Query 033000
Match_columns 129
No_of_seqs 150 out of 780
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 13:53:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033000.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033000hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gj8_B Nuclear pore complex pr 99.8 1.6E-19 5.4E-24 119.4 2.7 75 3-79 4-91 (92)
2 3gj8_B Nuclear pore complex pr 99.7 6.9E-18 2.4E-22 111.5 2.7 79 47-129 4-90 (92)
3 3gj7_B Nuclear pore complex pr 99.4 1E-13 3.4E-18 92.4 2.7 76 2-79 4-98 (98)
4 2lk0_A RNA-binding protein 5; 99.3 1.1E-12 3.6E-17 70.6 2.4 30 4-33 2-31 (32)
5 2k1p_A Zinc finger RAN-binding 99.3 1.4E-12 4.8E-17 70.5 2.6 31 3-33 2-32 (33)
6 1n0z_A ZNF265; zinc finger, RN 99.2 4.1E-12 1.4E-16 73.3 3.3 34 2-35 9-44 (45)
7 3gj7_B Nuclear pore complex pr 99.2 5.2E-12 1.8E-16 84.1 2.6 73 49-129 7-97 (98)
8 2k1p_A Zinc finger RAN-binding 99.2 1.3E-11 4.4E-16 66.7 3.3 31 47-79 2-32 (33)
9 2lk0_A RNA-binding protein 5; 99.2 1E-11 3.5E-16 66.7 2.5 30 48-79 2-31 (32)
10 1n0z_A ZNF265; zinc finger, RN 99.2 2.7E-11 9.1E-16 69.8 3.9 37 44-80 7-43 (45)
11 3gj3_B Nuclear pore complex pr 98.8 3.6E-09 1.2E-13 56.9 2.4 31 3-33 3-33 (33)
12 3gj5_B Nuclear pore complex pr 98.7 5.6E-09 1.9E-13 56.5 2.3 31 3-33 3-33 (34)
13 2ebq_A Nuclear pore complex pr 98.5 7.9E-08 2.7E-12 55.5 3.3 33 2-34 6-38 (47)
14 2ebr_A Nuclear pore complex pr 98.5 8.5E-08 2.9E-12 55.4 2.9 33 2-34 6-38 (47)
15 3gj3_B Nuclear pore complex pr 98.4 1.2E-07 4E-12 50.9 2.7 32 46-79 2-33 (33)
16 3gj5_B Nuclear pore complex pr 98.3 3.1E-07 1.1E-11 49.6 2.6 32 46-79 2-33 (34)
17 2ebr_A Nuclear pore complex pr 98.3 7.3E-07 2.5E-11 51.5 4.3 36 44-81 4-39 (47)
18 2ebv_A Nuclear pore complex pr 98.2 6E-07 2E-11 53.8 2.8 32 2-33 26-57 (57)
19 2ebq_A Nuclear pore complex pr 98.2 1.3E-06 4.5E-11 50.3 3.8 31 97-129 6-36 (47)
20 2d9g_A YY1-associated factor 2 98.1 2E-06 6.7E-11 50.9 3.6 33 2-34 6-38 (53)
21 2d9g_A YY1-associated factor 2 98.0 9.1E-06 3.1E-10 48.0 4.1 30 98-129 7-36 (53)
22 2ebv_A Nuclear pore complex pr 97.8 3E-05 1E-09 46.3 5.0 35 43-79 23-57 (57)
23 3a9j_C Mitogen-activated prote 97.7 2.2E-05 7.7E-10 42.0 2.8 29 4-32 5-33 (34)
24 3a9j_C Mitogen-activated prote 97.6 4.1E-05 1.4E-09 40.9 2.8 28 100-129 6-33 (34)
25 1nj3_A NPL4; NZF domain, rubre 97.6 6.5E-05 2.2E-09 39.3 3.5 28 100-129 4-31 (31)
26 1nj3_A NPL4; NZF domain, rubre 97.4 0.00015 5.1E-09 37.9 2.9 26 50-77 5-30 (31)
27 2crc_A Ubiquitin conjugating e 97.0 0.0005 1.7E-08 40.2 2.9 30 5-34 8-37 (52)
28 2crc_A Ubiquitin conjugating e 96.9 0.00065 2.2E-08 39.8 2.5 28 100-129 8-35 (52)
29 3b08_B Ranbp-type and C3HC4-ty 96.7 0.0012 4.2E-08 40.1 3.0 30 5-34 6-35 (64)
30 3b08_B Ranbp-type and C3HC4-ty 96.6 0.0012 4E-08 40.3 2.5 27 101-129 7-33 (64)
31 2c6a_A Ubiquitin-protein ligas 95.8 0.0061 2.1E-07 34.5 2.5 28 6-33 12-39 (46)
32 2c6a_A Ubiquitin-protein ligas 94.7 0.024 8.2E-07 32.1 2.7 27 50-78 12-38 (46)
33 1w7p_D VPS36P, YLR417W; ESCRT- 94.6 0.0058 2E-07 51.3 0.0 76 49-128 115-204 (566)
34 1w7p_D VPS36P, YLR417W; ESCRT- 94.3 0.0076 2.6E-07 50.7 0.0 72 6-79 116-206 (566)
35 2cr8_A MDM4 protein; ZF-ranbp 91.7 0.18 6E-06 29.1 3.1 30 4-33 8-37 (53)
36 1dx8_A Rubredoxin; electron tr 90.2 0.55 1.9E-05 28.7 4.6 48 1-61 1-48 (70)
37 2cr8_A MDM4 protein; ZF-ranbp 86.4 0.93 3.2E-05 26.1 3.5 30 48-79 8-37 (53)
38 2ayj_A 50S ribosomal protein L 82.2 0.7 2.4E-05 27.1 1.8 25 6-30 18-42 (56)
39 2kn9_A Rubredoxin; metalloprot 80.5 2 6.8E-05 27.0 3.6 43 6-61 26-68 (81)
40 1e8j_A Rubredoxin; iron-sulfur 80.2 3.8 0.00013 23.4 4.5 16 44-61 29-44 (52)
41 1yk4_A Rubredoxin, RD; electro 80.1 2.3 7.9E-05 24.3 3.6 16 44-61 28-43 (52)
42 2v3b_B Rubredoxin 2, rubredoxi 80.0 2.3 7.7E-05 24.6 3.5 16 44-61 29-44 (55)
43 3j21_g 50S ribosomal protein L 77.5 1.1 3.8E-05 25.7 1.6 24 7-30 14-37 (51)
44 1s24_A Rubredoxin 2; electron 76.5 3.1 0.00011 26.4 3.7 43 6-61 34-76 (87)
45 2j9u_B VPS36, vacuolar protein 74.2 1.6 5.3E-05 27.1 1.8 18 6-23 16-33 (76)
46 4b2u_A S67; toxin, ICK; NMR {S 72.4 0.95 3.2E-05 23.4 0.4 13 45-59 12-24 (36)
47 3v43_A Histone acetyltransfera 70.9 4.4 0.00015 26.4 3.5 19 4-30 52-70 (112)
48 2ysm_A Myeloid/lymphoid or mix 67.6 2.2 7.4E-05 27.7 1.4 21 4-32 45-65 (111)
49 2ayj_A 50S ribosomal protein L 66.1 3.4 0.00012 24.1 1.9 25 50-76 18-42 (56)
50 4rxn_A Rubredoxin; electron tr 65.2 6.4 0.00022 22.7 3.0 16 44-61 29-44 (54)
51 3pwf_A Rubrerythrin; non heme 63.2 3.8 0.00013 28.9 2.1 28 49-78 136-164 (170)
52 3shb_A E3 ubiquitin-protein li 63.0 4.5 0.00015 24.9 2.2 18 5-31 19-36 (77)
53 3asl_A E3 ubiquitin-protein li 62.6 9.2 0.00031 22.8 3.5 10 49-60 57-67 (70)
54 3j21_g 50S ribosomal protein L 61.8 5.7 0.0002 22.6 2.3 25 50-76 13-37 (51)
55 6rxn_A Rubredoxin; electron tr 58.5 5.7 0.00019 22.1 1.9 11 100-112 28-38 (46)
56 2e6s_A E3 ubiquitin-protein li 53.7 14 0.00047 22.5 3.3 11 48-60 64-75 (77)
57 1dl6_A Transcription factor II 53.5 11 0.00039 21.6 2.7 33 63-113 7-39 (58)
58 1lko_A Rubrerythrin all-iron(I 52.4 6 0.00021 28.2 1.6 27 51-79 155-183 (191)
59 2kwj_A Zinc finger protein DPF 51.0 5.5 0.00019 26.0 1.2 20 4-31 49-68 (114)
60 1yuz_A Nigerythrin; rubrythrin 49.6 8.6 0.00029 27.7 2.1 27 50-78 170-197 (202)
61 1f62_A Transcription factor WS 41.7 9.1 0.00031 21.0 1.0 11 5-15 39-49 (51)
62 1fp0_A KAP-1 corepressor; PHD 38.6 15 0.0005 23.2 1.6 13 4-16 60-72 (88)
63 1yuz_A Nigerythrin; rubrythrin 36.0 16 0.00054 26.3 1.7 27 101-129 170-197 (202)
64 2kdx_A HYPA, hydrogenase/ureas 33.2 27 0.00091 22.7 2.4 29 4-32 70-101 (119)
65 3ask_A E3 ubiquitin-protein li 32.3 27 0.00091 25.8 2.4 11 48-60 212-223 (226)
66 2lri_C Autoimmune regulator; Z 32.2 17 0.00058 21.4 1.1 11 5-15 48-58 (66)
67 2k4x_A 30S ribosomal protein S 32.0 16 0.00054 20.9 0.9 14 50-65 35-48 (55)
68 1mm2_A MI2-beta; PHD, zinc fin 31.9 19 0.00067 20.6 1.4 12 5-16 45-56 (61)
69 2l43_A N-teminal domain from h 31.9 18 0.00063 22.4 1.3 50 5-62 23-75 (88)
70 2lbz_A Thuricin17, thurincin H 31.7 11 0.00038 18.7 0.2 8 7-14 1-8 (31)
71 2apo_B Ribosome biogenesis pro 31.4 62 0.0021 18.8 3.5 22 53-78 8-29 (60)
72 2yql_A PHD finger protein 21A; 31.4 23 0.00078 19.8 1.6 47 5-60 7-54 (56)
73 3a43_A HYPD, hydrogenase nicke 29.8 30 0.001 23.3 2.2 13 5-17 68-80 (139)
74 2k16_A Transcription initiatio 29.3 39 0.0013 19.9 2.5 50 6-62 17-68 (75)
75 1xwh_A Autoimmune regulator; P 29.0 9.8 0.00033 22.3 -0.4 13 5-17 44-56 (66)
76 3j20_Y 30S ribosomal protein S 28.3 23 0.00078 19.8 1.2 32 20-65 18-49 (50)
77 1pft_A TFIIB, PFTFIIBN; N-term 27.9 39 0.0013 18.3 2.1 11 100-112 22-32 (50)
78 2ku3_A Bromodomain-containing 27.8 15 0.0005 22.0 0.3 49 5-61 14-65 (71)
79 2gmg_A Hypothetical protein PF 26.6 55 0.0019 21.3 3.0 30 47-79 63-96 (105)
80 4b2v_A S64; toxin, ICK; NMR {S 24.3 22 0.00076 17.7 0.5 11 3-13 14-24 (32)
81 2xzl_A ATP-dependent helicase 24.2 21 0.00073 30.8 0.8 29 1-29 5-33 (802)
82 2l5u_A Chromodomain-helicase-D 24.1 25 0.00085 20.1 0.8 49 5-62 9-58 (61)
83 3o36_A Transcription intermedi 23.6 64 0.0022 22.3 3.1 54 5-66 2-55 (184)
84 3irb_A Uncharacterized protein 22.5 37 0.0013 23.0 1.6 24 53-78 49-72 (145)
85 2yrc_A Protein transport prote 22.4 31 0.0011 19.9 1.0 14 6-19 32-45 (59)
86 2puy_A PHD finger protein 21A; 20.7 18 0.00062 20.5 -0.3 13 5-17 41-53 (60)
87 3k7a_M Transcription initiatio 20.4 83 0.0029 24.1 3.4 37 17-64 17-53 (345)
88 2gnr_A Conserved hypothetical 20.2 44 0.0015 22.7 1.6 23 53-77 49-71 (145)
No 1
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=99.76 E-value=1.6e-19 Score=119.42 Aligned_cols=75 Identities=27% Similarity=0.523 Sum_probs=26.6
Q ss_pred CCCCCeEcCccCccccccccccccCCCCCCCCCCCcc-------------cccCCccccCCCcccCCCCCCCeecCCCcC
Q 033000 3 LPGGDWMCAACQHQNFKKREACQRCGYPKYGGPDVST-------------YLCNRTEVLAGDWYCTAMNCGAHNYASRPN 69 (129)
Q Consensus 3 ~~~gdW~C~~C~~~Nf~~r~~C~~C~~prp~~~~~~~-------------~~~~~~~~~~gdW~C~~~~C~~~N~~~~~~ 69 (129)
.++|||+|+.|+++||+++.+|++|++|||....... ..+..+..++|+|+|+ .|+++|++++..
