Query 033001
Match_columns 129
No_of_seqs 185 out of 805
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 13:54:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033001.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033001hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dfx_A Trans-acting T-cell-spe 99.9 6E-24 2E-28 140.6 4.5 60 22-82 3-62 (63)
2 4gat_A Nitrogen regulatory pro 99.9 3.4E-23 1.2E-27 138.0 3.0 60 22-82 5-64 (66)
3 2vut_I AREA, nitrogen regulato 99.8 5.7E-21 2E-25 117.8 3.5 43 26-69 1-43 (43)
4 4hc9_A Trans-acting T-cell-spe 99.8 2E-20 6.8E-25 135.8 4.2 62 20-82 53-114 (115)
5 2kae_A GATA-type transcription 99.8 1.4E-20 5E-25 126.9 2.9 54 23-76 5-58 (71)
6 1gnf_A Transcription factor GA 99.8 6.7E-20 2.3E-24 114.5 4.5 43 25-68 3-45 (46)
7 4hc9_A Trans-acting T-cell-spe 99.6 1.6E-15 5.6E-20 109.9 4.6 45 24-69 3-47 (115)
8 2crr_A Stromal membrane-associ 83.9 0.9 3.1E-05 33.3 3.5 45 25-71 28-76 (141)
9 2owa_A Arfgap-like finger doma 83.0 0.73 2.5E-05 33.7 2.6 45 25-71 35-83 (138)
10 2iqj_A Stromal membrane-associ 82.8 0.83 2.8E-05 33.2 2.8 45 25-71 26-74 (134)
11 3dwd_A ADP-ribosylation factor 82.2 1 3.6E-05 33.5 3.2 46 24-71 36-85 (147)
12 3cw2_K Translation initiation 81.7 0.63 2.2E-05 34.2 1.9 29 27-56 104-132 (139)
13 2crw_A ARF GAP 3, ADP-ribosyla 79.5 1.6 5.6E-05 32.3 3.5 46 24-71 27-76 (149)
14 2d74_B Translation initiation 78.0 0.69 2.3E-05 34.4 1.0 29 27-56 105-133 (148)
15 1k81_A EIF-2-beta, probable tr 75.9 0.19 6.4E-06 28.9 -2.0 28 28-56 2-29 (36)
16 1nee_A EIF-2-beta, probable tr 74.4 0.67 2.3E-05 34.0 0.1 29 27-56 103-131 (138)
17 3sub_A ADP-ribosylation factor 74.2 2.1 7.2E-05 32.4 2.8 45 25-71 21-69 (163)
18 2p57_A GTPase-activating prote 73.7 1.6 5.6E-05 32.2 2.1 46 24-71 35-84 (144)
19 1dl6_A Transcription factor II 71.4 1.6 5.5E-05 27.2 1.4 30 26-58 11-40 (58)
20 2b0o_E UPLC1; arfgap, structur 68.8 3.2 0.00011 32.1 2.9 45 25-71 41-89 (301)
21 3k7a_M Transcription initiatio 67.7 1.7 5.8E-05 35.3 1.1 33 25-58 20-52 (345)
22 2olm_A Nucleoporin-like protei 67.5 2.9 9.8E-05 30.5 2.2 45 25-71 24-71 (140)
23 3jue_A Arfgap with coiled-coil 64.2 5.2 0.00018 32.3 3.4 46 24-71 43-92 (368)
24 3o47_A ADP-ribosylation factor 57.3 6 0.0002 31.3 2.5 45 25-71 36-84 (329)
25 2g2k_A EIF-5, eukaryotic trans 56.2 1.3 4.6E-05 33.6 -1.4 30 27-56 97-127 (170)
26 3bvo_A CO-chaperone protein HS 55.2 6.1 0.00021 30.1 2.2 52 25-81 9-69 (207)
27 1pft_A TFIIB, PFTFIIBN; N-term 54.6 2 6.8E-05 25.4 -0.5 30 26-58 5-34 (50)
28 2e9h_A EIF-5, eukaryotic trans 51.1 2 6.9E-05 32.2 -1.1 30 27-56 104-134 (157)
29 3cng_A Nudix hydrolase; struct 50.3 3.7 0.00012 29.5 0.2 32 25-56 2-33 (189)
30 4bbr_M Transcription initiatio 43.1 3 0.0001 34.0 -1.3 30 26-56 21-50 (345)
31 1dcq_A PYK2-associated protein 41.2 17 0.00057 27.5 2.7 46 25-72 16-65 (278)
32 3lju_X ARF-GAP with dual PH do 40.5 8.9 0.0003 31.5 1.1 45 25-71 33-80 (386)
33 2yrk_A Zinc finger homeobox pr 40.5 3.7 0.00013 25.9 -0.9 20 42-61 7-26 (55)
34 3k1f_M Transcription initiatio 35.3 5.6 0.00019 30.9 -0.9 32 24-56 19-50 (197)
35 3h0g_L DNA-directed RNA polyme 33.2 16 0.00056 23.3 1.2 32 24-60 19-50 (63)
36 1lko_A Rubrerythrin all-iron(I 30.7 5.4 0.00018 29.8 -1.6 26 25-56 154-179 (191)
37 3lvq_E ARF-GAP with SH3 domain 29.7 41 0.0014 27.5 3.5 45 25-71 22-70 (497)
38 3pwf_A Rubrerythrin; non heme 29.5 9.6 0.00033 28.2 -0.4 26 24-56 136-161 (170)
39 1pqv_S STP-alpha, transcriptio 28.0 9.1 0.00031 30.9 -0.8 35 26-60 268-308 (309)
40 1twf_L ABC10-alpha, DNA-direct 27.4 12 0.00042 24.2 -0.1 29 23-56 25-53 (70)
41 2l1q_A Liver-expressed antimic 27.4 17 0.00057 21.5 0.5 7 37-43 2-8 (40)
42 1nui_A DNA primase/helicase; z 26.9 14 0.00049 28.0 0.2 30 24-56 12-41 (255)
43 2kdx_A HYPA, hydrogenase/ureas 24.6 14 0.0005 25.3 -0.2 29 23-57 70-99 (119)
44 1tzs_X 23-MER peptide from PEL 23.7 33 0.0011 18.4 1.2 14 113-126 7-20 (26)
45 3lpe_B DNA-directed RNA polyme 23.7 16 0.00053 23.0 -0.1 15 28-42 15-29 (59)
46 1ovx_A ATP-dependent CLP prote 23.6 27 0.00091 22.6 1.0 31 27-59 19-51 (67)
47 2yrc_A Protein transport prote 22.4 18 0.0006 22.6 -0.1 36 21-56 4-41 (59)
48 2ds5_A CLPX, ATP-dependent CLP 22.0 32 0.0011 20.9 1.0 30 26-57 11-42 (51)
49 2han_A Protein ultraspiracle; 21.7 47 0.0016 22.2 2.0 37 22-63 6-42 (93)
50 1qyp_A RNA polymerase II; tran 21.7 12 0.0004 22.6 -1.0 33 26-58 15-53 (57)
51 2csy_A Zinc finger protein 183 21.6 1.4E+02 0.0049 18.0 4.6 44 22-68 11-55 (81)
52 2zjr_Z 50S ribosomal protein L 21.4 14 0.00048 23.2 -0.7 27 22-57 26-52 (60)
53 2cr8_A MDM4 protein; ZF-ranbp 20.8 44 0.0015 20.8 1.5 21 19-39 4-24 (53)
54 3dzy_D Peroxisome proliferator 20.1 84 0.0029 25.8 3.6 34 23-61 47-80 (419)
No 1
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.89 E-value=6e-24 Score=140.62 Aligned_cols=60 Identities=38% Similarity=0.678 Sum_probs=52.8
Q ss_pred CCCCCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhccccccCCCcchhhhhhhccC
Q 033001 22 FNEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGRDKGRAQKRKRKYS 82 (129)
Q Consensus 22 ~~~~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~~~rp~~~~k~~~~~r~rk~~ 82 (129)
.......|++|+|++||+||+||+|+ +|||||||||+++++.||+.+++++|++|+|+.+
T Consensus 3 ~~~~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~~~~RP~~~~~~~i~~R~Rk~~ 62 (63)
T 3dfx_A 3 ARRAGTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLHNINRPLTMKKEGIQTRNRKMS 62 (63)
T ss_dssp CCCTTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHHSSCCCGGGCCSSCCCCC----
T ss_pred CCCCCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHcCCCCCcCcCCCccccccCCCC
Confidence 34567899999999999999999996 9999999999999999999999999999999875
No 2
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.87 E-value=3.4e-23 Score=138.02 Aligned_cols=60 Identities=33% Similarity=0.663 Sum_probs=55.1
Q ss_pred CCCCCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhccccccCCCcchhhhhhhccC
Q 033001 22 FNEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGRDKGRAQKRKRKYS 82 (129)
Q Consensus 22 ~~~~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~~~rp~~~~k~~~~~r~rk~~ 82 (129)
.......|++|+|++||+||+||+|+ +|||||||||++|++.||+.++++.|++|+|+..
