Query 033001
Match_columns 129
No_of_seqs 185 out of 805
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 13:55:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033001.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033001hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3gata_ g.39.1.1 (A:) Erythroi 99.9 4.1E-23 3E-27 136.1 4.0 60 25-85 3-62 (66)
2 d2vuti1 g.39.1.1 (I:671-712) E 99.8 1.7E-22 1.3E-26 122.6 3.4 41 28-69 2-42 (42)
3 d1y0ja1 g.39.1.1 (A:200-238) E 99.8 1.2E-20 8.7E-25 112.8 2.8 38 26-64 2-39 (39)
4 d1neea2 g.59.1.1 (A:99-135) Zi 89.2 0.037 2.7E-06 31.2 0.1 28 28-56 3-30 (37)
5 d1dcqa2 g.45.1.1 (A:247-368) P 87.9 0.19 1.4E-05 34.0 3.2 45 25-71 14-62 (122)
6 d1k81a_ g.59.1.1 (A:) Zinc-bin 83.5 0.036 2.6E-06 31.0 -2.0 28 28-56 2-29 (36)
7 d1pfta_ g.41.3.1 (A:) Transcri 75.7 0.19 1.4E-05 29.4 -0.7 28 26-56 5-32 (50)
8 d1dl6a_ g.41.3.1 (A:) Transcri 72.5 0.65 4.7E-05 27.8 1.2 30 24-56 9-38 (58)
9 d2yrka1 g.37.1.4 (A:8-55) Zinc 56.1 0.66 4.8E-05 27.2 -1.0 19 43-61 1-19 (48)
10 d1u5ka2 g.45.1.2 (A:81-237) Re 48.4 2.4 0.00017 28.5 0.7 28 26-55 70-97 (157)
11 d2j0151 g.41.8.5 (5:2-60) Ribo 45.1 2.7 0.00019 25.1 0.5 25 24-57 27-51 (59)
12 d1pd0a5 g.41.10.1 (A:216-300) 41.7 4.8 0.00035 25.0 1.3 34 23-56 10-43 (85)
13 d1twfi2 g.41.3.1 (I:50-121) RB 40.8 1.5 0.00011 27.2 -1.2 38 26-63 23-66 (72)
14 d2zjrz1 g.41.8.5 (Z:2-59) Ribo 34.9 2.7 0.0002 25.0 -0.7 25 24-57 27-51 (58)
15 d1lo1a_ g.39.1.2 (A:) Steroid 32.6 8.2 0.0006 24.4 1.4 32 26-62 4-35 (90)
16 d1hcqa_ g.39.1.2 (A:) Estrogen 32.6 9.3 0.00068 23.2 1.6 33 25-62 3-35 (74)
17 d2qam01 g.41.8.5 (0:1-56) Ribo 26.2 9.1 0.00066 22.3 0.7 24 24-57 25-48 (56)
18 d1y0jb1 g.37.1.2 (B:1-36) U-sh 26.1 2.2 0.00016 23.1 -2.0 11 48-58 8-18 (36)
19 d1kb2a_ g.39.1.2 (A:) Vitamin 25.7 15 0.0011 23.0 1.7 32 27-63 1-32 (89)
20 d1wjva1 g.37.1.2 (A:1-35) Cell 24.7 4.2 0.0003 22.0 -1.0 11 50-60 12-22 (35)
21 d1dszb_ g.39.1.2 (B:) Retinoid 22.4 19 0.0014 22.3 1.7 35 24-63 3-37 (84)
22 d1zina2 g.41.2.1 (A:126-160) M 20.4 10 0.00073 20.2 0.0 27 27-55 3-29 (35)
23 d2ds5a1 g.39.1.11 (A:11-48) Cl 20.1 16 0.0012 19.8 0.8 28 27-56 2-31 (38)
No 1
>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=99.86 E-value=4.1e-23 Score=136.14 Aligned_cols=60 Identities=38% Similarity=0.719 Sum_probs=54.7
Q ss_pred CCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhccccccCCCcchhhhhhhccCCCC
Q 033001 25 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGRDKGRAQKRKRKYSSNN 85 (129)
Q Consensus 25 ~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~~~rp~~~~k~~~~~r~rk~~~~~ 85 (129)
....|+||+|++||+||+||.| .+|||||||||+++++.||+.+.++.|++++++....+
T Consensus 3 ~g~~C~nCgt~~Tp~WRr~~~G-~~lCNACGl~~~~~~~~RP~~~~~~~i~~r~r~~~~~~ 62 (66)
