Query 033003
Match_columns 129
No_of_seqs 110 out of 272
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 13:57:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033003.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033003hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2clyc1 f.45.1.1 (C:5-70) ATPa 58.9 11 0.00077 22.0 4.8 38 55-92 7-46 (66)
2 d1yoza1 a.253.1.1 (A:11-124) H 26.0 10 0.00073 23.4 0.9 8 89-96 58-65 (114)
3 d1ppjg_ f.23.13.1 (G:) Ubiquin 24.1 47 0.0034 19.4 3.7 30 25-54 25-55 (75)
4 d1lghb_ f.3.1.1 (B:) Light-har 23.2 51 0.0037 17.2 3.5 21 83-106 10-30 (43)
5 d1v65a_ a.212.1.1 (A:) hypothe 15.5 23 0.0017 20.2 0.8 10 86-95 25-34 (64)
6 d2axtl1 f.23.31.1 (L:1-37) Pho 15.0 39 0.0029 17.0 1.6 10 2-11 16-25 (37)
7 d1jo5a_ f.3.1.1 (A:) Light-har 13.5 79 0.0058 16.8 2.7 23 81-106 13-35 (48)
8 d1deeg_ a.8.1.1 (G:) Immunoglo 12.6 33 0.0024 18.6 0.9 8 89-96 18-25 (51)
9 d1uuja_ a.221.1.1 (A:) Lissenc 11.5 97 0.007 17.9 2.9 21 108-128 56-76 (76)
10 d2izva1 a.271.1.1 (A:386-429) 10.4 56 0.0041 17.1 1.4 11 23-33 23-33 (44)
No 1
>d2clyc1 f.45.1.1 (C:5-70) ATPase subunit F6 {Cow (Bos taurus) [TaxId: 9913]}
Probab=58.89 E-value=11 Score=21.99 Aligned_cols=38 Identities=5% Similarity=0.132 Sum_probs=22.6
Q ss_pred HHHHHHHHhhhhhcccccc--CChhHHHHHHHHHHhHhhH
Q 033003 55 QLLDIYWKSEHRLMCTSEI--CTAAERDRYEKSIYKAQRN 92 (129)
Q Consensus 55 lF~Da~~ky~~~~~~~~~~--~~~~~~~~~~~~~fraQRN 92 (129)
||+|-+|.|+......++. .+|....++.--..|-||.
T Consensus 7 LFldKiREY~~Ks~~~Gg~vD~~Pe~~kel~~el~kl~~~ 46 (66)
T d2clyc1 7 LFVDKIREYRTKRQTSGGPVDAGPEYQQDLDRELFKLKQM 46 (66)
T ss_dssp HHHHHHHHHHHHHTCCSSSSSCCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 6999999997654222332 4555555555555555553
No 2
>d1yoza1 a.253.1.1 (A:11-124) Hypothetical protein AF0941 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=26.05 E-value=10 Score=23.41 Aligned_cols=8 Identities=50% Similarity=0.551 Sum_probs=6.5
Q ss_pred HhhHHHHH
Q 033003 89 AQRNVILC 96 (129)
Q Consensus 89 aQRN~Yis 96 (129)
-|||+|+-
T Consensus 58 vqrnfyll 65 (114)
T d1yoza1 58 VQRNFYLL 65 (114)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 49999974
No 3
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=24.14 E-value=47 Score=19.38 Aligned_cols=30 Identities=17% Similarity=0.335 Sum_probs=22.9
Q ss_pred CCchHHHHHHHHHHHHhHHHHHHHHH-HHHH
Q 033003 25 PSPKLLKNRLVSLVSLILQPALFIVP-FAGF 54 (129)
Q Consensus 25 PlP~~~r~~l~~~~~~~~~~~~~il~-~~~l 54 (129)
|+|..+++.+.|.++....-++.+.+ +++.
