Query 033003
Match_columns 129
No_of_seqs 110 out of 272
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 13:57:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033003.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033003hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jd3_A STBB protein; plasmid s 46.1 11 0.00038 26.4 2.2 17 85-101 35-51 (130)
2 3twe_A Alpha4H; unknown functi 41.8 25 0.00086 17.6 2.5 17 112-128 6-22 (27)
3 2cly_C ATP synthase coupling f 38.3 70 0.0024 20.3 4.8 37 55-91 11-49 (77)
4 3m48_A General control protein 32.3 59 0.002 17.3 3.2 21 108-128 8-28 (33)
5 1uo4_A General control protein 32.1 60 0.002 17.4 3.2 21 108-128 9-29 (34)
6 2wuj_A Septum site-determining 30.4 77 0.0026 18.5 3.9 28 101-128 28-55 (57)
7 1l6x_B Minimized B-domain of p 26.3 23 0.00078 19.1 0.9 9 89-97 21-29 (34)
8 3c3f_A Alpha/beta peptide with 25.9 84 0.0029 16.8 3.2 21 108-128 9-29 (34)
9 1afo_A Glycophorin A; integral 23.8 70 0.0024 17.8 2.6 16 95-110 23-38 (40)
10 1kd8_B GABH BLL, GCN4 acid bas 22.2 1E+02 0.0036 16.6 3.2 21 108-128 9-29 (36)
11 3c3g_A Alpha/beta peptide with 21.8 1E+02 0.0035 16.4 3.2 21 108-128 8-28 (33)
12 2oxj_A Hybrid alpha/beta pepti 20.8 1.1E+02 0.0038 16.4 3.2 22 107-128 8-29 (34)
13 1zda_A Mini protein A domain, 20.7 34 0.0012 18.9 0.9 8 89-96 26-33 (38)
No 1
>2jd3_A STBB protein; plasmid segregation, actin-like filaments, RHH2, PARM, plasmid, DNA binding, DNA binding protein; 2.8A {Escherichia coli}
Probab=46.06 E-value=11 Score=26.37 Aligned_cols=17 Identities=18% Similarity=0.051 Sum_probs=13.9
Q ss_pred HHHhHhhHHHHHHHHHH
Q 033003 85 SIYKAQRNVILCAAACL 101 (129)
Q Consensus 85 ~~fraQRN~YisGf~Lf 101 (129)
.+=+.|||.+|+|.+|+
T Consensus 35 ~Rgd~~R~allaGlAL~ 51 (130)
T 2jd3_A 35 ERGELFRNAFISGMALH 51 (130)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 34566999999999986
No 2
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=41.79 E-value=25 Score=17.57 Aligned_cols=17 Identities=24% Similarity=0.602 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHhhhh
Q 033003 112 YYKDVQRLEEVEKRYKE 128 (129)
Q Consensus 112 li~~l~~l~~~~~~~k~ 128 (129)
+.+++..++|.+++++|
T Consensus 6 lykeledlqerlrklrk 22 (27)
T 3twe_A 6 LYKELEDLQERLRKLRK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56788889998888776
No 3
>2cly_C ATP synthase coupling factor 6, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.45.1.1 PDB: 1vzs_A 2wss_V*
Probab=38.29 E-value=70 Score=20.29 Aligned_cols=37 Identities=5% Similarity=0.155 Sum_probs=21.5
Q ss_pred HHHHHHHHhhhhhcccccc--CChhHHHHHHHHHHhHhh
Q 033003 55 QLLDIYWKSEHRLMCTSEI--CTAAERDRYEKSIYKAQR 91 (129)
Q Consensus 55 lF~Da~~ky~~~~~~~~~~--~~~~~~~~~~~~~fraQR 91 (129)
||+|-+|.|.......++. .+|....++.--+.|-||
T Consensus 11 LFldKIREYk~Ks~~~G~lVD~~Pe~~kel~~el~kL~~ 49 (77)
T 2cly_C 11 LFVDKIREYRTKRQTSGGPVDAGPEYQQDLDRELFKLKQ 49 (77)
T ss_dssp HHHHHHHHHHHHHTCCSSSSSCCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 6999999997654322332 345444455444555554
No 4
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=32.33 E-value=59 Score=17.34 Aligned_cols=21 Identities=19% Similarity=0.214 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 033003 108 RICKYYKDVQRLEEVEKRYKE 128 (129)
Q Consensus 108 R~~~li~~l~~l~~~~~~~k~ 128 (129)
++-.++.+...++++++++|+
T Consensus 8 kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 8 KVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 566788888899999988875
No 5
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=32.08 E-value=60 Score=17.43 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 033003 108 RICKYYKDVQRLEEVEKRYKE 128 (129)
Q Consensus 108 R~~~li~~l~~l~~~~~~~k~ 128 (129)
