Query 033003
Match_columns 129
No_of_seqs 110 out of 272
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 08:36:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033003.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033003hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05529 Bap31: B-cell recepto 100.0 6.1E-39 1.3E-43 243.6 16.7 128 1-128 1-139 (192)
2 KOG1962 B-cell receptor-associ 100.0 3.1E-31 6.7E-36 205.0 16.7 119 4-122 1-129 (216)
3 COG5374 Uncharacterized conser 100.0 6.5E-31 1.4E-35 197.4 15.5 122 1-122 1-133 (192)
4 PF10883 DUF2681: Protein of u 71.6 15 0.00032 24.9 5.2 37 92-128 3-44 (87)
5 KOG2927 Membrane component of 71.4 8.2 0.00018 32.6 4.7 23 15-37 198-221 (372)
6 PF10784 Plasmid_stab_B: Plasm 52.4 13 0.00029 24.3 2.2 16 86-101 30-45 (72)
7 KOG1292 Xanthine/uracil transp 43.2 13 0.00027 32.8 1.2 27 82-108 398-424 (510)
8 TIGR00869 sec62 protein transl 40.4 1.7E+02 0.0036 23.3 7.1 23 14-36 126-149 (232)
9 PF04977 DivIC: Septum formati 38.7 49 0.0011 20.6 3.3 24 105-128 15-38 (80)
10 PF11395 DUF2873: Protein of u 34.7 95 0.0021 17.9 3.9 30 92-121 8-39 (43)
11 PRK14750 kdpF potassium-transp 34.5 60 0.0013 17.6 2.6 21 94-114 5-25 (29)
12 PF06459 RR_TM4-6: Ryanodine R 34.2 40 0.00086 27.4 2.7 20 90-109 167-187 (274)
13 PF03839 Sec62: Translocation 34.1 1.9E+02 0.0041 22.8 6.4 20 16-35 120-140 (224)
14 PF05511 ATP-synt_F6: Mitochon 33.3 1.1E+02 0.0024 21.2 4.4 37 55-91 40-79 (99)
15 PF09726 Macoilin: Transmembra 29.7 2.2E+02 0.0047 26.2 6.9 60 2-61 72-137 (697)
16 KOG3609 Receptor-activated Ca2 29.2 5E+02 0.011 24.6 10.0 38 8-45 317-357 (822)
17 PF01124 MAPEG: MAPEG family; 29.0 1.1E+02 0.0023 20.5 3.9 16 79-94 44-59 (129)
18 PF06305 DUF1049: Protein of u 28.1 1.4E+02 0.0031 18.0 5.4 18 110-127 44-61 (68)
19 PF01102 Glycophorin_A: Glycop 28.1 49 0.0011 23.7 2.1 16 96-111 78-93 (122)
20 COG5415 Predicted integral mem 27.7 1.8E+02 0.0038 23.2 5.2 36 93-128 75-121 (251)
21 PF01352 KRAB: KRAB box; Inte 26.6 34 0.00073 19.7 0.8 10 86-95 18-27 (41)
22 PF15190 DUF4583: Domain of un 26.5 89 0.0019 22.6 3.1 25 4-28 69-94 (128)
23 PF11241 DUF3043: Protein of u 25.8 3E+02 0.0064 20.9 6.3 11 51-61 111-121 (170)
24 PF10625 UspB: Universal stres 25.2 2E+02 0.0044 20.2 4.6 34 95-128 2-35 (107)
25 COG4988 CydD ABC-type transpor 24.9 4.5E+02 0.0097 23.7 7.8 42 14-61 140-187 (559)
26 TIGR02209 ftsL_broad cell divi 23.9 2E+02 0.0043 18.2 5.3 16 111-126 28-43 (85)
27 PF11026 DUF2721: Protein of u 23.8 2.3E+02 0.005 20.0 4.9 33 93-125 7-39 (130)
28 PF15220 HILPDA: Hypoxia-induc 23.6 2E+02 0.0043 18.0 4.2 24 91-114 5-28 (63)
29 COG5232 SEC62 Preprotein trans 23.3 58 0.0012 26.0 1.8 20 16-35 160-180 (259)
30 PRK06231 F0F1 ATP synthase sub 22.4 3.1E+02 0.0066 20.9 5.7 19 24-42 30-48 (205)
31 PRK00888 ftsB cell division pr 21.5 2.7E+02 0.0058 19.1 4.7 20 108-127 28-47 (105)
32 PF04999 FtsL: Cell division p 20.8 2.6E+02 0.0056 18.3 4.9 17 111-127 39-55 (97)
No 1
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=100.00 E-value=6.1e-39 Score=243.60 Aligned_cols=128 Identities=23% Similarity=0.319 Sum_probs=109.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH-----HhHHHHHHHHH-HHHHHHHHHHH---Hhhhhhccc-
Q 033003 1 MALQWLILAYAVAAEAAIAILLTIPSPKLLKNRLVSLVS-----LILQPALFIVP-FAGFQLLDIYW---KSEHRLMCT- 70 (129)
Q Consensus 1 MsL~~~lv~~~L~~E~~~~~lL~lPlP~~~r~~l~~~~~-----~~~~~~~~il~-~~~llF~Da~~---ky~~~~~~~- 70 (129)
|||||++||++|++||+++++||+|+|+.+|++++++.. ..+++++.+++ +++++|+||+| ||++..+..