T d3gata_ 3 AGTVCSNCQTSTTTLWRRSPMG-DPVCNACGLYYKLHQVNRPLTMRKDGIQTRNRKVSSKG 62 (66)
T ss_dssp TTCCCTTTCCCCCSSEEECTTS-CEEEHHHHHHHHHHCSCCCGGGCCSSCCCCSCCCCCCC
T ss_pred CCCCCCCCCCCCCcccccCCCC-CcccchhHHHHHHhCCcCCccccccccccccCCCCCcc
Confidence 4568999999999999999999 79999999999999999999999999999888876443
No 2
>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}
Probab=99.85 E-value=1.7e-22 Score=122.60 Aligned_cols=41 Identities=41% Similarity=0.933 Sum_probs=39.4
Q ss_pred ccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhccccccCC
Q 033001 28 SCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGR 69 (129)
Q Consensus 28 ~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~~~rp~~~ 69 (129)
.|+||++++||+||+||+| ++|||||||||++|++.||++|
T Consensus 2 ~C~nC~tt~Tp~WRr~~~G-~~lCNACGl~~k~~g~~RP~sl 42 (42)
T d2vuti1 2 TCTNCFTQTTPLWRRNPEG-QPLCNACGLFLKLHGVVRPLSL 42 (42)
T ss_dssp CCSSSCCCCCSCCEECTTS-CEECHHHHHHHHHHSSCCCCCC
T ss_pred cCCCCCCCCCccceeCCCC-CCchhhhhHHHHHcCCCCCCCC
Confidence 6999999999999999999 7999999999999999999875
No 3
>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.79 E-value=1.2e-20 Score=112.81 Aligned_cols=38 Identities=39% Similarity=0.937 Sum_probs=35.5
Q ss_pred CcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhccc
Q 033001 26 NKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKL 64 (129)
Q Consensus 26 ~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~~~ 64 (129)
.+.|+||++++||+||+||+| ++|||||||||+.|+++
T Consensus 2 ~r~C~~Cgtt~Tp~WR~gp~G-~~LCNACGl~~r~~G~n 39 (39)
T d1y0ja1 2 ARECVNCGATATPLWRRDRTG-HYLCNACGLYHKMNGQN 39 (39)
T ss_dssp CCCCSSSCCCCCSCCEECTTS-CEECSSHHHHHHHSCCC
T ss_pred cCCCCCCCCCCCcccccCCCC-CEeeHHhHHHHHHhCCC
Confidence 578999999999999999999 79999999999999874
No 4
>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=89.15 E-value=0.037 Score=31.17 Aligned_cols=28 Identities=32% Similarity=0.714 Sum_probs=22.3
Q ss_pred ccccCCCCCCCcccCCCCCCCCcchHHHH
Q 033001 28 SCIDCHTTRTPLWRGGPAGPRSLCNACGI 56 (129)
Q Consensus 28 ~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl 56 (129)
.|..|+.+.|-+-+.+..- -.-|+|||-
T Consensus 3 ~C~~C~spDT~l~ke~R~~-~l~C~aCGa 30 (37)
T d1neea2 3 ICHECNRPDTRIIREGRIS-LLKCEACGA 30 (37)
T ss_dssp HHTCCSSCSSCCEEETTTT-EEECSTTSC
T ss_pred ECCCCCCCCCEEEEcCCEE-EEEeccCCC
Confidence 5999999999998876433 346999995
No 5
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=87.91 E-value=0.19 Score=34.02 Aligned_cols=45 Identities=27% Similarity=0.474 Sum_probs=36.3
Q ss_pred CCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhc----cccccCCCc
Q 033001 25 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTK----KLALLGRDK 71 (129)
Q Consensus 25 ~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~----~~rp~~~~k 71 (129)
....|++|++. -|.|-.-.-| -.+|-.|.--.|..+ +-+.+.|+.
