Q Consensus 85 ~~fCp~CG~~~tL~rv~v 102 (129)
.+-||.||.+ ++|+.+
T Consensus 242 G~pC~~CG~~--I~~~~~ 257 (271)
T 2xzf_A 242 GEKCSRCGAE--IQKIKV 257 (271)
T ss_dssp TSBCTTTCCB--CEEEEE
T ss_pred CCCCCCCCCE--eeEEEE
Confidence 3679999997 888776
No 142
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=29.88 E-value=23 Score=27.83 Aligned_cols=16 Identities=19% Similarity=0.343 Sum_probs=13.1
Q ss_pred ccccCCCCCCCceeEEEE
Q 032998 85 RIFCPKCGNGGTLRKVAV 102 (129)
Q Consensus 85 ~~fCp~CG~~~tL~rv~v 102 (129)
.+-||.||.+ ++++.+
T Consensus 240 g~pC~~CG~~--I~~~~~ 255 (268)
T 1k82_A 240 GEPCRVCGTP--IVATKH 255 (268)
T ss_dssp TSBCTTTCCB--CEEEEE
T ss_pred CCCCCCCCCE--eeEEEE
Confidence 3679999997 888776
No 143
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=29.71 E-value=23 Score=27.93 Aligned_cols=16 Identities=31% Similarity=0.686 Sum_probs=13.2
Q ss_pred ccccCCCCCCCceeEEEE
Q 032998 85 RIFCPKCGNGGTLRKVAV 102 (129)
Q Consensus 85 ~~fCp~CG~~~tL~rv~v 102 (129)
.+-||.||.+ ++|+.+
T Consensus 245 g~pC~~CG~~--I~~~~~ 260 (273)
T 3u6p_A 245 GNPCKRCGTP--IEKTVV 260 (273)
T ss_dssp TSBCTTTCCB--CEEEEE
T ss_pred cCCCCCCCCe--EEEEEE
Confidence 4679999997 888776
No 144
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=29.38 E-value=25 Score=22.24 Aligned_cols=22 Identities=23% Similarity=0.689 Sum_probs=11.4
Q ss_pred EccCccccccccC-ccccCCCCC
Q 032998 72 KCHACYTITAEIG-RIFCPKCGN 93 (129)
Q Consensus 72 rC~~C~k~~~~~~-~~fCp~CG~ 93 (129)
.|..|++.|.-.. +--|..||.
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~ 35 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGG 35 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCC
T ss_pred cccCCCCccCCccccccCCCCCE
Confidence 4667766554322 344555554
No 145
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=29.13 E-value=4.9 Score=29.41 Aligned_cols=23 Identities=26% Similarity=0.745 Sum_probs=11.6
Q ss_pred EccCcccccccc------CccccCCCCCC
Q 032998 72 KCHACYTITAEI------GRIFCPKCGNG 94 (129)
Q Consensus 72 rC~~C~k~~~~~------~~~fCp~CG~~ 94 (129)
.|+.|+..-... ...-|..||+.
T Consensus 105 lC~~C~sPdT~l~k~~r~~~l~C~ACGa~ 133 (139)
T 3cw2_K 105 ECSTCKSLDTILKKEKKSWYIVCLACGAQ 133 (139)
T ss_dssp SCCSSSSSCCCSCSSCSTTTSSCCC----
T ss_pred ECCCCCCcCcEEEEeCCeEEEEecCCCCC
Confidence 599998643221 23468899986
No 146
>3h7h_A Transcription elongation factor SPT4; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=28.70 E-value=14 Score=26.49 Aligned_cols=25 Identities=16% Similarity=0.328 Sum_probs=17.3
Q ss_pred EEEEccCccccccccC--ccccCCCCC
Q 032998 69 WILKCHACYTITAEIG--RIFCPKCGN 93 (129)
Q Consensus 69 W~~rC~~C~k~~~~~~--~~fCp~CG~ 93 (129)
-...|..|..+..... ..-||.||+
T Consensus 15 ~lrAC~~C~~V~t~~qF~~~gCpnC~~ 41 (120)
T 3h7h_A 15 HLRACLLCSLVKTIDQFEYDGCDNCDA 41 (120)
T ss_dssp TEEEETTTCBEEEHHHHHHHCCTTTHH
T ss_pred cCeeeccCCceechhhccCCCCCCCcc
Confidence 4678999998864310 134999995
No 147
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=28.65 E-value=10 Score=30.08 Aligned_cols=29 Identities=24% Similarity=0.564 Sum_probs=22.4
Q ss_pred ceeeeeEEEEccCccccccccCccccCCCCCC
Q 032998 63 IRQLHRWILKCHACYTITAEIGRIFCPKCGNG 94 (129)
Q Consensus 63 I~~~k~W~~rC~~C~k~~~~~~~~fCp~CG~~ 94 (129)
+..++.-+..|.-|+.++.. +.|+.|.++
T Consensus 47 l~~~~~~i~~C~~C~nlte~---~~C~IC~d~ 75 (228)
T 1vdd_A 47 LLEAKRDLHVCPICFNITDA---EKCDVCADP 75 (228)
T ss_dssp HHHHHHHCEECSSSCCEESS---SSCHHHHCS
T ss_pred HHHHHhcCeEcCCCCCCcCC---CcCCCCCCC
Confidence 34455667889999998753 779999987
No 148
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=28.64 E-value=16 Score=25.24 Aligned_cols=8 Identities=50% Similarity=1.294 Sum_probs=6.8
Q ss_pred ccCCCCCC
Q 032998 87 FCPKCGNG 94 (129)
Q Consensus 87 fCp~CG~~ 94 (129)
-||.||.+
T Consensus 10 ~~PlCG~~ 17 (95)
T 2k5c_A 10 KCPICGSP 17 (95)
T ss_dssp ECSSSCCE
T ss_pred cCCcCCCc
Confidence 49999986
No 149