T Consensus 5 ~~~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~RP~~~k~~~ik~R~R~~~ 64 (66)
T 4gat_A 5 EQNGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSLKTDVIKKRNRNSA 64 (66)
T ss_dssp CSSSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHHHHCSCCCGGGCCSCCCCCCCSCC
T ss_pred CCCCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHHHcCCCCchhhccccccccccCCC
Confidence 34678999999999999999999995 9999999999999999999999999998888743
No 3
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.82 E-value=5.7e-21 Score=117.78 Aligned_cols=43 Identities=40% Similarity=0.870 Sum_probs=40.0
Q ss_pred CcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhccccccCC
Q 033001 26 NKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGR 69 (129)
Q Consensus 26 ~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~~~rp~~~ 69 (129)
+..|++|++++||+||+||+|+ +|||||||||++|++.||++|
T Consensus 1 p~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~l 43 (43)
T 2vut_I 1 PTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSL 43 (43)
T ss_dssp -CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHHHSSCCCCCC
T ss_pred CCcCCccCCCCCCccccCCCCC-cccHHHHHHHHHhCCCCCCCC
Confidence 3689999999999999999995 999999999999999999875
No 4
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.80 E-value=2e-20 Score=135.85 Aligned_cols=62 Identities=37% Similarity=0.664 Sum_probs=54.0
Q ss_pred CCCCCCCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhccccccCCCcchhhhhhhccC
Q 033001 20 GTFNEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGRDKGRAQKRKRKYS 82 (129)
Q Consensus 20 ~~~~~~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~~~rp~~~~k~~~~~r~rk~~ 82 (129)
.........|+||+|+.||+||+||+| .+|||||||||++|++.||++++++.|++|+|+.+
T Consensus 53 ~~~~~~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~~~~~~rp~~~~~~~i~~r~r~~s 114 (115)
T 4hc9_A 53 SAARRAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKLHNINRPLTMKKEGIQTRNRKMS 114 (115)
T ss_dssp CCCCCTTCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSSCCCGGGCCSSCCCCC----
T ss_pred cccccccccCCCcCCCCcceeEECCCC-CCcchHHHHHHHHhCCCCCccccccchhhcccccc
Confidence 334456789999999999999999999 89999999999999999999999999999999875
No 5
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.80 E-value=1.4e-20 Score=126.93 Aligned_cols=54 Identities=28% Similarity=0.394 Sum_probs=44.1
Q ss_pred CCCCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhccccccCCCcchhhh
Q 033001 23 NEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGRDKGRAQK 76 (129)
Q Consensus 23 ~~~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~~~rp~~~~k~~~~~ 76 (129)
......|+||+|++||+||+|+.+..+|||||||||+++++.||+.+.++.+.+
T Consensus 5 ~~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~~~~~RP~~~~~~~~~~ 58 (71)
T 2kae_A 5 NKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTAVNKYQKR 58 (71)
T ss_dssp ---CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHHHHSCCCTHHHHHHHHH
T ss_pred CCCCCcCCccCCCCCCccccCCCCCCccchHHHHHHHHhCCCCCcccchhhhhh
Confidence 446789999999999999995443348999999999999999999998775443
No 6
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.79 E-value=6.7e-20 Score=114.46 Aligned_cols=43 Identities=37% Similarity=0.774 Sum_probs=40.2
Q ss_pred CCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhccccccC
Q 033001 25 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLG 68 (129)
Q Consensus 25 ~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~~~rp~~ 68 (129)
....|++|++++||+||+||+|+ +|||||||||+++++.||+.
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~ 45 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKMNGQNRPLI 45 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHHTCSCCCCC
T ss_pred CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHHcCCCCCCC
Confidence 46789999999999999999995 99999999999999999974
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.56 E-value=1.6e-15 Score=109.93 Aligned_cols=45 Identities=38% Similarity=0.824 Sum_probs=39.9
Q ss_pred CCCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhccccccCC
Q 033001 24 EMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGR 69 (129)
Q Consensus 24 ~~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~~~rp~~~ 69 (129)
...+.|+||++++||+||+|++| .+|||||||||+.++++||+..
T Consensus 3 ~~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~nRP~~K 47 (115)
T 4hc9_A 3 HMGRECVNCGATSTPLWRRDGTG-HYLCNACGLYHKMNGQNRPLIK 47 (115)
T ss_dssp ---CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSSCCCCSS
T ss_pred CCCCCCCCCCCccCCcceECCCC-CCcCcchhhhhhhccccccccc
Confidence 45789999999999999999999 7999999999999999999744
No 8
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.94 E-value=0.9 Score=33.26 Aligned_cols=45 Identities=27% Similarity=0.516 Sum_probs=35.3
Q ss_pred CCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhc----cccccCCCc
Q 033001 25 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTK----KLALLGRDK 71 (129)
Q Consensus 25 ~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~----~~rp~~~~k 71 (129)
....|++|+.. -|.|-.-..| -.+|-.|.-..|..+ +.+.+.|+.