T Consensus 4 ~~~g~W~C~~C~~~N~~~~~~C~~C~~pkp~~~~~~~~~~~~~~~~~~~~~g~~~f~~~~g~W~C~--~C~~~N~a~~~~ 81 (92)
T 3gj8_B 4 GSVGSWECPVCCVSNKAEDSRCVSCTSEKPGLVSASSSNSVPVSLPSGGCLGLDKFKKPEGSWDCE--VCLVQNKADSTK 81 (92)
T ss_dssp ------------------------------------------------------------CCEECT--TTCCEECSSCSB
T ss_pred CCCcCCCCCcCCCEeccccceecccCCCCCCCCCccccccCcccccccccccccccCCCCCcccCC--cCCcCChhhccc
Confidence 4689999999999999999999999999986421100 0013456688999999 999999999999
Q ss_pred ccccCCCCCC
Q 033000 70 CYRCGAAKTD 79 (129)
Q Consensus 70 C~~C~~~~~~ 79 (129)
|+.|+++||.
T Consensus 82 C~~C~~pkp~ 91 (92)
T 3gj8_B 82 CIACESAKPG 91 (92)
T ss_dssp CTTTCCBCC-
T ss_pred ccccCCCCCC
Confidence 9999999984
No 2
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=99.69 E-value=6.9e-18 Score=111.50 Aligned_cols=79 Identities=24% Similarity=0.470 Sum_probs=26.2
Q ss_pred ccCCCcccCCCCCCCeecCCCcCccccCCCCCCcccccccccC---CCCC-----CCCCCccCceeecCCCCCceeccCC
Q 033000 47 VLAGDWYCTAMNCGAHNYASRPNCYRCGAAKTDYACANMMAYG---TDGS-----VPPGWKSGDWICNRMGCGVHNYASR 118 (129)
Q Consensus 47 ~~~gdW~C~~~~C~~~N~~~~~~C~~C~~~~~~~~~~~~~~~g---~~~~-----~~~~~~~gdW~C~~~~C~~~N~a~r 118 (129)
.++|||.|. .|+++||+++..|..|+++||........+.. ...+ +....++|+|+|. .|+++|++.+
T Consensus 4 ~~~g~W~C~--~C~~~N~~~~~~C~~C~~pkp~~~~~~~~~~~~~~~~~~~~~g~~~f~~~~g~W~C~--~C~~~N~a~~ 79 (92)
T 3gj8_B 4 GSVGSWECP--VCCVSNKAEDSRCVSCTSEKPGLVSASSSNSVPVSLPSGGCLGLDKFKKPEGSWDCE--VCLVQNKADS 79 (92)
T ss_dssp --------------------------------------------------------------CCEECT--TTCCEECSSC
T ss_pred CCCcCCCCC--cCCCEeccccceecccCCCCCCCCCccccccCcccccccccccccccCCCCCcccCC--cCCcCChhhc
Confidence 467999999 99999999999999999999864332110000 0000 1123478999999 7999999999
Q ss_pred ccccCCCCCCC
Q 033000 119 MVCYKCKTPRE 129 (129)
Q Consensus 119 ~~C~~C~~pk~ 129 (129)
.+|++|++|||
T Consensus 80 ~~C~~C~~pkp 90 (92)
T 3gj8_B 80 TKCIACESAKP 90 (92)
T ss_dssp SBCTTTCCBCC
T ss_pred ccccccCCCCC
Confidence 99999999986
No 3
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=99.39 E-value=1e-13 Score=92.45 Aligned_cols=76 Identities=24% Similarity=0.530 Sum_probs=26.5
Q ss_pred CCCCCCeEcCccCccccccccccccCCCCCCCCCCC------c-------------ccccCCccccCCCcccCCCCCCCe
Q 033000 2 SLPGGDWMCAACQHQNFKKREACQRCGYPKYGGPDV------S-------------TYLCNRTEVLAGDWYCTAMNCGAH 62 (129)
Q Consensus 2 ~~~~gdW~C~~C~~~Nf~~r~~C~~C~~prp~~~~~------~-------------~~~~~~~~~~~gdW~C~~~~C~~~ 62 (129)
+....+|.|..|.++|.+...+|..|++||+..... . ..+...+...+|.|.|. .|.++
T Consensus 4 ~~~~~~W~C~~C~~~N~~~~~kC~aC~~pr~~~~~~~~~~~~~~~s~~~~~~~~~~~gfgd~fk~~~g~W~C~--~C~~~ 81 (98)
T 3gj7_B 4 GSAGSSWQCDTCLLQNKVTDNKCIACQAAKLPLKETAKQTGIGTPSKSDKPASTSGTGFGDKFKPAIGTWDCD--TCLVQ 81 (98)
T ss_dssp -------------------------------------------------------------------CCEECT--TTCCE
T ss_pred cCCCCcccCCccccCChhhcccccccCCCCCCCcccccccCccCcccccccccccccchhhccCCCCCcccCC--cCcCC
Confidence 345678999999999999999999999999853110 0 00113466788999999 99999
Q ss_pred ecCCCcCccccCCCCCC
Q 033000 63 NYASRPNCYRCGAAKTD 79 (129)
Q Consensus 63 N~~~~~~C~~C~~~~~~ 79 (129)
|.+....|..|+++||.
T Consensus 82 N~~~~~~C~aC~tpkPg 98 (98)
T 3gj7_B 82 NKPEAVKCVACETPKPG 98 (98)
T ss_dssp ECTTCSBCTTTCCBCC-
T ss_pred ChhhcceecccCCCCCC
Confidence 99999999999999973
No 4
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=99.29 E-value=1.1e-12 Score=70.56 Aligned_cols=30 Identities=43% Similarity=0.990 Sum_probs=28.7
Q ss_pred CCCCeEcCccCccccccccccccCCCCCCC
Q 033000 4 PGGDWMCAACQHQNFKKREACQRCGYPKYG 33 (129)
Q Consensus 4 ~~gdW~C~~C~~~Nf~~r~~C~~C~~prp~ 33 (129)
|+|||+|+.|+++||++|..|++|++||+.
T Consensus 2 k~gDW~C~~C~~~Nfa~r~~C~~C~~pr~~ 31 (32)
T 2lk0_A 2 KFEDWLCNKCCLNNFRKRLKCFRCGADKFD 31 (32)
T ss_dssp CCSEEECTTTCCEEETTCCBCTTTCCBTTC
T ss_pred CCCCCCcCcCcCCcChhcceecCCCCcCCC
Confidence 689999999999999999999999999985
No 5
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=99.28 E-value=1.4e-12 Score=70.55 Aligned_cols=31 Identities=35% Similarity=1.014 Sum_probs=29.2
Q ss_pred CCCCCeEcCccCccccccccccccCCCCCCC
Q 033000 3 LPGGDWMCAACQHQNFKKREACQRCGYPKYG 33 (129)
Q Consensus 3 ~~~gdW~C~~C~~~Nf~~r~~C~~C~~prp~ 33 (129)
.++|||+|+.|+++||++|..|++|++||+.
T Consensus 2 ~~~gDW~C~~C~~~Nfa~R~~C~~C~~pk~~ 32 (33)
T 2k1p_A 2 SSANDWQCKTCSNVNWARRSECNMCNTPKYA 32 (33)
T ss_dssp CSSSSCBCSSSCCBCCTTCSBCSSSCCBTTC
T ss_pred CCCCCcccCCCCCccccccccccccCCcCCC
Confidence 4789999999999999999999999999985
No 6
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=99.24 E-value=4.1e-12 Score=73.28 Aligned_cols=34 Identities=44% Similarity=1.154 Sum_probs=31.0
Q ss_pred CCCCCCeEcC--ccCccccccccccccCCCCCCCCC
Q 033000 2 SLPGGDWMCA--ACQHQNFKKREACQRCGYPKYGGP 35 (129)
Q Consensus 2 ~~~~gdW~C~--~C~~~Nf~~r~~C~~C~~prp~~~ 35 (129)
..++|||+|+ .|+++||++|..|++|++||+.++
T Consensus 9 ~~~~GDW~C~~~~C~~~Nfa~R~~C~~C~~pr~~~~ 44 (45)
T 1n0z_A 9 RVSDGDWICPDKKCGNVNFARRTSCDRCGREKTTGP 44 (45)
T ss_dssp SSCSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCCCC
T ss_pred CCCCCCcCCCCCCCCCEEccccccccccCCcCCCCC
Confidence 3578999999 899999999999999999999763
No 7
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=99.20 E-value=5.2e-12 Score=84.09 Aligned_cols=73 Identities=27% Similarity=0.603 Sum_probs=26.2
Q ss_pred CCCcccCCCCCCCeecCCCcCccccCCCCCCcccccc------------------cccCCCCCCCCCCccCceeecCCCC
Q 033000 49 AGDWYCTAMNCGAHNYASRPNCYRCGAAKTDYACANM------------------MAYGTDGSVPPGWKSGDWICNRMGC 110 (129)
Q Consensus 49 ~gdW~C~~~~C~~~N~~~~~~C~~C~~~~~~~~~~~~------------------~~~g~~~~~~~~~~~gdW~C~~~~C 110 (129)
...|.|. .|.++|.++...|..|+++|+....... .||| +....+.|.|.|. .|
T Consensus 7 ~~~W~C~--~C~~~N~~~~~kC~aC~~pr~~~~~~~~~~~~~~~s~~~~~~~~~~~gfg----d~fk~~~g~W~C~--~C 78 (98)
T 3gj7_B 7 GSSWQCD--TCLLQNKVTDNKCIACQAAKLPLKETAKQTGIGTPSKSDKPASTSGTGFG----DKFKPAIGTWDCD--TC 78 (98)
T ss_dssp ----------------------------------------------------------------------CCEECT--TT
T ss_pred CCcccCC--ccccCChhhcccccccCCCCCCCcccccccCccCcccccccccccccchh----hccCCCCCcccCC--cC
Confidence 4689999 9999999999999999999985421100 0111 1223467999999 79
Q ss_pred CceeccCCccccCCCCCCC
Q 033000 111 GVHNYASRMVCYKCKTPRE 129 (129)
Q Consensus 111 ~~~N~a~r~~C~~C~~pk~ 129 (129)
+++|.+...+|.+|++|||
T Consensus 79 ~~~N~~~~~~C~aC~tpkP 97 (98)
T 3gj7_B 79 LVQNKPEAVKCVACETPKP 97 (98)
T ss_dssp CCEECTTCSBCTTTCCBCC
T ss_pred cCCChhhcceecccCCCCC
Confidence 9999999999999999997
No 8
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=99.19 E-value=1.3e-11 Score=66.72 Aligned_cols=31 Identities=35% Similarity=0.827 Sum_probs=28.9
Q ss_pred ccCCCcccCCCCCCCeecCCCcCccccCCCCCC
Q 033000 47 VLAGDWYCTAMNCGAHNYASRPNCYRCGAAKTD 79 (129)
Q Consensus 47 ~~~gdW~C~~~~C~~~N~~~~~~C~~C~~~~~~ 79 (129)
+++|||+|+ .|+++||++|..|++|++||+.