>1g2r_A Hypothetical cytosolic protein; NUSA-INFB operon, structural genomics, PSI, protein structure initiative; 1.35A {Streptococcus pneumoniae} SCOP: d.192.1.1
Probab=28.42 E-value=56 Score=22.25 Aligned_cols=38 Identities=16% Similarity=0.210 Sum_probs=24.6
Q ss_pred EEccCccccccccCccccCCCCCCCceeEEEEEeCCCceEEeecCCccccCc
Q 032998 71 LKCHACYTITAEIGRIFCPKCGNGGTLRKVAVTVGENGIVLASRRPRITLRG 122 (129)
Q Consensus 71 ~rC~~C~k~~~~~~~~fCp~CG~~~tL~rv~v~v~~~G~~~~~~~~~~n~RG 122 (129)
-.|-+|.+..+.. .|.|+-. ..+|.+.+....+.+-||
T Consensus 12 R~CV~cr~~~pk~------------eLiR~V~--~~~g~v~~D~~~k~~GRG 49 (100)
T 1g2r_A 12 RKSVVSNEVIDKR------------DLLRIVK--NKEGQVFIDPTGKANGRG 49 (100)
T ss_dssp CBCTTTCCBCCGG------------GEEEEEE--CTTSCEEEETTSCCCSEE
T ss_pred eeCCcCCCCCChH------------HCEEEEE--cCCCcEEECCCCCCCCCE
Confidence 4588898876542 4666654 578888877554445555
No 150
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=28.40 E-value=21 Score=24.23 Aligned_cols=27 Identities=26% Similarity=0.572 Sum_probs=17.9
Q ss_pred eeEEEEccCccccccccCccccCCCCCC
Q 032998 67 HRWILKCHACYTITAEIGRIFCPKCGNG 94 (129)
Q Consensus 67 k~W~~rC~~C~k~~~~~~~~fCp~CG~~ 94 (129)
+....||..|++...-+..-.|. ||+.
T Consensus 22 k~~~~rC~~C~kkvgl~~~f~Cr-Cg~~ 48 (85)
T 1wff_A 22 KKIMKHCFLCGKKTGLATSFECR-CGNN 48 (85)
T ss_dssp CCCCCBCSSSCCBCSSSSCEECT-TCCE
T ss_pred cccCccchhhCCeecccCCeEcC-CCCE
Confidence 45568999999865432245684 8863
No 151
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=28.19 E-value=9.2 Score=26.83 Aligned_cols=30 Identities=23% Similarity=0.456 Sum_probs=18.3
Q ss_pred EEccCccccccccCccccCCCCCCCceeEEEE
Q 032998 71 LKCHACYTITAEIGRIFCPKCGNGGTLRKVAV 102 (129)
Q Consensus 71 ~rC~~C~k~~~~~~~~fCp~CG~~~tL~rv~v 102 (129)
|-|..|-..--.. -++||.||.+ .=+|+.+
T Consensus 48 YLCl~CLtlmL~~-SdrCpIC~~p-LPtkl~~ 77 (99)
T 2ko5_A 48 YLCLNCLTLLLSV-SNRCPICKMP-LPTKLRP 77 (99)
T ss_dssp EEEHHHHHHTCSS-SSEETTTTEE-CCCCSCT
T ss_pred hhHHHHHHHHHhh-ccCCcccCCc-CCcceec
Confidence 5566666544332 4889999987 3355444
No 152
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=28.03 E-value=26 Score=24.59 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=15.3
Q ss_pred EEccCccccccccC-ccccCCCCC
Q 032998 71 LKCHACYTITAEIG-RIFCPKCGN 93 (129)
Q Consensus 71 ~rC~~C~k~~~~~~-~~fCp~CG~ 93 (129)
..|..|++.|.-.. +--|..||.
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~ 93 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGN 93 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCC
T ss_pred CCCcCcCCccccccccccCCCCCe
Confidence 47999998775432 456777764
No 153
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=27.74 E-value=27 Score=22.55 Aligned_cols=22 Identities=23% Similarity=0.655 Sum_probs=13.3
Q ss_pred EccCccccccccC-ccccCCCCC
Q 032998 72 KCHACYTITAEIG-RIFCPKCGN 93 (129)
Q Consensus 72 rC~~C~k~~~~~~-~~fCp~CG~ 93 (129)
.|..|++.|.-.. +--|..||.
T Consensus 21 ~C~~C~~~Fs~~~RrHHCR~CG~ 43 (82)
T 2yw8_A 21 HCRQCEKEFSISRRKHHCRNCGH 43 (82)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCC
T ss_pred cccCcCCcccCccccccCCCCCC
Confidence 5888887665332 455666664
No 154
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=27.71 E-value=50 Score=27.98 Aligned_cols=27 Identities=19% Similarity=0.050 Sum_probs=12.5
Q ss_pred eeeEEEEccCccccccccC-ccccCCCC
Q 032998 66 LHRWILKCHACYTITAEIG-RIFCPKCG 92 (129)
Q Consensus 66 ~k~W~~rC~~C~k~~~~~~-~~fCp~CG 92 (129)
...-++.|..|.+..++.. ...||.||
T Consensus 135 ~~~~~~~~~~~~~~l~~~~v~g~cp~c~ 162 (560)
T 3h99_A 135 RTISQLYDPEKGMFLPDRFVKGTCPKCK 162 (560)
T ss_dssp EEEEEEEETTTTEECCGGGEEEECTTTC
T ss_pred eeeeEeecCccCceecchhcCCCCCCCC
Confidence 3344556666665544322 23344444
No 155
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=27.51 E-value=16 Score=23.58 Aligned_cols=8 Identities=13% Similarity=0.264 Sum_probs=3.6
Q ss_pred cccCCCCC
Q 032998 86 IFCPKCGN 93 (129)
Q Consensus 86 ~fCp~CG~ 93 (129)
..|+.||.