T Consensus 14 ~N~~CaDC~~~-~p~w~s~n~G-vfvC~~CsgiHR~lg~~is~VkS~~ld~ 62 (122)
T d1dcqa2 14 GNDVCCDCGAP-DPTWLSTNLG-ILTCIECSGIHRELGVHYSRMQSLTLDV 62 (122)
T ss_dssp TTTBCTTTCCB-SCCEEETTTT-EEECHHHHHHHHHHCTTTCCEEETTTSC
T ss_pred CCCccCCCCCC-CCCeEEecCC-EEEchhhhHHHhcCCCCceEeeecccCC
Confidence 45799999977 5899999999 899999987777776 446666665
No 6
>d1k81a_ g.59.1.1 (A:) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=83.46 E-value=0.036 Score=31.04 Aligned_cols=28 Identities=29% Similarity=0.617 Sum_probs=21.8
Q ss_pred ccccCCCCCCCcccCCCCCCCCcchHHHH
Q 033001 28 SCIDCHTTRTPLWRGGPAGPRSLCNACGI 56 (129)
Q Consensus 28 ~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl 56 (129)
.|..|+.+.|-+-+.+.-- -.-|+|||-
T Consensus 2 ~C~~C~spDT~l~ke~R~~-~l~C~aCGa 29 (36)
T d1k81a_ 2 ICRECGKPDTKIIKEGRVH-LLKCMACGA 29 (36)
T ss_dssp CCSSSCSCEEEEEEETTEE-EEEEETTTE
T ss_pred CCCCCCCCCCEEEEcCCEE-EEEeccCCC
Confidence 5999999999998875433 345999994
No 7
>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=75.72 E-value=0.19 Score=29.43 Aligned_cols=28 Identities=29% Similarity=0.701 Sum_probs=16.8
Q ss_pred CcccccCCCCCCCcccCCCCCCCCcchHHHH
Q 033001 26 NKSCIDCHTTRTPLWRGGPAGPRSLCNACGI 56 (129)
Q Consensus 26 ~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl 56 (129)
...|.+|+.+. +=.....| ..+|..||+
T Consensus 5 ~~~Cp~Cgs~~--iv~D~~~G-e~vC~~CG~ 32 (50)
T d1pfta_ 5 QKVCPACESAE--LIYDPERG-EIVCAKCGY 32 (50)
T ss_dssp CCSCTTTSCCC--EEEETTTT-EEEESSSCC
T ss_pred cccCcCCCCCc--EEEECCCC-eEecccCCc
Confidence 45688887543 22233445 677888876
No 8
>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=72.46 E-value=0.65 Score=27.82 Aligned_cols=30 Identities=20% Similarity=0.429 Sum_probs=18.3
Q ss_pred CCCcccccCCCCCCCcccCCCCCCCCcchHHHH
Q 033001 24 EMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGI 56 (129)
Q Consensus 24 ~~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl 56 (129)
.....|.+|+.+. -. -....| .++|..||+
T Consensus 9 ~~~~~Cp~Cgs~~-ii-~D~~~G-e~vC~~CG~ 38 (58)
T d1dl6a_ 9 LPRVTCPNHPDAI-LV-EDYRAG-DMICPECGL 38 (58)
T ss_dssp CSCCSBTTBSSSC-CE-ECSSSC-CEECTTTCC
T ss_pred ccccCCCCCCCCC-EE-EECCCC-cEecccCCC
Confidence 3456788888653 11 223356 678888886
No 9
>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=56.06 E-value=0.66 Score=27.17 Aligned_cols=19 Identities=32% Similarity=0.966 Sum_probs=15.5
Q ss_pred CCCCCCCcchHHHHHHHHh
Q 033001 43 GPAGPRSLCNACGIRYRKT 61 (129)
Q Consensus 43 gp~G~~~LCNaCGl~~~k~ 61 (129)
||+||..-|+-|+..|-..