T Consensus 2 ~~~gDW~C~--~C~~~Nfa~R~~C~~C~~pk~~ 32 (33)
T 2k1p_A 2 SSANDWQCK--TCSNVNWARRSECNMCNTPKYA 32 (33)
T ss_dssp CSSSSCBCS--SSCCBCCTTCSBCSSSCCBTTC
T ss_pred CCCCCcccC--CCCCccccccccccccCCcCCC
Confidence 578999999 9999999999999999999874
No 9
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=99.17 E-value=1e-11 Score=66.67 Aligned_cols=30 Identities=43% Similarity=1.052 Sum_probs=28.3
Q ss_pred cCCCcccCCCCCCCeecCCCcCccccCCCCCC
Q 033000 48 LAGDWYCTAMNCGAHNYASRPNCYRCGAAKTD 79 (129)
Q Consensus 48 ~~gdW~C~~~~C~~~N~~~~~~C~~C~~~~~~ 79 (129)
+.|||+|+ .|+++||++|..|++|++|+++
T Consensus 2 k~gDW~C~--~C~~~Nfa~r~~C~~C~~pr~~ 31 (32)
T 2lk0_A 2 KFEDWLCN--KCCLNNFRKRLKCFRCGADKFD 31 (32)
T ss_dssp CCSEEECT--TTCCEEETTCCBCTTTCCBTTC
T ss_pred CCCCCCcC--cCcCCcChhcceecCCCCcCCC
Confidence 57999999 9999999999999999999975
No 10
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=99.16 E-value=2.7e-11 Score=69.82 Aligned_cols=37 Identities=43% Similarity=0.902 Sum_probs=33.2
Q ss_pred CccccCCCcccCCCCCCCeecCCCcCccccCCCCCCc
Q 033000 44 RTEVLAGDWYCTAMNCGAHNYASRPNCYRCGAAKTDY 80 (129)
Q Consensus 44 ~~~~~~gdW~C~~~~C~~~N~~~~~~C~~C~~~~~~~ 80 (129)
....++|||+|++..|+++||++|..|++|+++|+..
T Consensus 7 ~~~~~~GDW~C~~~~C~~~Nfa~R~~C~~C~~pr~~~ 43 (45)
T 1n0z_A 7 NFRVSDGDWICPDKKCGNVNFARRTSCDRCGREKTTG 43 (45)
T ss_dssp SCSSCSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCCC
T ss_pred cCCCCCCCcCCCCCCCCCEEccccccccccCCcCCCC
Confidence 4567889999997789999999999999999999864
No 11
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=98.76 E-value=3.6e-09 Score=56.94 Aligned_cols=31 Identities=39% Similarity=0.792 Sum_probs=26.7
Q ss_pred CCCCCeEcCccCccccccccccccCCCCCCC
Q 033000 3 LPGGDWMCAACQHQNFKKREACQRCGYPKYG 33 (129)
Q Consensus 3 ~~~gdW~C~~C~~~Nf~~r~~C~~C~~prp~ 33 (129)
..+|+|+|+.|+++|.+...+|..|++|||+
T Consensus 3 ~~~g~W~C~~C~~~N~~~~~kC~aC~tpkPg 33 (33)
T 3gj3_B 3 LGSGTWDCDTCLVQNKPEAVKCVACETPKPG 33 (33)
T ss_dssp ---CCEECTTTCCEECTTCSBCTTTCCBCC-
T ss_pred CCCCceeCCcccCCCccccCEEcccCCCCCC
Confidence 4679999999999999999999999999984
No 12
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=98.71 E-value=5.6e-09 Score=56.49 Aligned_cols=31 Identities=35% Similarity=0.731 Sum_probs=25.8
Q ss_pred CCCCCeEcCccCccccccccccccCCCCCCC
Q 033000 3 LPGGDWMCAACQHQNFKKREACQRCGYPKYG 33 (129)
Q Consensus 3 ~~~gdW~C~~C~~~Nf~~r~~C~~C~~prp~ 33 (129)
++.|+|+|+.|.++|.+...+|..|++|||+
T Consensus 3 ~~~G~W~C~~C~v~N~~~~~kC~aCet~Kpg 33 (34)
T 3gj5_B 3 LGSGSWDCEVCLVQNKADSTKCIACESAKPG 33 (34)
T ss_dssp ---CCEECTTTCCEECSSCSBCTTTCCBC--
T ss_pred CCCCceECCeeEeECccccCEEcccCCcCCC
Confidence 4689999999999999999999999999986
No 13
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=7.9e-08 Score=55.53 Aligned_cols=33 Identities=36% Similarity=0.612 Sum_probs=30.5
Q ss_pred CCCCCCeEcCccCccccccccccccCCCCCCCC
Q 033000 2 SLPGGDWMCAACQHQNFKKREACQRCGYPKYGG 34 (129)
Q Consensus 2 ~~~~gdW~C~~C~~~Nf~~r~~C~~C~~prp~~ 34 (129)
+.++|.|+|..|.+.|.+.+.+|+.|++||+..
T Consensus 6 ~~~~g~W~C~~C~v~N~a~~~kC~aCetpKpgs 38 (47)
T 2ebq_A 6 SGVIGTWDCDTCLVQNKPEAIKCVACETPKPGT 38 (47)
T ss_dssp CCCSSSEECSSSCCEECSSCSBCSSSCCBCSCS
T ss_pred CCCCCceECCeeeccCccCCceecCcCCCCCCC
Confidence 456799999999999999999999999999975
No 14
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=8.5e-08 Score=55.44 Aligned_cols=33 Identities=36% Similarity=0.684 Sum_probs=30.4
Q ss_pred CCCCCCeEcCccCccccccccccccCCCCCCCC
Q 033000 2 SLPGGDWMCAACQHQNFKKREACQRCGYPKYGG 34 (129)
Q Consensus 2 ~~~~gdW~C~~C~~~Nf~~r~~C~~C~~prp~~ 34 (129)
..+.|.|+|..|.+.|.+.+.+|+.|++|||..
T Consensus 6 k~~~gsW~C~~C~v~N~a~~~kC~aC~~pkpg~ 38 (47)
T 2ebr_A 6 SGPEGSWDCELCLVQNKADSTKCLACESAKPGT 38 (47)
T ss_dssp SSCCSSCCCSSSCCCCCSSCSBCSSSCCBCCCC
T ss_pred cCCCCeeECCeeecCCcCCcceecCcCCCCCCC
Confidence 346799999999999999999999999999975
No 15
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=98.44 E-value=1.2e-07 Score=50.93 Aligned_cols=32 Identities=25% Similarity=0.644 Sum_probs=26.5
Q ss_pred cccCCCcccCCCCCCCeecCCCcCccccCCCCCC
Q 033000 46 EVLAGDWYCTAMNCGAHNYASRPNCYRCGAAKTD 79 (129)
Q Consensus 46 ~~~~gdW~C~~~~C~~~N~~~~~~C~~C~~~~~~ 79 (129)
++.+|.|.|+ .|.++|.+....|..|.+|||.
T Consensus 2 ~~~~g~W~C~--~C~~~N~~~~~kC~aC~tpkPg 33 (33)
T 3gj3_B 2 PLGSGTWDCD--TCLVQNKPEAVKCVACETPKPG 33 (33)
T ss_dssp ----CCEECT--TTCCEECTTCSBCTTTCCBCC-
T ss_pred CCCCCceeCC--cccCCCccccCEEcccCCCCCC
Confidence 3567999999 9999999999999999999973
No 16
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=98.32 E-value=3.1e-07 Score=49.57 Aligned_cols=32 Identities=31% Similarity=0.700 Sum_probs=25.7
Q ss_pred cccCCCcccCCCCCCCeecCCCcCccccCCCCCC
Q 033000 46 EVLAGDWYCTAMNCGAHNYASRPNCYRCGAAKTD 79 (129)
Q Consensus 46 ~~~~gdW~C~~~~C~~~N~~~~~~C~~C~~~~~~ 79 (129)
++++|.|.|. .|.+.|.++...|..|.++||.
T Consensus 2 ~~~~G~W~C~--~C~v~N~~~~~kC~aCet~Kpg 33 (34)
T 3gj5_B 2 PLGSGSWDCE--VCLVQNKADSTKCIACESAKPG 33 (34)
T ss_dssp ----CCEECT--TTCCEECSSCSBCTTTCCBC--
T ss_pred CCCCCceECC--eeEeECccccCEEcccCCcCCC
Confidence 3578999999 9999999999999999999975
No 17
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=7.3e-07 Score=51.47 Aligned_cols=36 Identities=28% Similarity=0.574 Sum_probs=33.0
Q ss_pred CccccCCCcccCCCCCCCeecCCCcCccccCCCCCCcc
Q 033000 44 RTEVLAGDWYCTAMNCGAHNYASRPNCYRCGAAKTDYA 81 (129)
Q Consensus 44 ~~~~~~gdW~C~~~~C~~~N~~~~~~C~~C~~~~~~~~ 81 (129)
++...+|.|.|. .|.+.|.+.+..|..|++|++...
T Consensus 4 ~fk~~~gsW~C~--~C~v~N~a~~~kC~aC~~pkpg~~ 39 (47)
T 2ebr_A 4 GSSGPEGSWDCE--LCLVQNKADSTKCLACESAKPGTK 39 (47)
T ss_dssp SCSSCCSSCCCS--SSCCCCCSSCSBCSSSCCBCCCCC
T ss_pred cccCCCCeeECC--eeecCCcCCcceecCcCCCCCCCc
Confidence 567788999999 999999999999999999998764
No 18
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=6e-07 Score=53.82 Aligned_cols=32 Identities=31% Similarity=0.668 Sum_probs=29.3
Q ss_pred CCCCCCeEcCccCccccccccccccCCCCCCC
Q 033000 2 SLPGGDWMCAACQHQNFKKREACQRCGYPKYG 33 (129)
Q Consensus 2 ~~~~gdW~C~~C~~~Nf~~r~~C~~C~~prp~ 33 (129)
..+.|.|+|..|.+.|.+...+|+.|++|||.
T Consensus 26 K~~~GsWeC~~C~V~N~a~~~kC~ACetpKPG 57 (57)
T 2ebv_A 26 KRPIGSWECSVCCVSNNAEDNKCVSCMSEKPG 57 (57)
T ss_dssp CCCSSSCCCSSSCCCCCSSCSBCSSSCCBCCC
T ss_pred CCCCCeeeCCeeEccCccCCceeeEcCCcCCC
Confidence 35679999999999999999999999999984
No 19
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=1.3e-06 Score=50.35 Aligned_cols=31 Identities=32% Similarity=0.770 Sum_probs=28.3
Q ss_pred CCccCceeecCCCCCceeccCCccccCCCCCCC
Q 033000 97 GWKSGDWICNRMGCGVHNYASRMVCYKCKTPRE 129 (129)
Q Consensus 97 ~~~~gdW~C~~~~C~~~N~a~r~~C~~C~~pk~ 129 (129)
..++|.|.|. +|.+.|.+...+|++|++||+
T Consensus 6 ~~~~g~W~C~--~C~v~N~a~~~kC~aCetpKp 36 (47)
T 2ebq_A 6 SGVIGTWDCD--TCLVQNKPEAIKCVACETPKP 36 (47)
T ss_dssp CCCSSSEECS--SSCCEECSSCSBCSSSCCBCS
T ss_pred CCCCCceECC--eeeccCccCCceecCcCCCCC
Confidence 4567999999 899999999999999999985
No 20
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.13 E-value=2e-06 Score=50.89 Aligned_cols=33 Identities=27% Similarity=0.513 Sum_probs=29.8
Q ss_pred CCCCCCeEcCccCccccccccccccCCCCCCCC
Q 033000 2 SLPGGDWMCAACQHQNFKKREACQRCGYPKYGG 34 (129)
Q Consensus 2 ~~~~gdW~C~~C~~~Nf~~r~~C~~C~~prp~~ 34 (129)
+..++.|.|+.|++.|......|.+|.+||+..