T Consensus 27 LiC~~cg~ 34 (69)
T 2pk7_A 27 LISKGAGL 34 (69)
T ss_dssp EEETTTTE
T ss_pred EEcCCCCc
Confidence 34555543
No 156
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=27.27 E-value=36 Score=19.82 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=16.1
Q ss_pred EEEccCccccccc-------------cCccccCCCCCC
Q 032998 70 ILKCHACYTITAE-------------IGRIFCPKCGNG 94 (129)
Q Consensus 70 ~~rC~~C~k~~~~-------------~~~~fCp~CG~~ 94 (129)
.+.|.-|++.|.. .....|+.||..
T Consensus 14 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~ 51 (72)
T 1x6e_A 14 PYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKA 51 (72)
T ss_dssp CEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCE
T ss_pred CccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcc
Confidence 3778888877642 112458888864
No 157
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}
Probab=27.14 E-value=48 Score=24.01 Aligned_cols=40 Identities=13% Similarity=0.196 Sum_probs=15.3
Q ss_pred CccccCCCCCCCceeEEEEEeCCCceEEeecCCccccCceeecCC
Q 032998 84 GRIFCPKCGNGGTLRKVAVTVGENGIVLASRRPRITLRGTKVSIS 128 (129)
Q Consensus 84 ~~~fCp~CG~~~tL~rv~v~v~~~G~~~~~~~~~~n~RG~~ySlP 128 (129)
...||+.+|.++.-..|.+.+-.+|.+++.+++ +..+++|
T Consensus 57 ~~~~~~~~~y~~~~~~v~~vv~~~~~vLLvrr~-----~g~w~lP 96 (206)
T 3o8s_A 57 KDLFCNETGYQTPKLDTRAAIFQEDKILLVQEN-----DGLWSLP 96 (206)
T ss_dssp -----------CCEEEEEEEEEETTEEEEEECT-----TSCEECS
T ss_pred HHHhccccCCCCCCccEEEEEEECCEEEEEEec-----CCeEECC
Confidence 357888888872222343344456887766554 3356666
No 158
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=27.00 E-value=14 Score=28.67 Aligned_cols=29 Identities=17% Similarity=0.038 Sum_probs=16.1
Q ss_pred EEEEEeCCCceEEeecCCccccCceeecCC
Q 032998 99 KVAVTVGENGIVLASRRPRITLRGTKVSIS 128 (129)
Q Consensus 99 rv~v~v~~~G~~~~~~~~~~n~RG~~ySlP 128 (129)
.+.+.+-.+|.+++.+++.... +..|++|
T Consensus 210 ~v~~vv~~~~~vLL~~r~~~~~-~g~w~lP 238 (352)
T 2qjt_B 210 TVDALVIVNDHILMVQRKAHPG-KDLWALP 238 (352)
T ss_dssp EEEEEEEETTEEEEEEESSSSS-TTCEECS
T ss_pred EEEEEEEECCEEEEEEEcCCCC-CCeEECC
Confidence 3445555778877665543222 2457776
No 159
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=26.93 E-value=37 Score=18.17 Aligned_cols=12 Identities=25% Similarity=0.539 Sum_probs=8.9
Q ss_pred EEEccCcccccc
Q 032998 70 ILKCHACYTITA 81 (129)
Q Consensus 70 ~~rC~~C~k~~~ 81 (129)
.+.|.-|++.|.
T Consensus 12 ~~~C~~C~k~f~ 23 (48)
T 2epr_A 12 QVACEICGKIFR 23 (48)
T ss_dssp SEEETTTTEEES
T ss_pred CeeCCCCCcccC
Confidence 367888888764
No 160
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=26.88 E-value=12 Score=26.20 Aligned_cols=32 Identities=19% Similarity=0.638 Sum_probs=23.8
Q ss_pred EEccCccccccccCccccCCCCCCCceeEEEEEe
Q 032998 71 LKCHACYTITAEIGRIFCPKCGNGGTLRKVAVTV 104 (129)
Q Consensus 71 ~rC~~C~k~~~~~~~~fCp~CG~~~tL~rv~v~v 104 (129)
--|..|...........||.|-.+ +.||....
T Consensus 23 vFCydCa~~~~~~~~k~Cp~C~~~--V~rVe~~~ 54 (101)
T 3vk6_A 23 VFCYDCAILHEKKGDKMCPGCSDP--VQRIEQCT 54 (101)
T ss_dssp EEEHHHHHHHHHTTCCBCTTTCCB--CSEEEEEE
T ss_pred cHHHHHHHHHHhccCCCCcCcCCe--eeeeEEec
Confidence 468888866543344789999998 88898853
No 161
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=26.85 E-value=27 Score=26.27 Aligned_cols=23 Identities=26% Similarity=0.651 Sum_probs=14.8
Q ss_pred EEccCccccccccC-ccccCCCCC
Q 032998 71 LKCHACYTITAEIG-RIFCPKCGN 93 (129)
Q Consensus 71 ~rC~~C~k~~~~~~-~~fCp~CG~ 93 (129)
..|..|.+.|.-.. +--|..||.
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~ 185 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQ 185 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCC
T ss_pred CccCCCCCccCCcccccccCCcCC
Confidence 57888887765332 455666664
No 162
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=26.60 E-value=29 Score=22.86 Aligned_cols=22 Identities=27% Similarity=0.647 Sum_probs=12.3
Q ss_pred EccCccccccccC-ccccCCCCC
Q 032998 72 KCHACYTITAEIG-RIFCPKCGN 93 (129)
Q Consensus 72 rC~~C~k~~~~~~-~~fCp~CG~ 93 (129)
.|..|++.+.-.. +.-|..||.