T Consensus 28 ~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~VkSl~ld~ 76 (141)
T 2crr_A 28 DNKYCADCEAK-GPRWASWNIG-VFICIRCAGIHRNLGVHISRVKSVNLDQ 76 (141)
T ss_dssp GGSSCSSSCCS-SCCSEETTTT-EECCHHHHHHHHHHCTTTCCCBCSSSSC
T ss_pred cCCcCCCCCCC-CCCeEEeccC-eEEhhhhhHhHhcCCCCCCeeeECCCCC
Confidence 46899999987 5999999999 789999977777665 346666654
No 9
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=82.99 E-value=0.73 Score=33.74 Aligned_cols=45 Identities=27% Similarity=0.524 Sum_probs=35.5
Q ss_pred CCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhcc----ccccCCCc
Q 033001 25 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKK----LALLGRDK 71 (129)
Q Consensus 25 ~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~~----~rp~~~~k 71 (129)
....|++|+... |.|-.-..| -.+|-.|.-..|..+. .|.+.|+.
T Consensus 35 ~N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~VrSl~lD~ 83 (138)
T 2owa_A 35 ENRTCFDCESRN-PTWLSLSFA-VFICLNCSSDHRKMGVHISFVRSSDLDK 83 (138)
T ss_dssp GGGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHTTCTTTCCEEETTTSC
T ss_pred CCCcCCCCcCCC-CCeEEecCC-EEEhHhhhHHHhCCCCCCCeeeecCcCc
Confidence 568999999875 999999999 7899999877776654 35555554
No 10
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=82.77 E-value=0.83 Score=33.18 Aligned_cols=45 Identities=27% Similarity=0.490 Sum_probs=35.7
Q ss_pred CCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhcc----ccccCCCc
Q 033001 25 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKK----LALLGRDK 71 (129)
Q Consensus 25 ~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~~----~rp~~~~k 71 (129)
....|.+|+... |.|-.-..| -.+|-.|.--.+..+. .+.+.|+.
T Consensus 26 ~N~~CaDCg~~~-P~WaS~n~G-vfiC~~CsgiHR~lG~hiS~VkSl~ld~ 74 (134)
T 2iqj_A 26 DNKFCADCQSKG-PRWASWNIG-VFICIRCAGIHRNLGVHISRVKSVNLDQ 74 (134)
T ss_dssp GGGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHHCTTTCCEEETTTSC
T ss_pred CCCcCCcCcCCC-CCeEEecCC-EEEhHhhhHHHhcCCCCCCceeeccccC
Confidence 578999999875 999999999 7899999877776653 36666654
No 11
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=82.17 E-value=1 Score=33.47 Aligned_cols=46 Identities=26% Similarity=0.502 Sum_probs=35.2
Q ss_pred CCCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhcc----ccccCCCc
Q 033001 24 EMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKK----LALLGRDK 71 (129)
Q Consensus 24 ~~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~~----~rp~~~~k 71 (129)
...+.|++|+... |.|-.-..| -.+|-.|.-..|..+. .+.+.|+.
T Consensus 36 p~N~~CaDCga~~-P~WaS~nlG-vfiC~~CSgiHR~LG~hISkVkSl~LD~ 85 (147)
T 3dwd_A 36 DENNVCFECGAFN-PQWVSVTYG-IWICLECSGRHRGLGVHLSFVRSVTMDK 85 (147)
T ss_dssp TTTTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHHCTTTCCEEESCC--
T ss_pred cCCCccCCCCCCC-CCeEEeccc-EeEhHhhChHHhcCCCCCCccccccccC
Confidence 3467999999875 999999999 8999999877777654 36666654
No 12
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=81.74 E-value=0.63 Score=34.16 Aligned_cols=29 Identities=28% Similarity=0.510 Sum_probs=21.0
Q ss_pred cccccCCCCCCCcccCCCCCCCCcchHHHH
Q 033001 27 KSCIDCHTTRTPLWRGGPAGPRSLCNACGI 56 (129)
Q Consensus 27 ~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl 56 (129)
-.|..|+.++|-+-+.+..- -.-|+|||-
T Consensus 104 VlC~~C~sPdT~l~k~~r~~-~l~C~ACGa 132 (139)
T 3cw2_K 104 VECSTCKSLDTILKKEKKSW-YIVCLACGA 132 (139)
T ss_dssp SSCCSSSSSCCCSCSSCSTT-TSSCCC---
T ss_pred eECCCCCCcCcEEEEeCCeE-EEEecCCCC
Confidence 68999999999998865333 457999996
No 13
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.46 E-value=1.6 Score=32.30 Aligned_cols=46 Identities=28% Similarity=0.485 Sum_probs=36.1
Q ss_pred CCCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhcc----ccccCCCc
Q 033001 24 EMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKK----LALLGRDK 71 (129)
Q Consensus 24 ~~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~~----~rp~~~~k 71 (129)
.....|.+|+.. -|.|-.-..| -.+|-.|.-..|..+. .|.+.|+.
T Consensus 27 p~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~VrSl~LD~ 76 (149)
T 2crw_A 27 PTNKVCFDCGAK-NPSWASITYG-VFLCIDCSGSHRSLGVHLSFIRSTELDS 76 (149)
T ss_dssp TTTSBCSSSCCB-SCCCEETTTT-EECCHHHHHHHHHHCTTTCCEECSSSCC
T ss_pred cCCCcCCCCcCC-CCCcEEeccC-EEEchhcchhhccCCCCCCeeeccccCC
Confidence 357899999975 5999999999 7899999877777654 36666663
No 14
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=78.00 E-value=0.69 Score=34.37 Aligned_cols=29 Identities=24% Similarity=0.446 Sum_probs=22.8
Q ss_pred cccccCCCCCCCcccCCCCCCCCcchHHHH
Q 033001 27 KSCIDCHTTRTPLWRGGPAGPRSLCNACGI 56 (129)
Q Consensus 27 ~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl 56 (129)
-.|..|+.++|-+-+.+..- -.-|+|||-
T Consensus 105 VlC~~C~sPdT~L~k~~r~~-~l~C~ACGa 133 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDRFH-FLKCEACGA 133 (148)
T ss_dssp SSCSSSCCTTCCCCBSSSSB-CCCCSSSCC
T ss_pred EECCCCCCcCcEEEEeCCEE-EEEecCCCC
Confidence 47999999999998765333 356999985
No 15
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=75.91 E-value=0.19 Score=28.93 Aligned_cols=28 Identities=29% Similarity=0.617 Sum_probs=20.8
Q ss_pred ccccCCCCCCCcccCCCCCCCCcchHHHH
Q 033001 28 SCIDCHTTRTPLWRGGPAGPRSLCNACGI 56 (129)
Q Consensus 28 ~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl 56 (129)
.|..|+.++|-+=+.+..- -.-|+|||-
T Consensus 2 lC~~C~~peT~l~~~~~~~-~l~C~aCG~ 29 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVH-LLKCMACGA 29 (36)
T ss_dssp CCSSSCSCEEEEEEETTEE-EEEEETTTE
T ss_pred CCcCCCCCCcEEEEeCCcE-EEEhhcCCC
Confidence 5999999999998754222 234999984
No 16
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=74.44 E-value=0.67 Score=33.99 Aligned_cols=29 Identities=31% Similarity=0.670 Sum_probs=22.6
Q ss_pred cccccCCCCCCCcccCCCCCCCCcchHHHH
Q 033001 27 KSCIDCHTTRTPLWRGGPAGPRSLCNACGI 56 (129)
Q Consensus 27 ~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl 56 (129)
-.|..|+.++|-+-+.+..- -.-|+|||-
T Consensus 103 VlC~~C~sPdT~l~k~~r~~-~l~C~ACGa 131 (138)
T 1nee_A 103 VICHECNRPDTRIIREGRIS-LLKCEACGA 131 (138)
T ss_dssp HHHTCCSSCSSCCEEETTTT-EEECSTTSC
T ss_pred EECCCCCCcCcEEEEcCCeE-EEEccCCCC
Confidence 46999999999998865333 346999984
No 17
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=74.25 E-value=2.1 Score=32.36 Aligned_cols=45 Identities=27% Similarity=0.437 Sum_probs=34.7
Q ss_pred CCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhccc----cccCCCc
Q 033001 25 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKL----ALLGRDK 71 (129)
Q Consensus 25 ~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~~~----rp~~~~k 71 (129)
....|++|+.. -|.|-.-..| -.+|-.|.-..|..+.+ |.+.|+.