++-.++.+...++++++++|+
T Consensus 9 KVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 9 KGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHH
Confidence 466788888889999888875
No 6
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=30.40 E-value=77 Score=18.47 Aligned_cols=28 Identities=14% Similarity=-0.017 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033003 101 LLYWSIFRICKYYKDVQRLEEVEKRYKE 128 (129)
Q Consensus 101 fL~l~i~R~~~li~~l~~l~~~~~~~k~ 128 (129)
||--+..-.-.+..+...++++++++++
T Consensus 28 FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 28 FLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444677777888999999999888765
No 7
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=26.30 E-value=23 Score=19.11 Aligned_cols=9 Identities=33% Similarity=0.383 Sum_probs=6.9
Q ss_pred HhhHHHHHH
Q 033003 89 AQRNVILCA 97 (129)
Q Consensus 89 aQRN~YisG 97 (129)
.|||-||-.
T Consensus 21 eQrn~yI~s 29 (34)
T 1l6x_B 21 EQRNAKIKS 29 (34)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhHHHH
Confidence 499999853
No 8
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=25.87 E-value=84 Score=16.82 Aligned_cols=21 Identities=10% Similarity=0.148 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 033003 108 RICKYYKDVQRLEEVEKRYKE 128 (129)
Q Consensus 108 R~~~li~~l~~l~~~~~~~k~ 128 (129)
++-.++.+...++++.+++|+
T Consensus 9 KVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 9 KLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHH
Confidence 456778888888888888875
No 9
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=23.77 E-value=70 Score=17.76 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 033003 95 LCAAACLLYWSIFRIC 110 (129)
Q Consensus 95 isGf~LfL~l~i~R~~ 110 (129)
+-|-.|+.+.+|+|+.
T Consensus 23 iIG~IllI~y~I~rl~ 38 (40)
T 1afo_A 23 VIGTILLISYGIRRLI 38 (40)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5678899999999864
No 10
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=22.23 E-value=1e+02 Score=16.65 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 033003 108 RICKYYKDVQRLEEVEKRYKE 128 (129)
Q Consensus 108 R~~~li~~l~~l~~~~~~~k~ 128 (129)
++-.++.+.-.++.+.+++|+
T Consensus 9 KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 9 KVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 455677777788888887775
No 11
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=21.75 E-value=1e+02 Score=16.37 Aligned_cols=21 Identities=14% Similarity=0.231 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 033003 108 RICKYYKDVQRLEEVEKRYKE 128 (129)
Q Consensus 108 R~~~li~~l~~l~~~~~~~k~ 128 (129)
++-.++.+...++++.+++|+
T Consensus 8 KvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 8 KLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 456677888888888888875
No 12
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=20.85 E-value=1.1e+02 Score=16.36 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 033003 107 FRICKYYKDVQRLEEVEKRYKE 128 (129)
Q Consensus 107 ~R~~~li~~l~~l~~~~~~~k~ 128 (129)
.++-.++.+...++++.+++|+
T Consensus 8 ~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 8 XKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHH
Confidence 3566788888888888888874
No 13
>1zda_A Mini protein A domain, Z38; IGG binding domain, protein A mimic; NMR {Synthetic construct} SCOP: k.13.1.1 PDB: 1zdb_A
Probab=20.67 E-value=34 Score=18.87 Aligned_cols=8 Identities=38% Similarity=0.385 Sum_probs=6.3
Q ss_pred HhhHHHHH
Q 033003 89 AQRNVILC 96 (129)
Q Consensus 89 aQRN~Yis 96 (129)
-|||-||-
T Consensus 26 eQrn~yI~ 33 (38)
T 1zda_A 26 EQRNAKIK 33 (38)
T ss_dssp THHHHHHH
T ss_pred HHHHhHHH
Confidence 39999985
Done!