T Consensus 1 Msl~~~lvf~~L~~Ei~~~~lL~lPlp~~~R~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lf~ds~~~~~k~~~~~~~~~ 80 (192)
T PF05529_consen 1 MSLQWSLVFGLLYAEIAVLLLLVLPLPSPIRRKIFKFLDKSFFSGKFKTVFKILLAILLLLFLDSIRRMYKYSSEYEEAK 80 (192)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 999999999999999999999999999999999998874 34577887777 88999999999 455443322
Q ss_pred cccCChh-HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033003 71 SEICTAA-ERDRYEKSIYKAQRNVILCAAACLLYWSIFRICKYYKDVQRLEEVEKRYKE 128 (129)
Q Consensus 71 ~~~~~~~-~~~~~~~~~fraQRN~YisGf~LfL~l~i~R~~~li~~l~~l~~~~~~~k~ 128 (129)
+++.+++ ++++.++|+||||||+|||||+|||+++|+|+++++.++.+++++.++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~fraQRN~YIsGf~LfL~l~I~r~~~li~~l~~~~~~~~~~~k 139 (192)
T PF05529_consen 81 DDHPNPDRTEDQVLAKKFRAQRNMYISGFALFLSLVIRRVHSLIKELIKLEEKLEALKK 139 (192)
T ss_pred ccCCCccchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222333 688899999999999999999999999999999999999999999998775
No 2
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=99.98 E-value=3.1e-31 Score=204.99 Aligned_cols=119 Identities=14% Similarity=0.205 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-----HHhHHHHHHHHH-HHHHHHHHHHHH---hhhh-hcccccc
Q 033003 4 QWLILAYAVAAEAAIAILLTIPSPKLLKNRLVSLV-----SLILQPALFIVP-FAGFQLLDIYWK---SEHR-LMCTSEI 73 (129)
Q Consensus 4 ~~~lv~~~L~~E~~~~~lL~lPlP~~~r~~l~~~~-----~~~~~~~~~il~-~~~llF~Da~~k---y~~~-~~~~~~~ 73 (129)
||++||++|++||+++++||+|+|.+.|++++... .+.++.++.++. +++++|+||+++ |+.. ....++.
T Consensus 1 ~~tlvf~iL~~Eial~~iL~Lpip~r~~~~~~~~~~~~~~~~~~~~~i~~~~~villlfiDsvr~i~~~~~~~~~~~n~~ 80 (216)
T KOG1962|consen 1 YWTLVFTILYAEIALFLILLLPIPPRRRRKIFKDRLKSGLAPQVLKTIATTMIVILLLFIDSVRRIQKYVSEYGSMANPT 80 (216)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCc
Confidence 79999999999999999999999988888887765 346677776666 889999999983 4332 2233456
Q ss_pred CChhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033003 74 CTAAERDRYEKSIYKAQRNVILCAAACLLYWSIFRICKYYKDVQRLEEV 122 (129)
Q Consensus 74 ~~~~~~~~~~~~~fraQRN~YisGf~LfL~l~i~R~~~li~~l~~l~~~ 122 (129)
.+|..+.+++++.||||||.|||||+|||++||+|+++++.+++++++.