T Consensus 21 ~N~~CaDCga~-~P~WaS~nlG-vflCi~CSGiHR~LG~hISkVKSltLD~ 69 (163)
T 3sub_A 21 SNNKCFDCGIS-NPDWVSVNHG-IFLCINCSGVHRSLGVHISIVRSIKMDI 69 (163)
T ss_dssp GGGBCTTTCCB-SCCEEETTTT-EEECHHHHHHHHHTCTTTCCEEETTTCC
T ss_pred CCCccccCCCC-CCCeEEecCC-eeEHHhhhHHhcCCCCCCCeeeeccccC
Confidence 46799999996 5999999999 89999997767765542 5555553
No 18
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=73.67 E-value=1.6 Score=32.23 Aligned_cols=46 Identities=28% Similarity=0.486 Sum_probs=35.8
Q ss_pred CCCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhcc----ccccCCCc
Q 033001 24 EMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKK----LALLGRDK 71 (129)
Q Consensus 24 ~~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~~----~rp~~~~k 71 (129)
...+.|.+|+... |.|-.-..| -.+|-.|.-..+..+. .+.+.|+.
T Consensus 35 p~N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR~LG~hIS~VrSl~LD~ 84 (144)
T 2p57_A 35 PTNKACFDCGAKN-PSWASITYG-VFLCIDCSGVHRSLGVHLSFIRSTELDS 84 (144)
T ss_dssp GGGGBCTTTCCBS-CCEEEGGGT-EEECHHHHHHHHHHCTTTCCEEESSSCC
T ss_pred CCCCcCCCCcCCC-CCeEEeccC-EEEhhhchHHHcCCCCCCCeeeecccCC
Confidence 3578999999864 999998889 7899999877777653 35566653
No 19
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=71.39 E-value=1.6 Score=27.19 Aligned_cols=30 Identities=23% Similarity=0.473 Sum_probs=21.1
Q ss_pred CcccccCCCCCCCcccCCCCCCCCcchHHHHHH
Q 033001 26 NKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRY 58 (129)
Q Consensus 26 ~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~ 58 (129)
...|.+|+.+. +-.....| ..+|..||+-+
T Consensus 11 ~~~Cp~C~~~~--lv~D~~~g-e~vC~~CGlVl 40 (58)
T 1dl6_A 11 RVTCPNHPDAI--LVEDYRAG-DMICPECGLVV 40 (58)
T ss_dssp CCSBTTBSSSC--CEECSSSC-CEECTTTCCEE
T ss_pred cccCcCCCCCc--eeEeCCCC-eEEeCCCCCEE
Confidence 34799998755 44444556 78999999843
No 20
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=68.76 E-value=3.2 Score=32.08 Aligned_cols=45 Identities=27% Similarity=0.451 Sum_probs=34.5
Q ss_pred CCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhcc----ccccCCCc
Q 033001 25 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKK----LALLGRDK 71 (129)
Q Consensus 25 ~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~~----~rp~~~~k 71 (129)
....|.+|+... |.|-.-.-| ..+|-.|.--.|..+. .|.+.++.
T Consensus 41 ~n~~c~dc~~~~-p~w~s~~~g-~~~c~~cs~~hr~lg~~is~v~sl~lD~ 89 (301)
T 2b0o_E 41 GNSQCCDCGAAD-PTWLSTNLG-VLTCIQCSGVHRELGVRFSRMQSLTLDL 89 (301)
T ss_dssp TTTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHHCTTTCCEEETTTSC
T ss_pred CCCcCCCCCCCC-CCeEEeecC-eEEcHHHHHHHHhhCCCcccccccCcCC
Confidence 478999999965 999999999 8999999665565443 25566653
No 21
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=67.71 E-value=1.7 Score=35.25 Aligned_cols=33 Identities=18% Similarity=0.515 Sum_probs=22.1
Q ss_pred CCcccccCCCCCCCcccCCCCCCCCcchHHHHHH
Q 033001 25 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRY 58 (129)
Q Consensus 25 ~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~ 58 (129)
....|.+|+.+.+.+-.+...| ..+|..||+-.
T Consensus 20 ~~~~Cp~Cg~~~~~iv~D~~~G-~~vC~~CG~Vl 52 (345)
T 3k7a_M 20 IVLTCPECKVYPPKIVERFSEG-DVVCALCGLVL 52 (345)
T ss_dssp CCCCCSTTCCSCCCCCCCSSSC-SCCCSSSCCCC
T ss_pred CCCcCcCCCCCCCceEEECCCC-CEecCCCCeEc
Confidence 4567999988743232334467 78999999843
No 22
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=67.47 E-value=2.9 Score=30.51 Aligned_cols=45 Identities=20% Similarity=0.527 Sum_probs=34.6
Q ss_pred CCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhc---cccccCCCc
Q 033001 25 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTK---KLALLGRDK 71 (129)
Q Consensus 25 ~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~---~~rp~~~~k 71 (129)
....|.+|+.. -|.|-.-..| -.+|-.|.--.|..+ +.+.+.|+.
T Consensus 24 ~N~~CaDCg~~-~P~WaS~n~G-vfiC~~CsgiHR~LG~~s~VrSl~ld~ 71 (140)
T 2olm_A 24 HNRKCFDCDQR-GPTYVNMTVG-SFVCTSCSGSLRGLNPPHRVKSISMTT 71 (140)
T ss_dssp GGGSCTTTCSS-CCCEEETTTT-EEECHHHHHHHTTSSSCCCEEETTTCC
T ss_pred CCCcCCCCCCC-CCCceeeccC-EEEchhccchhccCCCcceeeecCCCC
Confidence 46899999986 6999999999 789999976666543 346666654
No 23
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=64.21 E-value=5.2 Score=32.34 Aligned_cols=46 Identities=30% Similarity=0.540 Sum_probs=35.3
Q ss_pred CCCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhc----cccccCCCc
Q 033001 24 EMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTK----KLALLGRDK 71 (129)
Q Consensus 24 ~~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~----~~rp~~~~k 71 (129)
.....|.+|+.. -|.|-.-..| -.+|-.|.=-.|..+ +.+.+.|+.