T Consensus 22 ~C~~C~~~F~~~~RrhhCr~CG~ 44 (90)
T 3t7l_A 22 NCMNCQVKFTFTKRRHHCRACGK 44 (90)
T ss_dssp BCTTTCCBCCSSSCCEECTTTCC
T ss_pred cCcCCCCcccchhhCccccCCCC
Confidence 5777776554322 345555554
No 163
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=26.51 E-value=34 Score=22.25 Aligned_cols=10 Identities=20% Similarity=0.687 Sum_probs=5.5
Q ss_pred EEccCccccc
Q 032998 71 LKCHACYTIT 80 (129)
Q Consensus 71 ~rC~~C~k~~ 80 (129)
..|+.|++.+
T Consensus 10 ~~CP~Cgkp~ 19 (68)
T 1lv3_A 10 VNCPTCGKTV 19 (68)
T ss_dssp EECTTTCCEE
T ss_pred CcCCCCCCcc
Confidence 3566666554
No 164
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=26.24 E-value=34 Score=21.41 Aligned_cols=22 Identities=18% Similarity=0.679 Sum_probs=16.2
Q ss_pred EEccCccccccccCccccCCCCC
Q 032998 71 LKCHACYTITAEIGRIFCPKCGN 93 (129)
Q Consensus 71 ~rC~~C~k~~~~~~~~fCp~CG~ 93 (129)
.+|+-|.+....+ ..+|..|=.
T Consensus 12 WkC~~C~k~N~Pl-~ryC~rCwa 33 (53)
T 2cr8_A 12 WQCTECKKFNSPS-KRYCFRCWA 33 (53)
T ss_dssp EECSSSCCEECSS-CCBCTTTCC
T ss_pred eecccccccCCCc-cchhHHHHH
Confidence 3699999766544 578999954
No 165
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=25.97 E-value=32 Score=20.90 Aligned_cols=21 Identities=24% Similarity=0.774 Sum_probs=15.7
Q ss_pred EccCccccccccCccccCCCCC
Q 032998 72 KCHACYTITAEIGRIFCPKCGN 93 (129)
Q Consensus 72 rC~~C~k~~~~~~~~fCp~CG~ 93 (129)
+|+.|.+..+.+ ..+|..|=.
T Consensus 15 kC~~C~~~N~Pl-~r~C~rCw~ 35 (46)
T 2c6a_A 15 KCTSCNEMNPPL-PSHCNRCWA 35 (46)
T ss_dssp ECTTTCCEECSS-CSSCTTTCC
T ss_pred ecccccccCCCc-cchhhHHHh
Confidence 699999766543 578999843
No 166
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=25.96 E-value=40 Score=19.42 Aligned_cols=11 Identities=27% Similarity=0.552 Sum_probs=7.9
Q ss_pred EEccCcccccc
Q 032998 71 LKCHACYTITA 81 (129)
Q Consensus 71 ~rC~~C~k~~~ 81 (129)
+.|.-|++.|.
T Consensus 10 ~~C~~C~k~f~ 20 (70)
T 1x5w_A 10 EKCSECSYSCS 20 (70)
T ss_dssp EECSSSSCEES
T ss_pred eECCCCCcccC
Confidence 67888877664
No 167
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=25.33 E-value=23 Score=28.58 Aligned_cols=24 Identities=29% Similarity=0.722 Sum_probs=16.8
Q ss_pred EEccCccccc----cc--cCccccCCCCCC
Q 032998 71 LKCHACYTIT----AE--IGRIFCPKCGNG 94 (129)
Q Consensus 71 ~rC~~C~k~~----~~--~~~~fCp~CG~~ 94 (129)
.+|+.|+... .+ .....|..||--
T Consensus 22 ~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~V 51 (345)
T 3k7a_M 22 LTCPECKVYPPKIVERFSEGDVVCALCGLV 51 (345)
T ss_dssp CCCSTTCCSCCCCCCCSSSCSCCCSSSCCC
T ss_pred CcCcCCCCCCCceEEECCCCCEecCCCCeE
Confidence 4699998742 22 235789999985
No 168
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=25.28 E-value=29 Score=26.43 Aligned_cols=51 Identities=16% Similarity=0.400 Sum_probs=25.6
Q ss_pred HHHHHHHHhCceeecCCC--Ccc--eeeeeEE--EEccCccccccccC-ccccCCCCC
Q 032998 43 AMQNVILQMGLRLLAPGG--MQI--RQLHRWI--LKCHACYTITAEIG-RIFCPKCGN 93 (129)
Q Consensus 43 amQNVl~~lGL~~~s~~g--~~I--~~~k~W~--~rC~~C~k~~~~~~-~~fCp~CG~ 93 (129)
.+-+-|+.-|+.|=+++- ..+ ...-.|+ -.|..|.+.|.-.. +.-|..||.
T Consensus 131 ~~Y~~Lk~~G~~FP~~~~~damf~~~~~p~W~~~~~C~~C~~~F~~~~RrhHCR~CG~ 188 (226)
T 3zyq_A 131 DTYQIMKVEGHVFPEFKESDAMFAAERAPDWVDAEECHRCRVQFGVMTRKHHCRACGQ 188 (226)
T ss_dssp HHHHHHHHHTCCCCCCCGGGGCCCCCCCCCCCCCSBCTTTCCBCBTTBCCEECTTTCC
T ss_pred HHHHHHHhcCCCcccchhHHHhhhcccccccccCCCCcCcCCCCCccccccccCCCcC
Confidence 344556677777732210 000 0111243 47888887665332 455666664
No 169
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=25.27 E-value=18 Score=28.12 Aligned_cols=25 Identities=32% Similarity=0.793 Sum_probs=15.6
Q ss_pred EEEccCccc----ccc--ccCccccCCCCCC
Q 032998 70 ILKCHACYT----ITA--EIGRIFCPKCGNG 94 (129)
Q Consensus 70 ~~rC~~C~k----~~~--~~~~~fCp~CG~~ 94 (129)
..+|+.|+. +.. .....+|..||--
T Consensus 21 ~~~CPECGs~~t~IV~D~erGE~VCsdCGLV 51 (197)
T 3k1f_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLV 51 (197)
T ss_dssp CCCCTTTCCSSCCEEEEGGGTEEEETTTCBB
T ss_pred CeECcCCCCcCCeEEEeCCCCEEEEcCCCCC
Confidence 346888886 222 2335788888874
No 170
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=24.99 E-value=22 Score=28.60 Aligned_cols=26 Identities=31% Similarity=0.809 Sum_probs=18.9
Q ss_pred eEEEEccCcccccccc----CccccCCCCCC
Q 032998 68 RWILKCHACYTITAEI----GRIFCPKCGNG 94 (129)
Q Consensus 68 ~W~~rC~~C~k~~~~~----~~~fCp~CG~~ 94 (129)
-| .+|..|++..... ....||.||++
T Consensus 23 l~-~kc~~~~~~~~~~~l~~~~~v~~~~~~~ 52 (304)
T 2f9y_B 23 VW-TKCDSCGQVLYRAELERNLEVCPKCDHH 52 (304)
T ss_dssp CE-ECCTTTCCCEETTHHHHTTTBCTTTCCB
T ss_pred HH-HhhhhccchhhHHHHHHHhCCCCCCCCC
Confidence 45 4799999764332 35889999987
No 171
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=24.66 E-value=36 Score=28.07 Aligned_cols=43 Identities=16% Similarity=0.325 Sum_probs=25.8
Q ss_pred eEEEEccC--cccccccc--CccccCCCCCC--Cc--eeEEEEEeC-CCceE
Q 032998 68 RWILKCHA--CYTITAEI--GRIFCPKCGNG--GT--LRKVAVTVG-ENGIV 110 (129)
Q Consensus 68 ~W~~rC~~--C~k~~~~~--~~~fCp~CG~~--~t--L~rv~v~v~-~~G~~ 110 (129)
-|-..|+. |+|.-.+. ..-.|++||.. .. ..++++.+. ..|..