T Consensus 6 ~~~~~~W~C~~CT~~N~~~~~~C~~C~~pr~~s 38 (53)
T 2d9g_A 6 SGDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTS 38 (53)
T ss_dssp SSCCCCEECSSSCCEECSSCSSCSSSCCCCCCC
T ss_pred CCCCCCcCCCCCccCCCCCCCccCCCCCcCCcc
Confidence 345689999999999999999999999999964
No 21
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.96 E-value=9.1e-06 Score=47.97 Aligned_cols=30 Identities=27% Similarity=0.643 Sum_probs=26.9
Q ss_pred CccCceeecCCCCCceeccCCccccCCCCCCC
Q 033000 98 WKSGDWICNRMGCGVHNYASRMVCYKCKTPRE 129 (129)
Q Consensus 98 ~~~gdW~C~~~~C~~~N~a~r~~C~~C~~pk~ 129 (129)
...+.|.|+ .|+|+|.+....|.+|..||+
T Consensus 7 ~~~~~W~C~--~CT~~N~~~~~~C~~C~~pr~ 36 (53)
T 2d9g_A 7 GDEGYWDCS--VCTFRNSAEAFKCMMCDVRKG 36 (53)
T ss_dssp SCCCCEECS--SSCCEECSSCSSCSSSCCCCC
T ss_pred CCCCCcCCC--CCccCCCCCCCccCCCCCcCC
Confidence 346789999 799999999999999999985
No 22
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.85 E-value=3e-05 Score=46.34 Aligned_cols=35 Identities=26% Similarity=0.619 Sum_probs=32.5
Q ss_pred CCccccCCCcccCCCCCCCeecCCCcCccccCCCCCC
Q 033000 43 NRTEVLAGDWYCTAMNCGAHNYASRPNCYRCGAAKTD 79 (129)
Q Consensus 43 ~~~~~~~gdW~C~~~~C~~~N~~~~~~C~~C~~~~~~ 79 (129)
..+.+.+|.|.|. .|.+.|.+....|..|++|+|.
T Consensus 23 ~~FK~~~GsWeC~--~C~V~N~a~~~kC~ACetpKPG 57 (57)
T 2ebv_A 23 DKFKRPIGSWECS--VCCVSNNAEDNKCVSCMSEKPG 57 (57)
T ss_dssp SCCCCCSSSCCCS--SSCCCCCSSCSBCSSSCCBCCC
T ss_pred HhcCCCCCeeeCC--eeEccCccCCceeeEcCCcCCC
Confidence 5688889999999 9999999999999999999873
No 23
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=97.72 E-value=2.2e-05 Score=41.98 Aligned_cols=29 Identities=31% Similarity=0.832 Sum_probs=26.6
Q ss_pred CCCCeEcCccCccccccccccccCCCCCC
Q 033000 4 PGGDWMCAACQHQNFKKREACQRCGYPKY 32 (129)
Q Consensus 4 ~~gdW~C~~C~~~Nf~~r~~C~~C~~prp 32 (129)
....|.|+.|+++|......|.+|.++|+
T Consensus 5 ~~~~W~C~~CT~~N~~~~~~Ce~C~~~r~ 33 (34)
T 3a9j_C 5 MGAQWNCTACTFLNHPALIRCEQCEMPRH 33 (34)
T ss_dssp CCCCEECTTTCCEECTTCSBCTTTCCBSC
T ss_pred CCCcCCCCCCccccCCCCCeeCCCCCcCc
Confidence 34689999999999999999999999986
No 24
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=97.61 E-value=4.1e-05 Score=40.94 Aligned_cols=28 Identities=29% Similarity=0.841 Sum_probs=25.5
Q ss_pred cCceeecCCCCCceeccCCccccCCCCCCC
Q 033000 100 SGDWICNRMGCGVHNYASRMVCYKCKTPRE 129 (129)
Q Consensus 100 ~gdW~C~~~~C~~~N~a~r~~C~~C~~pk~ 129 (129)
...|.|+ .|+|.|.+....|.+|..+|+
T Consensus 6 ~~~W~C~--~CT~~N~~~~~~Ce~C~~~r~ 33 (34)
T 3a9j_C 6 GAQWNCT--ACTFLNHPALIRCEQCEMPRH 33 (34)
T ss_dssp CCCEECT--TTCCEECTTCSBCTTTCCBSC
T ss_pred CCcCCCC--CCccccCCCCCeeCCCCCcCc
Confidence 4579999 799999999999999999885
No 25
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=97.60 E-value=6.5e-05 Score=39.29 Aligned_cols=28 Identities=32% Similarity=0.715 Sum_probs=25.3
Q ss_pred cCceeecCCCCCceeccCCccccCCCCCCC
Q 033000 100 SGDWICNRMGCGVHNYASRMVCYKCKTPRE 129 (129)
Q Consensus 100 ~gdW~C~~~~C~~~N~a~r~~C~~C~~pk~ 129 (129)
...|.|+ .|+|+|......|.+|+.++.
T Consensus 4 ~~~W~C~--~CTf~N~~~~~~Ce~C~~~r~ 31 (31)
T 1nj3_A 4 SAMWACQ--HCTFMNQPGTGHCEMCSLPRT 31 (31)
T ss_dssp SCCEECS--SSCCEECSSCSSCSSSCCCCC
T ss_pred CccccCC--cccccCCCCCCccCCcCCCCC
Confidence 3579999 799999999999999999874
No 26
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=97.36 E-value=0.00015 Score=37.87 Aligned_cols=26 Identities=23% Similarity=0.667 Sum_probs=24.5
Q ss_pred CCcccCCCCCCCeecCCCcCccccCCCC
Q 033000 50 GDWYCTAMNCGAHNYASRPNCYRCGAAK 77 (129)
Q Consensus 50 gdW~C~~~~C~~~N~~~~~~C~~C~~~~ 77 (129)
..|.|+ .|+++|......|.+|+.++
T Consensus 5 ~~W~C~--~CTf~N~~~~~~Ce~C~~~r 30 (31)
T 1nj3_A 5 AMWACQ--HCTFMNQPGTGHCEMCSLPR 30 (31)
T ss_dssp CCEECS--SSCCEECSSCSSCSSSCCCC
T ss_pred ccccCC--cccccCCCCCCccCCcCCCC
Confidence 589999 99999999999999999886
No 27
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}
Probab=97.00 E-value=0.0005 Score=40.25 Aligned_cols=30 Identities=23% Similarity=0.597 Sum_probs=27.7
Q ss_pred CCCeEcCccCccccccccccccCCCCCCCC
Q 033000 5 GGDWMCAACQHQNFKKREACQRCGYPKYGG 34 (129)
Q Consensus 5 ~gdW~C~~C~~~Nf~~r~~C~~C~~prp~~ 34 (129)
+..|.|+.|++.|......|-+|.++++..
T Consensus 8 ~~~W~Cp~CTf~N~p~~~~CemC~~prp~~ 37 (52)
T 2crc_A 8 PVGWQCPGCTFINKPTRPGCEMCCRARPEA 37 (52)
T ss_dssp SSSBCCTTTCCCBCTTCSSCSSSCCCCCTT
T ss_pred CCCccCCCcccccCCCCCeeCCCCCcCCcc
Confidence 458999999999999999999999999865
No 28
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}
Probab=96.85 E-value=0.00065 Score=39.77 Aligned_cols=28 Identities=32% Similarity=0.689 Sum_probs=25.2
Q ss_pred cCceeecCCCCCceeccCCccccCCCCCCC
Q 033000 100 SGDWICNRMGCGVHNYASRMVCYKCKTPRE 129 (129)
Q Consensus 100 ~gdW~C~~~~C~~~N~a~r~~C~~C~~pk~ 129 (129)
...|.|+ .|+|+|......|.+|..+++
T Consensus 8 ~~~W~Cp--~CTf~N~p~~~~CemC~~prp 35 (52)
T 2crc_A 8 PVGWQCP--GCTFINKPTRPGCEMCCRARP 35 (52)
T ss_dssp SSSBCCT--TTCCCBCTTCSSCSSSCCCCC
T ss_pred CCCccCC--CcccccCCCCCeeCCCCCcCC
Confidence 3479999 799999999999999999875
No 29
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*
Probab=96.68 E-value=0.0012 Score=40.15 Aligned_cols=30 Identities=23% Similarity=0.579 Sum_probs=27.7
Q ss_pred CCCeEcCccCccccccccccccCCCCCCCC
Q 033000 5 GGDWMCAACQHQNFKKREACQRCGYPKYGG 34 (129)
Q Consensus 5 ~gdW~C~~C~~~Nf~~r~~C~~C~~prp~~ 34 (129)
...|.|+.|++.|......|-+|.++++..
T Consensus 6 ~~~W~CP~CTf~N~p~~p~CEmC~~prp~~ 35 (64)
T 3b08_B 6 PVGWQCPGCTFINKPTRPGCEMCCRARPET 35 (64)
T ss_dssp CCSEECTTTCCEECTTCSBCTTTCCBCCSS
T ss_pred CCCCcCCCccccCCCCCCccCcCCCCCCcc
Confidence 458999999999999999999999999865
No 30
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*
Probab=96.61 E-value=0.0012 Score=40.25 Aligned_cols=27 Identities=33% Similarity=0.710 Sum_probs=24.8
Q ss_pred CceeecCCCCCceeccCCccccCCCCCCC
Q 033000 101 GDWICNRMGCGVHNYASRMVCYKCKTPRE 129 (129)
Q Consensus 101 gdW~C~~~~C~~~N~a~r~~C~~C~~pk~ 129 (129)
..|.|+ .|+|+|......|.+|+++++
T Consensus 7 ~~W~CP--~CTf~N~p~~p~CEmC~~prp 33 (64)
T 3b08_B 7 VGWQCP--GCTFINKPTRPGCEMCCRARP 33 (64)
T ss_dssp CSEECT--TTCCEECTTCSBCTTTCCBCC
T ss_pred CCCcCC--CccccCCCCCCccCcCCCCCC
Confidence 469999 799999999999999999875
No 31
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=95.80 E-value=0.0061 Score=34.55 Aligned_cols=28 Identities=25% Similarity=0.608 Sum_probs=25.8
Q ss_pred CCeEcCccCccccccccccccCCCCCCC
Q 033000 6 GDWMCAACQHQNFKKREACQRCGYPKYG 33 (129)
Q Consensus 6 gdW~C~~C~~~Nf~~r~~C~~C~~prp~ 33 (129)
+.|.|..|...|++....|++|-+-|..
T Consensus 12 D~WkC~~C~~~N~Pl~r~C~rCw~LRk~ 39 (46)
T 2c6a_A 12 DYWKCTSCNEMNPPLPSHCNRCWALREN 39 (46)
T ss_dssp GCEECTTTCCEECSSCSSCTTTCCCCSS
T ss_pred ceEecccccccCCCccchhhHHHhhccc
Confidence 6899999999999999999999998763
No 32
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=94.71 E-value=0.024 Score=32.07 Aligned_cols=27 Identities=33% Similarity=0.748 Sum_probs=25.3
Q ss_pred CCcccCCCCCCCeecCCCcCccccCCCCC
Q 033000 50 GDWYCTAMNCGAHNYASRPNCYRCGAAKT 78 (129)
Q Consensus 50 gdW~C~~~~C~~~N~~~~~~C~~C~~~~~ 78 (129)
+.|.|. .|..+|.+....|.+|-+-|.
T Consensus 12 D~WkC~--~C~~~N~Pl~r~C~rCw~LRk 38 (46)
T 2c6a_A 12 DYWKCT--SCNEMNPPLPSHCNRCWALRE 38 (46)
T ss_dssp GCEECT--TTCCEECSSCSSCTTTCCCCS
T ss_pred ceEecc--cccccCCCccchhhHHHhhcc
Confidence 689999 999999999999999998875
No 33
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=94.63 E-value=0.0058 Score=51.34 Aligned_cols=76 Identities=20% Similarity=0.336 Sum_probs=0.0
Q ss_pred CCCcccCCCCCCCeecCC---------CcCccccCCCCCCcccc--c--ccccCCCC-CCCCCCccCceeecCCCCCcee
Q 033000 49 AGDWYCTAMNCGAHNYAS---------RPNCYRCGAAKTDYACA--N--MMAYGTDG-SVPPGWKSGDWICNRMGCGVHN 114 (129)
Q Consensus 49 ~gdW~C~~~~C~~~N~~~---------~~~C~~C~~~~~~~~~~--~--~~~~g~~~-~~~~~~~~gdW~C~~~~C~~~N 114 (129)
...|+|+ -|++.|-.. .-.|..||-+.+..... . +.-..... ...+.....+-.|+ .|+|.|
T Consensus 115 ~~tWvC~--ICsfsN~~~~~f~~~~~~~p~C~~CGi~p~~~~~k~~i~~~~~~~~~~~~~~~~~~~~~~~CP--~CTF~N 190 (566)
T 1w7p_D 115 VSTWVCP--ICMVSNETQGEFTKDTLPTPICINCGVPADYELTKSSINCSNAIDPNANPQNQFGVNSENICP--ACTFAN 190 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccceecc--ccccCCCCCCCCCcccCCCCcccccCCCCchhhhhhhhhccccCCCcccCccccccccCCCCC--cccccC
Confidence 4679999 999999863 34588898775432110 0 00000000 00001112457799 699999
Q ss_pred ccCCccccCCCCCC
Q 033000 115 YASRMVCYKCKTPR 128 (129)
Q Consensus 115 ~a~r~~C~~C~~pk 128 (129)
.++...|++|+++.