T Consensus 81 ~~~~a~~~~~~~l~raqrn~YisGf~LFL~lvI~R~~~ll~~l~~l~~~ 129 (216)
T KOG1962|consen 81 DQPLARTHLLEALFRAQRNLYISGFVLFLSLVIRRLHTLLRELATLRAN 129 (216)
T ss_pred cchHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7888999999999999999999999999999999999999999999984
No 3
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=6.5e-31 Score=197.43 Aligned_cols=122 Identities=21% Similarity=0.233 Sum_probs=102.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH-----HhHHHHHHHHH-HHHHHHHHHHHH-hhhhhc----c
Q 033003 1 MALQWLILAYAVAAEAAIAILLTIPSPKLLKNRLVSLVS-----LILQPALFIVP-FAGFQLLDIYWK-SEHRLM----C 69 (129)
Q Consensus 1 MsL~~~lv~~~L~~E~~~~~lL~lPlP~~~r~~l~~~~~-----~~~~~~~~il~-~~~llF~Da~~k-y~~~~~----~ 69 (129)
||+||++||.+|++||++++++++|+|++.||++.+.++ ..++.+..++. ++++||+||+++ |....+ .
T Consensus 1 M~iy~~lvfslL~vEm~~f~il~LPlp~r~RR~l~~~~~~~~~~~~~k~il~i~~~~IllLFiDS~~Rv~rv~~~~nl~~ 80 (192)
T COG5374 1 MGIYYTLVFSLLVVEMVMFFILVLPLPKRLRRSLMKLYSTSKVYRGFKHILKITFIFILLLFIDSWKRVYRVSKEANLYS 80 (192)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhcc
Confidence 999999999999999999999999999999999999885 35566776666 999999999773 322111 1
Q ss_pred ccccCChhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033003 70 TSEICTAAERDRYEKSIYKAQRNVILCAAACLLYWSIFRICKYYKDVQRLEEV 122 (129)
Q Consensus 70 ~~~~~~~~~~~~~~~~~fraQRN~YisGf~LfL~l~i~R~~~li~~l~~l~~~ 122 (129)
.+......++.+..+|+|++|||||+||++|||++|+.|+++++.++.+.++.
T Consensus 81 a~~n~~~~~~i~~las~fy~qrnmyl~g~~L~l~~~v~~~~~~v~~ml~~~~~ 133 (192)
T COG5374 81 ASINNYAVTRIAVLASRFYAQRNMYLSGSALFLSIVVMRVMSIVEEMLEENAK 133 (192)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 12233467788899999999999999999999999999999999999888833
No 4
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=71.63 E-value=15 Score=24.90 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=23.6
Q ss_pred HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033003 92 NVILCA-----AACLLYWSIFRICKYYKDVQRLEEVEKRYKE 128 (129)
Q Consensus 92 N~YisG-----f~LfL~l~i~R~~~li~~l~~l~~~~~~~k~ 128 (129)
|+||.| +++.+.++.+++-+.-++.++|+++.++++.
T Consensus 3 ~l~iv~~~~~v~~~i~~y~~~k~~ka~~~~~kL~~en~qlk~ 44 (87)
T PF10883_consen 3 NLQIVGGVGAVVALILAYLWWKVKKAKKQNAKLQKENEQLKT 44 (87)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566642 2333444557777888888888887776663
No 5
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.44 E-value=8.2 Score=32.58 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=18.3
Q ss_pred HHHHHHHHHcCC-chHHHHHHHHH
Q 033003 15 EAAIAILLTIPS-PKLLKNRLVSL 37 (129)
Q Consensus 15 E~~~~~lL~lPl-P~~~r~~l~~~ 37 (129)
-.+++.+.++|+ |+..|++++-.
T Consensus 198 vl~tlaivLFPLWP~~mR~gvyY~ 221 (372)
T KOG2927|consen 198 VLVTLAIVLFPLWPRRMRQGVYYL 221 (372)
T ss_pred HHHHHHHHhcccCcHHHhcceeee
Confidence 456778889997 99999987543
No 6
>PF10784 Plasmid_stab_B: Plasmid stability protein; InterPro: IPR019720 This family is conserved in the Enterobacteriales. It is a putative plasmid stability protein in that it is expressed from the operon involved in stability, but its actual function has not yet been characterised but it may be involved in the control of plasmid partition.; PDB: 2JD3_A.
Probab=52.41 E-value=13 Score=24.27 Aligned_cols=16 Identities=19% Similarity=0.073 Sum_probs=13.0
Q ss_pred HHhHhhHHHHHHHHHH
Q 033003 86 IYKAQRNVILCAAACL 101 (129)
Q Consensus 86 ~fraQRN~YisGf~Lf 101 (129)
+=+.|||..|+|.+|.