T Consensus 306 ~~Y~aC~~~~C~kkv~~~~~g~~~C~~C~~~~~~~~~ry~l~~~v~D~Tg~~ 357 (444)
T 4gop_C 306 LYYTACASEGCNKKVNLDHENNWRCEKCDRSYATPEYRYILSTNVADATGQM 357 (444)
T ss_dssp CEEEECCSTTCCCBEEECTTSCEEETTTTEEESSCEEEECEEEEEEETTEEE
T ss_pred eEEccCCcccCCCccccCCCccEECCCCCCcCccccEEEEEEEEEEeCCCCE
Confidence 46689998 99765332 24689999942 01 234444443 44655
No 172
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2 PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D* 2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D* 3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Probab=24.64 E-value=20 Score=35.39 Aligned_cols=29 Identities=24% Similarity=0.470 Sum_probs=17.5
Q ss_pred EEccCcccccccc-CccccCCCCCCCceeEE
Q 032998 71 LKCHACYTITAEI-GRIFCPKCGNGGTLRKV 100 (129)
Q Consensus 71 ~rC~~C~k~~~~~-~~~fCp~CG~~~tL~rv 100 (129)
+.|. |++.-... ...||+.||-.-|..||
T Consensus 56 ~~C~-Cgkyk~~~~~~~~C~~Cgve~t~s~V 85 (1524)
T 2a6h_D 56 YECA-CGKYKRQRFEGKVCERCGVEVTKSIV 85 (1524)
T ss_dssp SCCS-SCSSCSSTTTTCCCSSSCCCCSSTHH
T ss_pred ceEc-CccccccCcCCCCCCCCCCccccchH
Confidence 3576 88644222 24799999977344443
No 173
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=24.54 E-value=31 Score=22.34 Aligned_cols=6 Identities=33% Similarity=0.993 Sum_probs=3.1
Q ss_pred ccCccc
Q 032998 73 CHACYT 78 (129)
Q Consensus 73 C~~C~k 78 (129)
|+.|..
T Consensus 28 CP~C~~ 33 (86)
T 2ct7_A 28 CAQCSF 33 (86)
T ss_dssp CSSSCC
T ss_pred CcCCCc
Confidence 555554
No 174
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=24.29 E-value=34 Score=22.12 Aligned_cols=22 Identities=27% Similarity=0.711 Sum_probs=10.6
Q ss_pred EEccCccccccccC-ccccCCCC
Q 032998 71 LKCHACYTITAEIG-RIFCPKCG 92 (129)
Q Consensus 71 ~rC~~C~k~~~~~~-~~fCp~CG 92 (129)
..|..|.+.|.-.. +--|..||
T Consensus 22 ~~C~~C~~~Fs~~~RrHHCR~CG 44 (84)
T 1z2q_A 22 PACNGCGCVFTTTVRRHHCRNCG 44 (84)
T ss_dssp CBCTTTCCBCCTTSCCEECTTTC
T ss_pred CCCcCcCCccccchhcccccCCC
Confidence 35666666554322 33444444
No 175
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=24.17 E-value=41 Score=20.09 Aligned_cols=11 Identities=18% Similarity=0.413 Sum_probs=7.6
Q ss_pred EEccCcccccc
Q 032998 71 LKCHACYTITA 81 (129)
Q Consensus 71 ~rC~~C~k~~~ 81 (129)
|.|.-|++.|.
T Consensus 5 y~C~~C~k~F~ 15 (60)
T 4gzn_C 5 FFCNFCGKTYR 15 (60)
T ss_dssp EECTTTCCEES
T ss_pred ccCCCCCCEeC
Confidence 56777777664
No 176
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=24.15 E-value=25 Score=27.69 Aligned_cols=16 Identities=31% Similarity=0.831 Sum_probs=12.8
Q ss_pred ccccCCCCCCCceeEEEE
Q 032998 85 RIFCPKCGNGGTLRKVAV 102 (129)
Q Consensus 85 ~~fCp~CG~~~tL~rv~v 102 (129)
.+-||.||.+ ++++.+
T Consensus 235 g~pC~~CG~~--I~~~~~ 250 (266)
T 1ee8_A 235 GLPCPACGRP--VERRVV 250 (266)
T ss_dssp TSBCTTTCCB--CEEEES
T ss_pred CCCCCCCCCE--eeEEEE
Confidence 4679999997 887665
No 177
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=23.80 E-value=32 Score=15.70 Aligned_cols=11 Identities=18% Similarity=0.461 Sum_probs=6.8
Q ss_pred EEccCcccccc
Q 032998 71 LKCHACYTITA 81 (129)
Q Consensus 71 ~rC~~C~k~~~ 81 (129)
+.|.-|++.+.