T Consensus 191 HPsl~~CEiCg~~L 204 (566)
T 1w7p_D 191 HPQIGNCEICGHRL 204 (566)
T ss_dssp --------------
T ss_pred ChhhhcccccCCcC
Confidence 99999999999874
No 34
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=94.31 E-value=0.0076 Score=50.65 Aligned_cols=72 Identities=22% Similarity=0.438 Sum_probs=0.0
Q ss_pred CCeEcCccCcccccc---------ccccccCCCCCCCCCCCcc--cc--------cCCccccCCCcccCCCCCCCeecCC
Q 033000 6 GDWMCAACQHQNFKK---------REACQRCGYPKYGGPDVST--YL--------CNRTEVLAGDWYCTAMNCGAHNYAS 66 (129)
Q Consensus 6 gdW~C~~C~~~Nf~~---------r~~C~~C~~prp~~~~~~~--~~--------~~~~~~~~gdW~C~~~~C~~~N~~~ 66 (129)
..|+|+-|.+.|... .-.|..|+.+.+.....+. .. .........+=.|+ .|+|+|-++
T Consensus 116 ~tWvC~ICsfsN~~~~~f~~~~~~~p~C~~CGi~p~~~~~k~~i~~~~~~~~~~~~~~~~~~~~~~~CP--~CTF~NHPs 193 (566)
T 1w7p_D 116 STWVCPICMVSNETQGEFTKDTLPTPICINCGVPADYELTKSSINCSNAIDPNANPQNQFGVNSENICP--ACTFANHPQ 193 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cceeccccccCCCCCCCCCcccCCCCcccccCCCCchhhhhhhhhccccCCCcccCccccccccCCCCC--cccccCChh
Confidence 579999999999863 3469999998764321100 00 00111112356799 999999999
Q ss_pred CcCccccCCCCCC
Q 033000 67 RPNCYRCGAAKTD 79 (129)
Q Consensus 67 ~~~C~~C~~~~~~ 79 (129)
-..|..||++-+.
T Consensus 194 l~~CEiCg~~L~~ 206 (566)
T 1w7p_D 194 IGNCEICGHRLPN 206 (566)
T ss_dssp -------------
T ss_pred hhcccccCCcCCC
Confidence 9999999998765
No 35
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=91.72 E-value=0.18 Score=29.13 Aligned_cols=30 Identities=23% Similarity=0.638 Sum_probs=26.4
Q ss_pred CCCCeEcCccCccccccccccccCCCCCCC
Q 033000 4 PGGDWMCAACQHQNFKKREACQRCGYPKYG 33 (129)
Q Consensus 4 ~~gdW~C~~C~~~Nf~~r~~C~~C~~prp~ 33 (129)
.+.-|.|..|...|..-...|.+|-+-|..
T Consensus 8 ~eD~WkC~~C~k~N~Pl~ryC~rCwaLRk~ 37 (53)
T 2cr8_A 8 SEDEWQCTECKKFNSPSKRYCFRCWALRKD 37 (53)
T ss_dssp CSCCEECSSSCCEECSSCCBCTTTCCBCCC
T ss_pred CcceeecccccccCCCccchhHHHHHhhcc
Confidence 456799999999999999999999997753
No 36
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=90.24 E-value=0.55 Score=28.69 Aligned_cols=48 Identities=21% Similarity=0.387 Sum_probs=27.1
Q ss_pred CCCCCCCeEcCccCccccccccccccCCCCCCCCCCCcccccCCccccCCCcccCCCCCCC
Q 033000 1 MSLPGGDWMCAACQHQNFKKREACQRCGYPKYGGPDVSTYLCNRTEVLAGDWYCTAMNCGA 61 (129)
Q Consensus 1 ~~~~~gdW~C~~C~~~Nf~~r~~C~~C~~prp~~~~~~~~~~~~~~~~~gdW~C~~~~C~~ 61 (129)
|...-..|.|..|++.=.... +-|...- .++ ..+...+.||.|+ .|+.
T Consensus 1 m~~~m~~y~C~vCGyiYd~~~------Gdp~~gi-~pG----T~f~~lPddw~CP--~Cga 48 (70)
T 1dx8_A 1 MEIDEGKYECEACGYIYEPEK------GDKFAGI-PPG----TPFVDLSDSFMCP--ACRS 48 (70)
T ss_dssp CBCCSSCEEETTTCCEECTTT------CCTTTTC-CSS----CCGGGSCTTCBCT--TTCC
T ss_pred CCCCCceEEeCCCCEEEcCCC------CCcccCc-CCC----CchhhCCCCCcCC--CCCC
Confidence 666667899999987733211 1111110 011 2456677899999 5443
No 37
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=86.39 E-value=0.93 Score=26.07 Aligned_cols=30 Identities=37% Similarity=0.892 Sum_probs=26.3
Q ss_pred cCCCcccCCCCCCCeecCCCcCccccCCCCCC
Q 033000 48 LAGDWYCTAMNCGAHNYASRPNCYRCGAAKTD 79 (129)
Q Consensus 48 ~~gdW~C~~~~C~~~N~~~~~~C~~C~~~~~~ 79 (129)
.++-|.|. .|.-.|.+....|.+|-+-|..
T Consensus 8 ~eD~WkC~--~C~k~N~Pl~ryC~rCwaLRk~ 37 (53)
T 2cr8_A 8 SEDEWQCT--ECKKFNSPSKRYCFRCWALRKD 37 (53)
T ss_dssp CSCCEECS--SSCCEECSSCCBCTTTCCBCCC
T ss_pred Ccceeecc--cccccCCCccchhHHHHHhhcc
Confidence 45679999 9999999999999999888753
No 38
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=82.20 E-value=0.7 Score=27.08 Aligned_cols=25 Identities=24% Similarity=0.511 Sum_probs=22.7
Q ss_pred CCeEcCccCccccccccccccCCCC
Q 033000 6 GDWMCAACQHQNFKKREACQRCGYP 30 (129)
Q Consensus 6 gdW~C~~C~~~Nf~~r~~C~~C~~p 30 (129)
..++|-.|+..|....+.|.+|+..
T Consensus 18 ~k~ICrkC~ARnp~~A~~CRKCg~~ 42 (56)
T 2ayj_A 18 LKKVCRKCGALNPIRATKCRRCHST 42 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCCC
T ss_pred chhhhccccCcCCcccccccCCCCC
Confidence 4689999999999999999999864
No 39
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=80.54 E-value=2 Score=26.99 Aligned_cols=43 Identities=28% Similarity=0.675 Sum_probs=23.1
Q ss_pred CCeEcCccCccccccccccccCCCCCCCCCCCcccccCCccccCCCcccCCCCCCC
Q 033000 6 GDWMCAACQHQNFKKREACQRCGYPKYGGPDVSTYLCNRTEVLAGDWYCTAMNCGA 61 (129)
Q Consensus 6 gdW~C~~C~~~Nf~~r~~C~~C~~prp~~~~~~~~~~~~~~~~~gdW~C~~~~C~~ 61 (129)
..|.|..|++.-.... +-|...- .++ ..+...+.||.|+ .|+.
T Consensus 26 ~~y~C~vCGyvYD~~~------Gdp~~gI-~pG----T~fedlPddW~CP--vCga 68 (81)
T 2kn9_A 26 KLFRCIQCGFEYDEAL------GWPEDGI-AAG----TRWDDIPDDWSCP--DCGA 68 (81)
T ss_dssp CEEEETTTCCEEETTT------CBTTTTB-CTT----CCTTTSCTTCCCT--TTCC
T ss_pred ceEEeCCCCEEEcCCc------CCcccCc-CCC----CChhHCCCCCcCC--CCCC
Confidence 3699999987733211 1111100 011 2456667899999 5554
No 40
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=80.19 E-value=3.8 Score=23.36 Aligned_cols=16 Identities=50% Similarity=1.086 Sum_probs=11.9
Q ss_pred CccccCCCcccCCCCCCC
Q 033000 44 RTEVLAGDWYCTAMNCGA 61 (129)
Q Consensus 44 ~~~~~~gdW~C~~~~C~~ 61 (129)
.+...+.||.|+ .|+.
T Consensus 29 ~f~~lP~dw~CP--~Cg~ 44 (52)
T 1e8j_A 29 KFEDLPDDWACP--VCGA 44 (52)
T ss_dssp CTTSSCTTCCCS--SSCC
T ss_pred chHHCCCCCcCC--CCCC
Confidence 466668899999 6654
No 41
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=80.09 E-value=2.3 Score=24.31 Aligned_cols=16 Identities=50% Similarity=1.093 Sum_probs=12.1
Q ss_pred CccccCCCcccCCCCCCC
Q 033000 44 RTEVLAGDWYCTAMNCGA 61 (129)
Q Consensus 44 ~~~~~~gdW~C~~~~C~~ 61 (129)
.+...+.||.|+ .|+.
T Consensus 28 ~f~~lP~dw~CP--~Cg~ 43 (52)
T 1yk4_A 28 KFEDLPDDWVCP--LCGA 43 (52)
T ss_dssp CGGGSCTTCBCT--TTCC
T ss_pred CHhHCCCCCcCC--CCCC
Confidence 466678899999 6664
No 42
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=80.03 E-value=2.3 Score=24.64 Aligned_cols=16 Identities=44% Similarity=1.151 Sum_probs=11.9
Q ss_pred CccccCCCcccCCCCCCC
Q 033000 44 RTEVLAGDWYCTAMNCGA 61 (129)
Q Consensus 44 ~~~~~~gdW~C~~~~C~~ 61 (129)
.+...+.||.|+ .|+.
T Consensus 29 ~f~~lP~dw~CP--~Cga 44 (55)
T 2v3b_B 29 RWEDIPADWVCP--DCGV 44 (55)
T ss_dssp CGGGSCTTCCCT--TTCC
T ss_pred ChhHCCCCCcCC--CCCC
Confidence 466678899999 6654
No 43
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=77.50 E-value=1.1 Score=25.69 Aligned_cols=24 Identities=29% Similarity=0.863 Sum_probs=14.5
Q ss_pred CeEcCccCccccccccccccCCCC
Q 033000 7 DWMCAACQHQNFKKREACQRCGYP 30 (129)
Q Consensus 7 dW~C~~C~~~Nf~~r~~C~~C~~p 30 (129)
..+|+.|+..|-.....|.+|+..
T Consensus 14 k~iCpkC~a~~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 14 KYVCLRCGATNPWGAKKCRKCGYK 37 (51)
T ss_dssp EEECTTTCCEECTTCSSCSSSSSC
T ss_pred CccCCCCCCcCCCCceecCCCCCc
Confidence 456666666666655555555543
No 44
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=76.51 E-value=3.1 Score=26.40 Aligned_cols=43 Identities=33% Similarity=0.707 Sum_probs=23.4
Q ss_pred CCeEcCccCccccccccccccCCCCCCCCCCCcccccCCccccCCCcccCCCCCCC
Q 033000 6 GDWMCAACQHQNFKKREACQRCGYPKYGGPDVSTYLCNRTEVLAGDWYCTAMNCGA 61 (129)
Q Consensus 6 gdW~C~~C~~~Nf~~r~~C~~C~~prp~~~~~~~~~~~~~~~~~gdW~C~~~~C~~ 61 (129)
..|.|..|++.-.... +-|...- .++ -.+...+.||.|+ .|+.