T Consensus 30 Rgdf~R~aliaG~aL~ 45 (72)
T PF10784_consen 30 RGDFQRAALIAGLALH 45 (72)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4456999999999875
No 7
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=43.18 E-value=13 Score=32.80 Aligned_cols=27 Identities=19% Similarity=0.146 Sum_probs=21.5
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 033003 82 YEKSIYKAQRNVILCAAACLLYWSIFR 108 (129)
Q Consensus 82 ~~~~~fraQRN~YisGf~LfL~l~i~R 108 (129)
.|---.++=||++|-||++|+.+.+-.
T Consensus 398 LQf~dlns~RNl~IlG~Sif~gLsip~ 424 (510)
T KOG1292|consen 398 LQFVDLNSSRNLFILGFSIFLGLSIPQ 424 (510)
T ss_pred heeeccccccchhhhhHHHHHhccHHH
Confidence 344455678999999999999998843
No 8
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=40.42 E-value=1.7e+02 Score=23.30 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=18.0
Q ss_pred HHHHHHHHHHcCC-chHHHHHHHH
Q 033003 14 AEAAIAILLTIPS-PKLLKNRLVS 36 (129)
Q Consensus 14 ~E~~~~~lL~lPl-P~~~r~~l~~ 36 (129)
+-.+++.+.+.|+ |...|..++-
T Consensus 126 ~~~~ila~~lFPlWP~~~r~gv~Y 149 (232)
T TIGR00869 126 VVSIILALVLFPLWPRFMRRGSWY 149 (232)
T ss_pred HHHHHHHHhhcccChHHHhHhHHH
Confidence 3456778889997 9999998863
No 9
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=38.65 E-value=49 Score=20.56 Aligned_cols=24 Identities=13% Similarity=0.228 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 033003 105 SIFRICKYYKDVQRLEEVEKRYKE 128 (129)
Q Consensus 105 ~i~R~~~li~~l~~l~~~~~~~k~ 128 (129)
-+.+...+-.++.+++.+++++++
T Consensus 15 ~~~~~~~~~~ei~~l~~~i~~l~~ 38 (80)
T PF04977_consen 15 GYSRYYQLNQEIAELQKEIEELKK 38 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555566666666665553
No 10
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=34.71 E-value=95 Score=17.95 Aligned_cols=30 Identities=30% Similarity=0.513 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 033003 92 NVILCAAACLLYWSIFR--ICKYYKDVQRLEE 121 (129)
Q Consensus 92 N~YisGf~LfL~l~i~R--~~~li~~l~~l~~ 121 (129)
++|+|..++.+.+++-- +.-...|+..++|
T Consensus 8 dfylc~l~~llflv~imliif~f~le~qdl~e 39 (43)
T PF11395_consen 8 DFYLCFLSFLLFLVIIMLIIFWFSLEIQDLNE 39 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 57898877777666543 3344445555543
No 11
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=34.51 E-value=60 Score=17.56 Aligned_cols=21 Identities=19% Similarity=0.429 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033003 94 ILCAAACLLYWSIFRICKYYK 114 (129)
Q Consensus 94 YisGf~LfL~l~i~R~~~li~ 114 (129)
-|+|..|.+.+..+-+++++.
T Consensus 5 vi~g~llv~lLl~YLvYAL~n 25 (29)
T PRK14750 5 IVCGALLVLLLLGYLVYALFN 25 (29)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 479999999999999888764
No 12
>PF06459 RR_TM4-6: Ryanodine Receptor TM 4-6; InterPro: IPR009460 The release of Ca2+ ions from intracellular stores is a key step in a wide variety of cellular functions. In striated muscle, the release of Ca2+ from the sarcoplasmic reticulum (SR) leads to muscle contraction. Ca2+ release occurs through large, high-conductance Ca2+ release channels, also known as ryanodine receptors (RyRs) because they bind the plant alkaloid ryanodine with high affinity and specificity []. This region covers TM regions 4-6 of the ryanodine receptor 1 family.; GO: 0005219 ryanodine-sensitive calcium-release channel activity, 0006874 cellular calcium ion homeostasis, 0016021 integral to membrane
Probab=34.19 E-value=40 Score=27.36 Aligned_cols=20 Identities=35% Similarity=0.286 Sum_probs=15.5
Q ss_pred hhHHH-HHHHHHHHHHHHHHH
Q 033003 90 QRNVI-LCAAACLLYWSIFRI 109 (129)
Q Consensus 90 QRN~Y-isGf~LfL~l~i~R~ 109 (129)
=||+| +--.|||+.|+|+-+
T Consensus 167 ARNFYNlr~lALflAFaINFI 187 (274)
T PF06459_consen 167 ARNFYNLRFLALFLAFAINFI 187 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 68888 556789999998754
No 13
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=34.13 E-value=1.9e+02 Score=22.83 Aligned_cols=20 Identities=10% Similarity=0.403 Sum_probs=16.3
Q ss_pred HHHHHHHHcCC-chHHHHHHH
Q 033003 16 AAIAILLTIPS-PKLLKNRLV 35 (129)
Q Consensus 16 ~~~~~lL~lPl-P~~~r~~l~ 35 (129)
++++.+.+.|+ |..+|..++
T Consensus 120 ~~v~a~~lFPlWP~~~r~gv~ 140 (224)
T PF03839_consen 120 VGVIAICLFPLWPRWMRQGVY 140 (224)
T ss_pred HHHHHHHhhhcChHHHhheee
Confidence 45568889997 999998885
No 14
>PF05511 ATP-synt_F6: Mitochondrial ATP synthase coupling factor 6; InterPro: IPR008387 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit F6 (or coupling factor 6) found in the F0 complex of F-ATPases in mitochondria. The F6 subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit F6 in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2WSS_V 2CLY_C 1VZS_A.