T Consensus 1 g~~gp~~eC~lC~vKYs~~ 19 (48)
T d2yrka1 1 GTDGTKPECTLCGVKYSAR 19 (48)
T ss_dssp CCCCCCSCCTTTTCCCCSS
T ss_pred CCCCCcccCcccceeeeee
Confidence 6889999999999866543
No 10
>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=48.37 E-value=2.4 Score=28.50 Aligned_cols=28 Identities=21% Similarity=0.561 Sum_probs=20.5
Q ss_pred CcccccCCCCCCCcccCCCCCCCCcchHHH
Q 033001 26 NKSCIDCHTTRTPLWRGGPAGPRSLCNACG 55 (129)
Q Consensus 26 ~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCG 55 (129)
...|..|+.... .|=.-..| ..+|..|+
T Consensus 70 l~~C~~cg~~~~-~~f~~~~G-g~~C~~c~ 97 (157)
T d1u5ka2 70 TARCARCGAPDP-EHPDPLGG-QLLCSKCA 97 (157)
T ss_dssp CSBCTTTCCBSC-CEECTTTS-SEECTTTC
T ss_pred hhhHhcCCCCCC-CcccccCC-eeECCCCC
Confidence 467999997654 45455566 78999995
No 11
>d2j0151 g.41.8.5 (5:2-60) Ribosomal protein L32p {Thermus thermophilus [TaxId: 274]}
Probab=45.10 E-value=2.7 Score=25.08 Aligned_cols=25 Identities=24% Similarity=0.784 Sum_probs=18.1
Q ss_pred CCCcccccCCCCCCCcccCCCCCCCCcchHHHHH
Q 033001 24 EMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIR 57 (129)
Q Consensus 24 ~~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~ 57 (129)
.....|.+||...- ++.+|..||.|
T Consensus 27 p~l~~C~~CG~~~~---------pHrvC~~CG~Y 51 (59)
T d2j0151 27 PTLVPCPECKAMKP---------PHTVCPECGYY 51 (59)
T ss_dssp CCCBCCSSSSSCBC---------TTCBCTTTCCS
T ss_pred CceeECCCCCCccc---------ceeECCCCCeE
Confidence 34678999997433 35799999953
No 12
>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=41.72 E-value=4.8 Score=25.01 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=27.6
Q ss_pred CCCCcccccCCCCCCCcccCCCCCCCCcchHHHH
Q 033001 23 NEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGI 56 (129)
Q Consensus 23 ~~~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl 56 (129)
.....+|..|++---|--+=...|....||-|+.
T Consensus 10 ~~~i~RC~~C~ayiNP~~~~~~~g~~w~C~~C~~ 43 (85)
T d1pd0a5 10 DGLIVRCRRCRSYMNPFVTFIEQGRRWRCNFCRL 43 (85)
T ss_dssp SCCCCBCSSSCCBCCTTCEEETTTTEEECTTTCC
T ss_pred CCCCccccCCcCEECCceEEeCCCCEEECCCCCc
Confidence 3457889999999988866666776789999985
No 13
>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=40.80 E-value=1.5 Score=27.24 Aligned_cols=38 Identities=18% Similarity=0.545 Sum_probs=26.3
Q ss_pred CcccccCCCCCCCcc----cCCCCCCC--CcchHHHHHHHHhcc
Q 033001 26 NKSCIDCHTTRTPLW----RGGPAGPR--SLCNACGIRYRKTKK 63 (129)
Q Consensus 26 ~~~C~~C~tt~Tp~W----Rrgp~G~~--~LCNaCGl~~~k~~~ 63 (129)
...|..|+-.+.-.| |+..++-- +.|..||-.|+..++
T Consensus 23 ~~~CpkCg~~~a~~~q~QtRsaDE~mT~Fy~C~~C~h~Wr~~~~ 66 (72)
T d1twfi2 23 DRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQK 66 (72)
T ss_dssp CCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECCTT
T ss_pred CCCCCCCCCCeEEEEEeecCccCCCceEEEEcCCCCCCcccccc
Confidence 578999998775443 66655522 479999988876443
No 14
>d2zjrz1 g.41.8.5 (Z:2-59) Ribosomal protein L32p {Deinococcus radiodurans [TaxId: 1299]}
Probab=34.91 E-value=2.7 Score=25.00 Aligned_cols=25 Identities=24% Similarity=0.691 Sum_probs=18.3
Q ss_pred CCCcccccCCCCCCCcccCCCCCCCCcchHHHHH
Q 033001 24 EMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIR 57 (129)
Q Consensus 24 ~~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~ 57 (129)
.....|.+||...-| +.+|..||.|