T Consensus 43 ~~n~~c~dc~~~-~p~w~s~~~g-~~~c~~c~~~hr~lg~~~s~v~s~~~d~ 92 (368)
T 3jue_A 43 DGNAQCCDCREP-APEWASINLG-VTLCIQCSGIHRSLGVHFSKVRSLTLDS 92 (368)
T ss_dssp TTTTBCTTTCCB-SCCEEETTTT-EEECHHHHHHHHHHCTTTCCEEETTTSC
T ss_pred CCcCcCCCCCCC-CCCeEEecCC-eEEcHhHHHHHhccCCCcCeeEEeeccc
Confidence 357899999986 5999999999 899999976666654 345566554
No 24
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=57.33 E-value=6 Score=31.26 Aligned_cols=45 Identities=27% Similarity=0.467 Sum_probs=34.8
Q ss_pred CCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhccc----cccCCCc
Q 033001 25 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKL----ALLGRDK 71 (129)
Q Consensus 25 ~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~~~----rp~~~~k 71 (129)
....|.+|+.. -|.|-.-.-| -.+|-.|.--.|..+.+ +.+.|++
T Consensus 36 ~n~~c~dc~~~-~~~~~~~~~~-~~~c~~c~~~hr~~~~~~s~v~s~~~~~ 84 (329)
T 3o47_A 36 ENNVCFECGAF-NPQWVSVTYG-IWICLECSGRHRGLGVHLSFVRSVTMDK 84 (329)
T ss_dssp TTTBCTTTCCB-SCCEEEGGGT-EEECHHHHHHHHHHCTTTCCEEESSSCC
T ss_pred CCCcCCCCCCC-CCCeEEecCC-EEEChhhhhhhcccCCCcCEEeeccccC
Confidence 46789999985 5799998899 78999998777776543 5556554
No 25
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=56.17 E-value=1.3 Score=33.55 Aligned_cols=30 Identities=27% Similarity=0.562 Sum_probs=21.8
Q ss_pred cccccCCCCCCCcccCCCCCC-CCcchHHHH
Q 033001 27 KSCIDCHTTRTPLWRGGPAGP-RSLCNACGI 56 (129)
Q Consensus 27 ~~C~~C~tt~Tp~WRrgp~G~-~~LCNaCGl 56 (129)
-.|..|+.++|-+-+....+- -.-|+|||-
T Consensus 97 VlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa 127 (170)
T 2g2k_A 97 VLCPECENPETDLHVNPKKQTIGNSCKACGY 127 (170)
T ss_dssp HSCTTTSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccccCC
Confidence 469999999999988322221 245999995
No 26
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=55.24 E-value=6.1 Score=30.13 Aligned_cols=52 Identities=17% Similarity=0.297 Sum_probs=32.4
Q ss_pred CCcccccCCCCCCCcccCCCCCCCCcchHHHH---------HHHHhccccccCCCcchhhhhhhcc
Q 033001 25 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGI---------RYRKTKKLALLGRDKGRAQKRKRKY 81 (129)
Q Consensus 25 ~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl---------~~~k~~~~rp~~~~k~~~~~r~rk~ 81 (129)
....|.+|+...+|. .+...+|..|+. ||...+..+.+..+...|+++-|+.
T Consensus 9 ~~~~Cw~C~~~~~~~-----~~~~~fC~~c~~~q~~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L 69 (207)
T 3bvo_A 9 NYPRCWNCGGPWGPG-----REDRFFCPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQL 69 (207)
T ss_dssp --CBCSSSCCBCCSS-----CSCCCBCTTTCCBCCCCTTCCHHHHTTSCSCSCCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCcccc-----cccccccccccccCCCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 567899999764432 344678999963 6666666554455555666665554
No 27
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=54.55 E-value=2 Score=25.44 Aligned_cols=30 Identities=27% Similarity=0.615 Sum_probs=18.9
Q ss_pred CcccccCCCCCCCcccCCCCCCCCcchHHHHHH
Q 033001 26 NKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRY 58 (129)
Q Consensus 26 ~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~ 58 (129)
...|.+|+.+ ++-.....| ...|..||+-|
T Consensus 5 ~~~CP~C~~~--~l~~d~~~g-elvC~~CG~v~ 34 (50)
T 1pft_A 5 QKVCPACESA--ELIYDPERG-EIVCAKCGYVI 34 (50)
T ss_dssp CCSCTTTSCC--CEEEETTTT-EEEESSSCCBC
T ss_pred cEeCcCCCCc--ceEEcCCCC-eEECcccCCcc
Confidence 4568888763 343333345 67888888744
No 28
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.15 E-value=2 Score=32.15 Aligned_cols=30 Identities=27% Similarity=0.562 Sum_probs=21.5
Q ss_pred cccccCCCCCCCcccCCCCCC-CCcchHHHH
Q 033001 27 KSCIDCHTTRTPLWRGGPAGP-RSLCNACGI 56 (129)
Q Consensus 27 ~~C~~C~tt~Tp~WRrgp~G~-~~LCNaCGl 56 (129)
-.|..|+.++|-+-+....+- -.-|+|||-
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa 134 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTIGNSCKACGY 134 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEEEEECSSSCC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccCCCC
Confidence 479999999999986222221 245999995
No 29
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=50.25 E-value=3.7 Score=29.54 Aligned_cols=32 Identities=25% Similarity=0.426 Sum_probs=25.3
Q ss_pred CCcccccCCCCCCCcccCCCCCCCCcchHHHH
Q 033001 25 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGI 56 (129)
Q Consensus 25 ~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl 56 (129)
..+.|..||+..+...-.|..+....|-.||.