Probab=33.31 E-value=1.1e+02 Score=21.24 Aligned_cols=37 Identities=11% Similarity=0.151 Sum_probs=20.2
Q ss_pred HHHHHHHHhhhhhccccc-c--CChhHHHHHHHHHHhHhh
Q 033003 55 QLLDIYWKSEHRLMCTSE-I--CTAAERDRYEKSIYKAQR 91 (129)
Q Consensus 55 lF~Da~~ky~~~~~~~~~-~--~~~~~~~~~~~~~fraQR 91 (129)
+|+|-+|.|+......+| . .+|..+.++.--.-|-||
T Consensus 40 lFldKIREY~~Ksks~gGklVD~~Pe~~kel~eel~kL~r 79 (99)
T PF05511_consen 40 LFLDKIREYNQKSKSSGGKLVDAGPEYEKELNEELEKLAR 79 (99)
T ss_dssp HHHHHHHHHHHHHTTTSS-STT--THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 799999999665433333 2 344444444444444444
No 15
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=29.73 E-value=2.2e+02 Score=26.18 Aligned_cols=60 Identities=15% Similarity=0.194 Sum_probs=35.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHhHH----HHHHHHH-HHHHHHHHHHH
Q 033003 2 ALQWLILAYAVAAEAAIAILLTIPSP-KLLKNRLVSLVSLILQ----PALFIVP-FAGFQLLDIYW 61 (129)
Q Consensus 2 sL~~~lv~~~L~~E~~~~~lL~lPlP-~~~r~~l~~~~~~~~~----~~~~il~-~~~llF~Da~~ 61 (129)
+|.++++|+.+.+-.=+++++++|.+ -.|--..+.|+.-.|. +++..+. .++++.+++-.
T Consensus 72 ~~~~~~~~~~~~~~~d~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 137 (697)
T PF09726_consen 72 GLAFSVFFVCIAFTSDLICLFFIPVHWLFFAASTYVWVQYVWHTDRGICLPTVSLWILFVYVEASV 137 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHH
Confidence 56788888888888888899999986 2232333444443333 3333333 44444555543
No 16
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=29.25 E-value=5e+02 Score=24.58 Aligned_cols=38 Identities=8% Similarity=0.120 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHcCCc---hHHHHHHHHHHHHhHHHH
Q 033003 8 LAYAVAAEAAIAILLTIPSP---KLLKNRLVSLVSLILQPA 45 (129)
Q Consensus 8 v~~~L~~E~~~~~lL~lPlP---~~~r~~l~~~~~~~~~~~ 45 (129)
.+..+..++.-+.-++.|-| +..|+++.+++.+.....