T Consensus 27 p~l~~C~~CG~~~lp---------HrvC~~CG~Y 51 (58)
T d2zjrz1 27 PNLTECPQCHGKKLS---------HHICPNCGYY 51 (58)
T ss_dssp CCCEECTTTCCEECT---------TBCCTTTCBS
T ss_pred CceeECCCCCCCccc---------eeeCCCCCcC
Confidence 356789999975433 5699999954
No 15
>d1lo1a_ g.39.1.2 (A:) Steroid hormone receptor Err2 DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.57 E-value=8.2 Score=24.38 Aligned_cols=32 Identities=22% Similarity=0.563 Sum_probs=24.0
Q ss_pred CcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhc
Q 033001 26 NKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTK 62 (129)
Q Consensus 26 ~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~ 62 (129)
.+.|.-|+...+-. ..| ...|+||..+|+..-
T Consensus 4 ~~~C~VCg~~~~~~----hyG-~~sC~aC~~FFRR~v 35 (90)
T d1lo1a_ 4 KRLCLVCGDIASGY----HYG-VASCEACKAFFKRTI 35 (90)
T ss_dssp CCEETTTTEECSEE----SSS-SEECHHHHHHHHHHH
T ss_pred CCcCCcCCCcCCce----EcC-eeechhhHHHHHHHH
Confidence 46799999876522 356 678999999999753
No 16
>d1hcqa_ g.39.1.2 (A:) Estrogen receptor DNA-binding domain {Human and chicken (Homo sapiens) and (Gallus gallus) [TaxId: 9606]}
Probab=32.56 E-value=9.3 Score=23.23 Aligned_cols=33 Identities=15% Similarity=0.388 Sum_probs=24.0
Q ss_pred CCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhc
Q 033001 25 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTK 62 (129)
Q Consensus 25 ~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~ 62 (129)
..+.|.-|+...+- -..| ...|+||..++++.-
T Consensus 3 ~~~~C~VCg~~a~g----~hyG-v~sC~aC~~FFRR~v 35 (74)
T d1hcqa_ 3 ETRYCAVCNDYASG----YHYG-VWSCEGCKAFFKRSI 35 (74)
T ss_dssp CCCBCTTTCSBCCE----EETT-EEECHHHHHHHHHHH
T ss_pred CCCCCccCCCcCCc----eEcC-eeehHHHHHHHHHHH
Confidence 45679999976542 2245 678999999998763
No 17
>d2qam01 g.41.8.5 (0:1-56) Ribosomal protein L32p {Escherichia coli [TaxId: 562]}
Probab=26.22 E-value=9.1 Score=22.32 Aligned_cols=24 Identities=4% Similarity=-0.140 Sum_probs=17.3
Q ss_pred CCCcccccCCCCCCCcccCCCCCCCCcchHHHHH
Q 033001 24 EMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIR 57 (129)
Q Consensus 24 ~~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~ 57 (129)
.....|.+||...-| +.+|. ||.|
T Consensus 25 ~~~~~c~~CG~~~lp---------H~vC~-cG~Y 48 (56)
T d2qam01 25 TSLSVDKTSGEKHLR---------HHITA-DGYY 48 (56)
T ss_dssp SCCEECSSSCCEECT---------TSCCT-TSCC
T ss_pred CceeECCCCCCCccC---------cEECC-CCCC
Confidence 456678999977654 56895 9954
No 18
>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=26.13 E-value=2.2 Score=23.08 Aligned_cols=11 Identities=45% Similarity=1.213 Sum_probs=8.7
Q ss_pred CCcchHHHHHH
Q 033001 48 RSLCNACGIRY 58 (129)
Q Consensus 48 ~~LCNaCGl~~ 58 (129)
...|+.||+++
T Consensus 8 rf~c~pcgirf 18 (36)
T d1y0jb1 8 RFMCLPCGIAF 18 (36)
T ss_dssp CCBCTTTCCBC
T ss_pred ceeccccceee
Confidence 46899999854
No 19
>d1kb2a_ g.39.1.2 (A:) Vitamin D3 receptor, VDR, DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.68 E-value=15 Score=23.00 Aligned_cols=32 Identities=22% Similarity=0.442 Sum_probs=22.5
Q ss_pred cccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhcc
Q 033001 27 KSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKK 63 (129)
Q Consensus 27 ~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~~ 63 (129)
+.|.-|+...+-. ..| ...|+||-.+++..-.