T Consensus 34 ~~y~C~vCGyvYD~~~------Gdp~~gI-~pG----T~fedlPddW~CP--vCga 76 (87)
T 1s24_A 34 LKWICITCGHIYDEAL------GDEAEGF-TPG----TRFEDIPDDWCCP--DCGA 76 (87)
T ss_dssp CEEEETTTTEEEETTS------CCTTTTC-CSC----CCGGGCCTTCCCS--SSCC
T ss_pred ceEECCCCCeEecCCc------CCcccCc-CCC----CChhHCCCCCCCC--CCCC
Confidence 3699999987633211 1111110 011 2466677899999 6654
No 45
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=74.25 E-value=1.6 Score=27.13 Aligned_cols=18 Identities=28% Similarity=0.698 Sum_probs=15.2
Q ss_pred CCeEcCccCccccccccc
Q 033000 6 GDWMCAACQHQNFKKREA 23 (129)
Q Consensus 6 gdW~C~~C~~~Nf~~r~~ 23 (129)
.+|.|+-|.+.|.....+
T Consensus 16 ~tWVCpICsfsN~v~s~f 33 (76)
T 2j9u_B 16 STWVCPICMVSNETQGEF 33 (76)
T ss_dssp EEEECTTTCCEEEESSCC
T ss_pred cceECccccccCcCcccc
Confidence 479999999999877665
No 46
>4b2u_A S67; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=72.36 E-value=0.95 Score=23.36 Aligned_cols=13 Identities=38% Similarity=1.165 Sum_probs=10.4
Q ss_pred ccccCCCcccCCCCC
Q 033000 45 TEVLAGDWYCTAMNC 59 (129)
Q Consensus 45 ~~~~~gdW~C~~~~C 59 (129)
..+++|||-|. .|
T Consensus 12 pnpregdwcch--kc 24 (36)
T 4b2u_A 12 PNPREGDWCCH--KC 24 (36)
T ss_dssp CCGGGCCSSSS--EE
T ss_pred cCCCccCeeee--cc
Confidence 45788999998 66
No 47
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=70.91 E-value=4.4 Score=26.36 Aligned_cols=19 Identities=26% Similarity=0.906 Sum_probs=14.7
Q ss_pred CCCCeEcCccCccccccccccccCCCC
Q 033000 4 PGGDWMCAACQHQNFKKREACQRCGYP 30 (129)
Q Consensus 4 ~~gdW~C~~C~~~Nf~~r~~C~~C~~p 30 (129)
+.++|.|+.|. .|..|+..
T Consensus 52 ~~~~W~C~~C~--------~C~vC~~~ 70 (112)
T 3v43_A 52 KALRWQCIECK--------TCSSCRDQ 70 (112)
T ss_dssp HTSCCCCTTTC--------CBTTTCCC
T ss_pred hccccccccCC--------ccccccCc
Confidence 46899999995 57777764
No 48
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=67.63 E-value=2.2 Score=27.67 Aligned_cols=21 Identities=29% Similarity=0.903 Sum_probs=15.5
Q ss_pred CCCCeEcCccCccccccccccccCCCCCC
Q 033000 4 PGGDWMCAACQHQNFKKREACQRCGYPKY 32 (129)
Q Consensus 4 ~~gdW~C~~C~~~Nf~~r~~C~~C~~prp 32 (129)
+.++|.|+.|. .|..|+....
T Consensus 45 ~~~~W~C~~C~--------~C~~C~~~~~ 65 (111)
T 2ysm_A 45 KRAGWQCPECK--------VCQNCKQSGE 65 (111)
T ss_dssp TSTTCCCTTTC--------CCTTTCCCSC
T ss_pred cccCccCCcCC--------cccccCccCC
Confidence 35899999985 5777776643
No 49
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=66.13 E-value=3.4 Score=24.10 Aligned_cols=25 Identities=32% Similarity=0.646 Sum_probs=23.0
Q ss_pred CCcccCCCCCCCeecCCCcCccccCCC
Q 033000 50 GDWYCTAMNCGAHNYASRPNCYRCGAA 76 (129)
Q Consensus 50 gdW~C~~~~C~~~N~~~~~~C~~C~~~ 76 (129)
..++|- .|+..|-.+++.|.+||..
T Consensus 18 ~k~ICr--kC~ARnp~~A~~CRKCg~~ 42 (56)
T 2ayj_A 18 LKKVCR--KCGALNPIRATKCRRCHST 42 (56)
T ss_dssp CCEEET--TTCCEECTTCSSCTTTCCC
T ss_pred chhhhc--cccCcCCcccccccCCCCC
Confidence 579999 9999999999999999955
No 50
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=65.18 E-value=6.4 Score=22.65 Aligned_cols=16 Identities=31% Similarity=0.908 Sum_probs=12.2
Q ss_pred CccccCCCcccCCCCCCC
Q 033000 44 RTEVLAGDWYCTAMNCGA 61 (129)
Q Consensus 44 ~~~~~~gdW~C~~~~C~~ 61 (129)
.+.-.+.||.|+ .|+.
T Consensus 29 ~fe~lP~dw~CP--~Cg~ 44 (54)
T 4rxn_A 29 DFKDIPDDWVCP--LCGV 44 (54)
T ss_dssp CGGGSCTTCBCT--TTCC
T ss_pred ChhHCCCCCcCc--CCCC
Confidence 466678899999 6665
No 51
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=63.18 E-value=3.8 Score=28.87 Aligned_cols=28 Identities=29% Similarity=0.599 Sum_probs=21.6
Q ss_pred CCCcccCCCCCCCeecC-CCcCccccCCCCC
Q 033000 49 AGDWYCTAMNCGAHNYA-SRPNCYRCGAAKT 78 (129)
Q Consensus 49 ~gdW~C~~~~C~~~N~~-~~~~C~~C~~~~~ 78 (129)
...|.|. .||++-.. ....|+.|++++.
T Consensus 136 ~~~~~C~--~CG~i~~~~~p~~CP~Cg~~~~ 164 (170)
T 3pwf_A 136 KKVYICP--ICGYTAVDEAPEYCPVCGAPKE 164 (170)
T ss_dssp SCEEECT--TTCCEEESCCCSBCTTTCCBGG
T ss_pred CCeeEeC--CCCCeeCCCCCCCCCCCCCCHH
Confidence 3469999 99998654 3458999998864
No 52
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=63.01 E-value=4.5 Score=24.85 Aligned_cols=18 Identities=33% Similarity=0.931 Sum_probs=12.9
Q ss_pred CCCeEcCccCccccccccccccCCCCC
Q 033000 5 GGDWMCAACQHQNFKKREACQRCGYPK 31 (129)
Q Consensus 5 ~gdW~C~~C~~~Nf~~r~~C~~C~~pr 31 (129)
.++|.|..| .|..|+...
T Consensus 19 ~~~W~C~~C---------~C~vC~~~~ 36 (77)
T 3shb_A 19 DVNRLCRVC---------ACHLCGGRQ 36 (77)
T ss_dssp CTTSCCTTT---------SBTTTCCCS
T ss_pred CCCCCCCCC---------cCCccCCCC
Confidence 478999988 266676654
No 53
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=62.62 E-value=9.2 Score=22.82 Aligned_cols=10 Identities=40% Similarity=1.597 Sum_probs=8.4
Q ss_pred CC-CcccCCCCCC
Q 033000 49 AG-DWYCTAMNCG 60 (129)
Q Consensus 49 ~g-dW~C~~~~C~ 60 (129)
.| +|.|+ .|.
T Consensus 57 ~g~~W~C~--~C~ 67 (70)
T 3asl_A 57 SEDEWYCP--ECR 67 (70)
T ss_dssp SSSCCCCT--TTS
T ss_pred CCCCcCCc--Ccc
Confidence 57 99999 885
No 54
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=61.75 E-value=5.7 Score=22.64 Aligned_cols=25 Identities=32% Similarity=0.774 Sum_probs=18.3
Q ss_pred CCcccCCCCCCCeecCCCcCccccCCC
Q 033000 50 GDWYCTAMNCGAHNYASRPNCYRCGAA 76 (129)
Q Consensus 50 gdW~C~~~~C~~~N~~~~~~C~~C~~~ 76 (129)
...+|+ .|+..|-.....|.+||..
T Consensus 13 ~k~iCp--kC~a~~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 13 KKYVCL--RCGATNPWGAKKCRKCGYK 37 (51)
T ss_dssp SEEECT--TTCCEECTTCSSCSSSSSC
T ss_pred CCccCC--CCCCcCCCCceecCCCCCc
Confidence 456777 7777777777777777765
No 55
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=58.52 E-value=5.7 Score=22.10 Aligned_cols=11 Identities=55% Similarity=1.425 Sum_probs=6.6
Q ss_pred cCceeecCCCCCc
Q 033000 100 SGDWICNRMGCGV 112 (129)
Q Consensus 100 ~gdW~C~~~~C~~ 112 (129)
+.||.|+ .|+.
T Consensus 28 P~dw~CP--~Cg~ 38 (46)
T 6rxn_A 28 PDDWCCP--VCGV 38 (46)
T ss_dssp CTTCBCT--TTCC
T ss_pred CCCCcCc--CCCC
Confidence 4566676 4654
No 56
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.73 E-value=14 Score=22.55 Aligned_cols=11 Identities=36% Similarity=1.180 Sum_probs=8.7
Q ss_pred cCC-CcccCCCCCC
Q 033000 48 LAG-DWYCTAMNCG 60 (129)
Q Consensus 48 ~~g-dW~C~~~~C~ 60 (129)
-.| +|.|+ .|.
T Consensus 64 P~g~~W~C~--~C~ 75 (77)
T 2e6s_A 64 PEEEYWYCP--SCK 75 (77)
T ss_dssp CCSSCCCCT--TTC
T ss_pred CCCCCcCCc--Ccc
Confidence 357 99999 885
No 57
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=53.47 E-value=11 Score=21.64 Aligned_cols=33 Identities=27% Similarity=0.521 Sum_probs=20.0
Q ss_pred ecCCCcCccccCCCCCCcccccccccCCCCCCCCCCccCceeecCCCCCce
Q 033000 63 NYASRPNCYRCGAAKTDYACANMMAYGTDGSVPPGWKSGDWICNRMGCGVH 113 (129)
Q Consensus 63 N~~~~~~C~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~gdW~C~~~~C~~~ 113 (129)
++.....|+.|+...... ....|++.|. .|+.+
T Consensus 7 ~ll~~~~Cp~C~~~~lv~----------------D~~~ge~vC~--~CGlV 39 (58)
T 1dl6_A 7 DALPRVTCPNHPDAILVE----------------DYRAGDMICP--ECGLV 39 (58)
T ss_dssp CCCSCCSBTTBSSSCCEE----------------CSSSCCEECT--TTCCE
T ss_pred hccccccCcCCCCCceeE----------------eCCCCeEEeC--CCCCE
Confidence 455556788887543221 1235778888 58776
No 58
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=52.40 E-value=6 Score=28.18 Aligned_cols=27 Identities=30% Similarity=0.754 Sum_probs=21.1
Q ss_pred CcccCCCCCCCeecC--CCcCccccCCCCCC
Q 033000 51 DWYCTAMNCGAHNYA--SRPNCYRCGAAKTD 79 (129)
Q Consensus 51 dW~C~~~~C~~~N~~--~~~~C~~C~~~~~~ 79 (129)
-|.|. .||++-.. ....|+.|++++..
T Consensus 155 ~~~C~--~CG~~~~g~~~p~~CP~C~~~k~~ 183 (191)
T 1lko_A 155 KWRCR--NCGYVHEGTGAPELCPACAHPKAH 183 (191)
T ss_dssp EEEET--TTCCEEEEEECCSBCTTTCCBGGG
T ss_pred eEEEC--CCCCEeeCCCCCCCCCCCcCCHHH
Confidence 69999 99999543 34589999998643
No 59
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=51.00 E-value=5.5 Score=25.99 Aligned_cols=20 Identities=30% Similarity=0.966 Sum_probs=14.6
Q ss_pred CCCCeEcCccCccccccccccccCCCCC
Q 033000 4 PGGDWMCAACQHQNFKKREACQRCGYPK 31 (129)
Q Consensus 4 ~~gdW~C~~C~~~Nf~~r~~C~~C~~pr 31 (129)
+.++|.|+.|. .|..|+...
T Consensus 49 ~~~~W~C~~C~--------~C~~C~~~~ 68 (114)
T 2kwj_A 49 KTYKWQCIECK--------SCILCGTSE 68 (114)
T ss_dssp HHTTCCCGGGC--------CCTTTTCCT
T ss_pred CCCccCccccC--------ccCcccccC
Confidence 35799999883 577777754
No 60
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=49.65 E-value=8.6 Score=27.72 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=20.4
Q ss_pred CCcccCCCCCCCeecCCC-cCccccCCCCC
Q 033000 50 GDWYCTAMNCGAHNYASR-PNCYRCGAAKT 78 (129)
Q Consensus 50 gdW~C~~~~C~~~N~~~~-~~C~~C~~~~~ 78 (129)
.-|.|. .||++-.... ..|+.|++++.