T Consensus 317 ~~~~~~~P~~~l~yllap~S~~G~~~r~PfmKFi~H~~Sy~ 357 (822)
T KOG3609|consen 317 RFLRLCFPMPSLVYLLAPMSRKGTTMRKPFMKFIAHITSYL 357 (822)
T ss_pred HHHHHHhHHHHHHHHhCCCCcccchhhchHHHHHHHHHHHH
Confidence 44556667777777777765 778999999998765543
No 17
>PF01124 MAPEG: MAPEG family; InterPro: IPR001129 This entry represents a widespread superfamily known as MAPEG (Membrane Associated Proteins in Eicosanoid and Glutathione metabolism) []. Included are: 5-lipoxygenase activating protein (gene FLAP), which seems to be required for the activation of 5-lipoxygenase. Leukotriene C4 synthase (2.5.1.37 from EC), which catalyses the production of LTC4 from LTA4. Microsomal glutathione S-transferase II (2.5.1.18 from EC) (GST-II), which also produces LTC4 from LTA4. Prostaglandin E synthase, which catalyses the synthesis of PGE2 from PGH2 (produced by cyclooxygenase from arachidonic acid). Because of structural similarities in the active sites of FLAP, LTC4 synthase and PGE synthase, substrates for each enzyme can compete with one another and modulate synthetic activity.; PDB: 3DWW_A 2Q7R_D 2Q7M_B 2PNO_J 3B29_A 3HKK_A 2UUI_A 3PCV_A 2UUH_A 3LEO_A ....
Probab=28.95 E-value=1.1e+02 Score=20.49 Aligned_cols=16 Identities=13% Similarity=0.221 Sum_probs=12.2
Q ss_pred HHHHHHHHHhHhhHHH
Q 033003 79 RDRYEKSIYKAQRNVI 94 (129)
Q Consensus 79 ~~~~~~~~fraQRN~Y 94 (129)
.++...|.-|||+|..
T Consensus 44 ~~~~~~R~~ra~~N~~ 59 (129)
T PF01124_consen 44 LPPWLERAQRAHQNFL 59 (129)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhhH
Confidence 4456678999999974
No 18
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=28.10 E-value=1.4e+02 Score=18.01 Aligned_cols=18 Identities=17% Similarity=0.355 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 033003 110 CKYYKDVQRLEEVEKRYK 127 (129)
Q Consensus 110 ~~li~~l~~l~~~~~~~k 127 (129)
...-.+..+++.+.++++
T Consensus 44 ~~~r~~~~~~~k~l~~le 61 (68)
T PF06305_consen 44 LRLRRRIRRLRKELKKLE 61 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444443
No 19
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=28.10 E-value=49 Score=23.69 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 033003 96 CAAACLLYWSIFRICK 111 (129)
Q Consensus 96 sGf~LfL~l~i~R~~~ 111 (129)
.|.+|+++++++|..+
T Consensus 78 Ig~Illi~y~irR~~K 93 (122)
T PF01102_consen 78 IGIILLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4567777888877543
No 20
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=27.74 E-value=1.8e+02 Score=23.22 Aligned_cols=36 Identities=17% Similarity=0.323 Sum_probs=20.7
Q ss_pred HHHHH-HHHHHH------HHHHHHHHHHHHHHHHHH----HHHhhhh
Q 033003 93 VILCA-AACLLY------WSIFRICKYYKDVQRLEE----VEKRYKE 128 (129)
Q Consensus 93 ~YisG-f~LfL~------l~i~R~~~li~~l~~l~~----~~~~~k~ 128 (129)
+|+.| ++||+. ++=.|.-.....++++.| +++.+|+
T Consensus 75 ~~llgs~slymfrwal~~lye~r~~r~~~~L~kLra~~rk~l~~LK~ 121 (251)
T COG5415 75 ALLLGSGSLYMFRWALTKLYEFRNNRRLRKLAKLRAIHRKKLEKLKE 121 (251)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence 67777 776653 333555566666666654 3445554
No 21
>PF01352 KRAB: KRAB box; InterPro: IPR001909 The Krueppel-associated box (KRAB) is a domain of around 75 amino acids that is found in the N-terminal part of about one third of eukaryotic Krueppel-type C2H2 zinc finger proteins (ZFPs) []. It is enriched in charged amino acids and can be divided into subregions A and B, which are predicted to fold into two amphipathic alpha-helices. The KRAB A and B boxes can be separated by variable spacer segments and many KRAB proteins contain only the A box []. The functions currently known for members of the KRAB-containing protein family include transcriptional repression of RNA polymerase I, II, and III promoters, binding and splicing of RNA, and control of nucleolus function. The KRAB domain functions as a transcriptional repressor when tethered to the template DNA by a DNA-binding domain. A sequence of 45 amino acids in the KRAB A subdomain has been shown to be necessary and sufficient for transcriptional repression. The B box does not repress by itself but does potentiate the repression exerted by the KRAB A subdomain [, ]. Gene silencing requires the binding of the KRAB domain to the RING-B box-coiled coil (RBCC) domain of the KAP-1/TIF1-beta corepressor. As KAP-1 binds to the heterochromatin proteins HP1, it has been proposed that the KRAB-ZFP-bound target gene could be silenced following recruitment to heterochromatin [, ]. KRAB-ZFPs probably constitute the single largest class of transcription factors within the human genome []. Although the function of KRAB-ZFPs is largely unknown, they appear to play important roles during cell differentiation and development. The KRAB domain is generally encoded by two exons. The regions coded by the two exons are known as KRAB-A and KRAB-B.; GO: 0003676 nucleic acid binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1V65_A.