T Consensus 1 r~C~VCg~~a~g~----hyG-v~sC~aC~~FFRR~v~ 32 (89)
T d1kb2a_ 1 RICGVCGDRATGF----HFN-AMTCEGCKGFFRRSMK 32 (89)
T ss_dssp CBCTTTCSBCCSE----ETT-EECCHHHHHHHHHHHH
T ss_pred CCCeeCCCcCCcc----CCC-HHHHHHHHHHHHHHHh
Confidence 4688898654421 245 5789999999998644
No 20
>d1wjva1 g.37.1.2 (A:1-35) Cell growth regulating nucleolar protein LyaR {Mouse (Mus musculus) [TaxId: 10090]}
Probab=24.75 E-value=4.2 Score=21.99 Aligned_cols=11 Identities=55% Similarity=1.102 Sum_probs=7.5
Q ss_pred cchHHHHHHHH
Q 033001 50 LCNACGIRYRK 60 (129)
Q Consensus 50 LCNaCGl~~~k 60 (129)
-||+||--.+|
T Consensus 12 tCn~CGEs~KK 22 (35)
T d1wjva1 12 TCNACGESVKK 22 (35)
T ss_dssp EESSSCCEEET
T ss_pred EcchhHHHHhH
Confidence 49999864433
No 21
>d1dszb_ g.39.1.2 (B:) Retinoid X receptor (RXR-alpha) DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.44 E-value=19 Score=22.29 Aligned_cols=35 Identities=17% Similarity=0.348 Sum_probs=25.2
Q ss_pred CCCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhcc
Q 033001 24 EMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKK 63 (129)
Q Consensus 24 ~~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~~ 63 (129)
.....|.-|+...+-. -.| ...|+||..++++.-.
T Consensus 3 ~~~~~C~VC~~~a~g~----hyG-v~sC~aCk~FFRR~v~ 37 (84)
T d1dszb_ 3 FTKHICAICGDRSSGK----HYG-VYSCEGCKGFFKRTVR 37 (84)
T ss_dssp SCCEECTTTCCEESSE----ETT-EECCHHHHHHHHHHHH
T ss_pred CCCCcCccCCCcCCcc----CCC-HHHHHHhHHHHHHHHh
Confidence 4567899998764432 256 6789999999987643
No 22
>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=20.42 E-value=10 Score=20.15 Aligned_cols=27 Identities=30% Similarity=0.839 Sum_probs=14.4
Q ss_pred cccccCCCCCCCcccCCCCCCCCcchHHH
Q 033001 27 KSCIDCHTTRTPLWRGGPAGPRSLCNACG 55 (129)
Q Consensus 27 ~~C~~C~tt~Tp~WRrgp~G~~~LCNaCG 55 (129)
++|.+||..-=-.+.. |.- .-.|+.||
T Consensus 3 r~C~~CG~~Yh~~~~p-Pk~-~g~CD~cG 29 (35)
T d1zina2 3 RICRNCGATYHLIFHP-PAK-PGVCDKCG 29 (35)
T ss_dssp EEETTTCCEEETTTBC-CSS-TTBCTTTC
T ss_pred cCCcCcCchhccccCC-CCC-CCcCCCCC
Confidence 5788888753222221 111 23788776
No 23
>d2ds5a1 g.39.1.11 (A:11-48) ClpX chaperone zinc binding domain {Escherichia coli [TaxId: 562]}
Probab=20.15 E-value=16 Score=19.75 Aligned_cols=28 Identities=21% Similarity=0.538 Sum_probs=19.4
Q ss_pred cccccCCCCCCCc--ccCCCCCCCCcchHHHH
Q 033001 27 KSCIDCHTTRTPL--WRGGPAGPRSLCNACGI 56 (129)
Q Consensus 27 ~~C~~C~tt~Tp~--WRrgp~G~~~LCNaCGl 56 (129)
..|+-||.+++-. -=.||+ ...||.|--
T Consensus 2 l~CSFCgk~~~eV~~LI~G~~--~~ICd~CV~ 31 (38)
T d2ds5a1 2 LYCSFCGKSQHEVRKLIAGPS--VYICDECVD 31 (38)
T ss_dssp CBCTTTCCBTTTSSCEEECSS--CEEEHHHHH
T ss_pred cEeeCCCCCHHHHHHHhcCCC--CEEcHHHHH
Confidence 4799999987543 223553 479999964
Done!