T Consensus 25 afag~~~~gi~N~~RR~~~~~l~v~PPfi~~ 55 (75)
T d1ppjg_ 25 AFPHYFSKGIPNVLRRTRACILRVAPPFVAF 55 (75)
T ss_dssp SSTTTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcchHHhcccHHHHHhHHhceEEcCHHHHH
Confidence 45788999999999887777776766 6544
No 4
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=23.23 E-value=51 Score=17.24 Aligned_cols=21 Identities=5% Similarity=0.007 Sum_probs=16.0
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHH
Q 033003 83 EKSIYKAQRNVILCAAACLLYWSI 106 (129)
Q Consensus 83 ~~~~fraQRN~YisGf~LfL~l~i 106 (129)
+++.|.+ .|++||..|....+
T Consensus 10 EA~EfH~---~~~~g~~~F~~iAv 30 (43)
T d1lghb_ 10 EAIAVHD---QFKTTFSAFIILAA 30 (43)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHHH
Confidence 3566666 89999999987654
No 5
>d1v65a_ a.212.1.1 (A:) hypotheical protein 2610044O15Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.46 E-value=23 Score=20.19 Aligned_cols=10 Identities=10% Similarity=0.175 Sum_probs=7.1
Q ss_pred HHhHhhHHHH
Q 033003 86 IYKAQRNVIL 95 (129)
Q Consensus 86 ~fraQRN~Yi 95 (129)
+=-+|||+|=
T Consensus 25 Ld~~Qk~Lyr 34 (64)
T d1v65a_ 25 LDSSQKRLYE 34 (64)
T ss_dssp SCHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 4457999984
No 6
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=14.96 E-value=39 Score=17.00 Aligned_cols=10 Identities=20% Similarity=0.069 Sum_probs=5.6
Q ss_pred cchHHHHHHH
Q 033003 2 ALQWLILAYA 11 (129)
Q Consensus 2 sL~~~lv~~~ 11 (129)
||||.++..+
T Consensus 16 sLy~GlLlif 25 (37)
T d2axtl1 16 SLYLGLLLIL 25 (37)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 5667665443
No 7
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=13.51 E-value=79 Score=16.82 Aligned_cols=23 Identities=9% Similarity=-0.034 Sum_probs=17.4
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHH
Q 033003 81 RYEKSIYKAQRNVILCAAACLLYWSI 106 (129)
Q Consensus 81 ~~~~~~fraQRN~YisGf~LfL~l~i 106 (129)
+-+++.|.+ .|++|+.+|....+
T Consensus 13 ~~EA~E~H~---~~~~g~~~F~~iAv 35 (48)
T d1jo5a_ 13 DEQAQELHS---VYMSGLWLFSAVAI 35 (48)
T ss_dssp HHHHHHHHH---HHHHTTTHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHH
Confidence 345677777 89999999987654
No 8
>d1deeg_ a.8.1.1 (G:) Immunoglobulin-binding protein A modules {Staphylococcus aureus [TaxId: 1280]}
Probab=12.64 E-value=33 Score=18.60 Aligned_cols=8 Identities=50% Similarity=0.489 Sum_probs=6.2
Q ss_pred HhhHHHHH
Q 033003 89 AQRNVILC 96 (129)
Q Consensus 89 aQRN~Yis 96 (129)
-|||-||-
T Consensus 18 eQrn~fI~ 25 (51)
T d1deeg_ 18 AQRNGFIQ 25 (51)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 59998874
No 9
>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.45 E-value=97 Score=17.93 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 033003 108 RICKYYKDVQRLEEVEKRYKE 128 (129)
Q Consensus 108 R~~~li~~l~~l~~~~~~~k~ 128 (129)
.+..+.+++..+|.+.+++++
T Consensus 56 SViRLQkKImdLE~~~~~lqe 76 (76)
T d1uuja_ 56 SVIRLQKKVMELESKLNEAKE 76 (76)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 367788889999999888764
No 10
>d2izva1 a.271.1.1 (A:386-429) Suppressor of cytokine signaling 4, SOCS-4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.40 E-value=56 Score=17.10 Aligned_cols=11 Identities=27% Similarity=0.486 Sum_probs=7.8
Q ss_pred HcCCchHHHHH
Q 033003 23 TIPSPKLLKNR 33 (129)
Q Consensus 23 ~lPlP~~~r~~ 33 (129)
-+|+|..+++-
T Consensus 23 ~LPLP~~Lk~y 33 (44)
T d2izva1 23 ALPIPSSMKLY 33 (44)
T ss_dssp TSSSCHHHHHH
T ss_pred cCCCCHHHHHH
Confidence 47999777653
Done!