Probab=26.55 E-value=34 Score=19.69 Aligned_cols=10 Identities=30% Similarity=0.331 Sum_probs=6.6
Q ss_pred HHhHhhHHHH
Q 033003 86 IYKAQRNVIL 95 (129)
Q Consensus 86 ~fraQRN~Yi 95 (129)
+--+|||+|=
T Consensus 18 L~~~Qk~ly~ 27 (41)
T PF01352_consen 18 LDPAQKNLYR 27 (41)
T ss_dssp S-HHHHHHHH
T ss_pred ccceecccch
Confidence 4457999884
No 22
>PF15190 DUF4583: Domain of unknown function (DUF4583)
Probab=26.51 E-value=89 Score=22.63 Aligned_cols=25 Identities=8% Similarity=0.238 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCC-ch
Q 033003 4 QWLILAYAVAAEAAIAILLTIPS-PK 28 (129)
Q Consensus 4 ~~~lv~~~L~~E~~~~~lL~lPl-P~ 28 (129)
.|.++|++.|.++..++.-|--- |+
T Consensus 69 ~wa~ifllPYLQ~FlfL~sCTR~DP~ 94 (128)
T PF15190_consen 69 MWALIFLLPYLQLFLFLYSCTRADPR 94 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCch
Confidence 48999999999999887766544 54
No 23
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=25.80 E-value=3e+02 Score=20.85 Aligned_cols=11 Identities=9% Similarity=-0.004 Sum_probs=7.2
Q ss_pred HHHHHHHHHHH
Q 033003 51 FAGFQLLDIYW 61 (129)
Q Consensus 51 ~~~llF~Da~~ 61 (129)
++++..+|++.
T Consensus 111 ~~~~~iid~~~ 121 (170)
T PF11241_consen 111 LLLLVIIDGVI 121 (170)
T ss_pred HHHHHHHHHHH
Confidence 33455789977
No 24
>PF10625 UspB: Universal stress protein B (UspB); InterPro: IPR019598 Universal stress protein B (UspB) in Escherichia coli is a 14kDa protein which is predicted to be an integral membrane protein. Over expression of UspB results in cell death in stationary phase, and mutants of UspB are sensitive to ethanol exposure during stationary phase [].
Probab=25.16 E-value=2e+02 Score=20.17 Aligned_cols=34 Identities=15% Similarity=0.122 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033003 95 LCAAACLLYWSIFRICKYYKDVQRLEEVEKRYKE 128 (129)
Q Consensus 95 isGf~LfL~l~i~R~~~li~~l~~l~~~~~~~k~ 128 (129)
+||-++|+.+++-.++++.+-...+..-+-.+|+
T Consensus 2 is~d~i~~Al~~v~~vNm~RY~SsLR~LL~imR~ 35 (107)
T PF10625_consen 2 ISGDAIFWALCIVCIVNMARYFSSLRALLYIMRE 35 (107)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6899999999999999998887777665555443
No 25
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=24.92 E-value=4.5e+02 Score=23.70 Aligned_cols=42 Identities=26% Similarity=0.229 Sum_probs=22.2
Q ss_pred HHHHHHHHHHcCC-chHHHHHHHHH-----HHHhHHHHHHHHHHHHHHHHHHHH
Q 033003 14 AEAAIAILLTIPS-PKLLKNRLVSL-----VSLILQPALFIVPFAGFQLLDIYW 61 (129)
Q Consensus 14 ~E~~~~~lL~lPl-P~~~r~~l~~~-----~~~~~~~~~~il~~~~llF~Da~~ 61 (129)
.-.++.+++|+|+ |-. --++.. .++++..+-. ++=.|+|..+
T Consensus 140 w~aalIllit~PlIPlf--Milvg~~a~~~s~~~~~~~~~----ls~~FLD~Lr 187 (559)
T COG4988 140 WAAALILLITAPLIPLF--MILVGLAAKDASEKQFSALAR----LSGHFLDRLR 187 (559)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHH----HHHHHHHHhc
Confidence 3456677888887 621 112222 2334444332 3346999988
No 26
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=23.86 E-value=2e+02 Score=18.17 Aligned_cols=16 Identities=13% Similarity=0.258 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHhh
Q 033003 111 KYYKDVQRLEEVEKRY 126 (129)
Q Consensus 111 ~li~~l~~l~~~~~~~ 126 (129)
..-.++.+++++.+++
T Consensus 28 ~~~~~~~~~~~~~~~l 43 (85)
T TIGR02209 28 QLNNELQKLQLEIDKL 43 (85)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444433
No 27
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=23.83 E-value=2.3e+02 Score=19.99 Aligned_cols=33 Identities=18% Similarity=0.276 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033003 93 VILCAAACLLYWSIFRICKYYKDVQRLEEVEKR 125 (129)
Q Consensus 93 ~YisGf~LfL~l~i~R~~~li~~l~~l~~~~~~ 125 (129)
+-++|..+++...-+|...++...-+++++.+.