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 1rik_A 3 FACPECPKRFM 13 (29)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCCCchhC
Confidence 46677766554
No 178
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=23.70 E-value=30 Score=23.20 Aligned_cols=20 Identities=20% Similarity=0.604 Sum_probs=14.0
Q ss_pred ccccCCCCCCCceeEEEEEeCCC
Q 032998 85 RIFCPKCGNGGTLRKVAVTVGEN 107 (129)
Q Consensus 85 ~~fCp~CG~~~tL~rv~v~v~~~ 107 (129)
.-.||.||+. .-|.|.++..
T Consensus 23 ~F~CPfCnh~---~sV~vkidk~ 42 (85)
T 1wii_A 23 QFTCPFCNHE---KSCDVKMDRA 42 (85)
T ss_dssp CCCCTTTCCS---SCEEEEEETT
T ss_pred eEcCCCCCCC---CeEEEEEEcc
Confidence 4569999998 3467777643
No 179
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=23.68 E-value=27 Score=22.18 Aligned_cols=23 Identities=26% Similarity=0.651 Sum_probs=13.5
Q ss_pred EccCccccccccCccccCCCCCC
Q 032998 72 KCHACYTITAEIGRIFCPKCGNG 94 (129)
Q Consensus 72 rC~~C~k~~~~~~~~fCp~CG~~ 94 (129)
.|.-|........+.-||.||-+
T Consensus 13 ~C~vC~~~~~~~akY~CPrC~~r 35 (59)
T 1x4s_A 13 PCGFCPAGEVQPARYTCPRCNAP 35 (59)
T ss_dssp EECSSCTTCCEEECEECTTTCCE
T ss_pred cCcCCCCCcCCCccccCcCCCCC
Confidence 67778742112235668888764
No 180
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=23.50 E-value=32 Score=15.66 Aligned_cols=12 Identities=17% Similarity=0.509 Sum_probs=7.9
Q ss_pred EEccCccccccc
Q 032998 71 LKCHACYTITAE 82 (129)
Q Consensus 71 ~rC~~C~k~~~~ 82 (129)
+.|.-|++.+..
T Consensus 4 ~~C~~C~~~f~~ 15 (30)
T 2m0d_A 4 YQCDYCGRSFSD 15 (30)
T ss_dssp EECTTTCCEESC
T ss_pred ccCCCCCcccCC
Confidence 567777776643
No 181
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=23.50 E-value=64 Score=17.01 Aligned_cols=23 Identities=22% Similarity=0.538 Sum_probs=17.4
Q ss_pred EEccCccccccccCccccCCCCCC
Q 032998 71 LKCHACYTITAEIGRIFCPKCGNG 94 (129)
Q Consensus 71 ~rC~~C~k~~~~~~~~fCp~CG~~ 94 (129)
..|..|-..-. .....|..||.+
T Consensus 7 W~C~~CTf~N~-~~~~~Ce~C~~~ 29 (31)
T 1nj3_A 7 WACQHCTFMNQ-PGTGHCEMCSLP 29 (31)
T ss_dssp EECSSSCCEEC-SSCSSCSSSCCC
T ss_pred ccCCcccccCC-CCCCccCCcCCC
Confidence 37999986543 456889999986
No 182
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=23.19 E-value=68 Score=22.42 Aligned_cols=27 Identities=33% Similarity=0.570 Sum_probs=20.7
Q ss_pred ccccCCCCCCCceeEEEEEeCCCceE-Eeec
Q 032998 85 RIFCPKCGNGGTLRKVAVTVGENGIV-LASR 114 (129)
Q Consensus 85 ~~fCp~CG~~~tL~rv~v~v~~~G~~-~~~~ 114 (129)
..+||.||.+ .||.+.+.+||+. .+.+
T Consensus 73 ~lv~p~~~k~---tRvg~~~~edG~kvRv~k 100 (110)
T 3v2d_Y 73 RPICPACGKP---TRVRKKFLENGKKIRVCA 100 (110)
T ss_dssp EEBCTTTCSB---CCEEEEECSSCCEEEEES
T ss_pred EEEcCcCCCc---cEEEEEECCCCcEEEEEe
Confidence 4789999998 5788888899964 3443
No 183
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=23.05 E-value=33 Score=24.24 Aligned_cols=23 Identities=22% Similarity=0.543 Sum_probs=12.8
Q ss_pred EEccCccccccccC-ccccCCCCC
Q 032998 71 LKCHACYTITAEIG-RIFCPKCGN 93 (129)
Q Consensus 71 ~rC~~C~k~~~~~~-~~fCp~CG~ 93 (129)
..|.+|+..|.-.. +--|..||.