T Consensus 2 ~~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~~ 33 (189)
T 3cng_A 2 HMKFCSQCGGEVILRIPEGDTLPRYICPKCHT 33 (189)
T ss_dssp -CCBCTTTCCBCEEECCTTCSSCEEEETTTTE
T ss_pred CcccCchhCCccccccccCCCCcceECCCCCC
Confidence 35789999999988766676666678999993
No 30
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=43.12 E-value=3 Score=34.03 Aligned_cols=30 Identities=20% Similarity=0.561 Sum_probs=16.2
Q ss_pred CcccccCCCCCCCcccCCCCCCCCcchHHHH
Q 033001 26 NKSCIDCHTTRTPLWRGGPAGPRSLCNACGI 56 (129)
Q Consensus 26 ~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl 56 (129)
...|.+|+...+-+--+-..| .++|..||+
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G-~~vC~~CGl 50 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEG-DVVCALCGL 50 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGT-EEEETTTCB
T ss_pred CCcCCCCCCCCCceeEECCCC-cEEeCCCCC
Confidence 346777776333332233455 677777764
No 31
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=41.20 E-value=17 Score=27.53 Aligned_cols=46 Identities=26% Similarity=0.398 Sum_probs=35.0
Q ss_pred CCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhcc----ccccCCCcc
Q 033001 25 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKK----LALLGRDKG 72 (129)
Q Consensus 25 ~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~~----~rp~~~~k~ 72 (129)
....|.+|+... |.|-.-.-| -.+|-.|.-..+..+. .|.+.++.-
T Consensus 16 ~n~~c~dc~~~~-p~w~s~~~g-~~~c~~c~~~hr~lg~~is~v~s~~~d~~ 65 (278)
T 1dcq_A 16 GNDVCCDCGAPD-PTWLSTNLG-ILTCIECSGIHRELGVHYSRMQSLTLDVL 65 (278)
T ss_dssp TTTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHHCTTTCCEEETTTSCC
T ss_pred CCCcCCCCCCCC-CCeEEecCC-eEEcHHHHHHHhhcCCCcceeeeeecCCC
Confidence 467899999985 699999999 7899999776776653 244566553
No 32
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=40.53 E-value=8.9 Score=31.50 Aligned_cols=45 Identities=27% Similarity=0.488 Sum_probs=33.5
Q ss_pred CCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHh---ccccccCCCc
Q 033001 25 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKT---KKLALLGRDK 71 (129)
Q Consensus 25 ~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~---~~~rp~~~~k 71 (129)
....|++|++. -|.|-.-.-| -.+|-.|.--.+.. .+.+.+.|+.
T Consensus 33 ~N~~C~dC~~~-~p~w~s~~~g-~~~C~~Csg~hr~l~his~v~s~~ld~ 80 (386)
T 3lju_X 33 GNARCADCGAP-DPDWASYTLG-VFICLSCSGIHRNIPQVSKVKSVRLDA 80 (386)
T ss_dssp GGSBCTTTCCB-SCCEEETTTT-EEECHHHHHHHHTCTTTCCEEETTTSC
T ss_pred CCCcCccCCCC-CCCeEEeccc-EEEhhhhchHhhCCCccceeeeecccC
Confidence 35689999997 7999999999 78999997655543 2335666654
No 33
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=40.52 E-value=3.7 Score=25.93 Aligned_cols=20 Identities=35% Similarity=1.027 Sum_probs=15.9
Q ss_pred CCCCCCCCcchHHHHHHHHh
Q 033001 42 GGPAGPRSLCNACGIRYRKT 61 (129)
Q Consensus 42 rgp~G~~~LCNaCGl~~~k~ 61 (129)
.+|+||.+-|.-||..|-.+
T Consensus 7 ~~~~~P~~eC~lC~vkYs~r 26 (55)
T 2yrk_A 7 GGTDGTKPECTLCGVKYSAR 26 (55)
T ss_dssp CCCCCCCSCCTTTTCCCCSS
T ss_pred CCCCCCCccccccCcccccc
Confidence 47889889999999866544
No 34
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=35.29 E-value=5.6 Score=30.88 Aligned_cols=32 Identities=19% Similarity=0.561 Sum_probs=22.1
Q ss_pred CCCcccccCCCCCCCcccCCCCCCCCcchHHHH
Q 033001 24 EMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGI 56 (129)
Q Consensus 24 ~~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl 56 (129)
.....|..|+...+-+--.-..| .++|..||+
T Consensus 19 n~~~~CPECGs~~t~IV~D~erG-E~VCsdCGL 50 (197)
T 3k1f_M 19 NIVLTCPECKVYPPKIVERFSEG-DVVCALCGL 50 (197)
T ss_dssp CCCCCCTTTCCSSCCEEEEGGGT-EEEETTTCB
T ss_pred ccCeECcCCCCcCCeEEEeCCCC-EEEEcCCCC
Confidence 34558999998544343333456 789999998
No 35
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=33.16 E-value=16 Score=23.30 Aligned_cols=32 Identities=31% Similarity=0.459 Sum_probs=23.6
Q ss_pred CCCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHH
Q 033001 24 EMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRK 60 (129)
Q Consensus 24 ~~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k 60 (129)
...-.|.+|++..+.. .+...-|..||-+...
T Consensus 19 ~v~Y~C~~Cg~~~~l~-----~~~~iRC~~CG~RILy 50 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQ-----AKEVIRCRECGHRVMY 50 (63)
T ss_dssp CCCCBCSSSCCBCCCC-----SSSCCCCSSSCCCCCB
T ss_pred CeEEECCCCCCeeecC-----CCCceECCCCCcEEEE
Confidence 5678999999988755 2346789999964443
No 36
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=30.70 E-value=5.4 Score=29.82 Aligned_cols=26 Identities=31% Similarity=0.756 Sum_probs=18.3
Q ss_pred CCcccccCCCCCCCcccCCCCCCCCcchHHHH
Q 033001 25 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGI 56 (129)
Q Consensus 25 ~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl 56 (129)
..++|.+||...+ |..-|. .|..||-
T Consensus 154 ~~~~C~~CG~~~~-----g~~~p~-~CP~C~~ 179 (191)
T 1lko_A 154 TKWRCRNCGYVHE-----GTGAPE-LCPACAH 179 (191)
T ss_dssp EEEEETTTCCEEE-----EEECCS-BCTTTCC
T ss_pred ceEEECCCCCEee-----CCCCCC-CCCCCcC
Confidence 3799999998865 323322 8888886
No 37
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=29.73 E-value=41 Score=27.46 Aligned_cols=45 Identities=27% Similarity=0.476 Sum_probs=32.8
Q ss_pred CCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhc----cccccCCCc
Q 033001 25 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTK----KLALLGRDK 71 (129)
Q Consensus 25 ~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~----~~rp~~~~k 71 (129)
....|.+|+. .-|.|-.-..| -.+|-.|.=-.|.-+ +.|.+.++.