T Consensus 7 fLlsaig~ll~~~tnRl~ri~dR~R~L~~~~~~ 39 (130)
T PF11026_consen 7 FLLSAIGLLLLVLTNRLARIVDRIRQLHDELRD 39 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 468999999999999999999988888887664
No 28
>PF15220 HILPDA: Hypoxia-inducible lipid droplet-associated
Probab=23.61 E-value=2e+02 Score=18.03 Aligned_cols=24 Identities=17% Similarity=0.143 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 033003 91 RNVILCAAACLLYWSIFRICKYYK 114 (129)
Q Consensus 91 RN~YisGf~LfL~l~i~R~~~li~ 114 (129)
=|+|+-|-.|-|.=+..|++..+.
T Consensus 5 lnlyllgvvltllsifvrlmesle 28 (63)
T PF15220_consen 5 LNLYLLGVVLTLLSIFVRLMESLE 28 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999888777777765444
No 29
>COG5232 SEC62 Preprotein translocase subunit Sec62 [Intracellular trafficking and secretion]
Probab=23.28 E-value=58 Score=25.96 Aligned_cols=20 Identities=20% Similarity=0.399 Sum_probs=16.5
Q ss_pred HHHHHHHHcCC-chHHHHHHH
Q 033003 16 AAIAILLTIPS-PKLLKNRLV 35 (129)
Q Consensus 16 ~~~~~lL~lPl-P~~~r~~l~ 35 (129)
.+++.+.|.|+ |+..|++.+
T Consensus 160 lv~lalVlfplWPr~mr~g~~ 180 (259)
T COG5232 160 LVTLALVLFPLWPRNMRQGLF 180 (259)
T ss_pred HHHHHHHHHhcCchHhhcCee
Confidence 35678889997 999999987
No 30
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=22.35 E-value=3.1e+02 Score=20.95 Aligned_cols=19 Identities=5% Similarity=-0.022 Sum_probs=10.8
Q ss_pred cCCchHHHHHHHHHHHHhH
Q 033003 24 IPSPKLLKNRLVSLVSLIL 42 (129)
Q Consensus 24 lPlP~~~r~~l~~~~~~~~ 42 (129)
-|.|-.=.+.+++.+-+.+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~ 48 (205)
T PRK06231 30 ENVEELKSKSIINELFPNF 48 (205)
T ss_pred CChhhcCHHHHHHHhcCcH
Confidence 3445444567777765543
No 31
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=21.51 E-value=2.7e+02 Score=19.07 Aligned_cols=20 Identities=10% Similarity=0.175 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 033003 108 RICKYYKDVQRLEEVEKRYK 127 (129)
Q Consensus 108 R~~~li~~l~~l~~~~~~~k 127 (129)
+...+-.+++.++++.++++
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~ 47 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLK 47 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555443
No 32
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=20.79 E-value=2.6e+02 Score=18.30 Aligned_cols=17 Identities=18% Similarity=0.411 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHhhh
Q 033003 111 KYYKDVQRLEEVEKRYK 127 (129)
Q Consensus 111 ~li~~l~~l~~~~~~~k 127 (129)
....++.+++.+.++++
T Consensus 39 ~~~~~l~~l~~~~~~l~ 55 (97)
T PF04999_consen 39 QLFYELQQLEKEIDQLQ 55 (97)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
Done!