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ 43 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKK 43 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCC
T ss_pred CcccCcCCccccccccccCCCCCC
Confidence 56777776554322 344555554
No 184
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=23.03 E-value=44 Score=29.50 Aligned_cols=46 Identities=28% Similarity=0.466 Sum_probs=25.3
Q ss_pred HHHhCcee-----ecCCCCcceeeeeEEEEccCccccccccCccccCCCCCC
Q 032998 48 ILQMGLRL-----LAPGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNG 94 (129)
Q Consensus 48 l~~lGL~~-----~s~~g~~I~~~k~W~~rC~~C~k~~~~~~~~fCp~CG~~ 94 (129)
..++||.+ +.-.|+.|-++-.-+..=..=......+ -..||.||++
T Consensus 364 I~~~di~iGD~V~V~rAGdVIP~I~~Vv~~~r~~~~~~~~~-P~~CP~Cgs~ 414 (586)
T 4glx_A 364 IERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVF-PTHCPVCGSD 414 (586)
T ss_dssp HHHHTCEETCEEEEEEETTTEEEEEEECGGGCCSSCEECCC-CSBCTTTCCB
T ss_pred HHhcCCCcCCEEEEEECCCcCccceeeecccCCccCCCCcC-CCcCCCCCCc
Confidence 45677765 3344788888766553211111111112 2679999998
No 185
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=22.37 E-value=15 Score=28.84 Aligned_cols=29 Identities=24% Similarity=0.613 Sum_probs=22.6
Q ss_pred ceeeeeEEEEccCccccccccCccccCCCCCC
Q 032998 63 IRQLHRWILKCHACYTITAEIGRIFCPKCGNG 94 (129)
Q Consensus 63 I~~~k~W~~rC~~C~k~~~~~~~~fCp~CG~~ 94 (129)
+.+++.-+..|.-|+.++.. +.|+.|-++
T Consensus 61 l~~~~~~i~~C~~C~nlte~---~~C~IC~d~ 89 (212)
T 3vdp_A 61 IIEAKEKLRYCKICFNITDK---EVCDICSDE 89 (212)
T ss_dssp HHHHHHHCEECTTTCCEESS---SSCHHHHCT
T ss_pred HHHHHHhCCcCCCCCCCCCC---CcCCCCCCC
Confidence 34455567789999998765 679999987
No 186
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.21 E-value=42 Score=21.65 Aligned_cols=10 Identities=20% Similarity=0.700 Sum_probs=5.4
Q ss_pred EccCcccccc
Q 032998 72 KCHACYTITA 81 (129)
Q Consensus 72 rC~~C~k~~~ 81 (129)
.|..|.+.|.
T Consensus 16 ~C~~C~~~F~ 25 (84)
T 1x4u_A 16 NCTGCSATFS 25 (84)
T ss_dssp SCSSSCCCCC
T ss_pred cCcCcCCccc
Confidence 4666665543
No 187
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=21.73 E-value=30 Score=20.06 Aligned_cols=10 Identities=40% Similarity=0.986 Sum_probs=6.3
Q ss_pred ccccCCCCCC
Q 032998 85 RIFCPKCGNG 94 (129)
Q Consensus 85 ~~fCp~CG~~ 94 (129)
...||.||..
T Consensus 9 ~~~C~~C~~~ 18 (39)
T 2i5o_A 9 QVPCEKCGSL 18 (39)
T ss_dssp EEECTTTCCE
T ss_pred CcccccccCc
Confidence 3557777764
No 188
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=21.68 E-value=39 Score=27.83 Aligned_cols=24 Identities=13% Similarity=-0.020 Sum_probs=16.0
Q ss_pred EEccCccccccccC-ccccCCCCCC
Q 032998 71 LKCHACYTITAEIG-RIFCPKCGNG 94 (129)
Q Consensus 71 ~rC~~C~k~~~~~~-~~fCp~CG~~ 94 (129)
-+|+-|+..|.... ...|++||--
T Consensus 279 v~Cp~cgA~y~~~~kG~lC~vC~l~ 303 (320)
T 3mkr_B 279 EKCPLSGACYSPEFKGQICKVTTVT 303 (320)
T ss_dssp EECTTTCCEECGGGTTSBCTTTSSB
T ss_pred ccCCCCCCeechhhCCCCCCCCcCc
Confidence 46888886665432 5778888753
No 189
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.47 E-value=38 Score=15.38 Aligned_cols=11 Identities=18% Similarity=0.579 Sum_probs=7.2
Q ss_pred EEccCcccccc
Q 032998 71 LKCHACYTITA 81 (129)
Q Consensus 71 ~rC~~C~k~~~ 81 (129)
+.|.-|++.+.
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvh_A 4 FSCSLCPQRSR 14 (27)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCcChhhC
Confidence 56777776654
No 190
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.36 E-value=33 Score=15.47 Aligned_cols=8 Identities=38% Similarity=1.153 Sum_probs=6.1
Q ss_pred ccCCCCCC
Q 032998 87 FCPKCGNG 94 (129)
Q Consensus 87 fCp~CG~~ 94 (129)
.|+.||..
T Consensus 4 ~C~~C~~~ 11 (29)
T 2m0e_A 4 KCPHCDKK 11 (29)
T ss_dssp CCSSCCCC
T ss_pred cCCCCCcc
Confidence 48889874
No 191
>3r8s_0 50S ribosomal protein L32; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ...
Probab=21.33 E-value=26 Score=21.63 Aligned_cols=14 Identities=21% Similarity=0.185 Sum_probs=9.3
Q ss_pred CccccCCCCCCCcee
Q 032998 84 GRIFCPKCGNGGTLR 98 (129)
Q Consensus 84 ~~~fCp~CG~~~tL~ 98 (129)
....||.||.. .|.
T Consensus 26 ~l~~c~~cGe~-~l~ 39 (56)
T 3r8s_0 26 SLSVDKTSGEK-HLR 39 (56)
T ss_dssp CEEECTTTCCE-EET
T ss_pred ceeECCCCCCe-ecc
Confidence 45778888876 444
No 192
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*
Probab=21.25 E-value=57 Score=20.87 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=17.7
Q ss_pred EccCccccccccCccccCCCCCC
Q 032998 72 KCHACYTITAEIGRIFCPKCGNG 94 (129)
Q Consensus 72 rC~~C~k~~~~~~~~fCp~CG~~ 94 (129)
.|.+|-.+.. .....|..||.+
T Consensus 10 ~CP~CTf~N~-p~~p~CEmC~~p 31 (64)
T 3b08_B 10 QCPGCTFINK-PTRPGCEMCCRA 31 (64)
T ss_dssp ECTTTCCEEC-TTCSBCTTTCCB
T ss_pred cCCCccccCC-CCCCccCcCCCC
Confidence 7999986554 457899999987
No 193
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=21.25 E-value=84 Score=21.34 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=18.5
Q ss_pred ccccCCCCCCCceeEEEEEeCCCceE
Q 032998 85 RIFCPKCGNGGTLRKVAVTVGENGIV 110 (129)
Q Consensus 85 ~~fCp~CG~~~tL~rv~v~v~~~G~~ 110 (129)
..+||.||.+ .||.+.+.+||+.