T Consensus 170 ~~~~C~--~CG~i~~g~~p~~CP~C~~~k~ 197 (202)
T 1yuz_A 170 KFHLCP--ICGYIHKGEDFEKCPICFRPKD 197 (202)
T ss_dssp CEEECS--SSCCEEESSCCSBCTTTCCBGG
T ss_pred cEEEEC--CCCCEEcCcCCCCCCCCCCChH
Confidence 369999 9999955432 47888888764
No 61
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=41.71 E-value=9.1 Score=21.01 Aligned_cols=11 Identities=55% Similarity=1.510 Sum_probs=9.1
Q ss_pred CCCeEcCccCc
Q 033000 5 GGDWMCAACQH 15 (129)
Q Consensus 5 ~gdW~C~~C~~ 15 (129)
.|+|.|+.|..
T Consensus 39 ~g~W~C~~C~~ 49 (51)
T 1f62_A 39 DGEWQCPACQP 49 (51)
T ss_dssp SSCCSCTTTSC
T ss_pred CCcEECcCccc
Confidence 48999999954
No 62
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=38.58 E-value=15 Score=23.22 Aligned_cols=13 Identities=38% Similarity=1.265 Sum_probs=10.2
Q ss_pred CCCCeEcCccCcc
Q 033000 4 PGGDWMCAACQHQ 16 (129)
Q Consensus 4 ~~gdW~C~~C~~~ 16 (129)
..|+|.|+.|...
T Consensus 60 P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 60 PGEEWSCSLCHVL 72 (88)
T ss_dssp CSSSCCCCSCCCC
T ss_pred cCCCcCCccccCC
Confidence 3589999999754
No 63
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=35.97 E-value=16 Score=26.27 Aligned_cols=27 Identities=22% Similarity=0.500 Sum_probs=20.5
Q ss_pred CceeecCCCCCceeccCC-ccccCCCCCCC
Q 033000 101 GDWICNRMGCGVHNYASR-MVCYKCKTPRE 129 (129)
Q Consensus 101 gdW~C~~~~C~~~N~a~r-~~C~~C~~pk~ 129 (129)
..|.|. .|++.-.... ..|..|++++.
T Consensus 170 ~~~~C~--~CG~i~~g~~p~~CP~C~~~k~ 197 (202)
T 1yuz_A 170 KFHLCP--ICGYIHKGEDFEKCPICFRPKD 197 (202)
T ss_dssp CEEECS--SSCCEEESSCCSBCTTTCCBGG
T ss_pred cEEEEC--CCCCEEcCcCCCCCCCCCCChH
Confidence 469999 6999855433 48999999863
No 64
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=33.20 E-value=27 Score=22.69 Aligned_cols=29 Identities=17% Similarity=0.384 Sum_probs=20.7
Q ss_pred CCCCeEcCccCccccc--ccc-ccccCCCCCC
Q 033000 4 PGGDWMCAACQHQNFK--KRE-ACQRCGYPKY 32 (129)
Q Consensus 4 ~~gdW~C~~C~~~Nf~--~r~-~C~~C~~prp 32 (129)
.|+.|.|..|++.-.. ... .|..|+.+..
T Consensus 70 ~p~~~~C~~CG~~~e~~~~~~~~CP~Cgs~~~ 101 (119)
T 2kdx_A 70 EKVELECKDCSHVFKPNALDYGVCEKCHSKNV 101 (119)
T ss_dssp ECCEEECSSSSCEECSCCSTTCCCSSSSSCCC
T ss_pred ccceEEcCCCCCEEeCCCCCCCcCccccCCCc
Confidence 3788999999876432 334 7888888854
No 65
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=32.31 E-value=27 Score=25.83 Aligned_cols=11 Identities=36% Similarity=1.383 Sum_probs=8.6
Q ss_pred cCC-CcccCCCCCC
Q 033000 48 LAG-DWYCTAMNCG 60 (129)
Q Consensus 48 ~~g-dW~C~~~~C~ 60 (129)
..| +|.|+ .|.
T Consensus 212 P~G~~W~Cp--~C~ 223 (226)
T 3ask_A 212 PSEDEWYCP--ECR 223 (226)
T ss_dssp CSSSCCCCG--GGC
T ss_pred CCCCCCCCc--CCc
Confidence 357 99999 884
No 66
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=32.18 E-value=17 Score=21.43 Aligned_cols=11 Identities=27% Similarity=0.773 Sum_probs=9.1
Q ss_pred CCCeEcCccCc
Q 033000 5 GGDWMCAACQH 15 (129)
Q Consensus 5 ~gdW~C~~C~~ 15 (129)
.|+|.|+.|..
T Consensus 48 ~g~W~C~~C~~ 58 (66)
T 2lri_C 48 GTGLRCRSCSG 58 (66)
T ss_dssp SSSCCCTTTTT
T ss_pred CCCEECccccC
Confidence 58999999954
No 67
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=32.02 E-value=16 Score=20.91 Aligned_cols=14 Identities=21% Similarity=0.807 Sum_probs=9.6
Q ss_pred CCcccCCCCCCCeecC
Q 033000 50 GDWYCTAMNCGAHNYA 65 (129)
Q Consensus 50 gdW~C~~~~C~~~N~~ 65 (129)
+.|.|. .|++.-|.
T Consensus 35 dr~~C~--kCgyt~~~ 48 (55)
T 2k4x_A 35 DRYSCG--RCGYTEFK 48 (55)
T ss_dssp SEEECT--TTCCCEEC
T ss_pred CEEECC--CCCCEEEe
Confidence 467787 78777553
No 68
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=31.92 E-value=19 Score=20.62 Aligned_cols=12 Identities=33% Similarity=1.329 Sum_probs=9.3
Q ss_pred CCCeEcCccCcc
Q 033000 5 GGDWMCAACQHQ 16 (129)
Q Consensus 5 ~gdW~C~~C~~~ 16 (129)
.|+|.|+.|...
T Consensus 45 ~g~W~C~~C~~~ 56 (61)
T 1mm2_A 45 NGEWLCPRCTCP 56 (61)
T ss_dssp SSCCCCTTTTTT
T ss_pred CCccCChhhcCc
Confidence 489999998643
No 69
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=31.85 E-value=18 Score=22.44 Aligned_cols=50 Identities=20% Similarity=0.461 Sum_probs=28.3
Q ss_pred CCCeEcCccCcc---ccccccccccCCCCCCCCCCCcccccCCccccCCCcccCCCCCCCe
Q 033000 5 GGDWMCAACQHQ---NFKKREACQRCGYPKYGGPDVSTYLCNRTEVLAGDWYCTAMNCGAH 62 (129)
Q Consensus 5 ~gdW~C~~C~~~---Nf~~r~~C~~C~~prp~~~~~~~~~~~~~~~~~gdW~C~~~~C~~~ 62 (129)
..+..|..|+.. +...-..|-.|...-... =.+-..+.+|+|.|+ .|...
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~------Cl~p~~vP~g~W~C~--~C~~~ 75 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQE------CYGVPYIPEGQWLCR--HCLQS 75 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHH------HHTCSSCCSSCCCCH--HHHHH
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcc------cCCCCccCCCceECc--cccCc
Confidence 356778888654 444566777776643210 000012345899999 77554
No 70
>2lbz_A Thuricin17, thurincin H; helical loops, crosslinked, antimicrobial protein; HET: DSG 2TL DSN; NMR {Bacillus thuringiensis}
Probab=31.74 E-value=11 Score=18.65 Aligned_cols=8 Identities=50% Similarity=1.547 Sum_probs=6.1
Q ss_pred CeEcCccC
Q 033000 7 DWMCAACQ 14 (129)
Q Consensus 7 dW~C~~C~ 14 (129)
||+|-+|.
T Consensus 1 dwtcwscl 8 (31)
T 2lbz_A 1 DWTCWSCL 8 (31)
T ss_dssp CCCTTGGG
T ss_pred CccHHHHH
Confidence 68888774
No 71
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=31.45 E-value=62 Score=18.83 Aligned_cols=22 Identities=27% Similarity=0.815 Sum_probs=17.0
Q ss_pred ccCCCCCCCeecCCCcCccccCCCCC
Q 033000 53 YCTAMNCGAHNYASRPNCYRCGAAKT 78 (129)
Q Consensus 53 ~C~~~~C~~~N~~~~~~C~~C~~~~~ 78 (129)
.|+ .|+..-. ...|..||.+-.
T Consensus 8 ~C~--~CgvYTL--k~~CP~CG~~T~ 29 (60)
T 2apo_B 8 KCP--KCGLYTL--KEICPKCGEKTV 29 (60)
T ss_dssp ECT--TTCCEES--SSBCSSSCSBCB
T ss_pred eCC--CCCCEec--cccCcCCCCcCC
Confidence 488 8877766 778999997743
No 72
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.39 E-value=23 Score=19.84 Aligned_cols=47 Identities=21% Similarity=0.542 Sum_probs=26.7
Q ss_pred CCCeEcCccCccccccccccccCCCCCCCC-CCCcccccCCccccCCCcccCCCCCC
Q 033000 5 GGDWMCAACQHQNFKKREACQRCGYPKYGG-PDVSTYLCNRTEVLAGDWYCTAMNCG 60 (129)
Q Consensus 5 ~gdW~C~~C~~~Nf~~r~~C~~C~~prp~~-~~~~~~~~~~~~~~~gdW~C~~~~C~ 60 (129)
..++.|..|...+ .-..|-.|...-... ..+ .-..+..|+|.|+ .|.
T Consensus 7 ~~~~~C~vC~~~g--~ll~Cd~C~~~~H~~Cl~p-----pl~~~p~g~W~C~--~C~ 54 (56)
T 2yql_A 7 GHEDFCSVCRKSG--QLLMCDTCSRVYHLDCLDP-----PLKTIPKGMWICP--RCQ 54 (56)
T ss_dssp SSCCSCSSSCCSS--CCEECSSSSCEECSSSSSS-----CCCSCCCSSCCCH--HHH
T ss_pred CCCCCCccCCCCC--eEEEcCCCCcceECccCCC-----CcCCCCCCceECh--hhh
Confidence 3578888887653 556777776543221 000 0112335899998 663
No 73
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=29.83 E-value=30 Score=23.30 Aligned_cols=13 Identities=15% Similarity=0.455 Sum_probs=10.6
Q ss_pred CCCeEcCccCccc
Q 033000 5 GGDWMCAACQHQN 17 (129)
Q Consensus 5 ~gdW~C~~C~~~N 17 (129)
|..|.|..|++.-
T Consensus 68 p~~~~C~~CG~~~ 80 (139)
T 3a43_A 68 EAVFKCRNCNYEW 80 (139)
T ss_dssp CCEEEETTTCCEE
T ss_pred CCcEECCCCCCEE
Confidence 6789999997763
No 74
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=29.33 E-value=39 Score=19.86 Aligned_cols=50 Identities=16% Similarity=0.470 Sum_probs=25.6
Q ss_pred CCeEcCccCccccc-cccccccCCCCCCCC-CCCcccccCCccccCCCcccCCCCCCCe
Q 033000 6 GDWMCAACQHQNFK-KREACQRCGYPKYGG-PDVSTYLCNRTEVLAGDWYCTAMNCGAH 62 (129)
Q Consensus 6 gdW~C~~C~~~Nf~-~r~~C~~C~~prp~~-~~~~~~~~~~~~~~~gdW~C~~~~C~~~ 62 (129)
.++.|..|+..... .-..|-.|..--... ..+ .......++|.|+ .|...
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~-----~~~~~~~~~w~C~--~C~~~ 68 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGI-----MAAPPEEMQWFCP--KCANK 68 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTC-----SSCCCSSSCCCCT--TTHHH
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCC-----CccCCCCCCEECh--hccCc
Confidence 35678777665443 346666665421100 000 0112224799999 88543
No 75
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=28.96 E-value=9.8 Score=22.28 Aligned_cols=13 Identities=31% Similarity=1.142 Sum_probs=9.8
Q ss_pred CCCeEcCccCccc
Q 033000 5 GGDWMCAACQHQN 17 (129)
Q Consensus 5 ~gdW~C~~C~~~N 17 (129)
.|+|.|+.|....