T Consensus 22 ~n~~c~dc~~-~~p~w~s~~~~-~~~c~~c~~~hr~lg~~~s~vrsl~ld~ 70 (497)
T 3lvq_E 22 GNSQCCDCGA-ADPTWLSTNLG-VLTCIQCSGVHRELGVRFSRMQSLTLDL 70 (497)
T ss_dssp TTTBCTTTCC-BSCCEEETTTT-EEECHHHHHHHHHHCTTTCCEEETTTSC
T ss_pred CCCcccCCCC-CCCCEEEechh-HHhHHhhHHHHHhhccccceecccccCC
Confidence 4778999996 56899999889 789999966555544 334555443
No 38
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=29.50 E-value=9.6 Score=28.18 Aligned_cols=26 Identities=27% Similarity=0.571 Sum_probs=18.6
Q ss_pred CCCcccccCCCCCCCcccCCCCCCCCcchHHHH
Q 033001 24 EMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGI 56 (129)
Q Consensus 24 ~~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl 56 (129)
...++|.+||....+ .-| ..|..||-
T Consensus 136 ~~~~~C~~CG~i~~~------~~p-~~CP~Cg~ 161 (170)
T 3pwf_A 136 KKVYICPICGYTAVD------EAP-EYCPVCGA 161 (170)
T ss_dssp SCEEECTTTCCEEES------CCC-SBCTTTCC
T ss_pred CCeeEeCCCCCeeCC------CCC-CCCCCCCC
Confidence 467999999998652 222 28999984
No 39
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=28.00 E-value=9.1 Score=30.87 Aligned_cols=35 Identities=23% Similarity=0.574 Sum_probs=25.0
Q ss_pred CcccccCCCCCCCcc----cCCCCCC--CCcchHHHHHHHH
Q 033001 26 NKSCIDCHTTRTPLW----RGGPAGP--RSLCNACGIRYRK 60 (129)
Q Consensus 26 ~~~C~~C~tt~Tp~W----Rrgp~G~--~~LCNaCGl~~~k 60 (129)
...|..|+-...-.| |...++. -+.|..||-.|+.
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~f 308 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWKF 308 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCceec
Confidence 458999998887655 4454442 2579999998863
No 40
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=27.45 E-value=12 Score=24.19 Aligned_cols=29 Identities=17% Similarity=0.486 Sum_probs=21.5
Q ss_pred CCCCcccccCCCCCCCcccCCCCCCCCcchHHHH
Q 033001 23 NEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGI 56 (129)
Q Consensus 23 ~~~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl 56 (129)
....-.|.+||...... .+...-|..||-
T Consensus 25 ~~v~Y~C~~CG~~~e~~-----~~d~irCp~CG~ 53 (70)
T 1twf_L 25 ATLKYICAECSSKLSLS-----RTDAVRCKDCGH 53 (70)
T ss_dssp CCCCEECSSSCCEECCC-----TTSTTCCSSSCC
T ss_pred ceEEEECCCCCCcceeC-----CCCCccCCCCCc
Confidence 45667899999987665 223468999996
No 41
>2l1q_A Liver-expressed antimicrobial peptide 2; polypeptide, disulfides, antimicrobial protein, LEAP-2; NMR {Homo sapiens}
Probab=27.37 E-value=17 Score=21.51 Aligned_cols=7 Identities=71% Similarity=1.630 Sum_probs=5.8
Q ss_pred CCcccCC
Q 033001 37 TPLWRGG 43 (129)
Q Consensus 37 Tp~WRrg 43 (129)
||+||--
T Consensus 2 TP~WR~v 8 (40)
T 2l1q_A 2 TPFWRGV 8 (40)
T ss_dssp CCTTSSC
T ss_pred cchhhhh
Confidence 8999964
No 42
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=26.89 E-value=14 Score=28.00 Aligned_cols=30 Identities=17% Similarity=0.379 Sum_probs=21.7
Q ss_pred CCCcccccCCCCCCCcccCCCCCCCCcchHHHH
Q 033001 24 EMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGI 56 (129)
Q Consensus 24 ~~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl 56 (129)
.....|..||.+.. .|-- .+| ...|+.||-
T Consensus 12 ~~~~~CP~Cg~~d~-~~~~-~dg-~~~C~~Cg~ 41 (255)
T 1nui_A 12 LYHIPCDNCGSSDG-NSLF-SDG-HTFCYVCEK 41 (255)
T ss_dssp EEEECCSSSCCSSC-EEEE-TTS-CEEETTTCC
T ss_pred ecCCcCCCCCCCCC-ceEe-CCC-CeecccCCC
Confidence 34779999999764 5533 356 589999994
No 43
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=24.62 E-value=14 Score=25.30 Aligned_cols=29 Identities=21% Similarity=0.576 Sum_probs=20.6
Q ss_pred CCCCcccccCCCCCCCcccCCCCCCCC-cchHHHHH
Q 033001 23 NEMNKSCIDCHTTRTPLWRGGPAGPRS-LCNACGIR 57 (129)
Q Consensus 23 ~~~~~~C~~C~tt~Tp~WRrgp~G~~~-LCNaCGl~ 57 (129)
......|.+||..-++. .+.. .|..||-.
T Consensus 70 ~p~~~~C~~CG~~~e~~------~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 70 EKVELECKDCSHVFKPN------ALDYGVCEKCHSK 99 (119)
T ss_dssp ECCEEECSSSSCEECSC------CSTTCCCSSSSSC
T ss_pred ccceEEcCCCCCEEeCC------CCCCCcCccccCC
Confidence 34578999999887662 2245 79999864
No 44
>1tzs_X 23-MER peptide from PELB-IGG kappa light chain fusion protein; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=23.70 E-value=33 Score=18.41 Aligned_cols=14 Identities=29% Similarity=0.140 Sum_probs=10.7
Q ss_pred HHHHHHHHHhhhcc
Q 033001 113 EQAAILLMSLSYGC 126 (129)
Q Consensus 113 e~Aa~llm~ls~g~ 126 (129)
-.||.||.++|-..
T Consensus 7 piAaGLLLa~sqp~ 20 (26)
T 1tzs_X 7 TAAAGLLLLAAQPA 20 (26)
T ss_pred hHHHHHHHHhcChH
Confidence 36899999988554
No 45
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=23.69 E-value=16 Score=23.03 Aligned_cols=15 Identities=33% Similarity=0.857 Sum_probs=12.8
Q ss_pred ccccCCCCCCCcccC
Q 033001 28 SCIDCHTTRTPLWRG 42 (129)
Q Consensus 28 ~C~~C~tt~Tp~WRr 42 (129)
.|.||+..+|+-|..
T Consensus 15 ~CpnC~~~tt~~~~G 29 (59)
T 3lpe_B 15 ICPICHSPTSENWIG 29 (59)
T ss_dssp BCTTTCCBEESCEEC
T ss_pred CCCCCCCCccCCEee
Confidence 699999888999964
No 46
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=23.59 E-value=27 Score=22.63 Aligned_cols=31 Identities=19% Similarity=0.443 Sum_probs=21.1
Q ss_pred cccccCCCCCCCcc--cCCCCCCCCcchHHHHHHH
Q 033001 27 KSCIDCHTTRTPLW--RGGPAGPRSLCNACGIRYR 59 (129)
Q Consensus 27 ~~C~~C~tt~Tp~W--Rrgp~G~~~LCNaCGl~~~ 59 (129)
..|+-||.++...= =.|| | .+.||.|--.-.
T Consensus 19 ~~CSFCGK~e~eV~~LIaGp-g-vyICdeCI~~c~ 51 (67)
T 1ovx_A 19 LYCSFCGKSQHEVRKLIAGP-S-VYICDECVDLCN 51 (67)
T ss_dssp CCCTTTCCCTTTSSSEEECS-S-CEEEHHHHHHHH
T ss_pred cEecCCCCCHHHHcccCCCC-C-CChhHHHHHHHH
Confidence 57999999875431 2344 4 589999975443
No 47
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=22.42 E-value=18 Score=22.58 Aligned_cols=36 Identities=19% Similarity=0.251 Sum_probs=29.9
Q ss_pred CCCCCCccccc--CCCCCCCcccCCCCCCCCcchHHHH
Q 033001 21 TFNEMNKSCID--CHTTRTPLWRGGPAGPRSLCNACGI 56 (129)
Q Consensus 21 ~~~~~~~~C~~--C~tt~Tp~WRrgp~G~~~LCNaCGl 56 (129)
.....+.+|.. |++---|.++=...|....||-|+.