T Consensus 63 ~lv~p~~~k~---tRvg~~~~~dg~k 85 (96)
T 2ftc_N 63 KLVDPMDRKP---TEIEWRFTEAGER 85 (96)
T ss_pred EEEeCcCCCc---eEEEEEEccCCcE
Confidence 3789999998 6788888788864
No 194
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.93 E-value=52 Score=19.81 Aligned_cols=22 Identities=23% Similarity=0.622 Sum_probs=16.4
Q ss_pred EccCccccccccCccccCCCCCC
Q 032998 72 KCHACYTITAEIGRIFCPKCGNG 94 (129)
Q Consensus 72 rC~~C~k~~~~~~~~fCp~CG~~ 94 (129)
-|.+|.- .+..+...|..|+.+
T Consensus 13 ~C~~C~v-~N~a~~~kC~aCetp 34 (47)
T 2ebq_A 13 DCDTCLV-QNKPEAIKCVACETP 34 (47)
T ss_dssp ECSSSCC-EECSSCSBCSSSCCB
T ss_pred ECCeeec-cCccCCceecCcCCC
Confidence 6999984 334456789999976
No 195
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=20.77 E-value=22 Score=26.46 Aligned_cols=9 Identities=22% Similarity=0.250 Sum_probs=7.1
Q ss_pred cccCCCCCC
Q 032998 86 IFCPKCGNG 94 (129)
Q Consensus 86 ~fCp~CG~~ 94 (129)
.+||.|+.+
T Consensus 244 ~~cP~~~~~ 252 (281)
T 2c2l_A 244 HFNPVTRSP 252 (281)
T ss_dssp SSCTTTCCC
T ss_pred CCCcCCCCC
Confidence 359999987
No 196
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=20.74 E-value=41 Score=24.68 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=25.4
Q ss_pred eEEEEccC--cccccccc--CccccCCCCCC--Ccee--EEEEEe-CCCceE
Q 032998 68 RWILKCHA--CYTITAEI--GRIFCPKCGNG--GTLR--KVAVTV-GENGIV 110 (129)
Q Consensus 68 ~W~~rC~~--C~k~~~~~--~~~fCp~CG~~--~tL~--rv~v~v-~~~G~~ 110 (129)
-|-..|+. |.|.-.+. ..-.|++|+.. +... .+++.+ |..|.+
T Consensus 41 ~~Y~aC~~~~CnKKv~~~~~g~~~CekC~~~~~~~~~ry~l~~~i~D~Tg~~ 92 (181)
T 1l1o_C 41 CMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQENQ 92 (181)
T ss_dssp TEEEBCCSTTCCCBCEEETTTEEEETTTTEEESSCCEEEEEEEEEECSSCEE
T ss_pred EEECCCCchhcCCccccCCCCeEECCCCCCcCCCceEEEEEEEEEEeCCCCE
Confidence 56678999 99754332 24579999862 1122 344444 455765
No 197
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=20.42 E-value=26 Score=25.34 Aligned_cols=13 Identities=15% Similarity=0.312 Sum_probs=8.6
Q ss_pred HHHHHHHhCceee
Q 032998 44 MQNVILQMGLRLL 56 (129)
Q Consensus 44 mQNVl~~lGL~~~ 56 (129)
++|.+.++|.+++
T Consensus 18 i~~al~~~G~~~~ 30 (211)
T 4gud_A 18 VKFAIERLGYAVT 30 (211)
T ss_dssp HHHHHHHTTCCEE
T ss_pred HHHHHHHCCCEEE
Confidence 4455778887764
No 198
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=20.41 E-value=45 Score=21.98 Aligned_cols=8 Identities=38% Similarity=0.986 Sum_probs=4.0
Q ss_pred cccCCCCC
Q 032998 86 IFCPKCGN 93 (129)
Q Consensus 86 ~fCp~CG~ 93 (129)
.||..|-.
T Consensus 34 vfC~~Cs~ 41 (88)
T 1wfk_A 34 AFCNGCLS 41 (88)
T ss_dssp EEETTTSC
T ss_pred EEChhHcC
Confidence 44555544
No 199
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=20.18 E-value=43 Score=27.66 Aligned_cols=23 Identities=0% Similarity=-0.406 Sum_probs=12.7
Q ss_pred EEccCcccccccc-CccccCCCCC
Q 032998 71 LKCHACYTITAEI-GRIFCPKCGN 93 (129)
Q Consensus 71 ~rC~~C~k~~~~~-~~~fCp~CG~ 93 (129)
-.|+-|+..|... ....|++|+-
T Consensus 288 v~Cp~cgA~y~~~~kG~lC~vC~l 311 (325)
T 3mv2_A 288 VSDPLTGSKYVITEKDKIDRIAMI 311 (325)
T ss_dssp EECTTTCCEEEGGGTTSBCSSSSC
T ss_pred ccCCCCCCeechhhCCCCCCCCcC
Confidence 4566666555432 2456666664
No 200
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=20.08 E-value=20 Score=23.09 Aligned_cols=10 Identities=40% Similarity=1.222 Sum_probs=8.4
Q ss_pred ccccCCCCCC
Q 032998 85 RIFCPKCGNG 94 (129)
Q Consensus 85 ~~fCp~CG~~ 94 (129)
..||..||..
T Consensus 33 ~r~CaRCGg~ 42 (62)
T 2a20_A 33 TKFCARCGGR 42 (62)
T ss_dssp CEECTTSEEE
T ss_pred CeeecccCCE
Confidence 4789999987
No 201
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.04 E-value=41 Score=15.14 Aligned_cols=11 Identities=36% Similarity=0.709 Sum_probs=6.6
Q ss_pred EEccCcccccc
Q 032998 71 LKCHACYTITA 81 (129)
Q Consensus 71 ~rC~~C~k~~~ 81 (129)
+.|.-|++.+.
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 2m0f_A 3 LKCRECGKQFT 13 (29)
T ss_dssp EECTTTSCEES
T ss_pred ccCCCCCCccC
Confidence 45666666554
Done!