T Consensus 44 ~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 44 SGTWRCSSCLQAT 56 (66)
T ss_dssp SSCCCCHHHHHTC
T ss_pred CCCeECccccCcc
Confidence 4899999886543
No 76
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.30 E-value=23 Score=19.77 Aligned_cols=32 Identities=28% Similarity=0.741 Sum_probs=20.0
Q ss_pred cccccccCCCCCCCCCCCcccccCCccccCCCcccCCCCCCCeecC
Q 033000 20 KREACQRCGYPKYGGPDVSTYLCNRTEVLAGDWYCTAMNCGAHNYA 65 (129)
Q Consensus 20 ~r~~C~~C~~prp~~~~~~~~~~~~~~~~~gdW~C~~~~C~~~N~~ 65 (129)
.+..|.+|+++.... ...+.|.|+ .|++.-|.
T Consensus 18 ~~k~CP~CG~~~fm~------------~~~~R~~C~--kCG~t~~~ 49 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMA------------DHGDRWACG--KCGYTEWK 49 (50)
T ss_dssp SSEECSSSCSSCEEE------------ECSSEEECS--SSCCEEEC
T ss_pred ecccCCCCCCceEEe------------cCCCeEECC--CCCCEEEC
Confidence 456777777653221 112578999 99987663
No 77
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=27.94 E-value=39 Score=18.30 Aligned_cols=11 Identities=36% Similarity=1.135 Sum_probs=6.2
Q ss_pred cCceeecCCCCCc
Q 033000 100 SGDWICNRMGCGV 112 (129)
Q Consensus 100 ~gdW~C~~~~C~~ 112 (129)
.+++.|. .|+.
T Consensus 22 ~gelvC~--~CG~ 32 (50)
T 1pft_A 22 RGEIVCA--KCGY 32 (50)
T ss_dssp TTEEEES--SSCC
T ss_pred CCeEECc--ccCC
Confidence 3556666 4655
No 78
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=27.78 E-value=15 Score=22.04 Aligned_cols=49 Identities=20% Similarity=0.472 Sum_probs=24.4
Q ss_pred CCCeEcCccCcc---ccccccccccCCCCCCCCCCCcccccCCccccCCCcccCCCCCCC
Q 033000 5 GGDWMCAACQHQ---NFKKREACQRCGYPKYGGPDVSTYLCNRTEVLAGDWYCTAMNCGA 61 (129)
Q Consensus 5 ~gdW~C~~C~~~---Nf~~r~~C~~C~~prp~~~~~~~~~~~~~~~~~gdW~C~~~~C~~ 61 (129)
..+..|..|... +...-..|-.|...-... =.+-..+.+|+|.|+ .|..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~------Cl~~~~vP~g~W~C~--~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQE------CYGVPYIPEGQWLCR--HCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHH------HHTCSSCCSSCCCCH--HHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccc------cCCCCcCCCCCcCCc--cCcC
Confidence 345666666543 334455566555421100 000112446899999 7743
No 79
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=26.61 E-value=55 Score=21.27 Aligned_cols=30 Identities=20% Similarity=0.532 Sum_probs=23.0
Q ss_pred ccCCCcccCCCCCCCeec----CCCcCccccCCCCCC
Q 033000 47 VLAGDWYCTAMNCGAHNY----ASRPNCYRCGAAKTD 79 (129)
Q Consensus 47 ~~~gdW~C~~~~C~~~N~----~~~~~C~~C~~~~~~ 79 (129)
+.--+-.|. .||+. | .....|++|+..+-.
T Consensus 63 L~v~p~~C~--~CG~~-F~~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 63 LLIKPAQCR--KCGFV-FKAEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp EEECCCBBT--TTCCB-CCCCSSCCSSCSSSCCCCBC
T ss_pred EEEECcChh--hCcCe-ecccCCCCCCCcCCCCCccC
Confidence 334578899 99999 7 456889999877654
No 80
>4b2v_A S64; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=24.25 E-value=22 Score=17.67 Aligned_cols=11 Identities=45% Similarity=1.229 Sum_probs=8.7
Q ss_pred CCCCCeEcCcc
Q 033000 3 LPGGDWMCAAC 13 (129)
Q Consensus 3 ~~~gdW~C~~C 13 (129)
.|-|||-|..|
T Consensus 14 ekmgdwccgrc 24 (32)
T 4b2v_A 14 EKMGDWCCGRC 24 (32)
T ss_dssp TTTCCCCSSEE
T ss_pred HHhcchhhhHH
Confidence 35689999887
No 81
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=24.22 E-value=21 Score=30.78 Aligned_cols=29 Identities=31% Similarity=0.464 Sum_probs=21.0
Q ss_pred CCCCCCCeEcCccCccccccccccccCCC
Q 033000 1 MSLPGGDWMCAACQHQNFKKREACQRCGY 29 (129)
Q Consensus 1 ~~~~~gdW~C~~C~~~Nf~~r~~C~~C~~ 29 (129)
||..--.|.|.+|+.++...-.+|..|+.
T Consensus 5 ~~~~~~~~~c~yc~~~~~~~~~~c~~~~~ 33 (802)
T 2xzl_A 5 MSPSASDNSCAYCGIDSAKCVIKCNSCKK 33 (802)
T ss_dssp -------CCCTTTCCCCTTTEEEETTTCC
T ss_pred ccccCChhhCcccCCCCCceEEEeCCCCc
Confidence 66666789999999999999999999887
No 82
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=24.05 E-value=25 Score=20.13 Aligned_cols=49 Identities=20% Similarity=0.453 Sum_probs=25.1
Q ss_pred CCCeEcCccCccccccccccccCCCCCCCC-CCCcccccCCccccCCCcccCCCCCCCe
Q 033000 5 GGDWMCAACQHQNFKKREACQRCGYPKYGG-PDVSTYLCNRTEVLAGDWYCTAMNCGAH 62 (129)
Q Consensus 5 ~gdW~C~~C~~~Nf~~r~~C~~C~~prp~~-~~~~~~~~~~~~~~~gdW~C~~~~C~~~ 62 (129)
..++.|..|... ..-..|-.|...-... ..+ ....+..|+|.|+ .|...
T Consensus 9 ~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p-----~l~~~p~g~W~C~--~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG--GEIILCDTCPRAYHMVCLDP-----DMEKAPEGKWSCP--HCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC--SSEEECSSSSCEEEHHHHCT-----TCCSCCCSSCCCT--TGGGG
T ss_pred CCCCCCccCCCC--CcEEECCCCChhhhhhccCC-----CCCCCCCCceECc--ccccc
Confidence 346677777653 3445566555421100 000 0122345899999 88654
No 83
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=23.55 E-value=64 Score=22.26 Aligned_cols=54 Identities=22% Similarity=0.420 Sum_probs=29.4
Q ss_pred CCCeEcCccCccccccccccccCCCCCCCCCCCcccccCCccccCCCcccCCCCCCCeecCC
Q 033000 5 GGDWMCAACQHQNFKKREACQRCGYPKYGGPDVSTYLCNRTEVLAGDWYCTAMNCGAHNYAS 66 (129)
Q Consensus 5 ~gdW~C~~C~~~Nf~~r~~C~~C~~prp~~~~~~~~~~~~~~~~~gdW~C~~~~C~~~N~~~ 66 (129)
+.|..|..|+.. ..-..|-.|...-...=. . ..-.....|+|.|+ .|.....+.
T Consensus 2 ~~~~~C~~C~~~--g~ll~Cd~C~~~~H~~C~--~--p~l~~~p~~~W~C~--~C~~~~~~~ 55 (184)
T 3o36_A 2 PNEDWCAVCQNG--GELLCCEKCPKVFHLSCH--V--PTLTNFPSGEWICT--FCRDLSKPE 55 (184)
T ss_dssp CSCSSCTTTCCC--SSCEECSSSSCEECTTTS--S--SCCSSCCSSCCCCT--TTSCSSSCS
T ss_pred CCCCccccCCCC--CeeeecCCCCcccCcccc--C--CCCCCCCCCCEECc--cccCccccc
Confidence 456678888644 234566666553221100 0 00122346899999 998776543
No 84
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=22.47 E-value=37 Score=22.96 Aligned_cols=24 Identities=25% Similarity=0.571 Sum_probs=21.3
Q ss_pred ccCCCCCCCeecCCCcCccccCCCCC
Q 033000 53 YCTAMNCGAHNYASRPNCYRCGAAKT 78 (129)
Q Consensus 53 ~C~~~~C~~~N~~~~~~C~~C~~~~~ 78 (129)
.|. .|+.+-|..+..|..|+....
T Consensus 49 rC~--~CG~~~~PPr~~Cp~C~s~~~ 72 (145)
T 3irb_A 49 KCS--KCGRIFVPARSYCEHCFVKIE 72 (145)
T ss_dssp ECT--TTCCEEESCCSEETTTTEECC
T ss_pred EeC--CCCcEEcCchhhCcCCCCCce
Confidence 499 999999999999999987654
No 85
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=22.42 E-value=31 Score=19.93 Aligned_cols=14 Identities=29% Similarity=0.660 Sum_probs=11.7
Q ss_pred CCeEcCccCccccc
Q 033000 6 GDWMCAACQHQNFK 19 (129)
Q Consensus 6 gdW~C~~C~~~Nf~ 19 (129)
..|.|+-|...|..
T Consensus 32 ~~W~C~~C~~~N~~ 45 (59)
T 2yrc_A 32 KLWACNFCYQRNQF 45 (59)
T ss_dssp TEEECSSSCCEEEC
T ss_pred CEEEcccCCCcCCC
Confidence 36999999998864
No 86
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=20.73 E-value=18 Score=20.54 Aligned_cols=13 Identities=46% Similarity=1.165 Sum_probs=10.2
Q ss_pred CCCeEcCccCccc
Q 033000 5 GGDWMCAACQHQN 17 (129)
Q Consensus 5 ~gdW~C~~C~~~N 17 (129)
.|+|.|+.|....
T Consensus 41 ~g~W~C~~C~~~~ 53 (60)
T 2puy_A 41 KGMWICPRCQDQM 53 (60)
T ss_dssp CSCCCCHHHHHHH
T ss_pred CCceEChhccChh
Confidence 4899999996544
No 87
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=20.43 E-value=83 Score=24.07 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=24.1
Q ss_pred ccccccccccCCCCCCCCCCCcccccCCccccCCCcccCCCCCCCeec
Q 033000 17 NFKKREACQRCGYPKYGGPDVSTYLCNRTEVLAGDWYCTAMNCGAHNY 64 (129)
Q Consensus 17 Nf~~r~~C~~C~~prp~~~~~~~~~~~~~~~~~gdW~C~~~~C~~~N~ 64 (129)
|+.....|..|+...|.- + .....|+.+|. .||.+--
T Consensus 17 ~~~~~~~Cp~Cg~~~~~i--v-------~D~~~G~~vC~--~CG~Vl~ 53 (345)
T 3k7a_M 17 NLNIVLTCPECKVYPPKI--V-------ERFSEGDVVCA--LCGLVLS 53 (345)
T ss_dssp CCCCCCCCSTTCCSCCCC--C-------CCSSSCSCCCS--SSCCCCC
T ss_pred cccCCCcCcCCCCCCCce--E-------EECCCCCEecC--CCCeEcc
Confidence 445566788888763321 1 23456899999 8988754
No 88
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=20.21 E-value=44 Score=22.68 Aligned_cols=23 Identities=26% Similarity=0.598 Sum_probs=20.7
Q ss_pred ccCCCCCCCeecCCCcCccccCCCC
Q 033000 53 YCTAMNCGAHNYASRPNCYRCGAAK 77 (129)
Q Consensus 53 ~C~~~~C~~~N~~~~~~C~~C~~~~ 77 (129)
.|. .|+.+-|..+..|..|+...
T Consensus 49 rC~--~CG~~~fPPr~~Cp~C~s~~ 71 (145)
T 2gnr_A 49 KCS--KCGRIFVPARSYCEHCFVKI 71 (145)
T ss_dssp ECT--TTCCEEESCCSEETTTTEEC
T ss_pred EEC--CCCcEEeCCCCCCCCCCCCc
Confidence 588 99999999999999998764
Done!