T Consensus 4 ~~~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~ 41 (59)
T 2yrc_A 4 GSSGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQ 41 (59)
T ss_dssp SSCCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCC
T ss_pred cCCCCCcccCCCCCCeEECCceEEECCCCEEEcccCCC
Confidence 34566889998 9999999998877776789999975
No 48
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=22.00 E-value=32 Score=20.93 Aligned_cols=30 Identities=20% Similarity=0.437 Sum_probs=20.4
Q ss_pred CcccccCCCCCCCc--ccCCCCCCCCcchHHHHH
Q 033001 26 NKSCIDCHTTRTPL--WRGGPAGPRSLCNACGIR 57 (129)
Q Consensus 26 ~~~C~~C~tt~Tp~--WRrgp~G~~~LCNaCGl~ 57 (129)
...|+-||.++... -=.|| | .+.||.|--.
T Consensus 11 ~~~CSFCGk~~~ev~~LIaGp-g-v~IC~eCi~~ 42 (51)
T 2ds5_A 11 LLYCSFCGKSQHEVRKLIAGP-S-VYICDECVDL 42 (51)
T ss_dssp CCBCTTTCCBTTTSSCEEECS-S-CEEEHHHHHH
T ss_pred CcEecCCCCCHHHhcccCCCC-C-CEehHHHHHH
Confidence 35899999987543 12344 3 5899999754
No 49
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=21.73 E-value=47 Score=22.23 Aligned_cols=37 Identities=16% Similarity=0.361 Sum_probs=24.4
Q ss_pred CCCCCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhcc
Q 033001 22 FNEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKK 63 (129)
Q Consensus 22 ~~~~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~~ 63 (129)
.+.....|.-|+...+.. -.| ...|+||-.++++.-.
T Consensus 6 ~~~~~~~C~VCgd~a~g~----hyG-v~sC~aCk~FFRR~v~ 42 (93)
T 2han_A 6 LSGSKHLCSICGDRASGK----HYG-VYSCEGCKGFFKRTVR 42 (93)
T ss_dssp ----CCBCTTTCSBCCEE----ETT-EEECHHHHHHHHHHHH
T ss_pred CCCCCCCCcEeCCCCcCe----ecC-cchhHHHHHHHHhhhc
Confidence 344567899999765432 245 6789999999987643
No 50
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=21.68 E-value=12 Score=22.61 Aligned_cols=33 Identities=21% Similarity=0.471 Sum_probs=22.4
Q ss_pred CcccccCCCCC----CCcccCCCCCC--CCcchHHHHHH
Q 033001 26 NKSCIDCHTTR----TPLWRGGPAGP--RSLCNACGIRY 58 (129)
Q Consensus 26 ~~~C~~C~tt~----Tp~WRrgp~G~--~~LCNaCGl~~ 58 (129)
...|..|+-.. +-+||...++. -+.|..||-.|
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w 53 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTW 53 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEE
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEe
Confidence 56799999854 34677766552 25788888644
No 51
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.61 E-value=1.4e+02 Score=17.99 Aligned_cols=44 Identities=14% Similarity=0.360 Sum_probs=31.4
Q ss_pred CCCCCcccccCCCCCC-CcccCCCCCCCCcchHHHHHHHHhccccccC
Q 033001 22 FNEMNKSCIDCHTTRT-PLWRGGPAGPRSLCNACGIRYRKTKKLALLG 68 (129)
Q Consensus 22 ~~~~~~~C~~C~tt~T-p~WRrgp~G~~~LCNaCGl~~~k~~~~rp~~ 68 (129)
.......|.-|...-+ |.- -+-| +++|-.|...|......-|+-
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~--~~Cg-H~fC~~Ci~~~~~~~~~CP~C 55 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVV--TKCR-HYFCESCALEHFRATPRCYIC 55 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEE--CTTS-CEEEHHHHHHHHHHCSBCSSS
T ss_pred cCCCCCCCcCCCchhcCeeE--ccCC-CHhHHHHHHHHHHCCCcCCCc
Confidence 3345678999987643 432 4678 899999999998876666654
No 52
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=21.39 E-value=14 Score=23.19 Aligned_cols=27 Identities=22% Similarity=0.609 Sum_probs=19.3
Q ss_pred CCCCCcccccCCCCCCCcccCCCCCCCCcchHHHHH
Q 033001 22 FNEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIR 57 (129)
Q Consensus 22 ~~~~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~ 57 (129)
.......|.+||...- ++.+|..||.|
T Consensus 26 ~~p~l~~c~~cG~~~~---------pH~vc~~CG~Y 52 (60)
T 2zjr_Z 26 TAPNLTECPQCHGKKL---------SHHICPNCGYY 52 (60)
T ss_dssp CCCCCEECTTTCCEEC---------TTBCCTTTCBS
T ss_pred cCCCceECCCCCCEeC---------CceEcCCCCcC
Confidence 3455778999987632 36799999943
No 53
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=20.77 E-value=44 Score=20.77 Aligned_cols=21 Identities=19% Similarity=0.433 Sum_probs=17.5
Q ss_pred CCCCCCCCcccccCCCCCCCc
Q 033001 19 AGTFNEMNKSCIDCHTTRTPL 39 (129)
Q Consensus 19 ~~~~~~~~~~C~~C~tt~Tp~ 39 (129)
.+++....+.|..|.+..+|+
T Consensus 4 ~~~~~eD~WkC~~C~k~N~Pl 24 (53)
T 2cr8_A 4 GSSGSEDEWQCTECKKFNSPS 24 (53)
T ss_dssp CSSCCSCCEECSSSCCEECSS
T ss_pred CcCCCcceeecccccccCCCc
Confidence 345667789999999999998
No 54
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=20.08 E-value=84 Score=25.83 Aligned_cols=34 Identities=24% Similarity=0.475 Sum_probs=23.4
Q ss_pred CCCCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHh
Q 033001 23 NEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKT 61 (129)
Q Consensus 23 ~~~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~ 61 (129)
......|.-||...+-. ..| ..-|++|..++++.
T Consensus 47 ~~~~~~C~vC~~~~~g~----hyg-v~~C~~C~~FFrR~ 80 (419)
T 3dzy_D 47 SLMAIECRVCGDKASGF----HYG-VHACEGCKGFFRRT 80 (419)
T ss_dssp ---CCCCSSSCSCCCSB----CSS-SBCCHHHHHHHHHH
T ss_pred CCCCCcCeECCCcCCCC----ccC-cccchhhhHHHccc
Confidence 34466799999765532 356 67899999999874
Done!